#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 20:09 GMT

TreeBASE (cc) 1994-2008

Study reference:
Tanney J.B. 2012. Microcyclospora rhoicola. Fungal Planet, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S13505]

[ The following blocks are input data for analysis step 10238 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep10238;
        DIMENSIONS NTAX=11;
        TAXLABELS
            Microcyclospora_malicola_GU570537.1
            Microcyclospora_malicola_GU570538.1
            Microcyclospora_pomicola_GU570539.1
            Microcyclospora_pomicola_GU570540.1
            Microcyclospora_quercina_GU269789.1
            Microcyclospora_rhoicola_DAOM242276
            Microcyclospora_rhoicola_SturgeonLake
            Microcyclospora_tardicrescens_GU570541.1
            Microcyclospora_tardicrescens_JQ358790.1
            Microcyclosporella_mali_GU570536.1
            Pseudocercospora_rhoina_GU269771.1
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14873]

	TITLE Microcyclospora_ITS;
	LINK TAXA = TaxaForAnalysisStep10238;
	DIMENSIONS NCHAR=548;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                    10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540        ]
[                                                     .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .        ]
Microcyclospora_malicola_GU570537.1          AAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACCGAGCGAGGGTCCTCGTGGCC--CGACCTCTCCACCCTT-TGCTGTGACCGTGACCGTCTGTCTGTCGCCTCGGGGGA-----CCCCGACGTTCGCGTC----GGC-CCCCCGGCGTGCCAA-CCAACCTCTGCATCTTCAGTCGTCTGAGTCGTATTGCGAAATAAAGCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCTTGTTCGAGCGTCATTACACCCCTCCAGCCTCGCTGGGTCTTGGGCGTCCGCGGTCCGCCGCGCGCCTCAATGT-CGCCGGCCG-GTGCGCCTGTCCCCGAGCGTCGTGACCATTCGG-TTCGCTCGTGCGGGTCAGGGGCGTCGC----GCCGTCAA-AACCTCTCCATTCAGGTTGACCTCGGATCAAGTAGGGATA
Microcyclospora_malicola_GU570538.1          AAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACCGAGCGAGGGTCCTCGTGGCC--CGACCTCTCCACCCTT-TGCTGTGACCGTGACCGTCTGTCTGTCGCCTCGGGGGA-----CCCCGACGTTCGCGTC----GGC-CCCCCGGCGTGCCAA-CCAACCTCTGCATCTTCAGTCGTCTGAGTCGTATTGCGAAATAAAGCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCTTGTTCGAGCGTCATTACACCCCTCCAGCCTCGCTGGGTCTTGGGCGTCCGCGGTCCGCCGCGCGCCTCAATGT-CGCCGGCCG-GTGCGCCTGTCCCCGAGCGTCGTGACCATTCGG-TTCGCTCGTGCGGGTCAGGGGCGTCGC----GCCGTCAA-AACCTCTCCATTCAGGTTGACCTCGGATCAAGTAGGGATA
Microcyclospora_pomicola_GU570539.1          AAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACCGAGTGAGGGCCCTCGTGGCC--CGACCTCTCCACCCTT-TGCTGTGACCGTAACCGTTTGTCTGTCGCCTCGGGGGA-----CCCCGACGTTCGCGTC----GGC-CCCCCGGCGTGCCAA-CCAACCTCTGCATCTTCTGTCGTCCGAGTCATATTGCATAATAAAGCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCTTGTTCGAGCGTCATTACACCCCTCCAGCCTCGCTGGGTCTTGGGCGTCCGCGGTCCGCCGCGCGCCTCAATGT-CGCCGGCCG-GTGCGCCTGTCCCCGAGCGTCGTGACCATTCGG-TTCGCTCGTGAGGGTCGGGGGCGCTGC----GCCGTGAA--ACCTCTCCATTCAGGTTGACCTCGGATCAAGTAGGGATA
Microcyclospora_pomicola_GU570540.1          AAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACCGAGTGAGGGCCCTCGTGGCC--CGACCTCTCCACCCTT-TGCTGTGACCGTAACCGTTTGTCTGTCGCCTCGGGGGA-----CCCCGACGTTCGCGTC----GGC-CCCCCGGCGTGCCAA-CCAACCTCTGCATCTTCTGTCGTCCGAGTCATATTGCATAATAAAGCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCTTGTTCGAGCGTCATTACACCCCTCCAGCCTCGCTGGGTCTTGGGCGTCCGCGGTCCGCCGCGCGCCTCAATGT-CGCCGGCCG-GTGCGCCTGTCCCCGAGCGTCGTGACCATTCGG-TTCGCTCGTGAGGGTCGGGGGCGCTGC----GCCGTGAA--ACCTCTCCATTCAGGTTGACCTCGGATCAAGTAGGGATA
Microcyclospora_quercina_GU269789.1          ----------------AACCTGCGGAGGGATCATTACAGAGTACGGGGGCTTGCCCCCGTTGAACTCACCACCCTT-TGCTGTGACCGTGACCATCTGTCTGTCGCCTCGGGGGA-----CCCCGACGCTCGCGTC----GGC-CCCCCGGCGTGCCAA-CCAACCTCTGCATCA-TAGTCGTCGGAGTCGTATTGCGAAATAAAGCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCTTGTTCGAGCGTCATTACACCCCTCCAGCCTCGCTGGGTCTTGGGCGTCCGCGGTCCGCCGCGCGCCTCAATGT-CGCCGGCCG-GTGCGCCTGTCCCGGAGCGTCGTGACTTTTCAG-TTCGCTCGTCGGGACCGGGGGCGTCGC----GCCGTGAA-ACCACCTTCTTTCAGGTTGACCTCGGATCAAGTAGGGATA
Microcyclospora_rhoicola_DAOM242276          ----TCTCCGTAGGTGAACCTGCGGAGGGATCATTACCGAGCGAGGGT-TTCACCGCC--CGACCTCTCCACCCTTTTGTTGTTAAC----CCACCCGTCACTTGCCTTGGGGGA-------CCGCGGCCCCGGCC----CGC-CCCCCATGGCCCCAACCCAACCTCTGCATTACCTGACGTCTGAGTCTTGATACAAATGAAAGCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATTGAATCTTTGAACGCACATTGCACCTCCCGGTATTCCGGGGGGTATGCCTGTCCGAGCGTCATTACTCCACTCAAGCCTCGCTTGGTCTTGGGCGT-CGCGGTCCGCCGCGTGCCTCCATGT-CGTCGGCCG-GTGCGTCTGCCTTCCAGCGTTGTGAAT-CTCAG-TTCGCTT-CGGAGGTCGACGGTGCCGC----GCCGTGAACCCCCCCTTCTTACAGGTTGACCTCGGATCAGGTAGGGATA
Microcyclospora_rhoicola_SturgeonLake        CAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACCGAGCGAGGGT-TTCACCGCC--CGACCTCTCCACCCTTTTGTTGTTAAC----CCACCCGTCACTTGCCTTGGGGGA-------CCGCGGCCCCGGCC----CGC-CCCCCATGGCCCCAACCCAACCTCTGCGTTACCTGACGTCTGAGTCTTGATACAAATGAAAGCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATTGAATCTTTGAACGCACATTGCACCTCCCGGTATTCCGGGGGGTATGCCTGTCCGAGCGTCATTACTCCACTCAAGCCTCGCTTGGTCTTGGGCGT-CGCGGTCCGCCGCGTGCCTCCATGT-CGTCGGCCG-GTGCGTCTGCCTTCCAGCGTTGTGAAT-CTCAG-TTCGCTT-CGGAGGTCGACGGTGCCGC----GCCGTGAACCCCCCCTTCTTACAGGTTGACCTCGGATCAGGTAGGGATA
Microcyclospora_tardicrescens_GU570541.1     AAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACCGAGTGAGGGTCCTCGTGGCC--CGACCTCTCCACCCTT-TGCTGTGACCGTGACCGTCCGTCTGTCGCCTCGGGGGA----CCCCCGACGTTCGCGTC----GGC-CCCCCGGCGTGCCAA-CCAACCTCTGCATCTTCAGTCGTCTGAGTCGTATTGCAAAATAAAGCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCTTGTTCGAGCGTCATTACACCCCTCCAGCCTCGCTGGGTCTTGGGCGTCCGCGGTCCGCCGCGCGCCTCAATGT-CGCCGGCCG-GTGCGCCTGTCCCCGAGCGTCGTGACCATTCGG-TTCGCTCGCGTGGGTCAGGGGCGTCGC----GCCGTGAA--ACCTCTCCATTCAGGTTGACCTCGGATCAAGTAGGGATA
Microcyclospora_tardicrescens_JQ358790.1     AAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACCGAGTGAGGGTCCTTGTGGCC--CGACCTCTCCACCCTT-TGCTGTGACCGTGACCGTCCGTCTGTCGCCTCGGGGGA----CCCCCGACGTTCGCGTC----GGC-CCCCCGGCGTGCCAA-CCAACCTCTGCATCTTCAGTCGTCTGAGTCGTATTGCAAAATAAAGCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCTTGTTCGAGCGTCATTACACCCCTCCAGCCTCGCTGGGTCTTGGGCGTCCGCGGTCCGCCGCGCGCCTCAATGT-CGCCGGCCG-GTGCGCCTGTCCCCGAGCGTCGTGACCATTCGG-TTCGCTCGCGTGGGTCAGGGGCGTCGC----GCCGTGAA--ACCTCTCCATTCAGGTTGACCTCGGATCAAGTAGGGATA
Microcyclosporella_mali_GU570536.1           AAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACCGAGTGAGGG--CCCCCGGCC--CGACCTC-CAACCCTT----TGTGAACACAAC-------TCGTTGCTTCGGGGGCGACCCTGCCGTC-TCGGCGCC----GGCGCCCCCGGAGGACA---CCCAACCCTGCATCCATG--CGTCGGAGCGATTTTGTAAATCAAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTTCACCACTCGAGTCTGACTCGGTATTGGGCGC-CGCGCATCGCCGCGCGCCTCAAAGT-CCCCGGCTGGGTGGGCCCGTCCCCGAGCGTTGTGGTTTCACAGTCTCGCTA-GGGAGCACGCGCCCGCCGCATCGGCCGCTAA-ACACCCCCATCACAGGTTGACCTCGGATCAGGTAGGGATA
Pseudocercospora_rhoina_GU269771.1           -------------------------AGGGATCATTACCGAGTGAGGG--CTCAC-GCC--CGACCTC-CAACCCTT----TGTGAACCAAAC-------CTGTTGCTTCGGGGGCGACCCTGCCGACGACCCTGTCGCCGGGCGCCCCCGGAGGT-----CTAAACACTGCATCTTTG--CGTCGGAGTT-TGAAACAAATTAAA-CAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTGGCTTGGTATTGGGCGT-CGCGGTGCTCCGCGCGCCTTAAAGTGTTCCGGCTG-AGCTGTCCGCCTCTAAGCGTTGTGGATTTTTCAATTCGCTT-CGGAGTGCGGATG-GCCGC---GGCCGTTAA--ATCATTATTCAAAGGTTGACCTC----------------
;
END;

[ The following blocks are output data for analysis step 10238 ]
BEGIN TREES;
      TITLE Microcyclospora_ITS_Bayesian_Analysis;
      LINK TAXA = TaxaForAnalysisStep10238;
      TREE Fig._2 = [&R] (Pseudocercospora_rhoina_GU269771.1:0.0,(Microcyclosporella_mali_GU570536.1:0.14696527,((Microcyclospora_rhoicola_DAOM242276:1.0E-8,Microcyclospora_rhoicola_SturgeonLake:0.00206606):0.15411917,(Microcyclospora_quercina_GU269789.1:0.04781288,((Microcyclospora_pomicola_GU570540.1:1.0E-8,Microcyclospora_pomicola_GU570539.1:1.0E-8):0.0189253,((Microcyclospora_tardicrescens_JQ358790.1:0.00198345,Microcyclospora_tardicrescens_GU570541.1:1.0E-8):0.0047826,(Microcyclospora_malicola_GU570538.1:1.0E-8,Microcyclospora_malicola_GU570537.1:1.0E-8):0.00712193):0.00347804):0.02299448):0.06704822):0.11168141):0.12064664);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58111]


END;