#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 14, 2026; 5:10 GMT TreeBASE (cc) 1994-2008 Study reference: Bonito G.M. 2012. Historical biogeography and diversification of truffles in the Tuberaceae and their newly identified Southern hemisphere sister lineage. PLOSone, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13537] [ The following blocks are input data for analysis step 10275 ] BEGIN TAXA; TITLE TaxaForAnalysisStep10275; DIMENSIONS NTAX=99; TAXLABELS Choiromyces_alveolatus_97 Choiromyces_alveolatus_HS2886 Choiromyces_meandriformis_DL_Oregon Choiromyces_meandriformis_RH691_Iowa Dingleya_JT31575_Australia Gymnohydnotrya_australiana_OSC130601 Gymnohydnotrya_echinulata_clar4529 L_C02_EcM_Salix_humboldtiana_Argentina L_C04_EcM_Salix_humboldtiana_Argentina Labyrinthomyces_JT27750_Australia Leppia_JT28813_Australia Leppia_holotype_Australia Nothojafnia_cf_thaxterii_N10_Argentina P5M4_5a_EcM_Nothofagus_obliqua_Argentina R8M8_7x_EcM_Nothofagus_alpina_Argentina Reddellomyces_JT27723_Australia Reddellomyces_JT27724_Australia Reddellomyces_JT4985_Australia Reddellomyces_JT6873_Australia Tuber_JT9769_Nepal Tuber_aestivum_AF516786_Europe Tuber_aestivum_China_GQ217542 Tuber_aestivum_JT30500_Sweden Tuber_anniae_JT13209_Washington_holotype Tuber_anniae_JT22695_Oregon Tuber_asa_M1828_Italy Tuber_bellisporum_JT11679_Oregon_holotype Tuber_bellisporum_JT7270_Oregon_paratype Tuber_beyeleri_JT32597_Oregon Tuber_borchii_GB1_Italy Tuber_borchii_GB14_Italy Tuber_brumale_GB21_Italy Tuber_brumale_GB22_Italy Tuber_californicum_JT28058_California Tuber_canaliculatum_JT28215_New_Jersey Tuber_canaliculatum_OSC59072_West_Virginia Tuber_castellanoi_JT19924_California_paratype Tuber_castellanoi_JT28069_California_holotype Tuber_cf_borchii_China Tuber_dryophilum_GB35_Italy Tuber_dryophilum_GB37_Italy Tuber_excavatum_BM100_Spain Tuber_excavatum_China_GQ217540 Tuber_excavatum_OSC80639_Italy Tuber_ferrugineum_MA2721_Italy Tuber_fulgens_M2435_Italy Tuber_gennadii_BM667_Spain Tuber_gennadii_JT9627_Spain_paratype Tuber_gennadii_M1904_Italy Tuber_gibbosum_JT26632_Washington Tuber_gibbosum_JT30580_Oregon Tuber_indicum_A_GB236_China Tuber_indicum_A_GB240_China Tuber_indicum_B_GB237_China Tuber_indicum_B_JT29410_Oregon Tuber_liaotongense_OSC87602_China Tuber_lyonii_GA21_Georgia Tuber_lyonii_OSC58244_Texas Tuber_macrosporum_JT13362_Italy Tuber_magnatum_GB12_Italy Tuber_magnatum_GB13_Italy Tuber_magnatum_JT19460_Italy Tuber_malacodermum_JT32319_Spain Tuber_melanosporum_GB200_Italy Tuber_mesentericum_CW105_Sweden Tuber_multimaculatum_OSC62169_Spain_paratype Tuber_nitidum_BM105_Spain Tuber_oregonense_GB284_Oregon_holotype Tuber_oregonense_JT27985_Oregon_paratype Tuber_oregonense_JT30493_Oregon_paratype Tuber_panniferum_JT12835_Spain Tuber_pseudoexcavatum_CJ408_China Tuber_regimontanum_ITCV909_Mexico_holotype Tuber_rufum_GB213_Italy Tuber_sancarloensis_ITCV181_Mexico_holotype Tuber_sancarloensis_ITCV885_Mexico Tuber_shearii_JT12498_North_Carolina Tuber_shearii_OSC51052_North_Carolina Tuber_sp_ITCV884_Mexico Tuber_sp_ITCV908_Mexico Tuber_sp_ITCV910_Mexico Tuber_sp_JT13224_West_Virginia Tuber_sp_JT28121_Japan Tuber_sp_JT32567_Mexico Tuber_sp_JT8755_Florida Tuber_sp_RH73_Iowa Tuber_sp_RH8270753_Iowa Tuber_sp_TB10248_New_York Tuber_sp1_K201_Japan Tuber_sp14_K186_Japan Tuber_sp2_K215_Japan Tuber_sp8_K228_Japan Tuber_sp9_K214_Japan Tuber_sphaerosporum_JT12487_Oregon Tuber_sphaerosporum_JT19772_Oregon Tuber_spinoreticulatum_U188_Maryland_isotype Underwoodia_beatonii_JT28375_Australia Underwoodia_beatonii_JT28380_Australia Underwoodia_singeri_mes161_Chile ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14817] TITLE Fig3a_Tuberaceae_ITS; LINK TAXA = TaxaForAnalysisStep10275; DIMENSIONS NCHAR=1352; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Choiromyces_alveolatus_97 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GC-----------?GGCGG------------------------TCCCG?-------------AGACGGGACGCCTGACCGTGTTATCAGAAACCCCAC--------------CGCGTACCG-CTCCA---TGTTGCTTCCC-CAGGT---------------------CAGCAGCCCT---TTGCCTGCCCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACGCCGGAGGCGCCTGGGGGAGGG----CC----------CACTCCAAT-------------CTCGCTTTGTCCAGCGGAAGAGAAGTC---TGACTT--GG----CC-ACAGTGCCATCAGTATTA--------ACGTACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCTCG----TCACTT-CCACTG-----TGGTGTTGGCGGCA-GTG----G------TCACCAGCACGGAGGATCTTCTCCCCGTCTGCCCACTCC-GCCGAAATAAATC-AGGCGGACA----AACTGA-TCTCAGC--GACTGACTTAGT---------------------------------AAA------------ATCAATCAGCCAGGA-GTGAG----GTTACGT----CCA-----------GCCCAGCTTC---GGACCCCC-------ATCCGTTGCCACGCA-----GACCATG----GGTTGGCCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Choiromyces_alveolatus_HS2886 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GCGG------------------------TCCCGT-------------AGACGGGACGCCTGACCGTGTTATCAGAAACCCCAC--------------CGCGTACCG-CTCCA---TGTTGCTTCCC-CAGGT---------------------CAGCAGCCCT---TTGCCTGCCCGGCACGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGGCGCCTGGGGGAGGG----CC----------CACTCCAAT-------------CTCGCTTTGTCCAGCGGAAGAGAAGTC---TGACTT--GG----CC-ACAGTGCCATCAGTATTA--------ACGTACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCTCG----TCACTT-CCACTG-----TGGTGTTGGCGGCA-GTG----G------TCACCAGCACGGAGGATCTTCTCCCCGTCTGCCCACTCC-GCCGAAATAAATC-AGGCGGACA----AACTGA-TCTCAGC--GACTGACTTAGT---------------------------------AAA------------ATCAATCAGCCAGGA-GTGAG----GTTACGT----CCA-----------GCCCAGCTTC---GGACCCCC-------ATCCGTT-GCCACGCA----GACCATG----GGTTGGCCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Choiromyces_meandriformis_DL_Oregon ???????????????????????????????????????????????????????????????TAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------------------------------------CACCATCTCC-----------GGCGGG------------------------CGTCCC-------------CGCGAGGGGTCGCCCAACGGTATCAAGAAACCCCCC---------------GTGTACCT-CTCCA---TGTTGCTTCCC-CAGGC---------------------CGGCAGCCGTCGCCTGCCCGGCCCACGCCCCATCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGCGTGTGGCCGGAGGTGCCCGGGGGAGGA----CC----------AACCCCAAC---------CTCCAACCATCCAGTGGAAGAGA----AGTC---TGACCG--GG----CC--ACGTGCCATCTGTATTA--------ACAAACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AAACCCC----TCACTTCTGTATAG----TGGTGTTGGCGGAA-GTG----G-------TGCCCGCGCTGGGGTTCGTCTCCCCCGCCGCCCACTCC-GCCGAAATGCATC-GGGCGGACA----AACTGA-TCTCAGC--AACTGACTTAGT---------------------------------AAA------------ATCAATCAGCCAGGA-GTTAG----GTTACGTTACGCCT-----------TGCCGGCCAGCTTGGACCCCC-------ATCCAACTTGGTACA-----AATCATG----GGCTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Choiromyces_meandriformis_RH691_Iowa ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA------------------------------------CACGATCTCC-----------GGTGGG------------------------CGTCCC-------------CGGAAGGGGTCGTCCAACGGTATCAAGCAATCCCC---------------TGCGTACCT-CTCCA---TGTTGCTTCCC-CAGGT---------------------CGGCAGCCGTCGCCTGCCCAGCCCATGCCCCATCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGTGTGTGGCCGGAGGTGCCCGGGGGAGGA----CC----------AACCCCAAC---------CTCCAACCATCCAGTGGAAGAGA----AGTC---TGACCG--GG----CC--ATGTGCCATCTGTATTA--------ACAAACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AAACCCC----TCACTTCTGTATAG----TGGTGTTGGCGGAA-GTG----G-------TGCCCGCGCTGGGGATCGTGTCCCCGGTGGCCCACTCC-ACCGAAATGCATT-GGGCAGACA----AACTGA-TCTCAGC--AACTGACTTAGC---------------------------------AAA------------ATCAATCAGTCAGGA-GTTAG----GTTATGT-----CT-----------TGCCAGCCGGCTTGGACCCCC-------ATCCAACTTGGTACA-----AATCATG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Dingleya_JT31575_Australia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA--------------------------------GAAAGCTTATACGT-----------AGAGGC------------------------TGCCGGAGAGGGGGGGCTCGAATCCCCTTCCCCGGTGGGGCTACAATAAACCCAA------------ACCGCGTACCT-GACCA---TGTTGCTTCCC-CGGAC---------------------CCCCCAGGGCGACCTGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGACCGGGAGAAGGG----CCGGAATGCATTTCCTGAAAG-------CACCCCAACCAGCATGTGGATGAGA----TGTC---TGACGCT-GG----CCTTTTGCGCCACCGGTTTTGTTTTA---ACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACATA--AA--AACCCCC----TCACAAGCATTTG-----TGGTGCTGGCGGAT-GTG------GCCACCCCCAGTT--------------TTGGGGGCGCCCACACC-GCTGAAATGGATC-AGGCGGACG---CAACCCCCTCTCGCC--AACTGGCTTAGT---------------------AAAATCGAC-GTGAA------------GTCAACCAGCCAGGA-GTAAG----GGAGACG----TCT-----------CGCCCGCAGTGAAGGACCCCG------CATCC----ACGGAGATGAGAAGCCTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Gymnohydnotrya_australiana_OSC130601 ?????????????????????????????????????????????????????????????????????????????????????????????????????????ATCATTA----------------------ACACGTCCCCACAATGGAAAAGGG-----------AGGGGC------------------------AACTCA-------------CAGGCCCCTCCCTTCCAAC---------ACCCTCTC--------------CGCGTACCT-CTCCG---TGTTGCTTCCC-CGGGA---------------------CGACGGTCCC-CTCCGTCCGGTGTCGGACGCCTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCCCCCGTCACTCGACGGTCGCGGGTGGCGGCTCCCGTTCCCGAGCTGCCCGGGGAAGGT----AA----------CCCCCAAAC--------------AGAAAATCGCATTTGAACCAGATGTC---TGACGAG-GG----CC--CAGGGCCCGATGTATACAA------ATACT-TGAAAACTTTCAACAACGGATCTCTAGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AGTCCCCCCC-TCACAC-AAGCTG-----TGGTGATGGCGTCG-GTA----GACTTGGCGGTCCCTGCGA----------CCCCTCCCGTCCACCCC-GTCAAAATCGATC--GGCGGACA----ACTGAT--ATCGGC--TGCTGACTTAGTAGAATCGACTCTTGTCGGCCACAGGTCGCG-----C------------AATTGTCAGTCAGGA-GTCGA----GTCGAGT----CCC-----------GCCCCTTCTCC--GGACCCCC-------GTCCAAAC------------ACCTCTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGAAAA????????????????????????????????????????? Gymnohydnotrya_echinulata_clar4529 ??????????????????????????????????????????????????????TAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAGTTCACCTCCAGATTTGGAAAAGGGATAAATACGGGTGTGGTGGGATCCTTCGCCCGGTGGGA---TGCTGGTGGATGCCCACCACGTGCCCCCCGGCAACGATTCGCGGTCCCCTCACACCCACCCTTGCCAAACCATGTC--------------CGTGTACCT-CTCCA---TGTTGCTTCCC-CGGGA---------------------CCAGTGGTGGAGCCCGCGCCGTGGTGGACCACTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCACCCGTCGCAGGGACCCGAGTAACCCCCGGGGAAGGTACCCCCCAAAACAAATCGCTATGAA---------------------------CCAGC----TGTC---TGACACA-GG----CCCACAAGGCCTTAGGTATATAA------ATACACTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--ACCCCCCC---TCACACTAGCTTG-----TGGTGGTGGCGTCG-GTGG---GTACCGGGGACCACGCGT-----------CCCCTCCGACCCACCCC-GCCGAAATCGAT--GGGCAGACA----ACTGAT--CTCAGC--AGCTGGCTTAGT-ACAATCGACCTTTCCGGCCCACCAGCCGGTCGGGC------------ATCAATCAGTCAGCA-GTTAG----GTTACGT----CCC-----------GCCCCTCAGTT--GGACCCCC-------ATCCAATGAAGTA-------GACTCTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATA????????????????????????????????????????????????????? L_C02_EcM_Salix_humboldtiana_Argentina ???????????????????????????????????????????????????????????????????????????????????????????????????GGAAGGATCATTA---------------------------------------CAAATGT-----------TGAGGG------------------------TGTCCT-------------CAGGG----GCCCCCAAGCAAAC-----ACATGCCT--------------TGTGTATTC-CTCC----TGCCGGTCCCT-CAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCGTCGCAGTAGGGGCTGAGGTGCCCAGCGGAGGG----CC----------CATTTTTAA------------CCCTTTGCTAAACC----------TGTCTCATGAGAT--GG----CC--CCGTGCCAGAATCTTTAA-------ACATT-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCATC----TCACAT-GCAATG-----TGGTCTTGGCTCAT-GTG----T-ATAGCGCCTCC----------------TGTGCTGACTTCACTAA-GCTGAAATGAATA-GGCCAGATA----AGCAAA-CCATGGC--AACTGACTCACA-G-------------------AGTGTTTAA-CAATG------------CTAAACTAGTCGGTA--CCTG----GTATGAA----TCT-----------GTGCCAGT-----GGACCCCC-CCGTTCATTCAAATGAGACA-----------------TGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGA???????????????????????????????????????????? L_C04_EcM_Salix_humboldtiana_Argentina ???????????????????????????????????????????????????????????????????????????????????????????????????GGAAGGATCATTA---------------------------------------CAAATGA-----------CTGGGA------------------------TGTCCT-------------ATCGG----ACCCCCAAGCAAA------CACATCTA--------------TGTGTACTC-TGCCA---TGTTGCTTCCC-CAGAC---------------------CAGTGGCCAC-TGCTGCCAGCCCAGCCCCTAATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCCTGGGTTGAGGTGTCTGGGGAAGGG----CTCAATATCAAACTTTTCAAC------------------------CCACTAGT----CGTC---TGAGAA--GG----CC--ATGTGCCGCAATATTTA--------AACAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCGAC----TCACAT-ATCGTG-----TGGTATTGGTAGAA-GTG----G-ATAGTACTAACA---------------CTACTTTGTCTTACTCT-GCTGAAATGAATA-GGCCAGAAA----AGTGGA-CCATGGT--AATAGATTCCAG-G-------------------AGTGTTTTA-AAATG------------CTATACTAGTCTTAT--CCAA----GTCATAT----TCT-----------GAGCCACT-----GGACCCCCC------ATTTAGTC-CA---------AACAACAGT--GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGA???????????????????????????????????????????? Labyrinthomyces_JT27750_Australia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------AAGAAAGATTTAACCTGTAGATGCTGCAGGA-----------GAGGGG------------------------GGGTCA-------------GATCCCCCTTTCCCAGCGGGCTACGAA-ACCCAAAC--------------CGCGTACCT-GACCA---TGTTGCTTCCC-CGGAC---------------------CCGCAGGGCG-ACCTGCCCGGTGCTGGGCCCCCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCAGGGGGACGCGCCGGCCATGGGCCGGGAGAAGGG----CCGGAATGTACTTTCCTGAAAAGAAGAACCCCCCAACCAGCCCGAAGATGTGG----AGTC---TGACGCC-GG----CC-TTCGTGCCGTCGGTTTAGTTTTTA--ACACACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACATA--AA--AGCCCCC----TCACAAGCATTTG-----TGGTGCTGGCGATT-GTG----G--CCGTCCCCCCTCGC------------CGGGGGGGGCCCACTCC-GCTGAAATGGATC-AGGCGGACG----CAACCCTTCTCGCC--CACTGGCTTAGTAAA------------------ACCGACGTC----AA------------GTCGACCAGCCAGGA-GTTTG----GTGGCGT-----CT-----------TGCCCGCAACGAAGGACCCCC------CCTCCTCC-ATGGAGTTGAGAAACCTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Leppia_JT28813_Australia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA----------------------------TCCGTAGATGCTGCCGGA-----------GAGGGG------------------------GGTCGA-------------ATCCCCT--TTCCCAGTGCGCTACAAGAAACCCAAA------------ACCGTGTACCT-GACCA---TGTTGCTTCCC-CGGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCAGGGCGACCTGCGGTGGACCGGGAGAAGGG----CCGGAATGCATTTCCTGGAAA-------CCCCCCAACCAGCCTGTGGATGAGA----CGTC---TGACGCT-GG----CC-TTCGCGCCACCGGTTTTGTTTTA---ACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACGTA--AA--AACCCCC----TCACAAGCATTTG-----TGGTGCTGGCGGAT-GTG----G--CCACCCCCAGTT--------------TTGGGGGTACCCACACC-GCTGAAATGGATC-AGGCGGACG---CAGCCCCCTCTCGCC--AACTGGCTTAGTAAA------------------ATCGACGTG----AA------------GTCAACCAGCCAGGA-GGGAG----GGAGACG----TCT-----------TGCCCACAGTAAAGGACCCCG------CATCCACGGAGGTGAGA----AGCCTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGG????????????????????????????? Leppia_holotype_Australia ????????????????????????????????????????????????????????????????????????????????????????????????????????????ATTA-----------------------------------------TACGT-----------AGAGGC------------------------TGCCGGAGAGGGGGGGCTCGAATCCCCTTCCCCGGTGGGGCTACAATAAACCCAA------------ACCGCGTACCT-GACCA---TGTTGCTTCCC-CGGAC---------------------CCCCCAGGGCGACCTGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGACCGGGAGAAGGG----CCGGAATGCATTTCCTGAAAA-------CACCCCAACCAGCATGTGGATGAGA----TGTC---TGACGCT-GG----CCTTTTGCGCCACCGGTTTTGTTTTA---ACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACATA--AA--AACCCCC----TCACAAGCATTTG-----TGGTGCTGGCGGAT-GTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCA?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Nothojafnia_cf_thaxterii_N10_Argentina ?????????????????????????????????????????????????????????????????????????????????????????????????TGCGGAGGATCATTA----------------GAAAATCGTTTGCAATCCGTAGGCATAACC-----------GGGGAG------------------------AGGAAG-------------GGGGTCAAACCCCCCTTTCCCCG-----ATGCTCTAACAGGAACCCAAACCGCGTACCCCAACCA---TGTTGCTTCCC-CAGAC---------------------CCGCAGGGAG-ACCTGCCTGGCACGTGCCCCTCCT---------------------------------------------------------------------------------------------------------------------------------------------------CACCG------------------------------------------------------------------------------------------------------------ATGGGAACGGCCGGCCGCGGACTGGGAGAAGGG----CCGGAATTTACTTCCAGAAAA-------CACCAATCCAGCCCGAAGA-TGAGA----AGTC---TGACGCGTGC----CT--CCGGGCCACAGGTTTTACATA----ACACAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACAGA--AC--AACCCCC----TCACAAGCAATTG-----TGGTGATGGCGGAC-GTG----G-CTTCC-GGCTCCC--------CCATACCGGGAACGGCCCACACC-GCTGAAATCGATC-AGGCGGACGC---AACCTC-CCTCGTC--AACTGGCTTAGT-AAATTCGACG---------------------TCAA------------GTCAACCAGCCAGGA-GTGGG----GTGTTGT----CCG-----------GCCCACACTAC-AGGAGCCAC-------ATCCATC-GCGATGAGA---AACCTCG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGGAGGA??????????????????????????????????????????? P5M4_5a_EcM_Nothofagus_obliqua_Argentina ???????????????????????????????????????????????????????????????????????????????????????????????????GGAAGGATCATTA---------------ACCAGTCCGGATAACGGAAAAAGGCACGCGG-----------GGGGAG------------------------ATCCGTCGCCAGCGGCTGCGACTCCCGCTGTCCTGTCCCGCCC----ACCCTCTC--------------CGTGTACCT-CTCCA---TGTTGCTTTCC-TGGGA---------------------CGGTTGGCCCAGCCTGCCCGGTGGTGGGCTCCTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCCCGTCTGTTGGGGCGCTGAGGTGCCCGCGGCCGAGTTTCCCGGGGAAGGT----ACCCTTCATAAATCCCCTGCA------------------------------GCAACCTGTC---TGACACA-GG----CC--CATGGCCATTGCTACAT--------AATTACATAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAC-AG--AA--AGCCCCCCCTCACACAC-AAGCTG-----TGGTGATGTCGTTG-GTG----AGCC-------------------------TCAACCGGCTCCACCAC-GTCCAAATCCAT--GGGCGGACA----ACTGAT--CTCAGC--AGCTGACTTAGTAAGATAGAGTTCATCTGCAGTACTTGCTGTCAGAAG------------GAACATCAGTCAGGA-GCTAG----GTTACGT---CCCG-----------TCCCCGCCTCATTGGAACCCC----CCCATGAAATT------------ATCTTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGG????????????????????????????????????????????? R8M8_7x_EcM_Nothofagus_alpina_Argentina ???????????????????????????????????????????????????????????????????????????????????????????????????GGAAGGATCATTA---------------------------------------CAAATGT-----------TGAGGG------------------------TGTCCT-------------CAGGG----GCCCCCAAGCAAAC-----ACATGCCT--------------TGTGTATTC-CTCC----TGCCGGTCCCT-CAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCGTCGCAGTAGGGGCTGAGGTGCCCAGCGGAGGG----CCCATTTTTAACCCTTTGCTA----------------------------AACC----TGTCTCATGAGAT--GG----CC--CCGTGCCAGAATCTTTAA-------ACATT-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCATC----TCACAT-GCAATG-----TGGTCTTGGCTCAT-GTG----T-ATAGCGCCTCC----------------TGTGCTGACTTCACTAA-GCTGAAATGAATA-GGCCAGATA----AGCAAA-CCATGGC--AACTGACTCACA-G-------------------AGTGTTTAA-CAATG------------CTAAACTAGTCGGTA--CCTG----GTATGAA----TCT-----------GTGCCAGT-----GGACCCCC-CCGTTCATTCAAATGAGACA-----------------TGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGA???????????????????????????????????????????? Reddellomyces_JT27723_Australia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------AGAGAAAATGTAACCGGTAGATGCTGCAGGA-----------GAGGGG------------------------GGCTCA-------------AATCCCCCTTTCCCAGCGCGCCACAAA-ACCCAAAC--------------CGCGTACCC-AACCA---TGTTGCTTCCC-CGGAC---------------------CCGCAGGGTG-ACCTGCCCGGCGCTGGGCCCCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCAGGGGGACGCGTCGGCCGTGGGCCGGGAGAAGGG----TCGGAATGTACTTTCCTGAAG---AAACCCCCCCAACCTGCCCGAAGATGTGG----AGTC---TGACGTC-GG----CC-TCGGTGCCGTCGGTTTTGTTTTTA--ACACACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACATA--AA--AGCCCCC----TCACAAGCATTTG-----TGGTGCTGGCGATT-GTG----G--CTGTCCCCCTTCG-------------CTGGGCGGGCCCACACC-GCTGAAATGGATC-AGGCGGACG----CAACCCTTCTCGCC--CACTGGCTTAGTAAA------------------ACCGACTTC----AA------------GTCGACCAGCCTGGA-GTTTG----GTGGCGT-----CT-----------TGCCGGCAACGAAGGACCCCC------CCTCCTTAGACGGAGTTGAGAAACCTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Reddellomyces_JT27724_Australia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA----------------------------AGAAAGTAATCCGTAGGCATCGCCTGGAGAGGGGA------------------------GGTCAT-------------AAATCCCCTTTCCCGGTGCTCTACCAA-ACCCAAAC--------------CGTGTACCA-AACCA---TGTTGCTTCCC-CAGCC---------------------CCGCAGGGAG-ACCTGCCCGGCATTGGCCCCCCGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGCCGAGGGCCTGCCCGCTGTGGGCTGGGAGAAGGG----CCTGAACGAGTATGTTCTGAA-ACCCGTCACCCCAAACACCCTGAAGAGGAGA----AGTC---TGACCAT-GG-----CGTTTGCGCCAACCGTTTTGTTACA---ACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACATAGTAA--AACCCCC----TCACAAGAGTTTG-----TGGTGGTGACGGAT-GTG----GCTTCGCCCCCTGACT-------------TTGGGGGGCCCCACACC-GTTGAAATGGATC-CGGCGGACG---CAACCCCCCCTCGACCAAACTGGCTTAGT---------------------AATGCTCGACGTCAA------------GTCGACCAGCCAGGA-GCGGT----GTCGACG----TCC-----------TGCCCGCAACAATGGACCCCC----CCCATCCATG---GCGATGAGGAAACCTAG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Reddellomyces_JT4985_Australia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA--------------AAGAAGAGATTTAACCTGTAGATGCTGCAGGA-----------GAGGGG------------------------GGGTCA-------------GATCCCCTTTTCCCAGCGGGCTACGAA-ACCAAAAC--------------CGCGTACCT-GACCA---TGTTGCTTCCC-CGGAC---------------------CCGCAGGGCG-ACCTGCCCGGTGCTGGGCCCCCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCAGGGGGACGCGCCGGCCATGGGCCGGGAGAAGGG----CCGGAATGTACTTTCCTGAAAAGAAGAACCCCCCAACCAGCCCGAAGATGTGG----AGTC---TGACGCC-GG----CC-TTCGTGCCGTCGGTTTAGTTTTTA--ACACACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACATA--AA--AGCCCCC----TCACAAGCATTTG-----TGGTGCTGGCGATT-GTG----G--CCGTCCCCCCTCGC------------TGGGGGGGGCCCACTCC-GCTGAAATGGATC-AGGCGGACG----CAACCCTTCTCGCC--CACTGGCTTAGTAAA------------------ACCGACGTC----AA------------GTCGACCAGCCAGGA-GTTTG----GTGGCGT-----CT-----------TGCCCGCAACGAAGGACCCCC------CCTCCTCC-ATGGAGTCGAGAAACCTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Reddellomyces_JT6873_Australia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA-----------------AGAAAGTAATCCGTAGATATCGCCTGGAG-----------AGGGGA------------------------CGTCAA-------------AATCCCCTTTCCCCGGTGCTCTACCAA-ACCCAAAC--------------TGTGTACCA-AACCA---TGTTGCTTCCC-CAGCC---------------------CCGCGGGGTG-ACCTGCCCGGCATTGGTCCCCCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTTGACCGAGAGGGCCTGCCGGCTGTGGGCTGGGAGAAGGG----CCTGAACGAGTGTGTTCTAAA-AACCCTCCCCCAAAACAGCCTGAAGAGGAGA----AGTC---TGACCAT-GG----CC-TTTGCGCCAACCGTTTTGTTACA---ACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACATAGAAA--AACCCCC----TCACGAGCATTTG-----TGGTGCTGACGGAT-GTG----G-CTCGCCCCCCCGACC------------TGGGGGAGCCCCACACC-GTTGAAATGGATC-CGGCGGACG----CAACCCTCCTCGCCCAAACTGGCTTAGT---------------------AATGCTCGATACCTA------------GTCGACCAGCCAGGA-GTAGG----GTTGACG----TCT-----------CGCCCGCAACAATGGACCCCCTCCGTCCGTCAGGATGAGG--------AACCTAG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_JT9769_Nepal ???????????????????????????????????????????????????????????AGTAAAAGTCGTAACAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTA-----------------------------------------------------------------------------------------TTAT-------------AAGG----------------------------------------------CGTGGAAAG-GCCCC---TGTGACCGTCC-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAAGGGCCTAATAGAAAA----CT--------------CTAAA---------------------------CTTAC----TGTC---TGAGAA--GG----CC--ACGTGCCGT-AATCTTTAA------ACATT-TTAAAACCTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCCCA----TCACAA-TGAGTG-----TGGTATTGGCAGAA-GTG----G-GTAGGGCTAGC----------------ATTGCTGGCCCCACTCT-GCTGGAATGAATA-GGCCGGAAA----TGTAGA-CCATGGT--AACAAACTTTCA-G-------------------AGTATTTTA-AGATG------------CTAAATTAGTTTGTA-GGCTG----GTCAGAA----TCC-----------AGGCCATT-----GGACCCCC-------ATTCTGT------------------------------------GTAAAGCAGTAATGTT????????????????????????????????????????????????????????????????????????????? Tuber_aestivum_AF516786_Europe ??????????????????????????????????????????????????????????????????????????????????TCCGTAGGTGAACCTGCGGAAGGATCATTA--------------------------------------GACAAGCC-----------GGGTGA------------------------CGCCAG-------------TGGGGCGGCCACCCAGAGCACCA-----AACCACAG-------------CTGCGTACAA-TGCCA---TGTTGCTTCCC-CGGGC---------------------CAGCGGCCGT-CGCCGCCCGTCGGCGAGACACAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGGATCGCCGCGCGGAGGCGCCCGGGGGTGGG----GC-----TCCCGCCCCTCAAA--------ACTAAAACGTCGGGAGCATTGGAC----TGTC---TGACCTGGGC----CACATTGGGCCGCCGAAAACTTG------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCAGGGCATGCCTGTCCGAGCGTCAG-TG--CA--AACCACC----TCACGGAAACACG-----TGGTGCTGGCGGAG-GTG----T-GGTGTCTGATCGGGCCGCGATGGCGGCCCGGTCCTCCCCACCCC-GCCGAAATGTATG-GGGAGCAAC----ACGCATTGGC-GG---ACCCGACTTGGT-A-------------------GACGCTGTGGTTAGC------------GTGGAGCAGTCGCGG-GGCCA----TTGCTGT----CCC-----------TCCCGCCTC----GAGCCCGTGGCGG-CATCTCCG-GGG---------CATCTCGTCAGGTTTGACCTCGGATCAGGTAGGGGTACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGA???????????????????????????????????????????? Tuber_aestivum_China_GQ217542 ????????????????????????????????????????????????????????GAAGTAAAAAGTCGTAACAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTA--------------------------------------AACAAGCC-----------GGGTGA------------------------CGCCCG-------------TGGGGCGGCCACCCAGAGCACCA-----AGCCACAT-------------CTGTGTACGA-TGCCG---TGTTGCTTCCC-CGGGC---------------------CAGCGGCCGT-TGCCGCCCACCGGCGAGACACTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGGATCGCCAGGTGGAGGCGCCCGGGGGTGGG----GC----TCCCGCCCCTTGAAA-----------CCAAACCACCGGAGCATGGAC----TGTC---TGATCTG-GG----CCACACTGGACCCCCAAAGCTTG------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCAGGGCATGCCTGTCCGAGCGTCAG-TG--CA--AACCACC----TCACGG-AAGTCG-----TGGTGCTGGCGGAG-GTG----GTGTCGG-GTCGAGCTGCGATGGCGGCCCGGTCCCCCACCCACCCC-GCCGAAATGTATG-GGGAGGAAC----GCGCATTGGC-GG---ACCCGACTTGGT-A-------------------GATGTCGCGATTATC------------GCGAAGCAGTCGTGGGGCCAT----T----------GCT----------GTCCCTCCCGCCTCGAGCCCGTGACGG-CATCCCGG-GGG---------CATCTTGTCAGGTTTGACCTCGGATCAGGTAGGGGTACCCGCTGA-ACTTAAGCATATCAATAAG??????????????????????????????????????????????????? Tuber_aestivum_JT30500_Sweden ??????????????????????????????????????????????????????????????????????????????GGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA--------------------------------------AACAAGCC-----------GGGTGA------------------------CGCCCG-------------TGGGGCGGCCACCCAGAGCACCA-----AACCACAG-------------CTGCGTACAA-TGCCA---TGTTGCTTCCC-CGGGC---------------------CAGCGGCCGT-CGCCGCCCGTCGGCGAGACACAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGGATCGCCGCGCGGAGGCGCCCGGGGGTGGG----GC----TCCCGCCCCTCGAAA-----------CTAAGACGTCGGGAG-CGTGGACTGTGTC---TGACCTGGGC----CACATTGGGCCGCCGAAAACTTG------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCAGGGCATGCCTGTCCGAGCGTCAG-TG--CA--AACCACC----TCACGG-AACACG-----TGGTGCTGGCGGAG-GTG----GTGTCGGATCGGGCCGCGATGGCGGC---CCGGTCCTCCCCACCCC-GCCGAAATGTATG-GGGAGCAAC----ACGCATTGGC-GG---ACCCGACTTGGT-A-------------------GACGCTGTGGTTAGC------------GTGGAGCAGTCGCGGGGCCA?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_anniae_JT13209_Washington_holotype ?????????????????????????????????????????????????????????????????AGTCGTAACAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------CAAATGT-----------CTGGGA------------------------TGTCCA-------------ATCGG----GCCCCCAAGCAAA------CACATCCA--------------TGTGTACAC-TCCCA---TGTTGCTTTCC-CAGAT---------------------CAGTGGCCAC-TGCTGCCAGCCCAACCCCTTGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGTCCTGGGTTGAGGTGTCTGGGGAAGGG----CCCAATAACAAACCTTTGAAC------------------------CAATTAGT----TGTC---TGAGTA--GG----CC--ACCTGCCGC-AATCTTTAA-----AACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCCCC----TCACAG-ATAATG-----TGGTATTGGTAGAA-GTG----A-ACGGTACTTACA---------------TTACCTTGTCTCACTCT-GCTGAAATGAATT-GGCCAGAGA----AGTGGACCCATGGT--AATTGACTCCAG-G-------------------AGTGTTTTT-CAATG------------CTAAACTAGTCTTTA-CCCAA----GTCAAGT----TCT-----------GAGCTACC-----GGACCCCC------CATTAAGTCCAA---------AACAGAGT---GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_anniae_JT22695_Oregon ???????????????????????????????????????????????????????????????????????????????????????????????????GGAAGGATCATTA---------------------------------------CAAATGT-----------CTGGGA------------------------TGTCCA-------------ATCGG----GCCCCCAAGCAAA------CACATCCA--------------TGTGTACAC-TCCCA---TGTTGCTTTCC-CAGAT---------------------CAGTGGCCAC-TGCTGCCAGCCCAACCCCTTGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGTCCTGGGTTGAGGTGTCTGGGGAAGGG----CCCAATAACAAACCATTGAAC------------------------CAATTAGT----TGTC---TGAGTA--GG----CC--ACCTGCCGC-AATCTTTAA-----AACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCCCC----TCACAG-ATAATG-----TGGTATTGGTAGAA-GTG----A-ACGGTACTTACA---------------TTACCTTGTCTCACTCT-GCTGAAATGAATT-GGCCAGAGA----AGTGGACCCATGGT--AATTGACTCCAG-G-------------------AGTGTTTTT-CAATG------------CTAAACTAGTCTTTA-CCCAA----GTCAAGT----TCT-----------GAGCTACC-----GGACCCCC------CATTAAGTC------------CAAAACAGAGTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_asa_M1828_Italy ??????????????????????????????????????????????????????????GAAGTAAAA?GTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------CAAATAT-----------CTGGGA------------------------TGTTCA-------------ACTGG----ACTCCCAAGTAAA------CACATTCA--------------TGTGTACCC-TTCCA---TGTTGCTTCCC-CAGAC---------------------CAGTGGCCAT-TGCCACCAGTCAAGTCCCTAATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCTCCTGGGCTGAGGTGTCTGGGGAAGGA----CCCATTATCAAACCTTTAAAC------------------------AAATTAGT----TGTC---TGAGAC--GG----CC--ATGTGCCGC-AATCTTTAA-----AATATA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTAGGTATTCCTGAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCATC----TCACAG-ATAATG-----TGGTATTGGTAGAA-GTG----G-GTAGTACTGGATT--------------GTACTTTATCCTACTCC-ACCGAAATCAATA-GGTCAGAAA----TGTGGA-CCATGGT--AACAGACTCTCA-G-------------------AGTGTTATAAAAATA------------CTATACTAGTCTTAA--CCTG----GTTGGAA----TCT-----------GAGTCACT-----GGACCCCC-------CTTGAGTCC-----------AAACAAAGAGAGGTTGACCTCG?????????????????????????????????????????????????????????????????????????????????????????????? Tuber_bellisporum_JT11679_Oregon_holotype ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGGA------------------------TGC?CT-------------TTAA?-----------------------GGC?TCCC--------------TTAGTA----AACCAA--TATTAAACCCT-TATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCCATAGTC---TGAGAA--GG----CT--ATGTGCCAT-AATTATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACTAGACCCC----TCACGT-TTGACG-----TGGTATTGATGGAA-GTG----GGATAGA-------------------------AATTGCTTTACTCC-TTCAAAATTTAAA-GGCCGGAAA----AATGAT--CTCGGT--GACAGACTTGCA-G-------------------AGTGTTGTG-AAAAC------------CTAAATTAGTCTTGA-GCCAG----GTCTAGT----CCG-----------TGCTTCT------GGACCCCC-------ATCCAAT-------------------------GTAAACT----ATTAGA??????????????????????????????????????????????????????????????????????????????????????? Tuber_bellisporum_JT7270_Oregon_paratype ???????????????????????????????????????????????????????????????????????????????????????????????????????ATGCCTTTA--------------------------------------------------------------------------------------------------------------------------------------AGGCTCCC--------------TTAGTA----AACCAA--TATTAAACCCT-TATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCCATAGTC---TGAGAA--GG----CT--ATGTGCCAT-AATTATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACTAGACCCC----TCACGT-TTGACG-----TGGTATTGATGGAA-GTG----GGACAGA-------------------------AATTGCTTTACTCC-TTCAAAATTTAAA-GGCCGGAAA----AATGAT--CTCGGT--GACAGACTTGCA-G-------------------AGTGTTGTG-AAAAC------------CTAAATTAGTCTTGA-GCCAG----GTCTAGT----CCG-----------TGCTTCT------GGACCCCC-------ATCCAAT-GTA---------AACT-------------------ATTAGA??????????????????????????????????????????????????????????????????????????????????????? Tuber_beyeleri_JT32597_Oregon ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------TTATA----ATGCG---TGGAAATGCCC-CTAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGG----CT----------CTCTATAAA-----------------------ACTCTAAACTTACTGTC---TGAGAA--GG----CC--ATGTGCCGT-AATCTTTAA------ACATT-TTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCTCA----TCACAA-AGAGTG-----TGGTATTGGCAGAA-GTG----G-GTAGGGCCAGCAAGGA-----------AGTGCTGGCCCCACTCT-GCTGGAATGAATA-GGCCGGAAA----TGTAGA-CCATGGT--AACAGACTTTCA-G-------------------AGTATCGTC-AAATG------------CTAAATTAGTTTGTATGCTTG----GTCAGAA----TCT-----------AGGCCATT-----GGACCCCC-------ATTCTGT-ATAAAGCAGCAA-----------TGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_borchii_GB1_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CATTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGTATGGGATGCCCTATC---GGACTCCCAA-GCAAAACACATTCCTGTGTACTCTCCCTCATTAAACTTTTGAAC-CAATTAGT----AGTC---TGAGAA--GG----CC--ATGTGCCGT-AAAATTTAA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCCCC----TCACAG-ATAATG-----TGGTATTGGTAGAA-GTGG---A--TGGTACTAACAC---------------TACTTTGTCTGACTCT-ACTGAAATGAATA-GGCCAGAGA----AGTTGACCG-TGGT--AATAGACTCCAG-G-------------------AGTGTTTTA-AAATG------------CTAAATTAGTCTTCT--CCAA----GTCATGT----TCT-----------GAGCTACC-----GGACCCCC------CATTTAGTCCAA---------ACTAGAGA---GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_borchii_GB14_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CATTACAAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTA-TGGGATGCCCTATC---GGACTCCCAA-GCAAAACACATTCCTGTGTACTCTCCCTCATTAAACTTTTGAAC-CAATTAGT----AGTC---TGAGAA--GG----CC--ATGTGCTGT-AAAATTTAA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCCCC----TCACAG-ATAATG-----TGGTATTGGTAGAA-GTGG---A--TGGTACTAACAC---------------TACTTTGTCTGACTCT-ACTGAAATGAATA-GGCCAGAGA----AGTTGACCG-TGGT--AATAGACTCCAG-G-------------------AGTGTTTTA-AAATG------------CTAAATTAGTCTTCT--CCAA----GTCATGT----TCT-----------GAGCTACC-----GGACCCCC------CATTTAGTCCAA---------ACTAGAGA---GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_brumale_GB21_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------TAAATAT-----------CTGGGA------------------------?TC?------------------------GTCCCTGATCTTC------AATCTCTC--------------TGTGTACCA-ATCCA---TGTTGCTTTCA-CAGGC--------------------TAAGTGATATT-TCCTACTCGTCAGTGGTACACAATGTCAGAGCCAATCTAATGCTTTCCACTATTGCTATCT--------------------------------TGTACTACCTGACTCCAGTTGCTACACATTGCCGATATATCCTTCCTTTGATTATCTAAGCTATTGTACTTGCTATGGTATCGATCGTTAGACTGTATTGGTGTCTTGCTACAAATTGGACAGGTTGACAGGTAGTTGGTCATTACATTCTATTTGTTCTGTCATTAATACCGCAAACGTTTAGCTATTATATTGTTAGAGCTATGTAGGCTCCTGTGGAAGGT----CT----------TCACCTTAA-----------CAAATTGTATGAGTA---TGT----AGTC---TGATAT--GG----CC--AAGTGCCAG-AT-TTATTG----AGATATT-TGAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATAGCGCCCTTTGGTATTCCTTAGGGCATACCTGTTCGAGCGTCAC-TG--CT--AACTTCC----TCACAA-ATATTG-----TGGTCTTGGTTGCT-GTA----G-ATTGTGGGTATATTTAGTACATA----TGCTCACGAGATACTCT-GCTAAAATTCATC-AGGTGGATA-----CCAGG-TATAAAT--AACAGACTTTAT-A-------------------AATGTCTAC-AGGAT------------ATGAATTAGTTGTTT-AGTAT----ATCTGAT--------------------ACTGCTATCATGGATCCCC-------------------------------------------ATCTTGAATAAATTATG??????????????????????????????????????????????????????????????????????????????????? Tuber_brumale_GB22_Italy ?????????????????ACTGCCAGGTGCAAAGTTGGTCAAACTTGGTCATTTA?AGGAAGTAAAAGTCGTAACAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------TAAATAT-----------CTGGGA------------------------TTCAA-----------------------GTCCCTGATCTTC------AATCTCTC--------------TGTGTACCA-ATCCA---TGTTGCTTTCA-CAGGC--------------------TAAGTGATATT-TCCTACTCGTCAGTGGTACACAATGTCAGAGCCAATCTAATGCTTTCCACTATTGCTATCTTGTACTACCTGACTCCAGTTGCTACACATTGCCGATATATCCTTCCTTTGATTATCTAAGCTATTGAA?ACTGCTGGCCAGCTGCCGGCTAGTAGTTCTACTTGCTATGGTATCGATCGTTAGACTGTATTGGTGTCTTGCTACAAATTGGACAGGTTGACAGGTAGTTGGTCATTACATTCTATTTGTTCTGTCATTAATACCGCAAACGTTTAGCTATTATATTGTTAGAGCTATGTAGGCTCCTGTGGAAGGT----CT----------TCACCTTAA-----------CAAATTGTATGAGTA---TGT----AGTC---TGATAT--GG----CC--AAGTGCCAG-AT-TTATTG----AGATATT-TGAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATAGCGCCCTTTGGTATTCCTTAGGGCATACCTGTTCGAGCGTCAC-TG--CT--AACTTCC----TCACAA-ATATTG-----TGGTCTTGGTTGCT-GTA----?--------------------------------------------------------ATT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_californicum_JT28058_California ??????????????????????????????????????????????????????????????????????????????????????????????????????AGGATCATTA---------------------------------------CAAATGT-----------CTGGGA------------------------TGTCCA-------------ATTTG----GCTCCTAAGCAAA------CACTTCTA--------------TGTGTACTC-TCCCA---TGTTGCTTCCC-CAGAC---------------------CAGTGGCCAC-TGCTGCCAGTCCGGCCTCTTAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTGGTCTGAGATGTCTGGGGAAGGT----CC----------ATTATTAAA----------------CTTTTAAACCAATTGCC---AGTC---TGAGAA--GG----CC--ATGTGCCGT-AA-TCTTTA----AAACATA-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATACCTGTTCGAGCGTCAC-TA--AA--AACCATC----TCATAT-ATAATG-----TGGTATTGGTAGAA-GTG----G-GTAGTATTAATA---------------GTACTTTGTCTTACTCT-ACTGAAATGCATA-GGCCAGAAA----AGTGGA-CCATGGT--AACAGACTCTCA-G-------------------AGTGTTTTA-AAATG------------CTAAATTAGTCTTAC--CACA----GTTGATA----TCT-----------GAGCTACC-----GGATCCCC-------ATTTAGTC------------CAAACCAGAGAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_canaliculatum_JT28215_New_Jersey ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA-------------------------------------GAGAGATAT-----------CAGGGA------------------------GGCCCA-------------TCCGG----TTCCCCG----------------------------------AGCAAACAA-TCCCAACGCGTTGCCAATG-AATGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTC---TGAGCA--GG----CC--ACCAGCCTG-AAACAACCA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCAGGGCATGCCTGTTCGAGCGTCAA-TA--GA--AACCCCCC---TCACC--CTCCTG-----GGG????GGGGGAG-GTG----G-GT?G???TCCC----------------GGCGCCTGGCCCACCCC-CCCGAAACGCATG-GGCCCGAGAGACGACTGGC-----TGC--GACTGACATTCT-A-------------------AGCGCTTTG-CAGGC------------CTGAACCGGTCCGCA-GTCAC----GTCGAGC-----------------------------------------------------------------------------GGTG????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_canaliculatum_OSC59072_West_Virginia ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GAGCAACAATCCCAACGCGTTGCCAATG-AATGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTC---TGAGCA--GG----CC--ACCAGCCTG-AAACAACCA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCAGGGCATGCCTGTTCGAGCGTCAA-TA--GA--AACCCCCC---TCACC--CTC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_castellanoi_JT19924_California_paratype ???????????????????????????????????????????????????????????????????????????????????CCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------CATATGC-----------CTGGGA------------------------TGCCTT-------------TA--------------------------AGGTTCCC--------------TGAGTAA---ACCCA---TATTTAAACCCTTATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---------------------------CTTGT----AGTC---TGAGAA--GA----CT--ATGTGATGT-AATTATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACCAGACCCT----TCACGT-TTAACG-----TGGTATTGATGGAA-GTG----GGGCAGA-------------------------AATTGCTCTACTCC-TTCAAAATTGAAA-GGCCGGAAA----AATGAT--CTCGGT--GACAGACTTGCA-G-------------------AGTGTTGTG-AAAAC------------CTAAATTAGTCTTGA-GCGAG----GTCGAGT----CCG-----------TGCTTCT------GGACCCCC-------ATCCAAT-------------------------GTAAACT----ATTAGA??????????????????????????????????????????????????????????????????????????????????????? Tuber_castellanoi_JT28069_California_holotype ?????????????????????????????????????????TCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTTCCCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------CATATGC-----------CTGGGA------------------------TGCCTT-------------TA--------------------------AGGTTCCC--------------TGAGTAA---ACCCA---TATTTAATCCCTTATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---------------------------CTTGT----AGTC---TGAGAA--GA----CT--ATGTGATGT-AATTATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACCAGACCCT----TCACGT-TTAACG-----TGGTATTGATGGAA-GTG----GGGCAGA-------------------------AATTGCTCTACTCC-TTCAAAATTGAAA-GGCCGGAAA----AATGAT--CTCGGT--GACAGACTTGCA-G-------------------AGTGTTGTG-AAAAC------------CTAAATTAGTCTTGA-GCGAG----GTCGAGT----CCC-----------GTGCTTCT-----GGACCCCC-------ATCCAAT-G-----------TAAACTATTAGAGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_cf_borchii_China ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA-----------------------------------CTAAACAATGT-----------GCGGGA------------------------TATCCC-------------ACCGGGG--ACTCCTTAGCAAAA-----CACATCCA--------------TGAGTACCC-TCCCA---TGTTGCTTCCC-CAGAC---------------------CAGTGGCCAC-TGCTGCCAGCTCTGTCCTCTAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGATCGTGGGTTGAGGTGTCTGGGGAAGGG----CCAACTGTCAAAACTTTTGAA---------------------------CCAATTTGTTGTC---TGAGAA--GG----CC--ATATGCCGC-AATATTTAA----AAACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCCCC----TCACAG-ATAATG-----TGGTATTGGTAGAA-GTG----G-GTAGTACTAACA---------------GTGCTTTGTCCCACTCT-ACCAAAATTAATA-GGCCAGAAA----AGTGAA-CTTGGGT--AACAGACTCTCA-G-------------------AGTGTTTTA-AAATG------------CTAAACTAGTCTTAT--CCAG----GTTGGAA----TCT-----------GAGCCACT-----GGACCCCC-------ATTTAGT--------------------------------CCAAAACAGAGAG???????????????????????????????????????????????????????????????????????????????????? Tuber_dryophilum_GB35_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------CATATGT-----------CCGGGA------------------------TGTCCA-------------A?GGG----GCTCCCAAGC?GAA-----CACATC?A--------------TGTGTACAC-TCCCA---TGTTGCTTCCC-CAGAT---------------------CAGTGGCCAC-TGCTGCCAGCCCTGCCCTTCATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCGGGTTGAGGTGTCTGGGGAAGGG----TCCAATATCAAACTTTTGAAC------------------------AAATCAGT----TGTC---TGAGAA--GG----CC--ATCCGCCGC-AAATTTTAA----AAATATATTAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGTCTGTTCGAGCGTCAC-TA---A--AACCGCC----TCACAT-ATAATG-----TGGTATTGGTAGAA-GTG----G-GTAGTGCTAAAA---------------GCACCTTGTTCTACTCT-ACTGAAATGAATA-GGCCAGAAA----AGTGAA-CCATGGT--AGTAGACTCTCA-G-------------------AGTGTTTTA-ATATA------------CTAAACTAGTCTTA--GCCAG----GTTGGAA----TCT-----------GAGTTCCT-----GGACCCCC-------ATTTAGTC------------TAAATAAGAGAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_dryophilum_GB37_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------CATATGT-----------CTGGGA------------------------TGTCCA-------------ATGGG----GCTCCCAAGCAAAA-----CACATCCA--------------TGTGTACAC-TCCCA---TGTTGCTTCCC-CAGAT---------------------CAGTGGCCAC-TGCTGCCAGCCCTGCCCTTCATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCGGGTTGAGGTGTCTGGGGAAGGG----TCCAATATCAAACTTTTGAA----------------------------CAAATCAGTTGTC---TGAGAA--GG----CC--ATCCGCCGC-AAATTTTTA----AAATATA-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA---A--AACCGCC----TCACAT-ATAATG-----TGGTATTGGTAGAA-GTG----G-GTAGTGCTAAAA---------------GCACCTTGTCCTACTCT-ACTGAAATGAATA-GGCCAGAAA----AGTGAA-CCATGGT--AGTAGACTCTCA-G-------------------AGTGTTTTA-ATATA------------CTAAACTAGTC-TTA-GCCAG----GTTGGAA----TCT-----------GAGTTCCC-----GGACCCCC-------ATTTAGT-C-----------TAAATAAGAGAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_excavatum_BM100_Spain ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????C?TCT-----------GTGCGG------------------------TTCCCG-------------GGTTC-----------------------?AACCCTC--------------CGAGTACCC-ATCCA---TGTTGCTTCCC-CAGGC---------------------CGGCAGTCCT-TGCTGCCCGTCTCCCTCCATGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCGTGGGATGGAGGTGTCTGGGGAGGGG----TCCAAACAGAAACTCTTGTGA------------------------ACACAGGC----AGTC---TGAGCG--GG----CC-CATGTGCCCTGTGAATATTG-----AACAAG-TTATAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCTCC----TCACGC-ACCCCG-----TGGTATTGGTGGAA-GCT----A-GCCGTGGGCCATCTC------------GGCTGCGGCGCTGCTCT-GCTGAAATGCATA-AGCAGGACA----ACTGGG-CCTCAGC--GAGTGACTTAGTAA-------------------AGTGTCATC-AAGAC------------CTAGAGCAGTCATCA-GCTAT----GGCTTGC----CCT-----------GCCCACCC-----GGACACTC-----CCATCCGGC-GTG---------AACCCTT----GGTTGACCTCGGATCAGGTAGGCATACCCGC?????????????????????????????????????????????????????????????????????????? Tuber_excavatum_China_GQ217540 ???????????????????????????????????????????????????????TGGAAGTAAAAGTCGTAACAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTA----------------------------------------AAAAGT-----------GTAGGG------------------------GACCCG-------------TGTGTTCGGTCCCCCACCCCA-------AACCTCCC--------------CGAGTACCC-ATCCA---TGTTGCTTTCC-CAGGC---------------------CAGCAGCCCT-TGCTGCCCGTCCCACCATGCCCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCAGGACGGAGGTGCCTGGGGAAGGG----CCCAAACTGAAACTCTGGTGG------------------------ACACAGGC----TGTC---TGAGTG--GG----CC--ATGTGCCCG-GCAAATTGA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAC-TA--GC--AACCTTC----TCACGG-ATCCCG-----TGGTGTTGGTGGAA-GCT----C-CCCGTGGCCCTCCT-------------GGTCGCGCCGCAGCTCC-GCTGAAATGCATA-GGCAGGACA----AGTTGG-CCTCAGC--GAGCGACTTAGT-A-------------------GGTGTCGTC-AAGAC------------GTACAGCAGTCCGCA-GCTAG----GCCTCGC----CCT-----------GCACATCC-----AGATCCCC--CCCCTATCTGGT-GTG---------ATCTCTCTCTAGGTTGACCTCGGATCA????????????????????????????????????????????????????????????????????????????????????????? Tuber_excavatum_OSC80639_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------AAAAGTA-----------TCGGGA------------------------CCCCCA-------------TATCCG---GTCCCCGAGCTCCA-----AACCCCTC--------------CGAGTACCC-ATCCA---TGTTGCTTTCC-CAGGC---------------------CAGCAGCCAT-TGCTGCCTGTCTGACCATGCCCGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACAGGACAGAGGTGCCTGGGGAGGGG----CTCAAACAGAAACTCTAGTAC-----------------------ACA-CAGGC----TGTC---TGAGTG--GG----CC--ATGTGCCCTGCAAGATTGA------ACGAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCTTC----TCACGG-ATCCCG-----TGGTAGTGGC?GAA-GCT----CCACTGTGCCCCTCTG-------------GGCTGCGGTGCAGCTCC-GCTGAAATGCATA-AGCAGGACA----AGTGGG-CCTCAGC--GAGTGACTTAGT-A-------------------AGTGTCTTG-AAGAC------------GTAGAGCAGTCAGCA-GCTAG----GCCATGC----CCT-----------GCCCACCA-----GGACTCCT--CCCCCATCTGGT-GTG---------AACTCTT----GGTTGACCTCGGATCAGGTAGGCATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCATA????????????????? Tuber_ferrugineum_MA2721_Italy ???????????????????????????????????????????????????TTAGAGGAAGTAAAAGTCGTAACAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------TTTGTTT-----------ATGGGA------------------------CACAAA-------------AGTG-----TTCTCTGATACAA------ACCCTCTC--------------TGTGTACCA-ATCCA---TGTTGCTTTCC-CAGGT--------GGTTGGTTTCAGTTGATGTCCAA-TCCTGCATGCTAGCTGAGTTAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTAAGCGGGTCCCTGGGAAAGGG----CCTTAC------CAATGCAAA----------------CATTTGAATC---AGC----CGTC---TGAGTT--GG----CC--CAGTGCCGC-ATTATTTGA------ATAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TG--CA--AACCCGC----TCATAA-ATATTA-----TGGTAATGATGGAA-GTG----A-AGTGAGGACAGTAA-------------TGTGCCTCGGTCACCCC-ATTGAAATGTATT-GGCAGGACA----ATTAAC--CTCTGC--AATGGACTTAGT-A-------------------ACTGTTTTG-AAGAC------------ATCAATCAGTCAATT-GCGAG----GTTCTGG----CCT-----------GGCCCCGAT----GGATTTCC-------ATCAAAG-ATG---------AACTCTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAG??????????????????????????????????????????????????? Tuber_fulgens_M2435_Italy ???????????????????????????????????????????????????????????????????????GTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA--------------------------------------AAAAATGG-----------TTGGGA------------------------CCCCCC-------------ACATAAG--GTCCCCGAGCCCA------AACCTCCC--------------TGAGTACCA-ATCCA---TGTTGCTTCCC-CAGGC---------------------CAGCAGCCAT-TGCTGCCCGTCCGGCCGTTCCTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACAGGACGGAGGTGCCTGGGGAGGGG----TCCAAAAGCAGAAACTCTGGT----------------------GCACACATGC----TGTC---TGAGTT--GGTGGGCC--ATGTGCCCG-GTTAATTGA------ATTAT-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--GC--AACCATC----TCACGG-ATCCCG-----TGGTCTTGGTGGAA-GCT----T-CCTGCGGCCCCTTT-------------GGCTGCAGCAAAGCTCC-GCTGAAATGTATA-AGCAGGACA----AACAGG-CCCCGGC--GAGTGACTTAGT-A-------------------AGTGTCGTG-AAGAC------------GTAGACCAGTCAGCA-GCCAG----GCCTTGC----CCT-----------GTTCACCCAGACACCCCCCCC-------ATCTGGT-GTG---------ATCTCTT----GGTTGACCTCGGATCAGGTAGGCATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_gennadii_BM667_Spain ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGGT------------------------GGTC?TGACTCCGTGGTGGGTCGGAGCCGCCCCCTTCATCAA-----ACACTTCC--------------CGCGTACCT-CTCCA---TGTTGCTTCCC-CGGGC---------------------CAGCGGCCTTCTGCCGCCCGTCCCGACGCCTGGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCGGTGACGGAGGCGCCCGGGGGAGGC----CCACCGACAAAACGCTACAGA----------------------GCCGACAAGT--GGAGTC---TGACAG--GG----CC--TGGTGCCCG-ATGGTGCAA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCAGGGCATGCCTGTCCGAGCGTCAC-AG--AAATACCCCAC----TCACCAGCCTTTG----GTGGTCTTGGCCCAG-GTG----GATTCAGGGGGCCGCCAAGT---------GCGGTCCAGTCCACCGC-GCCGAAATGCATATGGCCGGGCA----GCCGGT--GCCGGT--GACTGACTTAGT---------------------AATGGGTGCCGCAGG------------GCAAACCAGTCAGGA-GCCGT----CTCGAGC----CCC-----------GAGCCCAGG----GAAGGCCC------CACGTGGCCCCCCGAAAGAGAGATCATG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_gennadii_JT9627_Spain_paratype ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA-----------------------------GTATTATATCTGTGTGC-----------CGGGGT------------------------GGTCATGACTCCGTGGTGGGTCGGAGCCGCCCCCTTCATCAA-----ACACTTCC--------------CGCGTACCT-CTCCA---TGTTGCTTCCC-CGGGC---------------------CAGCGGCCTTCTGCCGCCCGTCCCGACGCCTGGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCGGTGACGGAGGCGCCCGGGGGAGGC----CCACCGACAAAACGCTACAGA----------------------GCCGACAAGT--GGAGTC---TGACAG--GG----CC--TGGTGCCCG-ATGGTGCAA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCAGGGCATGCCTGTCCGAGCGTCAC-AG--AAATACCCCAC----TCACCAGCCTTTG----GTGGTCTTGGCCCAG-GTG----GATTCAGGGGGCCGCCAAGT---------GCGGTCCAGTCCACCGC-GCCGAAATGCATATGGCCGGGCA----GCCGGT--GCCGGT--GACTGACTTAGT---------------------AATGGGTGCCGCAGG------------GCAAACCAGTCAGGA-GCCGT----CTCGAGC----CCC-----------GAGCCCAGG----GAAGGCCC------CACGTGGCCCCCCGAAAGAGAGATCATG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_gennadii_M1904_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA------------------------------ATATTATTCTGTGTGA-----------GGGGGG------------------------AGGCCATGACTCCGCGGCGGGTCGGTGCTTCCTCAATCTTCA-----ATCACCCC--------------TGTGTACCT-CTCCA---TGTTGCTTCCC-CGGTC---------------------CAGCGGCCAT-TGCCGCCCGCACCCGG?CCGCTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTCCGGGGTCGGAGGTGGCCGGGGGAGGG----CCAACCACGAAACTCTGCAAA---------------------GCCGACCGTGC----AGTC---TGACCG--GG----CC--TCGCGCCCG-AAGCTACAA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCAGGGCATGCCTGTCCGAGCGTCACAGA--AA--GACCCCC----TCAGCAGCCTTTGGTTGGTGGTGTTGGCCGGC-GTG----GAGTGGGACGGCCGTCGTAGGCGTGCG--CGTCCCCACTTCACCCA-GCCGAAATGCATATGGCCGGGCA----GCCGGT--GGCGGT--GACTGACTTAGTAACA-----------------ACTGCCGCA----GG------------GCATACCAGTCAGCA-GCCGT----CCCGAGC----CCC-----------GAGCCCTG-----GGAGCACC------CCCGTGTGCCTCCCGCAAACACTTACGG????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_gibbosum_JT26632_Washington ???????????????????????????????????????????????????????????????????????????????????CCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------AATATAC-----------CTGAGA------------------------TGCCTT-------------TA--------------------------AGGCTCTC--------------TGAGTAA---ACCCA---TATTAAACACT-TATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCATAGTC---TGAGAA--GG----CT--ATTTGCCGT-AATTATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACTAGACCCC----TCACGT-TTGACG-----TGGTATTGATCGAA-GTA----AGGCAGA-------------------------AATTGCTTTACTCC-TTCAAAATTGAAA-GGCCGGAAA----AGTGAT--CTTGGT--GACAGACTTGCA-G-------------------AGTGTTGTG-AAAAC------------CTAAATTAGTCTTCA-GTCAG----GTCAGGT----CCG-----------AGCTTCT------GGACTCCC-------ATTCAAT-ATA---------AACT-------------------ATTAGA??????????????????????????????????????????????????????????????????????????????????????? Tuber_gibbosum_JT30580_Oregon ???????????????????????????????????????????????????????????????????????????????????CCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------AATATAC-----------CTGAGA------------------------TGCCTT-------------TA--------------------------AGGCTCTC--------------TGAGTAA---ACCCA---TATTAAACACT-TATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCATAGTC---TGAGAA--GG----CT--ATTTGCCAT-AATTATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACTAGACCCC----TCACGT-TTGACG-----TGGTATTGATGGAA-GTA----AGGCAGA-------------------------AATTGCTTTACTCC-TTCAAAATTGAAA-GGCCGGAAA----AGTGAT--CTTGGT--GACAGACTTGCA-G-------------------AGTGTTGTG-AAAAC------------CTAAATTAGTCTTCA-GTCAG----GTCAGGT-----CC-----------GAGCTTCT-----GGACTCCC-------ATTCAAT-ATA---------AACT-------------------ATTAGA??????????????????????????????????????????????????????????????????????????????????????? Tuber_indicum_A_GB236_China ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------TGATGCT-----------TTGGGA------------------------TACCGT-------------TGTGT----ATTCCTGAACACA------AACCTCCC--------------TGCGTATCA-CTCCA---TGTTGCTTCCA-TGGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGCCACTGTGCTGGTACCTGTGGGAGAT----CT----------CCACATTAA-----------CAGAGTATTTGATTA---CGC----CGTC---TGAGCT--GG----CC--ACGTGTCAG-AT-TTACT--------GAAG-TAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--CACCTTA----TCACAA-CATTTG-----TGGTCTTGGCAGGA-GTG----A-ATTGCTAGTCTATGACAATA-------TTCCAGCTGTCCACCAT-GCTGAAAATTATG-GGAAGGTTA-----CCAGG-CGTGAAC--AACAGACTTTGTAA-------------------AGGGTTGCA--GGAC------------CTGTATCAGTCACCA-GTCAT----GTCTGGT-------------------GCCTTACCTTAGGGACCCCC-------ATCCTAG-ATG---------AACTATG----GGTTGACCTCGAATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_indicum_A_GB240_China ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA--------------------------------------TGAATGCT-----------TTGGGA------------------------TACCGT-------------CGTGT----ATTCCTGAACACA------AACCTCCC--------------TGCGTATCA-CTCCA---TGTTGCTTCCA-CGGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGCCACAGTGCTGGTACCTGTGGGAGAT----CT----------CCACGTTAA-----------CAGAGTATTTGATTA---CGC----CGTC---TGAGCT--GG----CC--ATGTGTCAG-AT-TTACT--------GAAG-TAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--CACCTTA----TCACAA-CATTTG-----TGGTCTTGGCAGGA-GTG----A-ATTGCTAGTCTATGAAAATA-------TTCCAGCTGTCCACCAT-GCTGAAAATTATG-GGAAGGTTA-----CCAGG-CGTGAAC--AACAGACTTTGTAA-------------------AGGGTTGCA--GGAC------------CTGTATCAGTCACCA-GTCAT----GTCTGGT----CCT-----------TACCTTAG-----GGACCCCC-------ATCCTAG-ATG---------AACTATG----GGTTGACCTCGAATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_indicum_B_GB237_China ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA--------------------------------------TAAATACT-----------TTGGGA------------------------TACCAT-------------TGTGT----ATTCCTGGACACA------AACCTCTC--------------TGCGTATTA-CTCCA---TGTTGCTTCCA-CAGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGCTATCATGCTGGCACCTGTGGGAGAT----CT----------TCACATTAA-----------CAGAGTACTTGATTA---TGC----TGTC---TGAGCT--GG----CC--ACGTGTCAG-AT-TTACT--------GAAG-TAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--CACCTTA----TCACAA-TATTTG-----TGGTCTTGGCAGGA-GTG----A-ATTGCTGGTCTATGGAAGTA-------TTCCAGCCGTACACAAT-GCTAAAAAATATG-GGAAGGTTA-----CCAGA-TATGAAC--AACAGACTTTGTAA-------------------ATGGTTGTA--GGAC------------CTAGATCAGTCACAA-GTCAT----GTCTGGT----CCC-----------TAAGGACC-TTAAGGACCCCC-------ATCCTAG-ATG---------AACTATG----GGTTGACCTCGGATCAGGTAGGAATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_indicum_B_JT29410_Oregon ????????????????????????????????????????????????????????????????????????????????????????GGTGAACCTGCGGAAGGATCATTA--------------------------------------TAAATACT-----------TTGGGA------------------------TACCAT-------------TGTGT----ATTCCTGAACACA------AACCTCTC--------------TGCGTATTA-CTCCA---TGTTGCTTCCA-CGGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGCTATCATGCTGGCACCTGTGGGAGAT----CT----------TCACATTAA-----------CAGAGTGCTTGATTA---TGC----TGTC---TGAGCT--GG----CC--ACGTGTCAG-AT-TTACT--------GAAG-TAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--CACCTTA----TCACAA-TATTTG-----TGGTCTTGGCAGGA-GTG----A-ATTGCTGGTCTATGGAAGTA-------TTCCAGCCGTACACAAT-GCTAAAAAATATG-GGAAGGTTA-----CCAGA-TATGAAC--AACAGACTTTGTAA-------------------ATGGTTGTA--GGAC------------CTAGATCAGTCACAA-GTCAT----GTCTGGT----CCC-----------TAAGGACCTTAA-GGACCCCC-------ATCCTAG-ATG---------AACTATG----GGTTGACCTCGGATCAGGTAGGAAT{AC}CCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_liaotongense_OSC87602_China ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TG--CA--AACCCAC----TCATAA-ATATTA-----TGGTATTGATGGAA-GTG----A-ACGGAACCAATCTA-------------TGTGTTCAGGTCATCCC-ATCGAAATGTATA-AGCAGGACA----ATCAAC--CTGTGC--AATGGACTTAGT-A-------------------ACTGTCTTG-AAGAC------------ATAAACCAGTTTGTT-GCTTG----GTTTTGA----CTT-----------AGCTTCCAT----GGACCTCC-------ATCCAAG-ATAATA------AACTCTG----GGTT????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_lyonii_GA21_Georgia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------TGCATAT-----------CTGGGA------------------------TACCAA-------------GAGG-----GTCCCTGAATCCAT-----CTCCTCAC--------------TGTGTACCA-ATCCA---TGTTGCTTTCC-CAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCCTGGGAGAGGT----CC----------AACCCAACA-------------------CCAATAATTGAGTCCGCAGTC---TGAGTA--GG----CC--TAGCGCCTTGAATGTTTGA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCTTGGTATTCCTTGAGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCTC----TCATAG-TTATTA-----TGGTATTGATGGAA-GTG----A-ACTGTGTCTATTTA-------------TGTACTCACACCACTCC-ATTGAAATGAATA-GGCAGGACA----AGTGAC--AACTGC--AATGGACTTAGTAA-------------------ATGGTTTTC--AGAC------------ATGGACCAGTTCTTT-GCTAT----GTTGTAC------------------AGCCTGTATCCATGGACTCCC-------ATCCAGT-AAG---------CACCTTG----GGTTGACCTCGAATCAGGTAGGGATACCCGCTGA-ACTTAAGCATA??????????????????????????????????????????????????????????? Tuber_lyonii_OSC58244_Texas ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------------------------------------------------------------------------------TAAGGTTCCTGATCCAT------CTCCTCAC--------------TGTGTACCA-ATCCA---TGTTGCTTTCC-CAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCCTGGGGGAGGT----CC----------AACCCAACA-------------------CTGATAATTGAGTCTGTAGTC---TGAGTTA-GG----CC--TAGAGCCTAGAACTTTTAA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTGGGGCATGCCTGTTTGAGCGTCAC-TA--CA--AACCCTC----TCATAG-ATATTA-----TGGTATTGATGGAA-GTG----A-ACTGTGTCTACTGG-------------TGTACTCGCACCACTCC-ATCGAAATGAATA-GGCAGGATA----GGTGGC--AACCGC--AAGCGACTTGATAA-------------------ACGGTTTTC--AGAC------------ATGGACCAGTCCTTT-GTTAT----GTTGCGC------------------AGCCTGTATCTATGGACTCCC-------ATCCACT-AAG---------CACTTTG----GGTTGACCTCAAATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_macrosporum_JT13362_Italy ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TTCAGGTTCCCCGAGCAAA------CAACCCCA--------------TGTGTACAC-TTCCA---TGTTGCTTCCC-CAGGC---------------------CAGCGGCCAC-TGCTGCCAGCCCGACCCCTCCGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCGACCACGGGCTGAGGTGCCTGGGGGAGGG----CC----------CATCCCCAA------------CACGTCGCTCATCA--AAGC----AGTC---TGAGCA--GG----CA--GTCGGCCTG-AATCAAGTA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAA-TA--CA--AACCCCCC---TCACCC-TCCTGG-----TGGTGCTGGCGGAG-GTG----G-GTCGCCCTCCC----------------GGCGACAGGCCCACCCC-GTCGAAACTCATG-GGCCCGAGA----GCCGAC--GGCTGC--GACTGACATTCC-A-------------------AGCGCTTTG-AAAGC------------CAGAACCAGTCCGCG-CCGAA----GTCTCGC-------------------------------GGTGCCCC--------------------------------------ACTGGGCCTCCCGTC---CAGCGCAACACTCTGG-GTT??????????????????????????????????????????????????????????????????? Tuber_magnatum_GB12_Italy ???GGAGGTTGGCACGGCCACTGCGGGGCGCAAAGTTGGTCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------CACATGT-----------CGGGGG------------------------CGCCAA----------------GGATGCGTCTCCGAATCCTG-----AATATCTC-------------CTGTGTACCA-TGCCA---TGTTGCTTCCC-CAGGG---------------------TCACGGTCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCCGCCTGGGAGGAGG-----------GCACAGTCCCAAAA----------------ACTACTGTCATCCTACCAGCAGTC---TGAGAAAGGG----CCCATCAGGCCTGACAAACTTAA-------ACAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTTGAGCGTCAC-TG--AA--AACCCAC----TCACGGAATCACG-----TGGTGCTGATGGAG-GTG----GCTTGGTACCGCAGCGGCG----------GTGGCCGGGTCCACCCT-GTCGAATTTCATT-GGGAGGATG-----ACGGACCCCCGGC--TGCTGACTTTGTAGAC-----------------ATCGCCTTG--AAAT------------GCGTGCTAGTTGCCA-GTCAG----GCCCGGT----CCTGCACGCTTGAGGATCCCTGCCATGGGATCCAC------TGTCCAACTG----------------------GGTTGACCTCAGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_magnatum_GB13_Italy TGCGGAGGTTGGCACGGCCACTGCGGGGCGCAAAGTTGGTCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------CACATGT-----------CGGGGG------------------------CGCCAA----------------GGATGCGTCTCCGAATCCTG-----AATATCTC-------------CTGTGTACCA-TGCCA---TGTTGCTTCCC-CAGGG---------------------TCACGGTCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCCGCCTGGGAGGAGG-----------GCACAGTCCCAAAA----------------ACTACTGTCATCCTACCAGCAGTC---TGAGAAAGGG----CCCATCAGGCCTGACAAACTTAA-------ACAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTTGAGCGTCAC-TG--AA--AACCCAC----TCACGGAATCACG-----TGGTGCTGATGGAG-GTG----GCTTGGTACCGCAGCGGCG----------GTGGCCGGGTCCACCCT-GTCGAATTTCATT-GGGAGGATG-----ACGGACCCCCGGC--TGCTGACTTTGTAGAC-----------------ATCGCCTTG--AAAT------------GCGTGCTAGTTGCCA-GTCAG----GCCCGGT----CCTGCACGCTTGAGGATCCCTGCCATGGGATCCAC------TGTCCAACTG----------------------GGTTGACCTCAGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_magnatum_JT19460_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AGGA------------------------TGC-------------------------GTCTCCGAATCCTG-----AATATCTC-------------CTGTGTACCA-TGCCA---TGTTGCTTCCC-CAGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACGGTCACTGTGCCGCCTGGGAGGAGG----GCACAG------TCCCAAAAA-----------------CTACTGTCATCCTACCAGCAGTC---TGAGAAAGGG----CCCATCAGGCCTGACAAACTTAA-------ACAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTTGAGCGTCAC-TG--AA--AACCCAC----TCACGGAATCACG-----TGGTGCTGATGGAG-GTG----GCTTGGTACCGCAGCGGCG----------GTGGCCGGGTCCACCCT-GTCGAATTTCATT-GGGAGGATG-----ACGGACCCCCGGC--TGCTGACTTTGTAGAC-----------------ATCGCCTTG--AAAT------------GCGTGCTAGTTGCCA-GTCAG----GCCCGGT----CCT-----------GCACGCTTGA---GGATCCCT------------------------------------------GCCATGGGATCCACT----------------GTCCAACTGGGTT????????????????????????????????????????????????????????? Tuber_malacodermum_JT32319_Spain ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------TGCATCT-----------AGGGGA------------------------TACCAA-------------TGAG-----TTCCCTGAAGTGAAA----GCCCTCCA--------------TGTGTACCA-ATCCA---TGTTGCTTTCC-CAGGTTGTTGGTCACGGGTCGCCAGCCATCGCTCAA-TGGTGTCCACTGGTTGAGTGCATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGGCTAAAGTGCTCCGTAGAATCCGTTCCTTCAGTTACTCGGTTGAAAAACGCCGCCATTTAGTCCGTAGGGATCCCCGTGAGCACCTGGGAGAGGG----CC----------TATCCAAAT-----------CGATTATTTTTGATC---AGC----TGTC---TGAGTT--GG----CC--AAGTGCCAT-ATTCTTTGA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCCT----TCATAA--TATTA-----TGGTATTGATGGAT-GTG----A-ACTGTGGCAACCAG-------------TGTCCCTGGATCACCCT-GTCGAAATGTATG-GGCAGGACA----ATCAAC--CTCTAC--AATAGACTTAGT-A-------------------ACTGTTCCA-AAGAC------------AAGAGACAGTCCCTT-GCAGG----GTTGTGG----CCT-----------CGCCTCCAT----GGACCTCC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_melanosporum_GB200_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????GCGGAGGTCATTA---------------------------------------TGAATGCT----------TTGGGA------------------------TACCGT-----------------TGTGTATTCCCGAACACA------AACCTCTC--------------TGCGTATCA-CTCCA---TGTTGCTTCCA-CAGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTGACCATGCTGGCACCTGTGGGAGAT----CT----------CTATGTTAA--------------CGGAGTATTTGATTGTGC----TGTC---TGAGCT--GG----CC--ATGTGTCAG-----ATTTA-----GTAAAG-TAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--CACCTTA----TCACAA-AGTTTG-----TGGTCTTGGCAGGA-GTG----A-ATTGCTAGTCTATCAAAATG-------TTCCAGCTGTACACTCT-GCTAAAAATTATG-AGAAGGTTA-----CCAGG-CATGAAC--GACGGACTTTATAA-------------------ACGGTTATA--AGAC------------CTGGATCAGTCACAA-GTCTT----GTCTGGT----CCT-----------TACCTTAA-----GGACCCCC-------ATCCTAG-ATG---------AACTATG----GGTTGACCTCGAATCAGGGAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_mesentericum_CW105_Sweden ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------CAACAGC-----------CGGGGA------------------------CGCCCC-------------ATGGGCGGCACCCCTGAGCACCAA----ACCACAGC--------------TGCGTACCA-TGCCG---AGTTGCTTCCC-CGGGC---------------------CGGCGGCCGT-CGCCGCCCGCCGTGCGAGTCGCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGGCTCGCCCGGCGGAGGCGCCCGGGGGTGGT----TGGGGTCCAGCCCCGACGTGA-----------AAAACGCTTTGGACGGATAACGAGAAGTC---TGAACCCGGCGCC-CTCTTGGGGCCGCCAACCT---------GAAAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCAGGGCATGCCTGTCCGAGCGTCAG-TG--CA--AACCCCC----TCACGGAAACCCG-----TGGTCCTGGTGGAG-GTGGAGAGAGTCGGGCTCCCC---------------AGCCCGGCCGCCACCCC-GCCCAAATGAAAG-GGGAGGAAC--------GCGTGTCCGCGGACCCGACTTGGT-A-------------------GACGTTGTGATAAGC------------GTAGAGCAGTCGTGC-GCCGT----CCACGGT----CCC-----------TCCCGCCT----CGAGCCCCC-------AC-----------------------------AGTGGGCCGCCGA--------GGGTCTTCTCAGG??????????????????????????????????????????????????????????????????????? Tuber_multimaculatum_OSC62169_Spain_paratype ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA----------------------------------------ATATAT-----------TTGGGA------------------------TACCCT----------------TACAGGTTCCCTATCCTTTA-----AACCTCTC--------------TGTGTACCA-ATCCA---TGTTGCTTTCCTCAGAT---------------------CAGCAGCCAC-TGCTGCCTGTATAGTTCACAATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAATATACAGAGGTATCTGGGGGAGGG----TC----------TTCTTATAA-------------CTCATATTGTTAACCATGC----AGTC---TGAGTT--GG----CT--GAATACCATACATATCTTG-----AATAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCTCAC---TCACAA-CAATTG-----TGGTAATGGTAGGA-GTG----G-ATTATTATGACAAA-------------GTCACCAGTCACACCCT-ACCGAAATGCATT-GGGCGGACT----TTTAGG--CTTAGT-GAAGAGACTTAGT-A-------------------CATGTTCAA-AGAAT------------ATATAATAGTCTCAT-GCTAG----GTTAGGT----CCT-----------GCCTGCCT-----GGACCTCC-------ATCTGGT-TTA---------TATACTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_nitidum_BM105_Spain ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GAATC---AGC----AGTC---TGAGTT--GG----CC--CAGTGCCGT-CTTCTTTGA------ATAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCCC----TCATAT-GTATTA-----TGGTATTGATGGAT-GTG----A-ACTCAGGCCTAGAA-------------TGCACCTCAGTCACCCC-GTCGAAATGCATA-GGCAGGACA----ATAAAC--CTCCGC--AAGGGACTTAGT-A-------------------AATGTTATG-AAGAC------------ATAAACCAGTCCGTC-GCTCG----GTTCTGTT----CT-----------GGCCTCCAC----GGACCTCC-------ATCCGAC-ATG---------AAATCTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTT?????????????????????????????????????????????????????????????????? Tuber_oregonense_GB284_Oregon_holotype ???????????????????????????????????????????????????????????????????????????????????CCGTAGGTGAACCTGCGGAAGGATCATTA--------------------------------------CCATATCA-----------CTGGGA------------------------TGCCCT-------------GATGGGCT------------------------------------------CATTTAGTAAACTCA---TATTAAACACT-TATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---------------------------CTTAC----AGTC---TGAGAA--GG----CC--ATAGGCCGT-AATCATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACTATACTTC----TCACGT-CTGACG-----TGGTATTGGTAGAA-GTG----GTGCAGA-------------------------AATTGCTCCACTCC-TCTAAAATTGAAA-GGCCGGAAA-----ATGAT--CTCGGT--GAGAGACTTGTA-G-------------------AGTGTTATG-AAAAC------------CTAAATCAGTCTTCA-GCCAG----GTTGAGT----CCG-----------TGCTTCT------GGACCCCC-------ATCC--------------------------------------------------------------ACAGTAACATATTAAA?????????????????????????????????????????????????????? Tuber_oregonense_JT27985_Oregon_paratype ???????????????????????????????????????????????????????????????????????????????????CCGTAGGTGAACCTGCGGAAGGATCATTA--------------------------------------CCATATCA-----------CTGGGA------------------------TGCCCT-------------GATGGGCT------------------------------------------CATTTAGTAAACTCA---TATTAAACACT-TATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---------------------------CTTAC----AGTC---TGAGAA--GG----CC--ATAGGCCGT-AATCATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACTATACTTC----TCACGT-CTGACG-----TGGTATTGGTAGAA-GTG----GTGCAGA-------------------------AATTGCTCCACTCC-TCTAAAATTGAAA-GGCCGGAAA-----ATGAT--CTCGGT--GAGAGACTTGTA-G-------------------AGTGTTATG-AAAAC------------CTAAATCAGTCTTCA-GCCAG----GTTGAGT----CCG-----------TGCTTCT------GGACCCCC-------ATCCACA-GT-------------------------------------------------------------AACATATTAAA?????????????????????????????????????????????????????? Tuber_oregonense_JT30493_Oregon_paratype ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGGCTC?T--------------TTAGTAA---ACTCA---TATTAAACACT-TATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---------------------------CTTAC----AGTC---TGAGAA--GG----CC--ATAGGCCGT-AATCATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACTATACTTC----TCACGT-CTGACG-----TGGTATTGGTAGAA-GTG----GTGCAGA-------------------------AATTGCTCCACTCC-TCTAAAATTGAAA-GGCCGGAAA-----ATGAT--CTCGGT--GAGAGACTTGTA-G-------------------AGTGTTTTG-AAAAC------------CTAAATCAGTCTTCA-GCCAG----GTTGAGT----CCG-----------TGCTTCT------GGACCCCC-------ATCCACAG------------TAACATATTAAAGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGC?????????????????????????????????????????????????????????????? Tuber_panniferum_JT12835_Spain ???????????????????????????????????????????????????????????????????????????????????????AGGTGAACCTGCGGA{AG}GG{AG}TCATTA---------------------------------------AACAAGC-----------TTGGGA------------------------CCCCGG-------------AAAGG{CT}GG{CG}CTCCCTGCGCGTCAA----ACCACATC--------------TGCGTACAC-TGCCA---TGTTGCTTCCC-CAGGC---------------------CGGCGACCGC-GCTCGCCCGTCAGCGTGGCGCTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCCTCGCCTCGTCGGAGGTGCCTGGGGGTGGG----GGTCGG------TACCCTCAT-----------CAAGTTTAACCACTGTTTGACCGTCAGTC---CGACCA--GG--------TGGAGCCGCGAGGCCACCGACTCGAAATAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCAGGGCTTGCCTGTCCGAGCGTCAG-TG--CA--AACCCGC----TCACGGAAGTCCG-----TGGTTCTGACGGAG-GTGGAACGTGTTGGGCTCGCC---------------GCCCGGCCGGCCACCCCAGTCCAAATCAATG-GGGCGGAGG------AAGCGTGGCATC--GCCCGACTTGGT-A-------------------GACGTCTTGATAAGC------------GTATGACAGTCGGAA-GC-------GGTCAAC-------------------------------GGTCCCGC-----------------------------------------CCGCCACGCGTCAGTTGTGGC-----------GCCTTGGCATCTTCATCAGGTTT??????????????????????????????????????????????? Tuber_pseudoexcavatum_CJ408_China ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------TTGATAT-----------CTGGGA------------------------TATCTT-----------------TACAGATTCCCAATTACA------AACCTCTC--------------TGGTTATTA-GTCCA---TGTTGCTTTCA-CAAGT---------------------TAAGAGACAT-TCTTGCTTGCCAGTTGTAGCTGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCATACTTGGGTAGCAGATCATTACATTGTAACCAATTCATGTATGCTACTACTGCTTGCGCTTTAGTACTATACAGGCACTTGTGAAAGGT----CT------------------------------CAACTAAGCTTTAAATTATGT----GGTC---TGACTT--GG----CC--AAGTGCCAT-ATCTCT----------TAAG-TGAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGCTCGAGCGTCAC-AG--AA--AACCCCA----TCACAG-TTCCTG-----TGGTCTTGGTATGA-GTG----G-GTTGATAGTATGTGGAGA---------CATGCTTATAACACTCT-ACTGAAATTTATA-GACAGGATA-----CCGGA-TATGGGC--AATAGACTTTGT-A-------------------AATATCCAC-AGGAT------------ATATATCAGTCATGT-GTCAT----GTTTGGT--------------------CCTGATATTATGGACTCCT-------ATTCTAT-ACA---------AACATTG----GGTTGACCTCGAATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_regimontanum_ITCV909_Mexico_holotype ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------TGATGCT-----------TTGGGA------------------------TACCAT-------------TATGG----GTTCCTGATCACAA-----AACCTCTC--------------TGCGTATCA-ATCCA---TGTTGCTTCCA-CAGGT---------------------CAAGAGAAAT-TCCTCCTCGACTTGTTTAGCTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCTTTCGTCATGGCTATGCAAGCACCTGTGGTAGAT----CT----------CAATTTCAA-----------CCAAGTATTTGATCA---TGC----TGTC---TGACCT--GG----CC--ATGTGTCAG-ATTTATT---------TAAG-TGAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TG--CA--CACCTTA----TCACAA-AATTTG-----TGGTCTTGGTAGGA-GTG----A-ATTACTGGTCCATGAAAATG-------TTCCAGTTGTACACCTT-GCTGAAATTTATA-GGAAGCTTA-----CCAGG-CATGAAT--AACAGACTTTGTAA-------------------ACGGCCATA--GGAC------------CTGAATCAGTCACAA-GTCAT----GCCAGGT----CCT-----------TACC-----TTAAGGATCCCC-------ATCCTAT-ATG---------AACTATG----GGTTGACCTCGAATCAGGTAGGG?????????????????????????????????????????????????????????????????????????????????? Tuber_rufum_GB213_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------TACATAC-----------AGGGGA------------------------CGTTTT-------------AGCG-----TTCCCGGACCCAA------ACCCTCTC--------------TGTGTACAA-ATCCA---TGTTGCTTTCC-CAGGT------------------GGTTGGTGGCAGC-AGCTGTCCAACTCTGCCTGTATAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACCTCTTTGGATGAACTATGCAGGCCCCTGGGAGAGGG----CC----------TATCCTGAG---------------CCAATTATTGAATTAGC----TGTC---TGAGTT--GG----CC--CAGTGCCAT-TTTCTTTAA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTGGGGCATGCCTGTTTGAGCGTCAC-TG--CA--AACCCGC----TCATAA-ATATTA-----TGGTTGTGATGGAA-GTG----A-ACTGAGGCTATCAG-------------TATGCCTGGGTCACCCT-GTCGAAATTCATA-GGCAGGACA----ATTAAC--CACTGC--AATGGACTTAGT-A-------------------ACTGTTTCA-AAGAC------------ATCAACCAGTCCCTT-GCTAG----GTGCTGG----CCT-----------GGCCTCCAT----GGACCTCC-------ATCCAAG-ATA---------AACTCTG----GGTTGACCTCGGATC?????????????????????????????????????????????????????????????????????????????????????????? Tuber_sancarloensis_ITCV181_Mexico_holotype ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA------------------------------------------------------------------------------------------------------------------------------------------------------TTATAATGCGTGAAA-----A---TGCCCCTAACA-CGGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTCTAGAAAACT----CT----------------AAA---------------------------CTTAC----AGTC---TGAGAA--GG----CC--ATGGGCCAT-AATCTTTAA------ACATT-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCATAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCCCA----TCACAA-AGAGTG-----TGGTATTGGCAGAA-GTG----G-GTAGGGCTGGC----------------AGTGTTGGCCCCACTCT-GCTGGAATGAATA-GGCCGGAAA----TGTAGA-CCATGAT--AACAGACTTTCA-G-------------------AGTATCCCC-TGATG------------CTAAATTAGTTTGTA-GGCTG----GTCAGAA----TCC-----------AGGTCGTT-----GGACCCCC-------ATTCTGT-GTAAAGCAGTAA-----------TGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_sancarloensis_ITCV885_Mexico ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA------------------------------------------------------------------------------------------------------------------------------------------------------TTATAATGCGTGGAA---------TGCCCTTAACA-GGGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTCTAGAAAACT----CT----------AAACTTAAA-------------------------------------GTC---TGAGAA--GG----CC--ATGGGCCAT-AATCTTTAA------ACATT-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCATAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCCCA----TCACAA-CGAGTG-----TGGTATTGGCAGAA-GTG----G-GTAGG----------------GCTGGCTGTGCTGGCCCCACTCT-GCTAGAATGAATA-GGCCGGAAA----TGTAGA-CCATGGT--AACAGACTTTCA-G-------------------AGTATCTCG-TGATG------------CTAAATTAGTTTGTA-GGCTG----GTCAGAA----TCC-----------AGGCTGTT-----GGACCCCC-------ATTCTGT-GTAAAGCAGTAA-----------TGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_shearii_JT12498_North_Carolina ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGGG-----------------------------------------------------TTCCCAAAACAAA------CACATTCA--------------TGTGTATCC-TCCCA---TGTTGCTTTCC-CAAGC---------------------CAGTGGCCAC-TGCTACCAGCCAGTCCATTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTTCAGGTTGAGGTGCTTGGGAAAGGG----TCATTTAACAAACTTTATA-----------------------------TTAACCTATTGTC---TGATGA--GG----CT--ATATGCCAT-AATATGTAA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-----AAACAATCTGA----TCACCA-TATGTG-----TGGTATTGGCAGAA-GTG----G----------------ATATAGTCATGAGTTTCAGACTCCACTCC-GCTGGAATAAATA-GGCTGGAAA----AGTAGA-TCATAGC--AACAGACTTTCA-G-------------------AGTATTTTG-GAATA------------CTAAATTAGTTTAGA-GCAGA----TCAGAAT----CCA-----------GGCCAGT------TGACCCCC-------ATCCTGT-GTA--------------------------------ATGCAGTAAGGTTG??????????????????????????????????????????????????????????????????????????????? Tuber_shearii_OSC51052_North_Carolina ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGA------------------------TGCTCT---------------ATATGGGTTCCCAAAACAAA------CACATTCA--------------TGTGTATCC-TCCCA---TGTTGCTTTCC-CAAGC---------------------CAGTGGCCAC-TGCTACCAGCCAGTCCATTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTTCAGGTTGAGGTGCTTGGGAAAGGG----TCATTTAACAAACTTTATATT-----------------------------AACCTATTGTC---TGATGA--GG----CT--ATATGCCAT-AATATGTAA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-----AAACAATCTGA----TCACCA-TATGTG-----TGGTATTGGCAGAA-GTGGATATAGTCATGA--------------------GTTTCAGACTCCACTCC-GCTGGAATAAATA-GGCTGGAAA----AGTAGA-TCATAGC--AACAGACTTTCA-G-------------------AGTATTTTG-GAATA------------CTAAATTAGTTTAGA-GCAGA----TCAGAAT----CCA-----------GGCCAGTT------GACCCCC-------ATCCTGTG------------TAATGCAGTAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_sp_ITCV884_Mexico ??????????????????????????????????????????????????????????????????????????????????????????????????????????????TA---------------------------------------TACATAT-----------CTGGGA------------------------TACCAA------------------TAAGGTCCCTGAATCCAT-----CTCCTCAC--------------TGTGTACCA-ATCCA---TGTTGCTTTCC-CAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCTGGGGAAGGT----CC----------CAACCCAAC------------------ACTGATAATTGAGTGTGTAGTC---TGAGTA--GG----CC--CAGTGCCTTGAAATTTTAA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCTC----TCATAG-ATACTA-----TGGTATTGATGGAA-GTG----A-ACTGTATCCATTGG-------------TGTACTCACACCACTCC-ATCGAAATGAATA-GGCAGGACA----AGTGGC--AACTGC--AATCGACTTAGTAA-------------------ATGGTTTTC--AGAC------------ATGGACCAGTCCTTT-GCTAC----GTTGCAC------------------AGCCTGTATCCATGGACTCCC-------ATCCAGTGAG----------CACTTTG----GGTTGACCTCGAATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_sp_ITCV908_Mexico ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TCTCCTCAC--------------TGTGTACCA-ATCCA---TGTTGCTTTCC-CAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCCTGGGGAAGGT----CC----------AACCCAACA-------------------CTGATAATTGAGTGTGTAGTC---TGAGTA--GG----CC--CAGTGCCTTGAAATTTTAA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCTC----TCATAG-ATACTA-----TGGTATTGATGGAA-GTG----A-ACAGTATCCATTGG-------------TGTACTCACACCACTCC-ATCGAAATGAATA-GGCAGGACA----AGTGGC--AACTGC--AATCGACTTAGTAA-------------------ATGGTTTTC--AGAC------------ATGGACCAGTCCTTT-GCTAC----GTTGCAC------------------AGCCTGTATCCATGGACTCCC-------ATCCAGTGAG----------CACTTTG----GGTTGACCTCGAATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_sp_ITCV910_Mexico ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTGTTCCTAGTTCTC------ATCCTCCC--------------TGTGTACCA-ATCCG---TGTTGCTTTCC-CAGTT--------GGGTTGGTATGAGCTGTGGTTCAACTTTACCTGCTTAGCCCTGTCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAGGTGTTAAAGTCACTACTTTGCTCTTAGTATCTTCCTGAAAGAATGTGCTTTCAAAGTTGCAGGCTACATTCAGAGCAAGTGCTATGTGGGACCACTGGGAAAGG----TT----------TTACTTAAA------------------GCTGATTATAAAATTGAATGTC---TGAGAT--GG----CT--TATGGCTATGTACTTTTGA------ATAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCCCTTGGTATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCTA----TCATAA-ATATTA-----TGGTACTGATGGAA-GTG----A-ATCATGGCTATTAA-------------TGCTTCTGGTCCACTCT-GTTGAAATGCATA-GGCAGGACA----ATCAAC--CTCTAC--AGCAGACTTAGT-A-------------------ATTGTTTTA-AAATC------------ACAAATCAGTCATGT-ACCA?----GTTTGGG----CCT-----------GTCCTCTTT----GGA???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp_JT13224_West_Virginia ????????????????????????????????????????????????????????????????????GT?GTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------TTCATAT-----------ATGGGA------------------------CATACA-------------AGTG-----TTTCCTGACCCAA------ATCCTCTT--------------TGTGTACTT-ATCCA---TGTTGCTTTCC-CAGGT-------------------------GGTTGG-TTTTACTAGTTGTTTAACCCTTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTAGTTGAGTTAACTTTACTATGTAGGCTCCTGGGAGAGGG----CC----------TATTTCAAG---------------CAAACTATTAAATCAGT----TGTC---TGAGTT--GG----CC--TAGTGTCAT-ATCTTTTTA-----AATAAA-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCAC----TCATAA-ATATTA-----TGGTAATGGTGGAT-GTG----A-AAGGAGGCTACTAG-------------TATGTCTCAGTCACCCC-ATTGAAATACATA-GGCAGGACA----ATTATC--TTTAGC--AAAGGACTTAGT-A-------------------ACTGTTATG-AAAAC------------ATATATTAGTTTCTT-GCTAG----GATTTGG----ACT-----------GACTTCTAT----GGATCTCC-------ATTAAAG-ATA---------AATTCTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_sp_JT28121_Japan ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CTTCTTGGACACCACATTGTGGGTCCT--------------TGTGTCAATGTACCT---TTTTTCTTTTT-TATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGTAAA------------------------------ACTAGCAGTC---TGACTA--GG----CC--ATGTGCCTT-TTTAATGAA------ATAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATTGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCTC----TCACATTGTAATAATGTGTGGTATTGGCAGAA-GTC----GTAGGGACCT-------------------TTCCCAGAATCCACTCT-GCTGAAATATATC-GTGCAGATA----TCCCAT--ACTGGT--AAATGACTTTTTTATGCTAAAGCGTTC------AACGCTCTCCAGCAC------------TTGAGTCAGTTGGCCAT--------TGGTAGA----ACC-----------GCACGTTATCA--GGACCCCC-------ATCCTTT-GTATAT------ATCTTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGG Tuber_sp_JT32567_Mexico ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGGGA------------------------TACCAA-------------AGTG-----TTCCCTAACTTGA------ACCCTCTC--------------?GTGTATCA-ATCCA---CGTTGCTTTCC-CGGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGGCCTTCCAGGCTTCCGGGAAAGGT----CCCGTAGAAATCTATTGATTA-------------------------AATTGGC----TGTC---TGAGTT--GG----CC--CAGGGCCAT-AATCTTTGA------AAATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TG--CA--AACCCGC----TCATAG-CTATTA-----TGGTATTGATGGAA-GTG----A-ACTGTGGCAACTGA-------------TGCGCACTGTTTACCCT-ATCGAAATGCATA-GGCAGGAAG-----ATGAA-CTTCCGT--ACAGGACTTGGT-A-------------------ATTGTTTTT-AAGAC------------ATAAATTAGTCCCTT-GCGGT----GTTCTGA----CCT-----------AGCCTCCAA----GGACCTCC-------ATCCAAG-ACA---------AACAGAG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_sp_JT8755_Florida ??????????????????????????????????????????????????????????????????????????????????????????????????????GCTC??ATGA-------------------------------------------------------------------------------------------------------------------GCTCTCAAATAAA------CACATTCA--------------TGTGTATAC-TTCCA---TGTTGCTTTCC-CAGGC---------------------CAGTGGCCAC-TGCCACCAGCCAGTCCATTATTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTTCAGGTTGAGGTGCTTGGGAAAGGG----CCAATTATCAAACTTCTTTAT--------------------------ATTAACCTATTGTC---TGATGA--GG----CT--ATATGCCGT-AATATGTAA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAT-----AAACAATCTGA----TCACCA-TATGTG-----TGGTATTGGCAGAA-GTG----G----------------ATATAGTCAAGAGTATTGGACTCCACTCT-GCTGGAATGAATA-GGCTGGAAA----AGTAGA-TCATAGC--AATAGACTTTCA-G-------------------AGTATCTTA-GAATG------------CTAAATTAGTTTGGA-GCTGA----TCAGAAC----CCA-----------GGCCAGTT------GACCCTT-------ATCCTGT------------------------------------GTAAAGCAG-----------------TAAGAATG??????????????????????????????????????????????????????????? Tuber_sp_RH73_Iowa ????????????????????????????????????????????????????????????AAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------GACATAT-----------CTGGGA------------------------TGCCAT-------------TCTGG----GTCCCCGACTCCA------AACCCCTC--------------TGTGTACCA-ATCCA---TGTTGCTTCCA-CAGTTTAAGAGTTCCTCTGTGGGTGGCATTTGCCAT-CGTTGCCTGCTCTGGTTGTTGACC--------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTCCGTTGTTGCCGTCTGCTTGAAGTGGATGAGTGCAGCAGCCCAGACTGCTATACCGTGCAGGTATCGCCAGCTATAACCGCCCATATTCAGCCTCCACACTGGTGGAGCTATTGAGGCATCTGTGAGAGGG----TCCAAATCCAACCATGTCTGT------------------------GAACCAGC----TGTC---TGACCT--GG----CC--ATGTGCCGG-ATTCAATAA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATAGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGTGTCAC-TA--CA--AACCCCCC---TCACAG-ATATTG-----TGGTGTTGGTAGGA-GTG----G-GTGACAGGTGCAAT-------------GGTGCCTGTTCTACTCT-GCCGAAATTCATT-GGAAGGACA-----GTGAG-CCTGATA--AGTAGACTTTGT-A-------------------AATGTCCAT-GGGAT------------ATGAATCAGTCTTGT-ACCCG----GCCCAGT----CCT-----------GCCTACCC-----GGACCCCC------CATCCATG-ATG---------AACAATG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCCCA?????????????????? Tuber_sp_RH8270753_Iowa ????????????????????????????????????????????????????????????????????????????????????????????????????????????ATTA---------------------------------------TGCATAA-----------ATGGGA------------------------TACCGA-------------AGCG-----TTCCCTGACTCAA------ACCCTCCC--------------TGTGTATCA-ACCCA---TGTTGCTTTCC-CAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGTCTTTTCAGGCCGCTGGGAGAGGT----CC-----------CATAGAAA-----------TCTATTGATCGAATT---GGC----TGTC---TGAGTT--GG----CC--CAGTGCCAT-ATTCTTTGA------AAATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCCCTTGGTATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TG--CA--AACCCGC----TCATAA-CCATTA-----TGGTGTTGATGGAA-GTG----A-TCTGTAGCAACCAC-------------TGCTTACTGTTCACCCC-ATTGAAATGCATA-GGCAGGATA-----ATGAA-CCTCCTC--ACTGGACTTGGT-A-------------------ACTGTTTTA-GAAAC------------ATAAATTAGTCCCTT-GTGGT----GTTCTGG----CCT-----------GGCCTTCAA----AGACCCCC-------ATTCAAG-GCG---------AATATAG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_sp_TB10248_New_York ??????????????????????????????????????????????????????????????????????????????????????????????????????????????TA---------------------------------------TGCATAA-----------ATGGGA------------------------TACCAA-------------AGCG-----TTCCCTGACTCAA------ACCCTTCC--------------TGCGTATCA-ACCCA---TGTTGCTTTCC-CAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGTCCTTTCAGGCCGCTGGGAGAGGT----CCCATAGAAATCTATTGATCA-------------------------AATTGGC----TGTC---TGAGTT--GG----CC--CAGTGCCAT-ATTCTTTGA------AAATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCCCTTGGTATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TG--CA--AACCCGC----TCATAA-CCATTA-----TGGTGTTGATGGAA-GTG----A-TCTGTAGCAACCAC-------------TGCTTACTGTTCACCCC-ATCGAAATGCATA-GGCAGGATA-----ATGAA-CCTCCTC--ACTGGACTTGGT-A-------------------ACTGTTTTC-GAGAC------------ATAAATTAGTCCCTT-GTGGT----GTTCTGG----CCT-----------GGCCTTCAA----AGACCCCC-------ATTCAAG-GCG---------AATACAG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_sp1_K201_Japan ??????????????????????????????????????????????????????????????????????????????????????????????????CCCGTCCAGCATTC--------------------------------------------------------------------------------------------------------------------------------------ACCCTC----------------TGTGTACCCTTACCG---TGTTGCTTCCC-CAGGC---------------------CAGCGGCCAC-TGCTGCCAGCCACCCGGACCGCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGCGGTCGGGGTCCTGAGGTGCCTGGGGGAGGG----CC----------CAACCGCAC------------AATCCGTCGCTCATCCAAGC----AGTC---TGAGCA--GG----CC--ACCCGCCTG-AG-AAGGTA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAA-TA--GA--AGCCCTTCCAGTCACCC-TCCCGG-----TGGTACTGGGGGAG-GTG----G-GTAGCCCACCA----------------GGCATGAGGCCCACCCCTCCCGAAAGCCATG-GGCCCGCGA----GCCGAC--AGCCGT--CGCTGACTTTGT-A-------------------AGAGCTTGG-AAAGC------------CTGAACCAGTCGGCA-GCGCG----CGTCGGT------C-----------GGCGCCCCAAACTGGACCCCC------AATCCAGCAAGA---------CAATCT-----GGGTGACCTCGGATCA????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp14_K186_Japan ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AATGT-----------GCGGGA------------------------TATCCC-------------ACCGGGG--ACTCCTTAGCGAAA-----CACATTCA--------------TGAGTACAC-TTCCA---TGTTGCTTCCC-CAGAC---------------------CAGTGGCCAC-TGCTACCAGCTCTGTTCTACAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGATCTTGAGTTGAGGCGTTTGGGGAAGGG----CCAACTGTTAAACCTTTGAAC------------------------CATTTAGT----TGTC---TGAGAA--GG----CC--ATATGCCGC-AA-CATTTA----AAACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCCTTTGGCATTCCTTAGGGTATGCCTGTTCGAGCGTCAC-TA---A--AACCGCC----TCACAG-ATAGTG-----TGGTATTGGTAGAA-GTG----G-GCAGTACTAACA---------------GTGCTCTCTCCTACTCT-ACCCAAATGAATA-GGCCAGAAA----AGTGAA-CTATGGC--ATCGGACTCTCA-G-------------------AGTGTTTTC-AAATG------------CTAAACTAGTCTTGC--CTAG----GTTTGAA----TCT-----------GAGCCACT-----GGACCCCC-----CCATTTAGT-CCA---------AACAAAG---AGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAA???????????????????????????????????????????????????? Tuber_sp2_K215_Japan ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CCCT-------------CCCGG----CACCCCGAGCCAGC-----AAACCCCC--------------TGTGTACACTTTCCA---TGTTGCTTCCC-CAGGC---------------------CAGCGGCCAC-CTGCCGCCAGCCCGACCCCTCCCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTCAACCACGGGCTGAGGCGCCTGGGGGAGGT----CC----------CTGCCCCAA-----------CAAAGTGGTTCAATC-AATGC----AGTC---TGAGCA--GG----CC--ACCTGCCTG-AACCAGGTA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAA-TA--GA--AACCCCAC---TCACCC-TCCCGG-----TGGTACTGGGGGAG-GTG----G-GTCGCCCTCCA----------------GGCGCGAGATCCACCCC-CCTGAAAAGCATG-GGCCCGAGA----GACGAC--GGCTGC--GACTGACACTCT-A-------------------AGCGCTTTCTGAAGC------------CAGAACCAGTCCACC-GCCAT----GTCGAGCGGCGCAC-----------CACT---------GGAGCCCC------CATCCAGC-ACAAA-------CACTCTG----GGTTGACCTC??????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp8_K228_Japan ??????????????????????????????????????????????????????????????????????????????????????????????????????????ACATTG----------------------------------------------------------TGGGT------------------------------------------------------CCTTGTGTC------------------------------AATGTACCT---------TTTTTCTTTTT-TATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGTAAA--------------------------ACTAGC----AGTC---TGACTA--GG----CC--ATGTGCCTT-TTTAATGAA------ATAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATTGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCTC----TCACATTGTAATAATGTGTGGTATTGGCAGAA-GTC------GTAGGGACCT-----------------TTCCCAGAATCCACTCT-GCTGAAATATATC-GTGCAGATA------TCCCATACTGGT--AAATGACTTTTTTATGCTAAAGCGTTC------AACGCTCTCCAGCAC------------TTGAGTCAGTTGGCC-ATTGGTAGAACCGCACGTTATCA------------------------GGACCCCC-------ATCCTTT-------GTATATATCTTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAG?????????????????????????????????????????????? Tuber_sp9_K214_Japan ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TT-----------CTGGGA------------------------TACCAC---------------TCTGTGGGTCCTTGTGCCAA------ACCCTAAA--------------CATGTACAA-AC------TATTAGAAACA-CTAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTC---TGACTT--GG----TA--ATATGCCAT-TTTAATAGA------ATAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATTGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--TA--TACCCTC----TCACAT-ATAATG-----TGGTATTGGCCAAA-GTG------GTGGGAAATA-----------------CTCCCATAAGTCACTAT-GCCAAAATTTATT-GCACGGACA----ACTAAT--ACCGCC--AACTGACTTTGT-A-------------------AGCATTATTGAGCAT------------GTAAACCAGTCAGGA-GTCGGTGAAGTTGGGCAAACCTT------------------------GGACCCCC-------ATCCAGT-------------ATAATTTTCTTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAA???????????????????????????????????????????????????? Tuber_sphaerosporum_JT12487_Oregon ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TTGGGC------------------------------------------------------TCCCAAGCAAA------CACATCCA--------------TGTGTACTC-TCCCA---TGTTGCTTCCC-CAGAC---------------------CAGTGGCCAC-TGCTGCCAGCCCAGTTCCCTAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTGGCCTGAGGTGTCTGGGGAAGGG----CTCAATATCAAACCTTCAAAC------------------------TAATTAGT----TGTC---TGACAA--GG----CC--ATGTGCCGT-AATCTTTAA-----AACATA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCTTC----TCACAT-ATAATG-----TGGTATTGGTAGAA-GTG----A-ATAGTACTACTA---------------GTGCTTTGTCTTACTCT-ACTGAAATGAATA-GGCCAGAAA----AGCGGA-CCATGGT--AATAGACTCTCA-G-------------------AGTGTTTTA-AAATG------------CTAAATTAGTCTC---GCCAT----GGTTGAT---ATCT-----------GAGCCATT-----GGACCCCC---------------------------------------ATTTAGTCCAAACCAGAGAG???????????????????????????????????????????????????????????????????????????????????? Tuber_sphaerosporum_JT19772_Oregon ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TCGGAT------------------------CTCCCA-----------------TCGGGGCTCCCAAGCAAA------CACATCCA--------------TGTGTACTC-TCCCA---TGTTGCTTCCC-CAGAC---------------------CAGTGGCCAC-TGCTGCCAGCCCAGTTCCCTAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTGGCCTGAGGTGTCTGGGGAAGGG----CTCAATATCAAACCTTCAAAC------------------------TAATTAGT----TGTC---TGACAA--GG----CC--ATGTGCCGT-AATCTTTAA-----AACATA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCATC----TCACAT-ATAATG-----TGGTATTGGTAGAA-GTG----A-ATAGTACTACTA---------------GTGCTTTGTCTTACTCT-ACTGAAATGAATA-GGCCAGAAA----AGCGGA-CCATGGT--AATAGACTCTCA-G-------------------AGTGTTTTA-AAATG------------CTAAATTAGTCTC---GCCAT----GGTTGAT-------------------ATCTGAGTCATTGGACCCCC-------ATTTAGTC------------CAAACTAGAGAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? Tuber_spinoreticulatum_U188_Maryland_isotype ??????????????????????????????????????????????????????????????GTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------TACATAT-----------GTGGAA------------------------CTCCAA-------------GTGGGTTC?GACACCATGTT--------AACCTC----------------TGTGTACCG-AGCCA---TGTTGCTTTCC-CAGGC---------------------TACCTACTGT-TGGTATCCACCTGCTCTTCCCTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGTTGAGCTGTGTGGGTTTCCTGGGAAAGG----TA----------TAATATAAA-------------TGCTAATTGTTGAACAAGC----TGTC---TGAGGA--GG----CC--CAGTGCCGC-ATATTTTGA------ATAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCTTGGTATTCCTTGAGGCATGCCTGTTCGAGCGTCAC-----AATTACCCCTG----TCACGG-ATCTCG-----TGGTGTTGATGGTA-GTG----G-ATTCCAGTCACTGATG-----------TGTGGCTATACTACTCC-AT?GAAATGAATA-GGGAGGACT----ACTGGC--CTCAGC--AATGGACTTAGT-A-------------------AATGTTTTC-AGAAT------------GTAAACCAGTCTTGT-GCCAG----GTCTGGT----CCG-----------GTC?TACT-----GGATCCCG------CATCCAAC-ATG---------TATTCT-----GGGTGACCT???????????????????????????????????????????????????????????????????????????????????????????????? Underwoodia_beatonii_JT28375_Australia ??????????????????????????????????????????????????????????????????????????????????????????????????????????TCCGTCTCCAG?ATTTGGAAAAGGGA?CAGGGTGGGGGGA?CCGTCGCCAGG-----------GGGGGAATGCTGGTGGTCGTCCACCTCTTGTGCCCCCCCAGCAACGATGCGCGGTCCACTCACCCGCCCTTACCAAAACCCTGTC--------------CGCGTACCT-CTCCA---TGTTGCTTCCC-CGGGA--------------CCAAGTGCGGAGCCCTTACGGTGGTGATCGGGACCCCTCGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTCGCCGCTGGGACCGAGTACCCCGGGGAAGGTACCCCCCAAAATCAATCGCTCTGAA---------------------------CCAGC----TGTC---TGACACA-GG----CCCACAAGGCCTTTGGTATACAA------ATACTCTCAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--ACCCCCCC---TCACACTTGCTTG-----TGGTGGTGGCGTCG-GTGG---GTACTGGGAACCGTGAGT-----------CCCCTCTTACCCACCCC-GCCGAAATCGAT--GGGCGGACA----ACTGAT--CTCAGC--TGCTGACTTAGT-----------------------------AAAAATCGACCTTGC------------------------------------------------------------------AGGGCCCCC-----------------------------------------------CGGGCCCGTCAGGCATC??????????????????????????????????????????????????????????????????????????????? Underwoodia_beatonii_JT28380_Australia ???????????????????????????????????????????????????????????????????????????????TAGTCCGTCTCCAGATTTGGAAAGGGATCAGGG------------------------------------TGGGGGGACCCGTCGCCAGGGGGGGAATTGCTGGTGGTCGTCCACCTCTTGTGCCCCCCCAGCAACGATGCGCGGTCCACTCACCCGCCCTTACCAAAACCCTGTC--------------CGCGTACCT-CTCCA---TGTTGCTTCCC-CGGGA--------------CCAAGTGCGGAGCCCTTGCGGTGGTGATCGGGACCCCTCGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTCGCCGCTGGGACCGAGTACCCCGGGGAAGGTACCCCCCAAAATCAATCGCTCTGAA---------------------------CCAGC----TGTC---TGACACA-GG----CCCACAAGGCCTTAGGTATACAA------ATACTCTCAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--ACCCCCCC---TCACACTTGCTTG-----TGGTGGTGGCGTCG-GTGG---GTACTGGGAACCGTGAGT-----------CCCCTCTTACCCACCCC-GCCGAAATCGAT--GGGCGGACA----ACTGAT--CTCAGC--TGCTGACTTAGTAAAAATCGACCTTGC------AGGGCCCCCCGGGCCCGTCAGGCATCAATCAAACAGTCAGGA-GTTAG----GTTACGT----CCC-----------GTCCCTC????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Underwoodia_singeri_mes161_Chile ??????????????????????????????????????????????????????????????????????????????????????????????????????????TCATTAACACGACCCGCCAGTGGAAAAGGGACTTGGGCGATCTGGCCTGCTG-----------CTGAGG------------------------TGGCGG-------------CAGTCGTCCTGCCCTGCCCGCCT-----ACCCTCTC--------------CGTGTACCT-CTCCC---TGTTGCTTCCC-CGGGA---------------------CGGCGGACCT-GTCCGCCCGGGCGACGCATGCCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACCCTGCCA--------------------------------------------------GCAGGGCGGTTGGGGCGTCTGCGCCCGCGTCGCCTAGGGAAGGT----AC----------CCACCACAC-------------TCCTTCTTGAACA---AGC----TGTC---TGACACG-GG----CC--CAAGGCCCCCAGGTATACAA-----ATACT-TGAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCTCAGGGCATGCCTGTTCGAGCGTCAC-AG--AA--AACCCCTAC--TCACAG-AATGTG-----TGGTGATGGCGTTTGGTG----G----GT----------------------CCCTTCCGGTCCACCGC-GCCCAAATCAAT--GGGCGGACA----ACTGAT--CTCACC--AGCTGACTTGGTAAGATGTATCCTGTTCGACGAAGCGTT-----GAAC------------AGATATCAGTCAGCA-GTGAG----GTTATGT----CCT-----------GCCCCCTCATTTGGACCCCCC-------GAGCAAT-TG----------TCCCCTG----GGTTGACCTCGGATCAGGC{AC}GGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGAAAA????????????????????????????????????????? ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Fig3a_Tuberaceae_ITS) = N: 1-1352; CODONPOSSET CodonPositions (CHARACTERS = Fig3a_Tuberaceae_ITS) = N: 1-1352; END; [ The following blocks are output data for analysis step 10275 ] BEGIN TREES; TITLE Fig3a_Tuberaceae_ITS; LINK TAXA = TaxaForAnalysisStep10275; TREE Fig._3a = [&R] (((((Underwoodia_singeri_mes161_Chile:0.03423078,P5M4_5a_EcM_Nothofagus_obliqua_Argentina:0.06087081):0.02334289,Gymnohydnotrya_australiana_OSC130601:0.01860139):0.02471048,(Underwoodia_beatonii_JT28375_Australia:1.0E-8,Underwoodia_beatonii_JT28380_Australia:1.0E-8):0.01449343):0.00468178,Gymnohydnotrya_echinulata_clar4529:0.00752408):0.0399322,((((((((((((L_C02_EcM_Salix_humboldtiana_Argentina:1.0E-8,R8M8_7x_EcM_Nothofagus_alpina_Argentina:1.0E-8):0.08932388,((L_C04_EcM_Salix_humboldtiana_Argentina:0.03848879,(Tuber_dryophilum_GB35_Italy:0.00790696,Tuber_dryophilum_GB37_Italy:1.0E-8):0.00787275):1.0E-8,(Tuber_sphaerosporum_JT12487_Oregon:1.0E-8,Tuber_sphaerosporum_JT19772_Oregon:1.0E-8):0.01524402):0.00387466,Tuber_californicum_JT28058_California:0.02298642):0.00438148,Tuber_asa_M1828_Italy:0.03860826):0.00377151,(Tuber_cf_borchii_China:0.00524648,Tuber_sp14_K186_Japan:0.02293902):0.00970621):0.00590956,((Tuber_anniae_JT13209_Washington_holotype:1.0E-8,Tuber_anniae_JT22695_Oregon:1.0E-8):0.0122167,(Tuber_borchii_GB14_Italy:0.00399861,Tuber_borchii_GB1_Italy:1.0E-8):0.00740331):0.01553219):0.01862869,(((Tuber_beyeleri_JT32597_Oregon:0.01947094,Tuber_JT9769_Nepal:0.01752899):0.01407481,(Tuber_sancarloensis_ITCV181_Mexico_holotype:1.0E-8,Tuber_sancarloensis_ITCV885_Mexico:0.01142596):0.03293735):0.0168524,((Tuber_shearii_JT12498_North_Carolina:1.0E-8,Tuber_shearii_OSC51052_North_Carolina:1.0E-8):0.01322142,Tuber_sp_JT8755_Florida:0.02310669):0.01544255):0.01354612,((((Tuber_bellisporum_JT11679_Oregon_holotype:1.0E-8,Tuber_bellisporum_JT7270_Oregon_paratype:0.00377661):0.00379334,(Tuber_castellanoi_JT19924_California_paratype:0.00377125,Tuber_castellanoi_JT28069_California_holotype:9.2E-7):0.01908031):0.00374284,(Tuber_gibbosum_JT26632_Washington:0.00378715,Tuber_gibbosum_JT30580_Oregon:1.0E-8):0.00764885):0.01509385,(Tuber_oregonense_JT30493_Oregon_paratype:1.0E-8,Tuber_oregonense_GB284_Oregon_holotype:1.0E-8,Tuber_oregonense_JT27985_Oregon_paratype:1.0E-8):0.01174598):0.08218333):0.02157971,Tuber_multimaculatum_OSC62169_Spain_paratype:0.06738232):0.0081857,(((Tuber_sp_JT28121_Japan:1.0E-8,Tuber_sp8_K228_Japan:1.0E-8):0.07302471,Tuber_sp9_K214_Japan:0.06172668):0.03432181,(((Tuber_brumale_GB21_Italy:0.00642598,Tuber_brumale_GB22_Italy:1.0E-8):0.07104923,(((((Tuber_indicum_A_GB236_China:0.00376792,Tuber_indicum_A_GB240_China:1.0E-8):0.015509,(Tuber_indicum_B_GB237_China:1.0E-8,Tuber_indicum_B_JT29410_Oregon:0.0037702):0.01262252):0.00543172,Tuber_melanosporum_GB200_Italy:0.01751797):0.02982601,Tuber_regimontanum_ITCV909_Mexico_holotype:0.01745004):0.01767802,Tuber_pseudoexcavatum_CJ408_China:0.05969876):0.00628881):0.01381715,Tuber_sp_RH73_Iowa:0.03690114):0.00797201):0.02649628):0.00632016,((((((Tuber_liaotongense_OSC87602_China:0.0154785,(((Tuber_sp_ITCV884_Mexico:1.0E-8,Tuber_sp_ITCV908_Mexico:1.0E-8,Tuber_lyonii_OSC58244_Texas:0.02682581):0.00413806,(Tuber_lyonii_GA21_Georgia:0.00460863,Tuber_spinoreticulatum_U188_Maryland_isotype:0.05126174):0.01439273):0.02998722,Tuber_ferrugineum_MA2721_Italy:0.02624114):0.00477553):0.00846525,(Tuber_sp_JT13224_West_Virginia:0.04266372,(Tuber_sp_JT32567_Mexico:0.0218006,(Tuber_sp_RH8270753_Iowa:0.00377194,Tuber_sp_TB10248_New_York:1.0E-8):0.02239338):0.01791968):0.01218531):0.00374266,Tuber_nitidum_BM105_Spain:0.01660264):0.00637042,Tuber_rufum_GB213_Italy:0.020518):0.00457237,Tuber_malacodermum_JT32319_Spain:0.03212874):0.0146022,Tuber_sp_ITCV910_Mexico:0.02803264):0.02416967):0.0166011,(((Tuber_excavatum_BM100_Spain:0.02990864,Tuber_excavatum_OSC80639_Italy:0.0197516):0.00500136,Tuber_fulgens_M2435_Italy:0.03801687):0.00498508,Tuber_excavatum_China_GQ217540:0.02291643):0.03308937):0.02342664,(((((((Tuber_aestivum_JT30500_Sweden:1.0E-8,Tuber_aestivum_AF516786_Europe:1.0E-8):0.00390125,Tuber_aestivum_China_GQ217542:0.01504121):0.02195555,Tuber_mesentericum_CW105_Sweden:0.0248437):0.03142675,Tuber_panniferum_JT12835_Spain:0.04937583):0.03647034,((Tuber_magnatum_GB12_Italy:1.0E-8,Tuber_magnatum_GB13_Italy:1.0E-8):0.00380257,Tuber_magnatum_JT19460_Italy:0.00374789):0.06833747):0.03258427,(((Tuber_canaliculatum_JT28215_New_Jersey:1.0E-8,Tuber_canaliculatum_OSC59072_West_Virginia:1.0E-8):0.04539968,(Tuber_sp2_K215_Japan:0.01200507,Tuber_macrosporum_JT13362_Italy:0.02248796):0.00488367):0.01225819,Tuber_sp1_K201_Japan:0.01526365):0.03722764):0.01803707,((Tuber_gennadii_BM667_Spain:1.0E-8,Tuber_gennadii_JT9627_Spain_paratype:1.0E-8):0.019256,Tuber_gennadii_M1904_Italy:0.02727816):0.03429992):0.02146647):0.0215568,(((((((Dingleya_JT31575_Australia:1.0E-8,Leppia_holotype_Australia:1.0E-8):0.0020614,Leppia_JT28813_Australia:0.00180782):0.00772836,((Labyrinthomyces_JT27750_Australia:1.0E-8,Reddellomyces_JT4985_Australia:1.0E-8):0.00375153,Reddellomyces_JT27723_Australia:1.0E-8):0.01494397):0.00370364,Nothojafnia_cf_thaxterii_N10_Argentina:0.02691129,(Reddellomyces_JT27724_Australia:0.00379442,Reddellomyces_JT6873_Australia:0.00371667):0.01901622):0.06298531,(Choiromyces_alveolatus_97:1.0E-8,Choiromyces_alveolatus_HS2886:1.0E-8):0.01264947):0.01067087,Choiromyces_meandriformis_DL_Oregon:1.0E-8):0.00772592,Choiromyces_meandriformis_RH691_Iowa:0.01117274):0.00972283):0.00998305):0.0; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr57974] END;