#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 14, 2026; 5:10 GMT TreeBASE (cc) 1994-2008 Study reference: Bonito G.M. 2012. Historical biogeography and diversification of truffles in the Tuberaceae and their newly identified Southern hemisphere sister lineage. PLOSone, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13537] [ The following blocks are input data for analysis step 10277 ] BEGIN TAXA; TITLE TaxaForAnalysisStep10277; DIMENSIONS NTAX=100; TAXLABELS Balsamia_MES84 Balsamia_SRC395 Balsamia_SRC868 Choiromyces_alveolatus_97 Choiromyces_meandriformis_DL_Oregon Choiromyces_meandriformis_RH691_Iowa Dingleya_JT31575_Australia Gymnohydnotrya_australiana_JT19760 Gymnohydnotrya_australiana_OSC130601 Gymnohydnotrya_echinulata_clar4529 Helvella_lacunosa_MES218 Helvella_lacunosa_MES286 Helvella_macropus_MES198 L_C02_EcM_Salix_humboldtiana_Argentina L_C04_EcM_Salix_humboldtiana_Argentina Labyrinthomyces_JT27750_Australia Leppia_JT28813_Australia Leppia_holotype_Australia Nothojafnia_cf_thaxterii_N10_Argentina P5M4_5a_EcM_Nothofagus_obliqua_Argentina R8M8_7x_EcM_Nothofagus_alpina_Argentina Reddellomyces_JT27723_Australia Reddellomyces_JT27724_Australia Reddellomyces_JT6873_Australia Tuber_JT9769_Nepal Tuber_aestivum_GB202_Italy Tuber_aestivum_JT30500_Sweden Tuber_aestivum_OSC61974_Serbia Tuber_anniae_JT13209_Washington_holotype Tuber_anniae_JT22695_Oregon Tuber_asa_M1828_Italy Tuber_bellisporum_JT11679_Oregon_holotype Tuber_bellisporum_JT7270_Oregon_paratype Tuber_beyeleri_JT32597_Oregon Tuber_borchii_GB1_Italy Tuber_borchii_GB14_Italy Tuber_brumale_GB21_Italy Tuber_brumale_GB22_Italy Tuber_californicum_JT28058_California Tuber_canaliculatum_JT28215_New_Jersey Tuber_canaliculatum_OSC59072_West_Virginia Tuber_castellanoi_JT19924_California_paratype Tuber_castellanoi_JT28069_California_holotype Tuber_cf_borchii_China Tuber_dryophilum_GB35_Italy Tuber_dryophilum_GB37_Italy Tuber_excavatum_BM100_Spain Tuber_excavatum_OSC80639_Italy Tuber_ferrugineum_MA2721_Italy Tuber_fulgens_M2435_Italy Tuber_gennadii_BM667_Spain Tuber_gennadii_JT9627_Spain_paratype Tuber_gennadii_M1904_Italy Tuber_gibbosum_JT26632_Washington Tuber_gibbosum_JT30580_Oregon Tuber_indicum_A_GB236_China Tuber_indicum_A_GB240_China Tuber_indicum_B_GB237_China Tuber_indicum_B_GB339_China Tuber_indicum_B_JT29410_Oregon Tuber_liaotongense_OSC87602_China Tuber_lyonii_GA21_Georgia Tuber_lyonii_OSC58244_Texas Tuber_macrosporum_JT13362_Italy Tuber_magnatum_GB12_Italy Tuber_magnatum_GB13_Italy Tuber_malacodermum_JT32319_Spain Tuber_melanosporum_GB200_Italy Tuber_mesentericum_CW105_Sweden Tuber_multimaculatum_OSC62169_Spain_paratype Tuber_nitidum_BM105_Spain Tuber_oregonense_GB284_Oregon_holotype Tuber_oregonense_JT30493_Oregon_paratype Tuber_panniferum_JT12835_Spain Tuber_panniferum_JT4969_France Tuber_pseudoexcavatum_CJ408_China Tuber_regimontanum_ITCV909_Mexico_holotype Tuber_rufum_GB213_Italy Tuber_sancarloensis_ITCV181_Mexico_holotype Tuber_sancarloensis_ITCV885_Mexico Tuber_shearii_JT12498_North_Carolina Tuber_sp_ITCV908_Mexico Tuber_sp_ITCV910_Mexico Tuber_sp_JT13224_West_Virginia Tuber_sp_JT28121_Japan Tuber_sp_JT8755_Florida Tuber_sp_RH73_Iowa Tuber_sp_TB10248_New_York Tuber_sp1_K201_Japan Tuber_sp14_K186_Japan Tuber_sp2_K215_Japan Tuber_sp8_K228_Japan Tuber_sp9_K214_Japan Tuber_sphaerosporum_JT19772_Oregon Tuber_spinoreticulatum_U188_Maryland_isotype Underwoodia_beatonii_JT28375_Australia Underwoodia_beatonii_JT28380_Australia Underwoodia_columnaris_U42685 Underwoodia_singeri_JT26159 Underwoodia_singeri_mes161_Chile ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14818] TITLE Fig3b_Tuberaceae_LSU; LINK TAXA = TaxaForAnalysisStep10277; DIMENSIONS NCHAR=972; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Balsamia_MES84 AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-TGCTCAAATTT-TAAATCTGG-CG-TTTACGACGTCCCGAGTTGTAATTTGGAGAGGCATCTTCGGGG-ACGGTGTCAGACTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCCTGC-CTGGCTGTCTGATCCCT-TGTGAA-GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCCAAGTGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCCCTAGCAAACAGCCTTCCCTACTCCAGGGGGG-----------------TGCAATTGCACTGGGGCTGGGCCAGCGTCGGTTGGGGTGGTGGGACAAAGGCGTGGGGAATGTGGCTCCTCTCGAGG-AGTGTT-ATAGCCCAGCG----TGCAATGCCACCTATCCTGACTGAGGGCCGCGC-CTCGGCGAGGATGCTGG-CACAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGCCAAACCCTTGCGCGAAATGAAAGTGAATGCAGGTGGGACAA---CCCCCCTCGGGGGGCATTGCACCATCGA-CCGATCCTGATGTACTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTG?????????????????????????????????????????????????????????????????????????????????????? Balsamia_SRC395 AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAG-TGCTCAAATTT-TAAATCTGG-CG-TCTACGACGTCCCGAGTTGTAATTTGGAGAGGCATCTTCGGGG-ACAGCGTCAGACTATGTTTCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGTCTGC-CTGGCTGTCTGATCCCT-TGTGAA-GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCCAAGTGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCCCTAGCAAACAGCCTTCCCTACTCCAGGGAGG-----------------TGCACTTGCATTGGGGCTGGGCCAGCGTCGGTTAGTGTGGTGGGACAAAGGCGTAGGGAATGTGGCTCCTCTCGAGG-AGTGTT-ATAGTCCTGCG----TGCAATGCCGCCTATCCTGACTGAGGACCGCGC-CTTGGCGAGGATGCTGG-CACAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGCCAAACCCTTGCGCGAAATGAAAGTGAATGCAGGTGGGACAA---CCCCCCTCGGGGGGCATTGCACCATCGA-CCGATCCTGATGTACTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGC????????????????????????????????????????????????????????????????????????????????????? Balsamia_SRC868 AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-TGCTCAAATTT-TAAATCTGG-CG-TTTACGACGTCCCGAGTTGTAATTTGGAGAGGCATCTTCGGGG-ACGGTGTCAGACTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCCTGC-CTGGCTGTCTGATCCCT-TGTGAA-GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCCAAGTGGGTGGTAAATTTCATCTAAAGCTAAATACGGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCCCTAGCAAACAGCCTTCCCTACTCCAGGGGGG-----------------TGCAATTGCACTGGGGCTGGGCCAGCGTCGGTTGGGGTGGTGGGACAAAGGCGTGGGGAATGTGGCTCCTCTCGAGG-AGTGTT-ATAGCCCAGCG----TGCAATGCCACCTATCCTGACTGAGGGCCGCGC-CTCGGCGAGGATGCTGG-CACAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGCCAAACCCTTGCGCGAAATGAAAGTGAATGCAGGTGGGACAA---CCCCCCTCGGGGGGCATTGCACCATCGA-CCGATCCTGATGTACTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCA???????????????????????????????????????????????????????????????????????????????????? Choiromyces_alveolatus_97 ??????????????????CAACAG?GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGG-CGTCCCCGA-CG-TCCGAGTTGTAATTTGGAGAGGCATCTTCTGGA-GGGGCCC?AGCCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCTCGG?CTGGATGTC?CCCACCTGCATGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGGCCCTGGACAAACAAC???GTAGGTTGTGGTGGG------------------TGCACTTGCCCAGGG-TCGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGCCGCGGGAATGTGGCTCCTCTCGGGG-AGTGTT?ATAGCCCTGGG----CGCCATGCCGTCAGTCCCGACTGAGGACCGCGC-TTCGGCAAGGATGCTGG?CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTGACG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Choiromyces_meandriformis_DL_Oregon AAGCGGAGGAGAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAGA-AGCTCAAATTT-GAAATCTGA-CGTCCCCGA-CG-TCCGAGTTGTAATTTGGAGAGGCATCTTCTGGA-GGGGCCC?AGCCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCTTGG?CTGGATGTC?CCCACCTGTATGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCGGGCAAGCAAC---CCTCCTTCTGGTGGGTGTCCTCCTTCGGGTGGGTGCACTTGCCCTTGG-CTGGGCCAGCATCAGTTGGGAGGGCGGGATAAAGGCCCAGGGAATGTGGCTCCTCTCGGGG-AGTGTT?ATAGCCCTGGG----TGCCATGCCGCCGCTCCCGACTGAGGACCGCGC-TTCGGCAAGGATGCTGG?CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTTCAAACCCTTACGCGTAATGAAAGTGAACGGAGGTGGGAACCC??????????CGAGAGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCGAAAGTACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAGTCCCC??????? Choiromyces_meandriformis_RH691_Iowa ????????????????????????????????CCTCAGTAACGGCGAGTGAAGCGGCAGA-AGCTCAAATTT-GAAATCTGA-CGTCCCCGA-CG-TCCGAGTTGTAATTTGGAGAGGCATCTTCTGGA-GGGGCCC-AGCCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCTTGG-CTGGATGTC-CCCACCTGTATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGGGACCAGACTCAGCCTCGGGCAAACAAC---CCTCCTTCTGGTGGG------------------TGCACTTGCCCTTGG-CTGGGCCAGCATCAGTTGGGAGGGCGGGATAAAGGCCCAGGGAATGTGGCTCCTCTCGGGG-AGTGTT-ATAGCCCTGGG----TGCCATGCCGCCGCTCCCGACTGAGGACCGCGC-TTCGGCAAGGATGCTGG-CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTTCAAACCCTTACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------CGAGAGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTA?CTGGTTCCTGCCGAAGTTTCCCTC?? Dingleya_JT31575_Australia ????????GAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGG-CGCCCC-GGGTG-TCCGAGTTGTAATTTGGAGAGGCATCTTCTGGT-GGGGCCG?GGCCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTTGTGG?CTTGGTGCC?CCCACCTGTATGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGGCCTAGGGCAAACATC?--CTTCCTTCTGGTTGG------------------TGCACTTGCCCCTGG-CTGGGCCAGCATCAGTTGGGTCGGCGGGACAAAGGTCCGGGGAATGTGGCTCCC-TCGGGG-AGTGTT?ATAGCCCCGGA----TACCATGCCGCCCGGCCCGACTGAGGACCGCGC-CC?GGCTAGGATGCTGG?CGTAATGGTCTTCA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Gymnohydnotrya_australiana_JT19760 ??????????????????CAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGG-CGCCCTCGGGTG-TCCGAGTTGTAATTTGGAGAGGCATCTTCTGGATTGGGACCCAGCCTATCTTCCTTGGAACAGGAGGTCACAGAGGGTGAGAATCCCGTTCTTGG-CTGGAGGAT-CCCTCCTGCATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTT{CG}AAAGGGAAGCGCTGGAGACCAGACTCGGCCTTGGACAAACAGCC---CCCCTTCTGGTGGG------------------TGCACTTGTACTCGG-TCGGGCCAGCATCAGTTGGCGTGGCGGGACAAAGGCCCGGCGAATGTGGCTCCCCTCGGGG-AGTGTT-ATAGCGCCGGG----CGCAATGCCGCCCACGCCGACTGAGGACCGCGC-TCCGGCCAGGATGCTGG-CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTGTGCAAGTGTTTGGGCTTCAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------CGCGAGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATA???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Gymnohydnotrya_australiana_OSC130601 ?????????????GAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGG-CGCCCTCGGGTG-TCCGAGTTGTAATTTGGAGAGGCATCTTCTGGATTGGGACCCAGCCTATCTTCCTTGGAACAGGAGGTCACAGAGGGTGAGAATCCCGTTCTTGG-CTGGAGGAT-CCCTCCTGCATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTGGGGACCAGACTCGGCCTTGGACAAACAGCC---CCCCTTCTGGTGGG------------------TGCACTTGTACTCGG-TCGGGCCAGCATCAGTTGGCGTGGCGGGACAAAGGCCCGGCGAATGTGGCTCCCCTCGGGG-AGTGTT-ATAGCGCCGGG----CGCAATGCCGCCCACGCCGACTGAGGACCGCGC-TCCGGCCAGGATGCTGG-CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTGTGCAAGTGTTTGGGCTTCAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------CGCGAGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGT-ATA??????????????????????????????????????????????????????????? Gymnohydnotrya_echinulata_clar4529 AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACCTTTGG-TG-TCCGAGTTGTAATTTGGAGAGGCATCTTCGGGA--GGGACCCAGCCTATCTTCCTTGGAACAGGAGGTCATAGAGGGTGAGAATCCCGTTCTCGG-CTGGATGTT-CCCACCCGCGTGTAAGTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTGGAGACCAGACTCGGCCTTGGACAAACAGCC---CCCCTTCTGGCGGT------------------CGCACTTGTCCTTGG-CTGGGCCAGCATCAGTTGGGGTGGCGGGACAAAGGCCCGGTGAATGTGGCTCCCCCCGGGG-AGTGTT-ATAGCACCGGA----CGCAATGCCGCCCACCCCGACTGAGGACCGCGC-TTCGGCTAGGATGCTGG-CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTTCAAACCCTCACGCGGAATGAAAGTGAACGGAGGTGGGAACCC---------CTCCTGGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACG???????????????????????????????????????????????????????????????????????????????????????? Helvella_lacunosa_MES218 AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCCCAGTAACGGCGAGTGAAGCGGCAGC-AGCTCAAATTT-GAAATCTGG-GG-CCCTTGGCC-CCCGAGTTGTAATTTGGAGAGGCATCTTCTGGGGGGAGCGCCGGCCCATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCGAGG-CAGGTGGCCTCCTCCCA-TGTGGA-GGGCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCCAAGTGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGGGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGGGCCCGGGCAAACACCG---CGTCCTTCGGGGCCG-----------------TGCAATTGCCTGGGC-CTGGGCCAGCATCAGTTGGTGTGGCGGGACAAAGGGGCGGGCAATGTGGCTCCCCACGGGG-AGTGTTATTAGGCCCGCC----CTGAATGCCGCCGACGTCGACTGAGGACCGCGC-TTCGGCTAGGATGCTGG-CTCAATGGCCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGTCAAACCCTTGCGCGTAATGAAAGTGAGCGGAGGTGGGAACC----------CCTTGCGGGGCGCACCATCGA-CCGATCCGGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGA?????????????????????????????????????????????????????????????????????????????????????????? Helvella_lacunosa_MES286 AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCCCAGTAACGGCGAGTGAAGCGGCATC-AGCTCAAATTT-GAAATCTGG-GG-CCCTCGGCC-TCCGAGTTGTAATTTGGAGAGGCATCTTCTGGGGGGAGCGCCGGCCCATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCTAGG-CTGGCGGCCTCCTCCCG-TGTGGA-GGGCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCCAAGTGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGGGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGGCCCGGGCAAACACCG--CGCTCCTTCGGGGCCG-----------------TGCAATTGTCCGGGC-CTGGGCCAGCATCGGTTGGTGTGGCGGGACAAAGGGGCGGGCAATGTGGCTCCCCACGGGG-AGTGTTATTAGGCCCGCG----CTCAATGCCGCCGACGTCGACTGAGGACCGCGC-CTCGGCTAGGATGCTGG-CTCAATGGCCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGTCAAACCCTTGCGCGTAATGAAAGTGAGCGGAGGTGGGAACC----------CCTCGCGGGGTGCACCATCGA-CCGATCCTGATGTCCTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGC????????????????????????????????????????????????????????????????????????????????????? Helvella_macropus_MES198 AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCCCAGTAACGGCGAGTGAAGCGGCAGG-AGCTCAAATTT-GAAATCTGG-GG-TCCCCGACC-TCCGAGTTGTAATTTGGAGAGGCATCTTCGGGGGGGAGCGCCGGCCCATGTTCCTTGGAACAGGACGTCGCAGAGGGTGAGAATCCCGTGCCAGG-CCGGCTGCCTCCTCCCG-GGTGAA-GGGCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCCAAGTGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCGGGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGGCCCGGGCAAACATCG---AGCCCCCCGGGGCCG-----------------TGCAATTGCCTGGGG-CTGGGCCAGCATCAGTTGGCGTGGCGGGACAAAGGCGCGGGGAATGTGGCTCCCCTCGGGG-AGTGTTATCAGGCCCGCG----CTCAATGCCGCCGACGCCGACTGAGGACCGCGC-CTCGGCTAGGATGCTGG-CTTAATGGCCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGCCAAACCCTTGCGCGGAATGAAAGTGAGCGGAGGTGGGAACC---------CCCCAGCGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGAC????????????????????????????????????????????????????????????????????????????????????????? L_C02_EcM_Salix_humboldtiana_Argentina AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-AAAATCTGG-CA-CTCTCAGTG-TCCGAGTTGTACTTTGGAGAGGCATCTTCTGGA--GGGACCCAGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTCCTTGG-CTGGATGTTCCCT-CCTGTATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGAGTCAACCTTTG-CAAACAATTG--TCC-TTCTGGGCTG------------------TGCACTTGTCATTGG-CTGGGCCAGCATCGGTTGGGACGGCAGGATAAAGGCCTTGGGAATGTGACTCCCTT-GTGG-AGTGTT-ATAGCCCTTGG----TGCCATGCTGTCAGCCCCGACCGTGGACCGCGC-TTAGGCTCGGATGCTGG-CTTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGCTTCAAACCCTTACGCGTAATGAAAGTAAACGGAGGTGGGAATCC----------TGCAAGGGATGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTG??????????????????? L_C04_EcM_Salix_humboldtiana_Argentina AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-TG-CCCCTGGTG-CCCGAGTTGTACTTTGGAGAGGCATCTTCTGGA--GGGACCCAGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTCCTTGG-CTGGATGTTCCCT-CCTGTATGTA-GTGTCTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGAGTCAGCCTTTG-CAAACAACTG--TCC-TTCTGGGTGG------------------TGCACTTGTCATTGG-TTGGGCCAGCATCGGTTGGGACGGCAGGATAAAGGCCCAGGGAATGTGACTCCTTTATGG--AGTGTT-ATAGCCCCAGG----TGGCATGCTGTCAGCCCCGACCGTGGACCGCGC-CTCGGCTCGGATGCTGG-CTTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGC{AG}AGTGTTTGGGCTCCAAACCCTCACGCGTAATGAAAGTAAACGGAGGTGGGAACCC----------CGCAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTG??????????????????? Labyrinthomyces_JT27750_Australia AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGG-CGTCGCAGGGCG-TCCGAGTTGTAATTTGGAGAGGCATCTTCGGGC-GGGGCCC?AGCCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCACGG?CTGGGCGCC?CCCGCCTGTATGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTAGGGCAAACATC?--CTTCCTTCTGGTTGG------------------TGCACTTGCCCCTGG-CTGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGTCCGGGGAATGTGGCTCCCCTCGGGG-AGTGTT?ATAGCCCCGGA----CACCATGCCGCCCGTCCCGACTGAGGACCGCGC-TTCGGCTAGGATGCTGG?CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTTCAAACCCTTACGCGTAATGAAAGTGAACGGAGGTGGGAACCC??????????CGCGAGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATGGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG?TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTAGCTGGTCCTGCGA?????????????? Leppia_JT28813_Australia ????????????????????ACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGG-CGCCCCCGGGTG-TCCGAGTTGTAATTTGGAGAGGCATCTTCTGGT-GGGGCC-GGGCCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTTTGTGG-CTCGGTGCC-CCCACCTGTATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTAGGGCAAACATCC---TTCCTTCTGGTTGG------------------TGCACTTGCCCCTGG-CTGGGCCAGCATCAGTTGGGCCGGCGGGACAAAGGTCCGGGGAATGTGGCTCCCCTCGGGG-AGTGTT-ATAGCCCCGGA----TACCATGCCGCCCGGCCCGACTGAGGACCGCGC-TCCGGCTAGGATGCTGG-CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTTCAAACCCTTACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------CGCGAGGGGCGCACCATCGA-CCGATCCTGATGTCCTCGGATGGATTT-GAGTAGGAGCATGGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTAT????????????????????????????????????????????????????????????? Leppia_holotype_Australia ????????????????????ACAG--TATAG-CCTCACTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGG-CGCCCCTGGGTG-TCCGAGTTGTAATTTGGAGAGGCATCTTCTGGT-GGGGCC--GGCCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTTGTGG-CTTGGTG-CCCCCACCTGTATGTA-GTGTCTTCTACGA-TCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGGCCTAGGGCAAACATCC---TTCCTTCTGGTTGG------------------TGCACTTGCCCCTGG-CTGGGCCAGCATCAGTTGGGTCGGCGGGACAAAGGTCCGGGGAATGTGGCTCCCCTCGGGG-AGTGTT-ATAGCCCCGGA----TACCATGCCGCCCGGCCCGACTGAGGACCGCGC-TCCGGCTAGGATGCTGG-CGTAATGGTCTTCA-CGACCC-TCTTGAAACACGGACCAAGGAGTCTAACACCTATGCGAGTGTTTGGGCTTCAAACCCTTACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------CGCGAGGGGCGCACCATCGA-CCGATCCTGATGTCCTCGGATGGATTT-GAGTAGGAGCATGGCTGTTGGG-ACCC-AAAGATGGTGAACTATGCCTG-AATAGGGTGA--CCAGAGGAAACTCTGGTGGAAGCTCGCA-CGGTTCTGACGTGCAAATCGATCGTCAA-TTT-GGGTATAGGGGCG-AAAGACTAATCAA--CCATCTAGTAACTGTTCTGGCCGAA???????????? Nothojafnia_cf_thaxterii_N10_Argentina ?????????????????????????????????????GTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGG-CGTCGCGAGGCG-TCCGAGTTGTAATTTGGAGAGGCATCTTCCGGC--GGGGTCCAGCCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCATGG-CTGGGTCGCCCCA-CCTGTATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGTCCAGGGCAAACATCCT--CCC-TTCTGGTTGG------------------TGCACTTGCCCCGGG-CTGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGTCCTGGGAATGTGGCTCCCCTCGGGG-AGTGTT-ATAGCCCCGGA----TACCATGCCGCCCGTCCCGACTGAGGACCGCGC-TTCGGCTAGGATGCTGG-CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTTGAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------CGCGAGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? P5M4_5a_EcM_Nothofagus_obliqua_Argentina AAGCGGAGG???????????????-?????G-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CG-CCTGCGGTG-TCCGAGTTGTAATTTGGAGAGGCGTCTTCTGGT--GGGACCCAGCCTATCTTCCTTGGAACAGGAGGTCACAGAGGGTGAGAATCCCGTTCTCGG-CTGGATGCTCCCA-CCTGTATGTA-GTGCCTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTGGAGACCAGACTCGGCCAAGGACAAACAGCCC--TCC-TTCTGGTGGG------------------TGCACTTGCCCTCGG-CTGGGCCAGCATCAGTTGGGGTGACGGGACAAAGGCCTGTGGAATGTGGCTCCCCTCGGGG-AGTGTT-ATAGCCATGGG----TGCAATGCCGCCTACCCCGACTGAGGACCGCGC-TTCTGCTAGGATGCTGG-CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTTCAGACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCT----------CGCGAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTG??????????????????? R8M8_7x_EcM_Nothofagus_alpina_Argentina AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-AAAATCTGG-CA-CTCTCAGTG-TCCGAGTTGTACTTTGGAGAGGCATCTTCTGGA--GGGACCCAGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTCCTTGG-CTGGATGTTCCCT-CCTGTATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGAGTCAACCTTTG-CAAACAATTG--TCC-TTCTGGGCTG------------------TGCACTTGTCATTGG-CTGGGCCAGCATCGGTTGGGACGGCAGGATAAAGGCCTTGGGAATGTGACTCCCTT-GTGG-AGTGTT-ATAGCCCTTGG----TGCCATGCTGTCAGCCCCGACCGTGGACCGCGC-TTAGGCTCGGATGCTGG-CTTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGCTTCAAACCCTTACGCGTAATGAAAGTAAACGGAGGTGGGAATCC----------TGCAAGGGATGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTG??????????????????? Reddellomyces_JT27723_Australia AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGG-CGTCGCAGGGCG-TCCGAGTTGTAATTTGGAGAGGCATCTTCCGGC-GGGGCCC?AGCCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCACGG?CTGGGTGCC?CCCGCCTGTATGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGGCCGAGGGCAAACATC?--CTTCCTTCTGGTTGG------------------TGCACTTGCCCCTGG-CCGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGTCCGGGGAATGTGGCTCCCCTCGGGG-AGTGTT?ATAGCCTCGGA----TACCATGCCGCCCGTCCCGACTGAGGACCGCGC-TTCGGCTAGGATGCTGG?CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTTCAAACCCTTACGCGTAATGAAAGTGAACGGAGGTGGGAACCC??????????CGCGAGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT?GAGTAGGAGCATGGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG?TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTAGCTGGTTCCTGCCGAGTCCCCCCCC?? Reddellomyces_JT27724_Australia AAGCGGAGGACAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGG-CGCCGCGAGGCG-TCCGAGTTGTAATTTGGAGAGGCATCTTCCGGT-GTGGCCCCAGCCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCGTGG?CTGGGTGCC?CCCACCCGTATGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTAGGGCAAACATC?--CTTCCTTCTGGTTGG------------------TGCACTTGCCCATGG-CTGGGCCAGCATCAGTTGGGACGACGGGACAAATGTCTGGGGAATGTGGCTCCCCTCGGGG-AGTGTT?ATAGCCCCGGA----CACCATGCCGTCCGTCCCGACTGAGGACCGCGC-TCCGGCTAGGATGCTGG?CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCCATGCGAGTGTTTGGGCTTCAAACCCTTACGCGCAATGAGAGTGAACGGAGGTGGGAACCC??????????CGCGAGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATGGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTAGCTGGTTCCTGCC?????????????? Reddellomyces_JT6873_Australia ??????????????????CAACAG?GGATTG?CCTCAGTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGG-CGCCGCGAGGTG-TCCGAGTTGTAATTTGGAGAGGCATCTTCCGGT-GGGGTCCCAGCCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCACGG-TTGGGTGCC-CCCGCCTGCATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTAGGGCAAACATC---CTTCCTTCTGGTTGG------------------TGCACTTGCCCATGG-CTGGGCCAGCATCGGTTGGGACGACGGGATAAATGCCCGGGGAATGTGGCTCCCCTTGGGG-AGTGTT-ATAGCCCCGGA----TACCATGCCGTCCGTCCCGACTGAGGACCGCGC-TCCGGCTAGGATGCTGG-CATAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCCATGCGAGTGTTTGGGCTCCAAACCCTTACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------CGCGAGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATGGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTAGCTG??????????????????????? Tuber_JT9769_Nepal ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????AGAGGCATCTTCTGGA-GGGGCCC-AGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTACTTGG-CTGGATGTT-CCCTCCAGTATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAGGGGAAGCGCTTAGGACCAGACCTGGCCTTTGGTGAACAAT---CGCCCACCGGGGCGG------------------TGTACTTTGTCTTGG-TCGGGCCAGCATGGGTTGGGACGGTGGGATAAAGGCTCGGGAAATGTGACTCCTTTATGG--AGTGTT-ATAGTCCCGGG----TGGCATGCCATCAGTCCCGACTGTGGAACGCGC-ACCGGCACGGATGCTGG-CATAATGGTCTTCA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_aestivum_GB202_Italy AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGG-CGCCCCGCAGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTCAGGAGGGGGCCC-GGCCTATGTTCCTTGGAGCAGGGCGTCGCAGAGGGTGAGAATCCCGTTCTTGG-CCGGACAGC-CCCTCCGGTGTGCA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGGCCATGGTCTAACAG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_aestivum_JT30500_Sweden ?????????????????????????????????????????????????????????????AG-------------------------------------------------------------------GGGGCCC?GGCCTATGTTCCTTGGAACAGGGCGTCGCAGAGGGTGAGAATCCCGTTCTTGG?CCGGACAGC?CCCTCCGGTGTGCA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGGCCATGGACTAACAGC?-TGTCCCTTCTGGGCGG------------------TGCACTTGTCCTTGG-CCGGGCCAGCATCGGTTGGGACGGCGGGACAAAGGCTGGGGGAATGTGACTCCCTT-GAGG-AGTGTT?ATAGCCCCCGG----CGCCATGCCGCCCGCCCCGACCGAGGACCGCGC-TTCGGCTAGGATGCTGG?CGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTT??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_aestivum_OSC61974_Serbia ?????????????????????????GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGG-CGCCCCGCAGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTCAGGAGGGGGCCC-GGCCTATGTTCCTTGGAACAGGGCGTCGCAGAGGGTGAGAATCCCGTTCTTGG?CCGGACAGC?CCCTCCGGTGTGCA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGGCCATGGACTAACAGC?-TGTCCCTTCTGGGCGG------------------TGCACTTGTCCTTGG-CCGGGCCAGCATCGGTTGGGACGGCGGGACAAAGGCTGGGGGAATGTGACTCCCTT-GAGG-AGTGTT?ATAGCCCCCGG----CGCCATGCCGCCCGCCCCGACCGAGGACCGCGC-TTCGGCTAGGATGCTGG?CGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTTCAAACCCTAGCGCGTAATGAAAGTGAACGGAGGTGGGAACCC-?????????CGCAAGGGGCGCACCATCGA-CCGATCCTGATGTCCTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTAGCTGGTTCC?????????????????? Tuber_anniae_JT13209_Washington_holotype AGCGGAGGGAAAAGAAACCAACAG-GGATTG-CCTTAGTAACGGAGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTAA-CACCTCTGGTGT-TTCGAGTTGTACTTTGGAGAGACATCTTCTGGA-GGGGCCC-AGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTCCTTGG-CTGGATGTT-CCCTCCTGTATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGTCGGCCTTTGGCAAACAAC--TGTCCCTTCTGGGTGG------------------TGCACTTGTCATTGG-CTGGGCCAGCATCGGTTGGGACGGCAGGATAAAGGCCTGGGGAATGTGACTCCTCTATGG--AGTGTT-ATAGCCCCAGG----CGGCATGCTGTCAGCCCCGACCGTGGACCGCGC-CTTGGCTCGGATGCTGG-CTTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTCTAAACCCTCACGCGTAATGAAAGTAAACGGAGGTGGGAACCC----------TGAGAGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCGAAAAGACTAATCGA-ACCATCTA?????????????????????????????? Tuber_anniae_JT22695_Oregon ?????????????????????????GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTAA-CACCTCTGGTG--TTCGAGTTGTACTTTGGAGAGGCATCTTCTGGA-GGGGCCC-AGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTCCTTGG-CTGGATGTT-CCCTCCTGTATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGTCGGCCTTTGGCAAACAAC--TGTCCCTTCTGGGTGG------------------TGCACTTGTCATTGG-CTGGGCCAGCATCGGTTGGGACGGCAGGATAAAGGCCTGGGGAATGTGACTCCTCTATGG--AGTGTT-ATAGCCCCAGG----CGGCATGCTGTCAGCCCCGACCGTGGACCGCGC-CTTGGCTCGGATGCTGG-CTTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTCCAAACCCTCACGCGTAATGAAAGTAAACGGAGGTGGGAACCC----------TGAGAGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGC?AAA-GACTAATCGA-ACCATCTAGTA?CTGGTTCCTGCC?????????????? Tuber_asa_M1828_Italy AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGA-CATCTTTGGTG--TTCGAGTTGTACTTTGGAGAGGCATCTTCTGGAGGGGGCCC-GCCTTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTTTTGTGTTGGACGTT-CCCTCCTGTAAGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACTAGACTCAGCCTTTGGCAAACAAC---TGTCCTTCTGGGTGG------------------TGCACTTGTTATTGG-TTGGGCCAGCATCGGTTGGGACGGCAGGATAAAGGCTCAGGGAATGTGACTCCACTATGG--AGTGTT-ATAGCCCCAGG----TGACATGCTGTCAGCCCCGACTGTGGACCGCGCCTTTGGCTCGGATGCTGG-CTTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTTCAAACCCTTACGCGTAATGAAAGTAAACGGAGGTGGGAACCC----------TGTGAGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTAGCTGGTTCCTGCCGAAGTT???????? Tuber_bellisporum_JT11679_Oregon_holotype ????????GAAAAGAAACCAACAG-GGATTG?CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CGCCCACAAGCG-TCTGAGTTGTACTTTGGAGAGGCATCTTCGCGA?GGGGTCC?AGCCTATGTTCCTTGGAACAGGGCGTCACAGAGGGTGAGAATCCCGTTCGTGG-CTGGATACT-CCTTGTAGTATGTA?GTGTCTTCAATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGTCAGCCTTTGACAAACAAC---ATTCCTTGTGGATAG?-----------------TGCACTTGTTATTGG-CTGGGCCAGCATCAGTTGGGACGGTAGGATAAAGGCCTTGGGAATGTGACTCC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_bellisporum_JT7270_Oregon_paratype ????????GAAAAGAAACCAACAG-GGATTG?CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CGCCC{AG}CAAGCG-TCTGAGTTGTACTTTGGAGAGGCATCTTCG{CG}GA?GGGGTCC?AGCCTATGTTCCTTGGAACAGGGCGTCACAGAGGGTGAGAATCCCGTTCGTGG-CTGGATACT-CCTTGTATTATGTA?GTGTCTTCAATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGTCAGCCTTTGACAAACAAC---ATTCCTTTTGGATAG------------------TGCACTTGTTATTGG-CTGGGCCAGCATCAGTTGGGACGGTAGGATAAAGGCCTTGGGAATGTGACTCCCTTCCGG--AGTGTT-ATAGCCCCTGG----CGCCATACTGCCTGCCCTGACTGTGGACCGCGC?TTCGGCTTGGATGCTGG-CTTAATGGTCTTCAGCG{AG}CCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGCTTCAAACCCTTACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------TGAAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT?GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG?TATAGGGGCG-AAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCC??????????????? Tuber_beyeleri_JT32597_Oregon ???????????????????????G-GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACCTCCGGTG--TTCGAGTTGTAATTTGGAGAGGCATCTTCTGGA-GGGGCCC?AGCCTATGTGCCTTGGAACAGGACATCATAGAGGGTGAGAATCCCGTACTTGG-CTGGATGTT?CCCTCCTGTATGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTAGGACCAGACTCAGCCTTTGGTGGACATC?--CGCCCATCGGGGCGG------------------TGCACTTGTCATTGG-TTGGGCCAGCATGGGTTGGGACGGTGGGATAAAGGCTCGGGAAATGTGACTCCTTTATGG??AGTGTT?ATAGTCCCGGG----TGGCATGCCACCAGTCCCGACTGTGGAACGCGC-ATCGGCACGGATGCTGGGCATAATGGTTTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGCATCAAACCCTCACGCGTAATGAAAGTGAACGTAGGTGGGAACCCTTGAAGCACGCGGATAGGGCGCTCCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTAGCTGG?TCCT??CGAA?TTCCCCTC?? Tuber_borchii_GB1_Italy ??????????????????????AG-GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CGCCTCTGGTG--TCCGAGTTGTACTTTGGAGAGGCATCTTCTGGA-GGGGCCC?AGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTCCTTGG-CTGGATATT?CCCTCCTGTATGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGAGTTAGCCTTTGGCAAACAAC?--TATCCTTCTGGATGG------------------TGCACTTGTCATTGG-TTGGGCCAGCATCGGTTGGGACGGCAGGATAAAGGCCCAGGGAATGTGACTCCTTTATGG--AGTGTT?ATAGCCCCAGG----CGGCATGCTGTCAGCCCCGACCGTGGACCGCGC-TTCGGCTCGGATGCTGG?CTTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGCTCTAAACCCTCACGCGTAATGAAAGTAAACGGAGGTGGGAACCC??????????TGAAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGG?-TATAGGGGCG-AAAGACTAATCGA??????????????????????????????????????? Tuber_borchii_GB14_Italy ??????????????????????AG-GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CGCCTCTGGTG--TCCGAGTTGTACTTTGGAGAGGCATCTTCTGGA-GGGGCCC?AGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTCCTTGG-CTGGATATT?CCCTCCTGTATGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGAGTTAGCCTTTGGCAAACAAC?--TATCCTTCTGGATGG------------------TGCACTTGTCATTGG-TTGGGCCAGCATCGGTTGGGACGGCAGGATAAAGGCCCAGGGAATGTGACTCCTTTATGG--AGTGTT?ATAGCCCCAGG----CGGCATGCTGTCAGCCCCGACCGTGGACCGCGC-TTCGGCTCGGATGCTGG?CTTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGCTCTAAACCCTCACGCGTAATGAAAGTAAACGGAGGTGGGAACCC??????????TGAAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG?TATAGGGGCG-AAAGACTAATCGA-CC???????????????????????????????????? Tuber_brumale_GB21_Italy ??????????????????????AG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACTATTCGTG--TCTGAGTTGTAATTTGGAGAGGCAACTTCAGGT-GGGACCC?AGTCTATATTCCTTGGAACAGGATGTCATAGAGGGTGAGAATCCCGTTCATGG-CTGGATGTT?CCCGTTAGTATGTA?GTGCCTTCTACGAGTCGAGTTGTTTGAGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACATAGCCTATGGCAAACAAC?--TGTCCTTCTGGGTAG------------------TGCACTTGTCAAAGG-TTAGGCCAGCATCAGTTAGGATGGTGGGAGAAAGACTAGGAGAATGTGACTCCAATTTGG--AGTGTT?ATAGATCCTGG----TGTCATGCCATCTGTCCTGACTGTGGACCGCGC-TTCGGCTAGGATGCTGG?CATAATGGTTTCCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTACACACCCTCACGCGTAATGAAAGTAAATGGAGGTGGGAATTT??????????CGAAAGGGATGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGATGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA??????????????????????????????????????? Tuber_brumale_GB22_Italy ??????????????????????AG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACTATTCGTG--TCTGAGTTGTAATTTGGAGAGGCAACTTCAGGT-GGGACCC?AGTCTATATTCCTTGGAACAGGATGTCATAGAGGGTGAGAATCCCGTTCATGG-CTGGATGTT?CCCGTTAGTATGTA?GTGCCTTCTACGAGTCGAGTTGTTTGAGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACATAGCCTATGGCAAACAAC?--TGTCCTTCTGGGTAG------------------TGCACTTGTCAAAGG-TTAGGCCAGCATCAGTTAGGATGGTGGGAGAAAGACTAGGAGAATGTGACTCCAATTTGG--AGTGTT?ATAGATCCTGG----TGTCATGCCATCTGTCCTGACTGTGGACCGCGC-TTCGGCTAGGATGCTGG?CATAATGGTTTCCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTACACACCCTCACGCGTAATGAAAGTAAATGGAGGTGGGAATTT??????????CGAAAGGGATGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCA???????????????????????????????????????????????????????????????????????? Tuber_californicum_JT28058_California ?????????????????????????GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTAA-CGCCTCTGGTG--TTCGAGTTGTAATTTGGAGAGGCATCTTCCGGA-GGGGCCC?AGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCTTGG-CTGGATGTT?CCCTCCTTTATGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGAGTCAGCCTTTGGCAAACAAT?--TGTCCTTTGGGGCGG------------------TGCACTTGTCATTGG-TTGGGCCAGCATCGATTGGGACGGTGGGATAAAGGCTTGGGAAATGTGACTCCATTACGG--AGTGTT?ATAGTCCCAGG----TGTCATGCCATCAGTCCCGATCGTGGACCGCGC-TTTGGCTCGGATGCTGG?CTTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGCTTCAAACCCTTACGCGTAATGAAAGTGAACGGAGGTGGGAACCC??????????TGAAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGAC?????????????????????????????????????????????? Tuber_canaliculatum_JT28215_New_Jersey ????????GAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAGA-AGCTCAAATTT-GAAATCTGG-CGTCTGCGACG--CCCGAGTTGTACTTTGGAGAGGCATCTTCCGGA-GGGGCCC?AGCCTATGTGCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTTCTCGG-CCGGATGTC?CCCTCCCGTATGCA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGACCTTTGACGAACAAC?--GGTCCCTTCCGGCAG------------------TGCACTCGTCATCGG-TCGGGCCAGCATCGGTTGGGACGGCGGGATAAAGGTCCGGGGAATGTGACTCCGTCCAGG--AGTGTT?ATAGCCCCGGG----CGCCATGCTGCCCGTCCCGACCGTGGACCGCGC-TTCGGCTAGGATGCTGG?CGTAATGGTCTTCA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_canaliculatum_OSC59072_West_Virginia ?????????????????????????????TG-CCTCAGTAACGGCGAGTGAAGCGGCAGA-AGCTCAAATTT-GAAATCTGG-CGTCTGCGACG--CCCGAGTTGTACTTTGGAGAGGCATCTTCCGGA-GGGGCCC?AGCCTATGTGCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTTCTCGG-CTGGATGTC?CCCTCCCGTATGCA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGACCTTTGACGAACAAC?-GGTCCCTTCCGGGCGG------------------TGCACTCGTCATCGG-TCGGGCCAGCATCGGTTGGGACGGCGGGATAAAGGTCCGGGGAATGTGACTCCGTCCAGG--AGTGTT?ATAGCCCCTGG----CGCCATGCTGCCCGTCCCGACCGTGGACCGCGC-TTCGGCTAGGATGCTGG?CGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGCTCCAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC??????????CGCAGGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATC?A--?C?TCTAGTAG?????????????????????????? Tuber_castellanoi_JT19924_California_paratype ????????GAAAAGAAACCAACAG-GGATTG?CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT?GAAATCTGG-CGCCCACCAGCG-TCCGAGTTGTACTTTGGAGAGGCATCTTCGTGA?GGGGTCC?AGCCTATGTTCCTTGGAACAGGGCGTCACAGAGGGTGAGAATCCCGTTCGTGG-CTGGATACC-CCTTGTAGTATGTA?GTGTCTTCAATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGTCAGCCTTTGACAAACAAC---ATTCCATCTGGATAG------------------TGCACTTGTCATTGG-CTGGGCCAGCATCAGTTGGGACGGTAGGATAAAGGCCTTGGGAATGTGACTCCCTTCCGG--AGTGTT-ATAGCCCCTGG----TGTCATGCTGCCTGCCCTGACTGTGGACCGCGC?TTCGGCTTGGATGCTGG-CTTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTCAAAACCCTCATGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------TGCAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT?GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG?TATAGGGGCG-AAAGACTAATCGAACCATC????????????????????????????????? Tuber_castellanoi_JT28069_California_holotype ????????GAAAAGAAACCAACAG-GGATTG?CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT?GAAATCTGG-CGCCCACCAGCG-TCCGAGTTGTACTTTGGAGAGGCATCTTCGTGA?GGGGTCC?AGCCTATGTTCCTTGGAACAGGGCGTCACAGAGGGTGAGAATCCCGTTCGTGG-CTGGATACC-CCTTGTAGTATGTA?GTGTCTTCAATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGTCAGCCTTTGACAAACAAC---ATTCCATCTGGATAG------------------TGCACTTGTCATTGG-CTGGGCCAGCATCAGTTGGGACGGTAGGATAAAGGCCTTGGGAATGTGACTCCCTTCCGG--AGTGTT-ATAGCCCCTGG----TGTCATGCTGCCTGCCCTGACTGTGGACCGCGC?TTCGGCTTGGATGCTGG-CTTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTCAAAACCCTCATGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------TGCAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT?GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG?TATAGGGGCG-AAAGACTAATCGAACC???????????????????????????????????? Tuber_cf_borchii_China AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CC-TAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACCTCTGGTG--TCCGAGTTGTACTTTGGAGAGGCATCTTCTGGA-GGGGCCC-AGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTCCTTGG-CTGGATGTTCCCCTCCTGTATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGAGTCAGCCTTTGGCAAACAAC--TGTCCCTTTTGGGTGG------------------TGCACTTGTCATCGG-TTGGGCCAGCATCGGTTGGGACGGCAGGATAAAGGCCCGGGGAATGTGACTCCTCTATGG--AGTGTT-ATAGCCTCAGG----CGGCATGCTGTCAGCCCCAACCGTGGACCGCGC-CTCGGCTCGGATGCTGG-CTTAATGGCCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTCCAAACCCTCACGCGTAATGAAAGTAAACGGAGGTGGGAACT?----------TGAAAGGGGCGCACCATCGA-CCGATCCTGATGTATTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCG??????????????????????????????????????????????????????????????????????????? Tuber_dryophilum_GB35_Italy ??????????????????????AG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CATCTTTGGTG--TCCGAGTTGTACTTTGGAGAGGCATCTTCTGGA-GGGGCCC?AGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTCCTTGG-CTGGATGTT?CCCTCCTGTATGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGAGTCAGCCTTTGGCAAACAAC?TGTCCATTTAGGGGCGG------------------TGCACTTGTTATTGG-TTGGGCCAGCATCGGTTGGGACGGCAGGATAAAGGCCCGGGGAATGTGACTCCTTCATGG--AGTGTT?ATAGTCCTGGG----CGGCATGCTGTCAGCCCCGACCGTGGACCGCGC-CTCGGCTCGGATGCTGG?CTTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTTCAAACCCTCACGCGTAATGAAAGTAAACGGAGGTGGGAACCC??????????TGAAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT?GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG?TATAGGGGCG-AAAGACTAATCG???????????????????????????????????????? Tuber_dryophilum_GB37_Italy ??????????????????????AG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CATCTTTGGTG--TCCGAGTTGTACTTTGGAGAGGCATCTTCTGGA-GGGGCCC?AGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTCCTTGG-CTGGATGTT?CCCTCCTGTATGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGAGTCAGCCTTTGGCAAACAAC?TGTCCATTTAGGGGCGG------------------TGCACTTGTTATTGG-TTGGGCCAGCATCGGTTGGGACGGCAGGATAAAGGCCCGGGGAATGTGACTCCTTCATGG--AGTGTT?ATAGTCCTGGG----CGGCATGCTGTCAGCCCCGACCGTGGACCGCGC-CTCGGCTCGGATGCTGG?CTTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTTCAAACCCTCACGCGTAATGAAAGTAAACGGAGGTGGGAACCC??????????TGAAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT?GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG?TATAGGGGCG-AAAGACTAATCG???????????????????????????????????????? Tuber_excavatum_BM100_Spain ????????GAAAAGAAACCAACAGGGGATGGCCCCCAGTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGA-CGTCCACGGCG--TCCGAGTTGTAATTTGGAGAGGCATCTTTGGGA?GGGGCCC?AGTCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTTGG-CTGGATGTT-CCCTCCCGGAAAAA?GCGCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGAGTCAACCTCTGACAAACAAC---TGTCCTTCTGGGCGG------------------TGCACTTGTCCGGGG-TTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCCCTGAGG--AGTGTT-ATAGCCCCGGG----CGCAATGCCGCCCGACCCGACTGTGGACCGCGC?TTCGGCTAGGATGCTGA-CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------CTTCTGGGGTGCACCATCGA-CCGATCCTGATGTCCTCGGATGGATTT?GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAACGGTTCTGACGTGCAA-TCGATCGTCAAATTTGGG-??TATGGGCG-AAAGACTAATCAACCCTCTAGTACTGGTTCCTGCCAATTTTCCCTCAGGA?? Tuber_excavatum_OSC80639_Italy ??????????????????????????????G-CCCCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CGCCTCCGGCG--TCCGAGTTGTAATTTGGAGAGGCATCTTTGGGA?GGGGCCC?AGCCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTTGG-CTGGATGTT-CCCTCCCCTATAAA?GCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCCCTGACAAACAAC---TGTCCTTCTGGGCGG------------------TGCACTTGTCCTGGG-CTGGGCCAGCATCAGTTGGGACGGTGGGATAAAGGCCTCGGGAATGTGACTCCGCTCAGG--AGTGTT-ATAGCCCTTGG----TGCAATGCCGCCCGACCCGACTGTGGACCGCGC?TTCGGCTAGGATGCTGG-CGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAATCC----------CGTCAGGGATGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT?GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG?TATAGGGGCG-AAAGACTAATCGAACCATCTAGTAGCTGGTCCTGCCAAGTTTCCCCTCAG?? Tuber_ferrugineum_MA2721_Italy ????????GAAAAGAAACCAACAG-GGATTG-CCT{CT}AGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CGCCTCTGGTG--TCCGAGTTGTAATTTGGAGAGGCATCTTCCGGA-GGGGTCC?AGCCTATGTTCCTTGGAACAGGACATCATAGAGGGTGAGAATCCCGTTCATGG-CTGGATATA?CCCTTCAGTAGGTA?GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTGGGCAAACAGC---CTTCCTTCTGGGTGG------------------TGCACTTGCCCTTGG-CTGGGCCAGCATCAGTTAGGGTGGTGGAATAAAGGCTTGAGGAATGTGACTCCACTTAGG--AGTGTT?ATAGCCTCAGG----TGCCATCCCACCTGCCCTGACTGTGGACCGCGC-TTTGGCTAGGATGCTGG?CGTAATGGTCTTTA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_fulgens_M2435_Italy AAGCGGAGGAAAAGAAACCAACAG-GGATTGCCCCAAGTAACGGCGAGTGAAGCGGCAAAGAGCTCAAATTT-GAAATCTGA-TGCCTACGGTG--TCCGAGTTGTAATTTGGAGAGGCATCTTTGGGA-TGGGCCC-AGCCTAAGCGCCTTGGAACAGCGTGTCATAGAGGGTGAGAATCCCGTTCTCGG-CTGGATGTT-CCCTCCCGTAAAAA-GCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAAC---TGTCCTTCTGGGCGG------------------TGCACTTGTCTTGGG-CTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCCCTGAGG--AGTGTT-ATAGCCCTGGG----TGCAATGCTGCCCGACCTGACTGTGGACCGCGC-TTCGGCTAGGATGCTGG-CTTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------CGTCAGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTAGCTGGGTCCTGCCGAAGTTTCCCTC?? Tuber_gennadii_BM667_Spain ??????????????????????????????G-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CGCCTCCGGTG--CTCGAGTTGTAATTTGGAGAGGCAACTTTGGGA-GGGGCCC?GGCCCAAGTTCCTTGGAACAGGGCGTCACAGAGGGTGAGAATCCCGTTCGTGG-CCGGAGACC?CCATCCCGCGCAAA?GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAACACTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCCTTGGCAAACAAC?-CTTCCCTCGTGGGGGG------------------TGCACTTGTCATGGG-CTGGGCCAGCATCGGTTGGGACGGCGGGATAAAGGCTCGGGGAATGTGACTCCCTCGTGG--AGTGTT?ATAGCCCCGGG----CGCCATGCCGCCCGTCCCGACCGTGGACCGCGC-TCCGGCTAGGATGCTGG?CATAATGGCCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC??????????CGCGAGGGGCGCACCATCGA-CCGATCCTGATGTCATCGGATGGATTT?GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG?TATAGGGGCG-AAAGACTAATCGA-ACCATC???????????????????????????????? Tuber_gennadii_JT9627_Spain_paratype AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCCGG-CGCCTCCGGTG--CTCGAGTTGTAATTTGGAGAGGCAACTTTGGGA-GGGGCCC-GGCCCAAGTTCCTTGGAACAGGGCGTCACAGAGGGTGAGAATCCCGTTCGTGG-CCGGAGACC-CCATCCCGCGCAAA-GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAACACTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGCCCAGACTCAGCCCTTGGCAAACAAC--CTTCCCTCGTGGGGGG------------------CGCACTTGTCATGGG-CTGGGCCAGCATCGGTTGGGACGGCGGGATAAAGGCTCGGGGAATGTGACTCCCTCGTGG--AGTGTT-ATAGCCCCGGG----CGCCATGCCGCCCGTCCCGACCGTGGACCGCGC-TCCGGCTAGGATGCTGG-CATAATGGCCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------CGCGAGGGGCGCACCATCGA-CCGATCCTGATGTCATCGGATGGATTT-GAGTAGGAGCATAGCTGTTTGGGACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAA-TCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAA??????????????????????????????????????????? Tuber_gennadii_M1904_Italy AAGCGGAGGAAAAGAAAC-AACAG-GGAT-G-CCTCAGTATTGGCGAGTGAAGCGGCAAA-AGCTCAAATATGAAAATCTGG-CGCCTTTGGTGC-CCCGAGTTGTAATTTGGAGAGGCAACTTTTTGGGGGGGGCCCGGCCTAAGTTCTTTGGAACAGGGCGTCATAGAGGGTGAGAATCCCGTTCGCGG-CCGGATGCC-CCGTCCTGCTCAAA-GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTCAACACTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGGCCAGACTCAGTCCTTGGCAAACAAC--CTCTCCTTCTGGTGGG------------------TGCACTTGCCGTGGG-CTGGGCCAGCATCGGTTGGGACGGCGGGATAAAGGCTCAGGGAATGTGACTCCCTCGTGG--AGTGTT-ATAGCCCTGGG----CGTCATGCCGCCCGTCCCGACTGTGGACCGCGC-TTCGGCTAGGATGCTGG-CATAATGGCCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------CGCGAGGGGCGCACCATCGA-CCGATCCTGATGTCCTCGGATGGATTTTGAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAA-TTTGGG-TATAGGGGCGAAA?????????????????????????????????????????????????? Tuber_gibbosum_JT26632_Washington ??????????????????????????????G-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CGCCTGCAAGTG-TCCGAGTTGTACTTTGGAGAGGCATCTTCGTGA-GGGGTCC?AGCCTATGTTCCTTGGAACAGGGCGTCACAGAGGGTGAGAATCCCGTTCGTGG-CTGGATACT?CCTTGCAGTATGTA?GTGTCTTCAATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGTCAGCCTTTGACAAACAAC?--ATTCCTTATGGATAG------------------TGCACTTGTTATTGG-CTGGGCCAGCATCAGTTGGGACGGTAGGATAAAGGCCTTGGGAATGTGACTCCCTTCCGG--AGTGTT?ATAGCCCTTGG----TGCCATACTGCCTGCCCTGACTGTGGACCGCGC-TTCGGCTTGGATGCTGG?CTTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTCAAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC--????????TGCAAGGGGTGCACCATCGACCCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AGTAGGGTGAACCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTTGGGTATAGGGGCG-AAAGA??AATCGA-ACAA??TAG??????G?TCCTGC??A?TTTCCCTCA?? Tuber_gibbosum_JT30580_Oregon ???????????????????????G-G?ATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CGCCTGCAGGTG-TCCGAGTTGTACTTTGGAGAGGCATCTTCGTGA-GGAGTCC?AGCCTATGTTCCTTGGAACAGGGCGTCACAGAGGGTGAGAATCCCGTTCGTGG-CTGGATACT?CCTTGCAGTATGTA?GTGTCTTCAATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGTCAGCCTTTGACAAACAAC?--ATTCCTTATGGATAG------------------TGCACTTGTTATTGG-CTGGGCCAGCATCAGTTGGGACGGTAGGATAAAGGCCTTGGGAATGTGACTCCCTTCCGG--AGTGTT?ATAGCCCTTGG----TGCCATACTGCCTGCCCTGACTGTGGACCGCGC-TTCGGCTTGGATGCTGG?CTTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTCAAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC??????????TGCAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT?GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG?TATAGGGGCG-AAAGACTAATCGA???????????A?CTGG?T?CTGCC?AAGTT?CCCTC?? Tuber_indicum_A_GB236_China AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCCTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CATCTTTGGTG--TCCGAATTGTAATTTGGAGAGGCAACTTCAGGC-AGGACCC-AGTCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCTTGA-CTGGCTGTT-CCTGCTAGTATGTA-GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTTGGCAAACAAG---TGTCCTTCTGGGCAG------------------TGCACTTGCCTTGGG-TTGGGCCAGTATCAGTTAGGATGGTAGGAGAAAGGCTAGGGGAATGTGACTCCTATTTGG--AGTGTT-ATAGACCCTGG----TGTCATGCTACCCGTCCTGACTGTGGACCGCGC-ATTAGCTAGGATACTGG-CGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTACACACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAATTC----------CGCAAGGAATGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG---TA??????GAAAGACT????????????????????????????????????????????? Tuber_indicum_A_GB240_China AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCCTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CATCTTTGGTG--TCCGAATTGTAATTTGGAGAGGCAACTTCAGGC-AGGACCC-AGTCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCTTGA-CTGGCTGTT-CCTGCTAGTACGTA-GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTTGGCAAACAAG---TGTCCTTCTGGGCAG------------------TGCACTTGCCTTGGG-TTGGGCCAGTATCAGTTAGGATGGTAGGAGAAAGGCTAGGGGAATGTGACTCCTATTTGG--AGTGTT-ATAGACCCTGG----TGTCATGCTACCCGTCCTGACTGTGGACCGCGC-ATTAGCTAGGATACTGG-CGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTACACACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAATTC----------CGCAAGGAATGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG---TA??????GAAAGA??????????????????????????????????????????????? Tuber_indicum_B_GB237_China ????????GAAAAGAAACCAACAG-GGATTG?CCCTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT?GAAATCTGG-CATCTTTGGTG--TCCGAATTGTAATTTGGAGAGGCAACTTCAGGT?AGGACCC?AGTCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCTTGA-CTGGATGTT-CTTGCTAGTATGTA?GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTTGGCAAACAAG---TGTCC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_indicum_B_GB339_China TAACGGAGGAAAAGAAACCAACAG-GGATTG?CCCTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT?GAAATCTGG-CATCTTTGGTG--TCCGAATTGTAATTTGGAGAGGCAACTTCAGGT?AGGACCC?AGTCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCTTGA-CTGGATGTT-CTTGCTAGTATGTAAGTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTTGGCAAACAAG---TGTCCTTCTGGGCAG------------------TGCACTTGCCTCAGG-TTGGGCCAGTATCAGTTAGGATGGTAGGAGAAAGGCTAGGGGAATGTGACTCCTATCTGG--AGTGTT-ATAGACCCTGG----CGTCATGCTACCTGTCCTGACTGTGGACCGCGC?GTTAGCTAGGATACTGG-CGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTACACACCCTCACGCGTAATGAAAGTAAGCGGAGGTGGGAATTC----------CGTAAGGAACGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT?GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGT?????????????????????????????????????????????????????????????????????????? Tuber_indicum_B_JT29410_Oregon ??????????????????????AG-GGATTG-CCCTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CATCTTTGGTG--TCCGAATTGTAATTTGGAGAGGCAACTTCAGGT-AGGACCC?AGTCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCTTGA-CTGGATGTT?CTTGCTAGTATGTA?GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTTGGCAAACAAG?--TGTCCTTCTGGGCAG------------------TGCACTTGCCTCAGG-TTGGGCCAGTATCAGTTAGGATGGTAGGAGAAAGGCTAGGGGAATGTGACTCCTATCTGG--AGTGTT?ATAGACCCTGG----CGTCATGCTACCTGTCCTGACTGTGGACCGCGC-GTTAGCTAGGATACTGG?CGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTACACACCCTCACGCGTAATGAAAGTAAGCGGAGGTGGGAATTC??????????CGTAAGGAATGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTAGCTGGTTCCTGCCGAAGTTCCCCTC?? Tuber_liaotongense_OSC87602_China ????????GAAAAGAAACCAACAG-GGATTG-CCT{CT}AGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACCCC{CT}GGTG--TCCGAGTTGTAATTTGGAGAGGCGTCTTCCGGA-GGGGTCC-AGCCCATGTTCCTTGGAACAGGACATCACAGAGGGTGAGAATCCCGTTTACGG-CTGGATATA-CCCTCCAGTAGGTA-GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTGGACAAACAAC---TTTCCTTCTGGGTGG------------------TGCACTTGTCCTCGG-CTGGGCCAGCATCAGTTAGGGTGGTGGAATAAAGGCTTGTGGAATGTGACTCCATTTTGG--AGTGTT-ATAGCC{AT}CAGG----TGCCATCTCACCTGCCCTGACTGTGGACCGCGC-TTTGGCTAGGATGCTGG-CGTAATGGTCTTTA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_lyonii_GA21_Georgia ????????GAAAAGAAACCAACAG-GGATTG-CCCCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACCCCTGGTG--TCCGAGTTGTAATTTGGAGAGGCATCTTCCGGA-GGGACCC?AGCCTATGTTCCTTGGAACAGGACATCACAGAGGGTGAGAATCCCGTTCATGG-CTGGATGTA?TCCT{CT}CAGTGGGTA?GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTTGGCAAACAAT?--TGTCCTTCTGGACGG------------------TGCACTTGCCCTTGG-CTGGGCCAGCATCAGTTAGGACGGTGGAATAAAGGCTCGAGGAATGTGACTCCACT{AT}CGG--AGTGTT?ATAGCCTCGAG----TGCCATACTACCTGT{CT}TTGACTGTGGACCGCGC-{CT}TT{GT}GCTAGGATGCTGG?CATAATGGTCTTTA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_lyonii_OSC58244_Texas AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACCTCTGGTG--TCCGAGTTGTAATTTGGAGAGGCATCTTCCGGA-GGGGCCC-AGCCTATGTTCCTTGGAACAGGACATCGCAGAGGGTGAGAATCCCGTTCATGG-CTGGATGTA-CCCTTCAGTCGGTA-GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTTGGCAAACAAT---TATCCTTCTGGATGG------------------TGCACTTGCCCTTGG-CTGGGCCAGCATCAGTTAGGACGGTGGAATAAAGGCTCGAGGAATGTGACTCCACTGCGG--AGTGTT-ATAGCCTCGAG----TGTCATACTACCTGTCTTGACTGTGGACCGCGC-TCCGGCTAGGATGCTGG-CGTAATGGTCTTTAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTGTAGACCCTCACGCGTAATGAAAGTGAACGGGGGTGGGAACCC----------TGC?AGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_macrosporum_JT13362_Italy ????????GAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAGA-AGCTCAAATTT-GAAATCTGG-CGTCTGCGGCG--CCCGAGTTGTACTTTGGAGAGGCATCTTCCGGA-GGGGCCC?GGCCTATGTGCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTTCTCGG-CCGGATGTC?CCCTCCGGCATGCA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGGCCTTTGACGAACAAT?--AGTCCTTCTGGGCTG------------------TGCACTTGTCATCGG-CTGGGCCAGCATCGGTTGGGACGGCGGGATAAAGGTCCGGGGAATGTGACTCCTTCCAGG--AGTGTT?ATAGCCCCGGG----CGCCATGCCGCCCGTCCCGACCGTGGACCGCGC-TTCGGCTAGGATGCTGG?CGTAATGGTCTTCA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_magnatum_GB12_Italy ????????GAAAAGAAACCAACAG-GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAGA-AGCTCAAATTT-GAAATCTGG-CACCTACGGTG--TCCGAGTTGTAATTTGAAGAGGCAACTTTGGGA-GGGTCCC?GGTCTATGTTCCTTGGAACAGGACATCGCAGAGGGTGAGAATCCCGTTCTCGG-TCGGATGGG??CCTCCCTTACAAAAGTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAGGCTAAACATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCGGTAGACAAACAGC?--TGCCCTTCTGGGTAG------------------TGCACTTGTCTGCCG-GTGGGCCAGCATCGGTTGGGGTGGTGGGATAAAGGCTAGGGCAATGTGACTCCTCTGAGG--AGTGTTTATAGGCCCGAG----TGCAATGCTGCCCGCCCCGACCGTGGACCGCGC-TTCCGCTAGGATGCTGG?CGTAATGGTCTTCA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_magnatum_GB13_Italy ????????GAAAAGAAACCAACAG-GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAGA-AGCTCAAATTT-GAAATCTGG-CACCTACGGTG--TCCGAGTTGTAATTTGAAGAGGCAACTTTGGGA-GGGTCCC-GGTCTATGTTCCTTGGAACAGGACATCGCAGAGGGTGAGAATCCCGTTCTCGG-TCGGATGGG--CCTCCCTTACAAAAGTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAGGCTAAACATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCGGTAGACAAACAGC---TGCCCTTCTGGGTAG------------------TGCACTTGTCTGCCG-GTGGGCCAGCATCGGTTGGGGTGGTGGGATAAAGGCTAGGGCAATGTGACTCCTCTGAGG--AGTGTT-ATAGGCCCGAG----TGCAATGCTGCCCGCCCCGACCGTGGACCGCGC-TTCCGCTAGGATGCTGG-CGTAATGGTCTTCA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_malacodermum_JT32319_Spain AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CGC-TCCGGTG--TCCGAGTTGTAATTTGGAGAGGCATCTTCCGGA-GGGGTCC-AGCCTATGTTCCTTGGAACAGGACATCACAGAGGGTGAGAATCCCGTGCATGG-CTGGATGTGCCCCTTCATTAGGTA-GTGCCTTCTATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTGGGCGAACAAC---TATCCTTCTGGATGG------------------TGCACTTGTCCAGGG-CTGGGCCAGCATCAGTTAGGACGGGGGAATAAAGGCTCGGGGAATGTGACTCCTCGTTGG--AGTGTT-ATAGCCTCGGG----TGCCATCCCTCCTGTCCTGACTGTGGACCGCGC-TTCGGCTAGGATGCTGG-CGTAATGGTCTTTAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTGCAGACCCTCACGCGTAATAAAAGTGAATGGAGGTGGGAACCC----------TGAAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATT?GGG-TA????????????????????????????????????????????????????????????? Tuber_melanosporum_GB200_Italy ??????????????????????AG-GGATTG-CCCTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACCTTTGGTG--TCCGAATTGTAATTTGGAGAGGCAACTTCGGGT-AGGACCC?AGTCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCATGA-CTGGATGTT?CCTACTAGTACGTA?GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTTGGTAAACAAG?--TGTCCTTCTGGGCAT------------------TGCACTTGCCTCGGG-TTGGGCCAGTATCAGTTAGGATGGTAGGAGAAAGGCCAGGGGAATGTGACTCCATTTTGG--AGTGTT?ATAGATCCTGG----TGTCATGCTACCTGTCCTGACTGTGGACCGCGC-ATTAGCTAGGATACTGG?CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTACACACCCTCACGCGTAATGAAAGTAAACGGAGGTGGGAATTC??????????TGCAAGGAATGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA??????????????????????????????????????? Tuber_mesentericum_CW105_Sweden ????????GAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGG-CGCCACCGGCG--TCCGAGTTGTAATTTGGAGAGGCATCTTCAGGA-GGGGCCC?GGCCTATGTTCCTTGGAACAGGGCGTCGCAGAGGGTGAGAATCCCGTTCTCGG-CCGGACCGT?CCCTCCGGCTCGAA?GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCAAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGGCCATCA?CTAATACC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_multimaculatum_OSC62169_Spain_paratype AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-TACCTGTGGTA--CCCGAATTGTAATTTGGAGAGGCATCTTCTGGA-GTGGCCC-AGCCTATGTTCCTTGGAACAGGACATCATAGAGGGTGAGAATCCCGTTCTTGG-CTGGATGTT-ACCTCCTGTATGTA-GTGTCTTCTATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATTGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGTACAAGTA-GAGTGATCGAAAGATGAAAAGTACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACACAGCCTTTGGCAAACAAC---TGTCCTTTGGGGTAG------------------TGCACTTGTCCTTGG-CTGGGCCAGCATCAGTTGTGGCGGTAGGATAAAGACCTGGGGAATGTGACTCCATTTAGG--AGTGTT-ATAGCCCCTGG----TATCATGCTGCCTGCCACGACTGTGGACCGCGC-TTTGGCTAGGATGCTGG-CATAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCTAAACCCTTACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------TGAGAGGGGTGCACTATCGA-CCGATCCTGAAGTTTACGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTC?? Tuber_nitidum_BM105_Spain ????????????????????????????????????????????CGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACCTCCGGTG--TCCGAGTTGTAATTTGGAGAGGCATCTTCCGGG-GGGGTCC?AGCCTATGTTCCTTGGAACAGGACATCACAGAGGGTGAGAATCCCGTTCATGG-TTGGATGTA?CCCTTCGTCAGGTG?GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTGGACAAACCTC?-----CCTTCTGGGTGG-------------------ACACCTGACCTTGG-CTGGGCCAGCATCAGTTAGGACGGTGGAATAAAGGCTCGAGGAATGTGACTCCACTTAGG--AGTGTT?ATAGCCTCGGG----TGCCATCCCACCTGCCCTGACTGTGGACCGCGC-TTCGGCTAGGATGCTGG?CATAATGGTCTTTAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTACAGACCCTCACGCGTAATAAAAGTGAACGGAGGTGGGAACCC??????????CGAGTGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTAGCT???????????????????????? Tuber_oregonense_GB284_Oregon_holotype ???????????????????????G-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-TAAATCTGA-CGCCCACAAGCG-TTCGAGTTGTACTTTGGAGAGGCATCTTCGTAA-GGGGTCC?AGCCTATGTTCCTTGGAACAGGGCGTCATAGAGGGTGAGAATCCCGTTCATGG-CTGGATACT?CCTTGTATTATGTA?GTGTCTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGTCAGTCGATTATAAACAAC?--TTTCCTTCTGGATGG------------------TGCACTTATTATTGA-TTGGGCCAGCATCAGTTGGGACGGCAGGATAAAGGCCATGGGAATGTGACTCCATTTTGG--AGTGTT?ATAGCCCCTGG----TGCCATGCTGTCTGCCCTGACTGTGGACCGCGC-TTCGGCTTGGATGCTGG?CTTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTCAAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC??????????TGCAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGC?-AAAGACT?ATCGA-ACCATCT??TAG?????????????????????????? Tuber_oregonense_JT30493_Oregon_paratype ????????????????????????????????????????????????????????????????????????????????????????????GCG-TTCGAGTTGTACTTTGGAGAGGCATCTTCGTAA-GGGGTCC?AGCCTATGTTCCTTGGAACAGGGCGTCATAGAGGGTGAGAATCCCGTTCATGG-CTGGATACT?CCTTGTATTATGTA?GTGTCTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGTCAGTCGATTATAAACAAC?--TTTCCTTCTGGATGG------------------TGCACTTATTATTGA-TTGGGCCAGCATCAGTTGGGACGGCAGGATAAAGGCCATGGGAATGTGACTCCATTTCGG--AGTGTT?ATAGCCCCTGG----TGCCATGCTGTCTGCCCTGACTGTGGACCGCGC-TTCGGCTTGGATGCTGG?CTTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTCAAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC??????????TGCAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT?GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTAGCTGGTTCCTGCC?AAGTTTC?????? Tuber_panniferum_JT12835_Spain AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAG-AGCTCAAATTT-GAAATCTGGCGTCATTCAGGCG-TCCGAGTTGTAATTTGGAGAGGCACCTTGCACT-CGGGTCCCGGCCTATGTTCCTTTGAACAGGACGTCGCAGAGGGTGAGAATCCCGTTCTCGG-CAGGGCTTC?CCGTGCGGCTTGGG?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGGCCATGGACTAACAGC?-TTTCCCTCCCGGACGG------------------TGCACTTGTCCCTGG-CCGGGCCAGCATCGGTTGGGGCGGCGGGACAAAGGCCGCGGGAATGTGACTCCCTCGTGG--AGTGTT?ATAGCCCGCGG----CGCAATGCCGCCTGCCTCGACCGAGGACCGCGC-TTCGGCTAGGATGCTGG?CGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTTCAAACCCTAGCGCGTAATGAAAGTGAACGGAGGTGGGAACCC??????????CGCGAGGGGCGCACCATCGA-CCGATCCTGATGTCCTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTC?? Tuber_panniferum_JT4969_France ???????????????????????????????????????????????????AGCGGCAAG-AGCTCAAATTT-GAAATCTGGCGTCATTCGGGCG-TCCGAGTTGTAATTTGGAGAGGCACCTTGCACT-CGGGTCCCGGCCTATGTTCCTTTGAACAGGACGTCGCAGAGGGTGAGAACCCCGTTCTCGG-CAGGGCGTC?CCGTGCGGCTTGGG?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGGCCATGGACTAACAGC?-TTTCCTTCCCGGACGG------------------TGCACTTGTCCTTGG-CCGGGCCAGCATCGGTTGGGGCGGTGGGACAAAGGCCGCGGGAATGTGACTCCCTCGTGG--AGTGTT?ATAGCCCGTGG----CGCAATGCCGCCTGCCTCGACCGAGGACCGCGC-TTCGGCTAGGATGCTGG?CGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTTCAAACCCTAGCGCGTAATGAAAGTGAA{AC}GTAGGTGGGAACCC??????????CGCAAGGGGCGTACCATCGA-CCGATCCTGATGTCCTCGGATGGATTTTGAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGC????????????????????????????????????????????????????????????????????????????????????? Tuber_pseudoexcavatum_CJ408_China ??????????????????CAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGA-CACCTCTGGTG--TTCGAGTTGTAATTTGGAGAGGCAACTTCAGGT-AGAATCC?AGCCTATGTTCCTTGGAACAGGAGGTCATAGAGGGTGAGAATCCCGTTTGTGG-CTGGATGTT?TCTACTAGTATGTA?GCGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTTGGCAAACAAT?--AGTCCTTTAGGATTG------------------TGCACTTGTCTTGGG-CTGGGCCAGCATCAGTTAGGATGGTAGGAGAAAGGTTGGGAAAATGTGACTCCAATTTGG--AGTGTT?ATAGATTCCAG----CGTCATGCTATCTATCCTGACTGTGGACCGCGC-TTTGGCTAGGATGCTGG?CATAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGTTACACACCCTCACGCGTAATGAAAGTAAACGGAGGTGGGAATCC??????????TGTAAAGGTTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGACTAATCGA-ACCATCTAGTAGCTGGTTCTGCGAT????????????? Tuber_regimontanum_ITCV909_Mexico_holotype ?????????????????CCAACAG-GGATTG-CCCTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACCTTTGGTG--TCCGAATTGTAATTTGGAGAGGCAACTTCAGGT-AGGACCC-AGTCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTTCTTGA-CTGGATGTT-CCTGCTAGTATGTA-GTGCCTTCTATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTTGGCAAACAAC---TGTCCCTTTGGGCAG------------------TGCACTTGCCTCAAG-TTGGGCCAGTATCGGTTAGGATGGTAGGAGAAAGGCTAGGGGAATGTGACTCCTATTTGG--AGTGTT-ATAGATCCTGG----TGTCATGCTACCTGTCCTGACCGTGGACCGCGC-TTTGGCTAGGATACTGG-CGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTACACACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAATTC----------TGCAAGGAATGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGTGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAATAC?????????????????????????????????????????????? Tuber_rufum_GB213_Italy AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CAC-TCCGGTG--TCCGAGTTGTAATTTGGAGAGGCGTCTTCCGGA-GGGGTCC-AGCCTATGTTCCTTGGAACAGGACATCATAGAGGGTGAGAATCCCGTTCATGG-TTGGATGTA-CCCTTCAGTAGGTA-GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGGGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTGGGCATGC------CTCCCTTCTGGGTGG------------------CGTACTTGCCCTTGG-CTGGGCCAGCATCAGTTAGGACGGTGGAATAAAGGCTTGGGGAATGTGACTCCTCTGAGG--AGTGTT-ATAGCCTCGGG----TGCCATCCTGCCTGCCCTGACTGTGGACCGCGC-TTTGGCTAGGATGCTGG-CATAATGGTCTTTAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTACAGACCCTCACGCGTAATAAAAGTGAACGGAGGTGGGAACCC----------TGAGAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG???????????????????????????????????????????????????????????????? Tuber_sancarloensis_ITCV181_Mexico_holotype ????????GAAAAGAAACCAACAG-GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGA-CACCTCTGGTG--TTCGAGTTGTAATTTGGAGAGGCATCTTCTGGA-GGGGCCC?AGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTACTTGG-CTGGATGTT?CCCTCCTGTATGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTAGGACCAGACCTGGGGAATAGCAAACAAT?CGCCCACCG--GGGCGG------------------TGCACTTGTTACTCC-TCGGGCCAGCATGGGTTGGGACGGTGGGATAAAGACTCGGGAAATGTGACTCCTTCGTGG--AGTGTT?ATAGTCCCGGG----TGGCATGCCATCAGTCCCGACTGTGGAACGCGC-ACCGGCACGGATGCTGG?CATAATGGTCTTCA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sancarloensis_ITCV885_Mexico ?????????????????????????????????????????????????????CGGCAAA-AGCTCAAATTT-GAAATCTGA-CACCTCTGGTG--TTCGAGTTGTAATTTGGAGAGGCATCTTCTGGA-GGGGCTC-AGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTACTTGG-CTGGATGTT-CCCTCCTGTATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTAGGACCAGACCCGGAGTATAGCAAACAAT---CGCCCACCGGGGCGG------------------TGCACTTGTTATGGT-TCGGGCCAGCATGGGTTGGGACGGTGGGATAAAGACTCGGGAAATGTGACTCCTTCGTGG--AGTGTT-ATAGTCCCGGG----TGGCATGCCATCAGTCCCGACTGTGGAACGCGC-ACCGGCACGGATGCTGGGCATAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTTCAAACCCTTACGCATAATGAAAGTGAACGGAGGTGGGAACCC----TGGATAAAAGCGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCCGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAA-TTTGGGGTATAGGGGCG-AAAGACTAATCGA-A???TCTAGTA?CTGGTTCCTGCCGAAGTTTCCCTC?? Tuber_shearii_JT12498_North_Carolina ??????????????????CAAAAG-GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGA-TATCTCTGATG--TCCGAGTTGTAATTTGGAGAGACATCTTCTGGA-GGGGCCC?AGCCTATGTGCCTTGGAACAGGACATCATAGAGGGTGAGAATCCCGTTCTTGG-CTGGATGTT?CCCTCCCCTATGTG?GAGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGTCAGCCTTTGGCAAACAAC?--TGTCCTTATGGGCGG------------------TGCACTTGTCATTGG-TTGGGTCAGCATCGGTTGGGACGGTAGGATAAAGGCTTGGGAAATGTGACTCCTTTATGG--AGTGTT?ATAGTCCCGGG----TGGCATGCTATCAGTCTCGACCGTGGACCGCGC-CTTGGCTCGGATGCTGG?CTTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp_ITCV908_Mexico AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACCCCTGGTG--TCCGAGTTGTAATTTGGAGAGGCATCTTCCGGA-GGGGCCC-AGCCTATGTTCCTTGGAATAGGACATCACAGAGGGTGAGAATCCCGTTCATGG-CTGGATGTA-CCCTTCAGTCGGTA-GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTTGGCAAACAAT---TGTCCTTCTGGATGG------------------TGCACTTGCCCTTGG-CTGGGCCAGCATCAGTTAGGACGGTGGAATAAAGGCTCAAGGAATGTGACTCCACTGCGG--AGTGTT-ATAGCCTTGAG----CGCCATACTACCTGTCTTGACTGTGGACCGCGC-TTCGGCTAGGATGCTGG-CATAATGGCCTTTAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTGTAGACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------TGCGAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCG-AAAGAC?AATCG???????????????????????????????????????? Tuber_sp_ITCV910_Mexico AAGCGG?GGAAAAGAAACCAACAG-GGATTG-CCCTAGTAACGGCGAGTGAAGTGGCAAA-AGCTCAAATTT-GAAATCTGG-CCC-TCTGGT----TTGAGTTGTAATTTGGAGAGGCATCTTCCGTA-GGGGTCC-AGTCAATGTTCCTTGGAATAGGACATCATAGAGGGTGAGAATCCCGTTCATGG-TTGGATGTA-CCCTTCAATAGGTA-GTGCTTTCTATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGTACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTGAACAAACAAC---TTTCCTTCTGGTTGG------------------TGCACTTGCTCTTGG-CTGGGCCAGCATCAGTTGGGACGGTGGAATAAAGGTTTGGGGAATGTGACTCCATTTAGG--AGTGTT-ATAGCCCCAGG----CGCCATCCTACCTGTTCTGACTGTGGACCGCGC-ATTTGCTAGGATGCTGG-CATAATGGTCTTTAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTGTGCAAGTGTTTGGGCTATAGACCCTCACGCGTAATAAAAGTGAATGGAGGTGGGAAGCC----------TGCAAGGGATGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAA?????????????????????????????????????????????????????????????????????? Tuber_sp_JT13224_West_Virginia ??????????????????????????????G-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACCTATGGTG--TCCGAGTTGTAATTTGGAGAGGCATCTTCCGAA-GTGGTCC?AGCCTATGTTCCTTGGAACAGGACATCATAGAGGGTGAGAATCCCGTTCATGG-CTGGATATA?TTCTTCAGTAGGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTGAGAAAACAGC?--TATCCTTTTGGGTGG------------------TGCACTTGCTCTTGG-CTGGGCCAGCATCAGTTAGGGTGGTGGAATAAAGGCTTGAGGAATGTGACTCTACTTAGG--AGTGTT?ATAGCCTCAGG----TGTCATCCCACCTGCTCTGACTGTGGACCGCGC-TTTGGCTAGGATGCTGG?CATAATGGTCTTTAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTATAGACCCTTACGCGGAATAAAAGTGAACGGAGGTGGGAACCC??????????TGTGAGGGGTGCACTATCGA-CCGATCCTGATGTCTTCGGATGGATTT?GAGTAGGAGCATAGCTGTTGGG?ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG?TATAGGGGC?-AAAGACTAATCGA-ACCATCTAGTAGCT???TCCTG?CGAAGTTTCCCCT?? Tuber_sp_JT28121_Japan ????????GAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGT-CATCTCTGGTG--GCCGAGTTGTAATTTGGAGAGGCATCTTCTGGA-GGGGCCC-AGCCTATGTTCCTTGGAACAGGACATCATAGAGGGTGAGAATCCCGTACTTGG-CTGGATGTT--CCTCCTGTAAGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTGGCCAAACAGC---TGTCCTTCTGGGCGG------------------TGCACTTGGTCTCGG-CTGGGCTAGCATCAGTTGGTGTGATAGGATAAAGGCTTTGGAAATGTGACTCCTTTGGGG--AGTGTT-ATAGTCCAAGG----TGTCATGCTGTCAACTCCGACTGTGGACCGCGC-TTTTGCTAGGATGCTGG-CATAATGGTCTTCA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp_JT8755_Florida ??????????????????????????????G-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCCGA-CATCTCTGATG--TTCGAGTTGTAATTTGGAGAGACAACTTCTGGA-GGGACCC-AGTCTATGTGCCTTGGAACAGGACATCATAGAGGGTGAGAATCCCGTTCTTGG-CTGGATGTT-CCCTCCTCCATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGTCAGCCTTTGGCAAACAAC---TGTCCTTATGGGCAG------------------TGCACTTGTCATTGG-TTGGGTCAGCATCGGTTGGGATGGTGGGATAAAGGCTTGGGAAATGTGACTCCTTTATGG--AGTGTT-ATAGTCCCGGG----TGGCATGCCATCAGTCTCGACCGTGGACCGCGC-CTCGGCTCGGATGCTGG-CTTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTTCAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------TGAAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCG?CAAATTTGGGGTATAGGGGCG-AAAGACTAATC??-?CC-TC?AGTAGCTGGTTCCTG?C?AA?TTTCCCTC?? Tuber_sp_RH73_Iowa ????????GAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACTATTGGTG--TCCGAGTTGTAATTTGGAGAGGCAACTTCAGGT-AGGGTCC?AGTCTATGTTCCTTGGAACAGGACATCATAGAGGGTGAGAATCCCGTTCTTGG-CTGGATGTC?CTTGCCGGTATGTA?GTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGTCTTCGGCAAACAGC?TATCCTTCT--GGGTGG------------------TGCACTTGCCTTAGA-CTGGGCCAGCATCAGTTGGGACGGTGAGATAAAGGCCAGGGGAATGTGACTCCATTTAGG--AGTGTT?ATAGACCTTGG----TGCCATGCCACCTGCCCTGACTGTGGACCGCGC-TTTGGCTAGGATGCTGG?CGTAATGGTCTTCA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp_TB10248_New_York AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CC-TAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CGCCTCCGGTG--TCTGAGTTGTAATTTGGAGAGGCATCTTCCGGA-GGGGTCC-AGCCTATGTTCCTTGGAACAGGACATCGCAGAGGGTGAGAATCCCGTTCATGG-ATGGATATA-CCCTTCAGTCGGTA-GTGCTTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTGGGTGAACAAT---CTCCCTTCTGGGTGG------------------TGCACTTGCCCTTGG-CTGGGCCAGCATCGGTTAGGACGGTGGAATAAAGGCTTGAGGAATGTGACTCCGCTTAGG--AGTGTT-ATAGCCTCGGG----TGCCATACTACCTGTTCTGACCGTGGACCGCGC-TTTTGCTAGGATGCTGG-CATAATGGTCTTTAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTACAGACCCTCACGCGAAATAAAAGTGAACGGAGGTGGGAACCC----------CGCAAGAGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGT??????????????????????????????????????????????????????????????????????????????????????? Tuber_sp1_K201_Japan ???????????????????????G-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAGA-AGCTCAAATTT-GAAATCTGG-CGTCTGTGGCG--CCCGAGTTGTACTTTGGAGAGGCATCTTCCGGA-GGGGCCC-AGCCTATGTGCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTCCTCGG-CTGGATCTC-CCCTCCCGTTTGCA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGGCCTTTGACAAACAGC---GATCCCACTGGGTCG------------------TGCACTTGTCGTCGG-CCGGGCCAGCATCGGTTGGGGCGGCGGGATAAAGGCTTGGGGAATGTGACTCCCTTCAGG--AGTGTT-ATAGCCCCGGG----TGCCATGCTGCCCGCCCCGACCGTGGACCGCGC-TTCGGCTAGGATGCTGG-CGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGCTCTAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCC----------GCAGGGGGAGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCCGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCGAAAGACTAATCG????????????????????????????????????????? Tuber_sp14_K186_Japan ?????????????????????????GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CATCTCTGGTG--TCCGAGTTGTACTTTGGAGAGGCATCTTCTGAA-GGGGCCC-AGCCTATGTGCCTTGGAACAGGACATCATAGAGGGTGAGAATCCCGTTTTTGG-CTGGATGTT-CCCTCCTGTATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCACTTGAGACCAGAGTCAGCCTTTGGCAAACAAC--TGTCCCTTCTGGGTGG------------------TGCACTTGTCATTGG-TTGGGCCAGCATCGGTTGGGACGGCTGGATAAAGGCCCAGGGAATGTGACTCCTCTATGG--AGTGTT-ATAGCCCCAGG----TGGCATGCTGTCAGCCCCGACCGTGGACCGCGC-CTTGGCTCGGATGCTGG-CTTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTTCAAACCCTCACGCGTAATGAAAGTAAACAGAGTTGGGAACCC----------TGAAAGGGGCGCATCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCGAAAGACTAATCGAACCATCTAG??????????????????????????????? Tuber_sp2_K215_Japan ??????????????????????????????G-CCTCAGTAACGGCGAGTGAAGCGGCAGA-AGCTCAAATTT-GAAATCTGG-CGCCTGCGGCG--CCCGAGTTGTACTTTGGAGAGGCATCTTCCGGA-GGGGCCC-GGCCTATGTGCCTTGGAACAGGACGTCGCAGAGGGTGAGAATCCCGTTCTTGG-CCGGATGTC-CCCTCCCGTACGAA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGGCCTATGACGAACAAA---GGTGCTTCTGTGCCG------------------TGCACTCGTCACTGG-CCGGGCCAGCATCGGTTGGGACGGCGGGATAAAGGTCCGGGGAATGTGACTCCGTCCAGG--AGTGTT-ATAGCCCCGGA----TGCCATGCCGCCCGTCCCGACCGTGGACCGCGC-TTCGGCTAGGATGCTGG-CGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGCTCCAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCC----------GCAGGGGGAGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCGAAAGACT?????????????????????????????????????????????? Tuber_sp8_K228_Japan ?????????????????????????GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGT-CATCTCTGGTG--GCCGAGTTGTAATTTGGAGAGGCATCTTCTGGA-GGGGCCC-AGCCTATGTTCCTTGGAACAGGACATCATAGAGGGTGAGAATCCCGTACTTGG-CTGGATGTT--CCTCCTGTAAGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTGGCCAAACAGC---TGTCCTTCTGGGCGG------------------TGCACTTGGTCTCGG-CTGGGCTAGCATCAGTTGGTGTGATAGGATAAAGGCTTTGGAAATGTGACTCCTCTTGGGG-AGTGTT-ATAGTCCAAGG----TGTCATGCTGTCAACTCCGACTGTGGACCGCGC-TTTTGCTAGGATGCTGG-CATAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTTCAAACCCTCACGCGTAATGAAAGTAAACGGAGGTGGGAATCC----------TGAAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGAGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCGAAAGACTAATCGAACCATCTAG??????????????????????????????? Tuber_sp9_K214_Japan ???????????????????????G?GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGA-TACCTCTGGTG--TCCGAGTTGTAATTTGGAGAGATATCTTCTGGA-GGGGCCT-AGCCTATGTTCCTTGGAACAGGATGTCATAGAGGGTGAGAATCCCGTTCTTGG-TTAGATGTC--CCTCCTGTATGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTGGCCAAACAGC---TGTCCTTCTGGGCGG------------------TGCACTTGGCCTTGG-CTGGGCCAGCATCAGTTGGGGTGGTGGGATAAAGGCTTTGGGAATGTGACTCCTCTTGAGG-AGTGTT-ATAGCCCGAGG----TGCCATGCCGTCAGCCCCGACTGTGGACCGCGC-TTTTGCTAGGATGCTGG-CATAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAACCCTCACGCGTAATGAAAGTAAACGGAGGTGGGAATCC----------TGAAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG-TATAGGGGCGAAAGACTAATCGA???????????????????????????????????????? Tuber_sphaerosporum_JT19772_Oregon ??????????????????????????????G-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGA-CACCTCTGGTG--TCCGAGTTGTACTTTGGAGAGGCATCTTCTGGA-GGGGCCC?AGCCTATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCTTGG-CTGGATGTT?CCCTTCTGTATGTA?GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGTCAGCCTTTGGCAAACAAC?--TGTCCTTCTGGGCGG------------------TGCACTTGTCATCCG-TTGGGCCAGCATCGGTTGGGACGGCAGGATAAAGACCCAGGGAATGTGACTCCTCTATGG--AGTGTT?ATAGCCCCAGG----TGGCATGCTGTCTGCCTCGACCGTGGACCGCGC-TTTGGCTCGGATGCTGG?CATAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCAAGTGTTTGGGCTCCAAACCCTTACGCGTAATGAAAGTAAACGGAGGTGGGAACCC??????????TGAAAGGGGTGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGGGACCCGAAAGATGGTGAACTATGCCTGAAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTTGGGTATAAGGGGC?AAAGACTAATC??--CCATCT???A?CTGGTTCC?TGCCAAAGTTTCCCT?? Tuber_spinoreticulatum_U188_Maryland_isotype ????????GAAGAGAAACCAACAG-GGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CACCTTTGGTG--TCCGAGTTGTAATTTGGAGAGGCAACTTCCGGA-GGGGCCC?AGCCTATGTTCCTTGGAATAGGACGTCACAGAGGGTGAGAATCCCGTAATTGG-CTGGATGTA?CCCTCCAGTATGTA?GTGCCTTCTATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGTGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGGCAAACAGC?TGTCCTTCT--GGGCGG------------------TGCACTTGCCTGAGG-CTGGGCCAGCATCAGTTGGGATGGTGGGATAAAGACCAGGGGAATGTGACTCCACTCAGG--AGTGTT?ATAGCCTCAGG----TGCCATATCACCTATCCTGACTGTGGACCGCGC-TTTGGCTAGGATGCTGG?CGTAATGGTCTTCA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Underwoodia_beatonii_JT28375_Australia AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CA-CCTTTGGTG-TCCGAGTTGTAATTTGGAGAGGCATCTTCGGGA--GGGACCCAGCCTATCTTCCTTGGAACAGGAGGTCATAGAGGGTGAGAATCCCGTTCTTGG-CCGGATGTTCCCA-CCCGTATGTAAGTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACAGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTGGAGACCAGACTCGGCCTTGGACAAACAAGCC--CCCCTTCTGGAGGT------------------CGCACTTGTCCTCGG-CTGGGCCAGCATCAGTTGGGGTGGCGGGACAAAGGCCCGGCGAATGTGGCTCCCCCAGGGG-AGTGTT-ATAGCGCCGGA----CGCAATGCCGCCCGCCCCGACTGAGGACCGCGC-TTCGGCTAGGATGCTGG-CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTTCAAACCCTCACGCGCAATGAAAGTGAACGGAGGTGGGAACCC---------CTTCCGGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Underwoodia_beatonii_JT28380_Australia AAGCGGAGGAAAAGAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CA-CCTTTGGTG-TCCGAGTTGTAATTTGGAGAGGCATCTTCGGGA--GGGACCCAGCCTATCTTCCTTGGAACAGGAGGTCATAGAGGGTGAGAATCCCGTTCTTGG-CTGGATGTTCCCA-CCCGTATGTAAGTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACAGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTGGAGACCAGACTCGGCCTTGGACAAACAGCC---CCCCTTCTGGAGGT------------------CGCACTTGTCCTCGG-CTGGGCCAGCATCAGTTGGGGTGGCGGGACAAAGGCCCGGCGAATGTGGCTCCCCCAGGGG-AGTGTT-ATAGCGCCGGA----CGCAATGCCGCCCGCCCCGACTGAGGACCGCGC-TTCGGCTAGGATGCTGG-CGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTTCAAACCCTCACGCGCAATGAAAGTGAACGGAGGTGGGAACCC---------CTTCCGGGGGCGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Underwoodia_columnaris_U42685 ??????????????????CAACAG-GGATTG-CCCCAGTAACGGCGAGTGAAGCGGCATG-AGCTCAAATTT-TAAATCTAGTCTCCGTCTGGTGGCCCGAGTTGTAATTTGGAGAGGCACCTTCGGGG-AGGGCGCCGGCCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCCCGG-CCGGCCGTCCCACCCCC-TGTGAA-GGGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACCCGGCCCGTGGCCATCGTCC---CGCCTTCTGGTGGG------------------AGCGCTCGCCTCGGG-TCGGGCCAGCATCAGTTGAGGTGGTGGGATAAAGTCCCGAGAAATGTGGCTCCCTACGGGG-AGTGTT-ATAGTCCCGGGAACATCCAATGCCACCCTCCTCGACTGAGGACCGCGC-TCCGGCTAGGATGCTGG-CGTAAT????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Underwoodia_singeri_JT26159 ?????????????????????????????TG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CG-CTTCCGGTG-TCCGAGTTGTAATTTGGAGAGGCATCTTCTGGG--GGGACCCGGCCTATCTTCCTTGGAACAGGAGGTCACAGAGGGTGAGAATCCCGTCCTTGG-CTGGATGTTCCCC-CCTGTACGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTGGAGACCAGACTCGGCCCCGGATGAACAAGC---CGCCTTCTGGCGGT------------------TGCACTTGTCCTGGG-CCGGGCCAGCATCAGTTGGGGCGGTGGGATAAAGGCGCGCGGAATGTGGCTCCCCTCGGGG-AGTGTT-ATAGCCGCGGG----TGCAATGCCGCCTGCCCCGACTGTGGACCGCGC-TTTGGCTAGGATGCTGG-CGTAATGGTTTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCCTCAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------CGCGAGGGACGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAGGGTGAAGCCAG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Underwoodia_singeri_mes161_Chile ?????????????GAAACCAACAG-GGATTG-CCTCAGTAACGGCGAGTGAAGCGGCAAA-AGCTCAAATTT-GAAATCTGG-CG-CTTCCGGTG-TCCGAGTTGTAATTTGGAGAGGCATCTTCTGGG--GGGACCCGGCCTATCTTCCTTGGAACAGGAGGTCACAGAGGGTGAGAATCCCGTCCTTGG-CTGGATGTTCCCC-CCTGTACGTA-GTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTGGAGACCAGACTCGGCCCCGGATGAACAAGC---CGCCTTCTGGCGGT------------------TGCACTTGTCCTGGG-CCGGGCCAGCATCAGTTGGGGCGGTGGGATAAAGGCGCGCGGAATGTGGCTCCCCTCGGGG-AGTGTT-ATAGCCGCGGG----TGCAATGCCGCCTGCCCCGACTGTGGACCGCGC-TTTGGCTAGGATGCTGG-CGTAATGGTTTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCCTCAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCC----------CGCGAGGGACGCACCATCGA-CCGATCCTGATGTCTTCGGATGGATTT-GAGTAGGAGCATAGCTGTTGGG-ACCCGAAAGATGGTGAACTATGCCTG-AATAG??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Fig3b_Tuberaceae_LSU) = N: 1-972; CODONPOSSET CodonPositions (CHARACTERS = Fig3b_Tuberaceae_LSU) = N: 1-972; END; [ The following blocks are output data for analysis step 10277 ] BEGIN TREES; TITLE Fig3b_Tuberaceae_LSU; LINK TAXA = TaxaForAnalysisStep10277; TREE Fig._3b = [&R] ((((Helvella_lacunosa_MES218:0.01583168,Helvella_lacunosa_MES286:0.01117021):0.02304892,Helvella_macropus_MES198:0.01694426):0.04298297,((Balsamia_MES84:3.3E-7,Balsamia_SRC868:0.0013742):0.01118363,Balsamia_SRC395:0.01266107):0.06258721):0.0157139,(Underwoodia_columnaris_U42685:0.09194164,((((Underwoodia_singeri_mes161_Chile:1.0E-8,Underwoodia_singeri_JT26159:1.0E-8):0.03438412,P5M4_5a_EcM_Nothofagus_obliqua_Argentina:0.02590259):0.0039457,(((Underwoodia_beatonii_JT28375_Australia:0.00277975,Underwoodia_beatonii_JT28380_Australia:1.0E-8):0.00870382,Gymnohydnotrya_echinulata_clar4529:0.01374655):0.01810064,(Gymnohydnotrya_australiana_JT19760:1.0E-8,Gymnohydnotrya_australiana_OSC130601:0.00137223):0.01669192):0.00596502):0.01120393,((((((((((((((((((R8M8_7x_EcM_Nothofagus_alpina_Argentina:1.0E-8,L_C02_EcM_Salix_humboldtiana_Argentina:1.0E-8):0.01811463,((((Tuber_bellisporum_JT7270_Oregon_paratype:0.00634398,Tuber_bellisporum_JT11679_Oregon_holotype:1.0E-8):0.00852718,(Tuber_gibbosum_JT26632_Washington:0.00137572,Tuber_gibbosum_JT30580_Oregon:0.00137387):0.00636059):0.00238423,(Tuber_oregonense_GB284_Oregon_holotype:1.0E-8,Tuber_oregonense_JT30493_Oregon_paratype:1.0E-8):0.02948302):0.00275597,(Tuber_castellanoi_JT19924_California_paratype:1.0E-8,Tuber_castellanoi_JT28069_California_holotype:1.0E-8):0.00421474):0.04539143):0.0128592,L_C04_EcM_Salix_humboldtiana_Argentina:0.00419604):0.0090202,(Tuber_borchii_GB1_Italy:1.0E-8,Tuber_borchii_GB14_Italy:1.0E-8):0.01049447):0.00319298,(Tuber_dryophilum_GB35_Italy:1.0E-8,Tuber_dryophilum_GB37_Italy:1.0E-8):0.02110402):0.00273705,Tuber_cf_borchii_China:0.00847834):0.00170317,(Tuber_anniae_JT13209_Washington_holotype:0.00413013,Tuber_anniae_JT22695_Oregon:1.0E-8):0.01090393):0.00404506,Tuber_sp14_K186_Japan:0.01423132):0.00774976,Tuber_sphaerosporum_JT19772_Oregon:0.01302035):0.00420385,Tuber_asa_M1828_Italy:0.02968647):0.00954606,((Tuber_beyeleri_JT32597_Oregon:0.02225741,((Tuber_sancarloensis_ITCV885_Mexico:0.00510155,Tuber_sancarloensis_ITCV181_Mexico_holotype:0.01823447):0.01437752,Tuber_JT9769_Nepal:0.01806447):0.01121138):0.02028957,(Tuber_californicum_JT28058_California:0.01584808,(Tuber_sp_JT8755_Florida:0.01127077,Tuber_shearii_JT12498_North_Carolina:0.01213729):0.01307119):0.00852176):0.01103535):0.01377448,(Tuber_sp9_K214_Japan:0.01042268,(Tuber_sp8_K228_Japan:1.0E-8,Tuber_sp_JT28121_Japan:0.00188437):0.02759972):0.01564453):0.00819688,Tuber_multimaculatum_OSC62169_Spain_paratype:0.04243304):0.00725301,((((((Tuber_brumale_GB22_Italy:1.0E-8,Tuber_brumale_GB21_Italy:0.00137066):0.03446696,Tuber_pseudoexcavatum_CJ408_China:0.04170264):0.00697793,(((((Tuber_indicum_B_GB339_China:1.0E-8,Tuber_indicum_B_GB237_China:1.0E-8):0.00137136,Tuber_indicum_B_JT29410_Oregon:1.0E-8):0.00737121,(Tuber_indicum_A_GB240_China:0.00137144,Tuber_indicum_A_GB236_China:1.0E-8):0.00644505):0.00317822,Tuber_melanosporum_GB200_Italy:0.01482761):0.00303,Tuber_regimontanum_ITCV909_Mexico_holotype:0.01214004):0.01582146):0.01991638,Tuber_sp_RH73_Iowa:0.03620675):0.01412404,Tuber_spinoreticulatum_U188_Maryland_isotype:0.04013016):0.01166491,(((Tuber_lyonii_OSC58244_Texas:0.0094089,Tuber_sp_ITCV908_Mexico:0.00737457):0.00308558,Tuber_lyonii_GA21_Georgia:0.00712478):0.0119329,((((Tuber_nitidum_BM105_Spain:0.01797227,Tuber_malacodermum_JT32319_Spain:0.02703361):0.00507237,Tuber_rufum_GB213_Italy:0.01626687):0.00210548,(Tuber_sp_TB10248_New_York:0.02000854,Tuber_sp_ITCV910_Mexico:0.0421675):0.00957471):0.0025127,((Tuber_sp_JT13224_West_Virginia:0.02232967,Tuber_ferrugineum_MA2721_Italy:0.00228936):0.00339856,Tuber_liaotongense_OSC87602_China:0.02359558):0.00914093):0.00915272):0.01772551):0.01038166):0.01366128,(((Tuber_fulgens_M2435_Italy:0.01733479,Tuber_excavatum_BM100_Spain:0.02332585):0.00559878,Tuber_excavatum_OSC80639_Italy:0.01244822):0.01900142,(((Tuber_gennadii_BM667_Spain:1.0E-8,Tuber_gennadii_JT9627_Spain_paratype:0.00549714):0.01459854,Tuber_gennadii_M1904_Italy:0.03616159):0.0277319,(Tuber_magnatum_GB12_Italy:1.0E-8,Tuber_magnatum_GB13_Italy:1.0E-8):0.07821036):0.01452359):0.00948504):0.0026012,((((Tuber_canaliculatum_OSC59072_West_Virginia:0.00649485,Tuber_canaliculatum_JT28215_New_Jersey:0.00691492):0.00777942,Tuber_sp2_K215_Japan:0.01835119):0.00247543,Tuber_macrosporum_JT13362_Italy:0.01050317):0.01030516,Tuber_sp1_K201_Japan:0.02273774):0.02449741):0.00963921,(((Tuber_aestivum_JT30500_Sweden:1.0E-8,Tuber_aestivum_OSC61974_Serbia:1.0E-8,Tuber_aestivum_GB202_Italy:0.00546083):0.0084408,Tuber_mesentericum_CW105_Sweden:0.03547817):0.00539189,(Tuber_panniferum_JT4969_France:0.00890855,Tuber_panniferum_JT12835_Spain:0.00515359):0.04172271):0.03410812):0.01171558,((((Nothojafnia_cf_thaxterii_N10_Argentina:0.02065565,(Reddellomyces_JT6873_Australia:0.01183324,Reddellomyces_JT27724_Australia:0.01036672):0.00911321):0.00328889,(Labyrinthomyces_JT27750_Australia:0.00413779,Reddellomyces_JT27723_Australia:0.00552724):0.00511467):0.00555216,((Leppia_holotype_Australia:0.00195014,Dingleya_JT31575_Australia:0.00189152):0.00776014,Leppia_JT28813_Australia:1.0E-8):0.01242079):0.01664349,(Choiromyces_alveolatus_97:0.03593561,(Choiromyces_meandriformis_DL_Oregon:0.00137413,Choiromyces_meandriformis_RH691_Iowa:0.00137413):0.01209341):0.00936748):0.00497904):0.01625583):0.02803224):0.00392847):0.0; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr57975] END;