#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 13, 2026; 23:30 GMT TreeBASE (cc) 1994-2008 Study reference: Bonito G.M. 2010. A global meta-analysis of Tuber ITS rDNA sequences: species diversity, host associations and long-distance dispersal. Molecular Ecology, 19(22): 4994-5008. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13538] [ The following blocks are input data for analysis step 10281 ] BEGIN TAXA; TITLE TaxaForAnalysisStep10281; DIMENSIONS NTAX=93; TAXLABELS Choiromyces_alveolatus_97 Choiromyces_alveolatus_HS2886 Choiromyces_meandriformis_DL_Oregon Choiromyces_meandriformis_RH691_Iowa Dingleya_sp_JT31575_Australia Labyrinthomyces_sp_JT27750_Australia Reddellomyces_sp_JT27724_Australia Reddellomyces_sp_JT6873_Australia Tuber_aestivum_JT30500_Sweden Tuber_anniae_JT13209_Washington_holotype Tuber_anniae_JT22695_Oregon Tuber_asa_M1828_Italy Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype Tuber_beyeleri_JT32597_Oregon Tuber_borchii_GB1_Italy Tuber_borchii_GB14_Italy Tuber_brumale_GB21_Italy Tuber_brumale_GB22_Italy Tuber_californicum_JT28058_California Tuber_canaliculatum_JT28215_New_Jersey Tuber_canaliculatum_OSC59072_West_Virginia Tuber_candidum_AY830856_Oregon Tuber_castellanoi_nom_prov_JT19924_California_paratype Tuber_castellanoi_nom_prov_JT28069_California_holotype Tuber_cf_borchii_China Tuber_dryophilum_GB35_Italy Tuber_dryophilum_GB37_Italy Tuber_excavatum_BM100_Spain Tuber_excavatum_OSC80639_Italy Tuber_ferrugineum_MA2721_Italy Tuber_foetidum_AJ557544_Hungary Tuber_formosanum_FJ176917 Tuber_fulgens_M2435_Italy Tuber_furfuraceum_FJ176920 Tuber_gennadii_BM667_Spain Tuber_gennadii_JT9627_Spain_paratype Tuber_gennadii_M1904_Italy Tuber_gibbosum_JT26632_Washington Tuber_gibbosum_JT30580_Oregon Tuber_huidongense_DQ478632_China Tuber_indicum_A_GB236_China Tuber_indicum_A_GB240_China Tuber_indicum_B_GB237_China Tuber_indicum_B_JT29410_Oregon Tuber_latisporum_DQ898185_China Tuber_lauryi_nom_prov_JT26987_Oregon Tuber_liaotongense_DQ478645_China Tuber_liui_DQ898182_China Tuber_luomai_JT6003_Oregon_Holotype Tuber_lyonii_GA21_Georgia Tuber_lyonii_OSC58244_Texas Tuber_macrosporum_JT13362_Italy Tuber_maculatum_AM406673 Tuber_magnatum_JT19460_Italy Tuber_malacodermum_JT32319_Spain Tuber_melanosporum_GB200_Italy Tuber_menseri_nom_prov_JT11661_Oregon Tuber_mesentericum_CW105_Sweden Tuber_multimaculatum_OSC62169_Spain_paratype Tuber_nitidum_BM105_Spain Tuber_oregonense_nom_prov_GB284_Oregon_holotype Tuber_oregonense_nom_prov_JT27985_Oregon_paratype Tuber_pacificum_EU837241_Oregon Tuber_panniferum_JT12835_Spain Tuber_pseudoexcavatum_CJ408_China Tuber_puberulum_AJ969625_Hungary Tuber_quercicola_AY918957_Oregon Tuber_rapaeodorum_AJ557522_Hungary Tuber_regimontanum_ITCV909_Mexico_holotype Tuber_rufum_GB213_Italy Tuber_sancarloensis_ITCV181_Mexico_holotype Tuber_sancarloensis_nom_prov_ITCV885_Mexico Tuber_separans_JT7697_Oregon Tuber_shearii_JT12498_North_Carolina Tuber_shearii_OSC51052_North_Carolina Tuber_sp_JT28121_Japan Tuber_sp_RH73_Iowa Tuber_sp._ex._Angiosperm_Italy_AJ879679 Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687 Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304 Tuber_sp._ex._Epipactis_microphylla_France_AY286191 Tuber_sp._ex._Epipactis_microphylla_France_AY286194 Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885 Tuber_sp3_DQ478624_China Tuber_sp4_DQ478627_China Tuber_sphaerosporum_JT12487_Oregon Tuber_sphaerosporum_JT19772_Oregon Tuber_spinoreticulatum_U188_Maryland_isotype Tuber_taiyuanense_DQ478637_China Tuber_texense_JT15162_Texas Tuber_whetstonense_JT25783_Oregon_Paratype Tuber_zhongdianense_DQ898186_China ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14824] TITLE Fig1_ITS_GuideTree; LINK TAXA = TaxaForAnalysisStep10281; DIMENSIONS NCHAR=1239; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Choiromyces_alveolatus_97 -----------------------------------------------------------------------------------------------------------------------------------GC?---------GGCGGTCCCG?-AGACGGGA-------------CGCCTGACCGTGTTATCA---GAAACCCCACCGCGTACCGCTCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAGCCCTTTGCCTGCCCGGC----------------------------------ACGCCGGAGGCGC-C-TGGGGG-----AGGGCC----------CACTCCAAT----------CTCGCTTTGTCCA-GCGG-AAGAGAAGTCTGAC-TTGG----CC-ACAGTGCCATCAGTATT------AACGTACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCTC-GTCACTTC--C----AC-TGTGGTGTTGGCGGCAGTGGTCACCAGC-----ACGGA-GG-------------ATCTTCTCCCCGTCTGCCCACTCC-GCCGAAATAAAT-CAGGCGGACAAACTGA--TCTCAGCG--ACTGACTTAGTAAAA-----------------TCAATCAGCCAGGA-GTGAGGTTACGTC----CAGCCCAGCTTC---GGA-CCCC-------CATCC----GTTGCCACGCAGAC---CATG-GGTTGGCCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Choiromyces_alveolatus_HS2886 -------------------------------------------------------------------------------------------------------------------------------------G---------CGGTCCCGTAG-ACGGGA---------------CGCCTGACCGTGTTATCA---GAAACCCCACCGCGTACCGCTCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAGCCCTTTGCCTGCCCGGC----------------------------------ACGCCGGAGGCGC-C-TGGGGG-----AGGGCC----------CACTCCAAT----------CTCGCTTTGTCCA-GCGG-AAGAGAAGTCTGAC-TTGG----CC-ACAGTGCCATCAGTATT------AACGTACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCTC-GTCACTTC--C----AC-TGTGGTGTTGGCGGCAGTGGTCACCAGC-----ACGGA-GG-------------ATCTTCTCCCCGTCTGCCCACTCC-GCCGAAATAAAT-CAGGCGGACAAACTGA--TCTCAGCG--ACTGACTTAGTAAAA-----------------TCAATCAGCCAGGA-GTGAGGTTACGTC----CAGCCCAGCTTC---GGA-CCCC-------CATCC----GTTGCCACGCAGAC---CATG-GGTTGGCCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Choiromyces_meandriformis_DL_Oregon -----------------------------------------------------------------TAA-AAGTCGT-AACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAC----ACCATCTCCGGCG---------GGCGTCCCCGC-GAGGGGT--------------CGCCCAACGG------TATCAAGAAACCCCCCGTGTACCTCTCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGCAGCCGTCGCCTGCCCGGCC-CACGCCCC---ATCCGG----------GGCGTGTGGCCGGAGGTGC-C-CGGGGG-----AGGACC----------AACCCCAAC----------CTCCAACCATCCA-GTGG-AAGAGAAGTCTGAC-CGGG----CC-AC-GTGCCATCTGTATT------AACAAACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AAACCC-CTCACTTCTGT----AT-AGTGGTGTTGGCGGAAGTGGT-----GCCCGCGCTGGG-GT--------------TCGTCTCCCCCGCCGCCCACTCC-GCCGAAATGCAT-CGGGCGGACAAACTGA--TCTCAGCA--ACTGACTTAGTAAAA-----------------TCAATCAGCCAGGA-GTTAGGTTACGTTACGCCTTGCCGGCCAGCTTGGA-CCCC-------CATCC----AACTTGGTACAAAT---CATG-GGCTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Choiromyces_meandriformis_RH691_Iowa ---------------------------------------------------------------------------------------------------------------CATTAC----ACGATCTCCGGTG---------GGCGTCCCCGG-AAGGGGT--------------CGTCCAACGG------TATCAAGCAATCCCCTGCGTACCTCTCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGCAGCCGTCGCCTGCCCAGCC-CATGCCCC---ATCCGG----------GGTGTGTGGCCGGAGGTGC-C-CGGGGG-----AGGACC----------AACCCCAAC----------CTCCAACCATCCA-GTGG-AAGAGAAGTCTGAC-CGGG----CC-AT-GTGCCATCTGTATT------AACAAACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AAACCC-CTCACTTCTGT----AT-AGTGGTGTTGGCGGAAGTGGT-----GCCCGCGCTGGG-GA--------------TCGTGTCCCCGGTGGCCCACTCC-ACCGAAATGCAT-TGGGCAGACAAACTGA--TCTCAGCA--ACTGACTTAGCAAAA-----------------TCAATCAGTCAGGA-GTTAGGTTATGT-----CTTGCCAGCCGGCTTGGA-CCCC-------CATCC----AACTTGGTACAAAT---CATG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Dingleya_sp_JT31575_Australia ---------------------------------------------------------------------------------------------------------------CATTAG-----AAAGCTTATACGT--------AGAGGCTGCCG-GAGAGGGGGGGCTCGAATCCCCTTCCCCGGTGGGGCTACAATAAACCCAAACCGCGTACCTGACCATGTTGCTTCCCCGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCCAGGGCGACCTGCC-----------------------------------------------GTGGAC-C-GGGAGA-----AGGGCCGGAATGCATTTCCTGAAAG--------CACCCCAACCAGCAT-GTGG-ATGAGATGTCTGACGCTGG----CCTTTTGCGCCACCGGTTTTG-TTTTAACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTG-GGGCATGCCTGCTCGAGCGTCACATAA--AAACCCCCTCACAAGCAT-----T-TGTGGTGCTGGCGGATGTGGCCACCCCCAGTTTTGGGG-GC--------------GCC--------------CACACC-GCTGAAATGGAT-CAGGCGGACGCAACCCCCTCTCGCCA--ACTGGCTTAGTAAAATC---GACGTGAA---GTCAACCAGCCAGGA-GTAAGGGAGACGT----CTCGCCCGCAGTGAAGGACCCCG-------CATCC----ACGGAGATGAGAAG--CCTTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Labyrinthomyces_sp_JT27750_Australia ---------------------------------------------------------------------------------------------------------------CATTAA-AGAAAGATTTAACCTGT--------AGATGCTGC----AGGAGAGGGGGGGTCAGATCCCCCTTTCCCAGCGGGCTACGAAACCCAAACCGCGTACCTGACCATGTTGCTTCCCCGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCAGGGCGACCTGCCCGGTGC-TGGGCCCC---CCATAGCAG-----GGGGACGCGCCGGCCATGGGC-C-GGGAGA-----AGGGCCGGAATGTAC-TTTCCTGAAAAGAAGAACCCCCCAACCAGCCC-GAAG-ATGTGGAGTCTGACGCCGG----CC-TTCGTGCCGTCGGTTTAGTTTTTAACACACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTG-GGGCATGCCTGCTCGAGCGTCACATAA--AAGCCCCCTCACAAGCAT-----T-TGTGGTGCTGGCGATTGTGGCCGTCCCCCCTCGCCGGG-GG-----------------GGGCC---------CACTCC-GCTGAAATGGAT-CAGGCGGACGCAA-CCCTTCTCGCCC--ACTGGCTTAGTAAAACC---GACGTCAA---GTCGACCAGCCAGGA-GTTTGGTGGCG-T----CTTGCCCGCAACGAAGGACCCCC-------CCTCCTCCATGGAGTTGAGAAAC---CTTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Reddellomyces_sp_JT27724_Australia ---------------------------------------------------------------------------------------------------------------CATTAA-----GAAAGTAATCCGT--------AGGCATCGCCT-GGAGAGGGGAGGTCATAAAT-CCCCTTTCCCGGTGCTCTACCAAACCCAAACCGTGTACCAAACCATGTTGCTTCCCCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCAGGGAGACCTGCCCGGCAT-TGG-CCCC---CCGGCTTTGGCC--GAGGGCCTGCCCGCTGTGGGC-T-GGGAGA-----AGGGCCTGAACGAGTATGTTCTGAAACCCGTCACCCC--AAACACCCT-GAAG-AGGAGAAGTCTGACCATGG----CG-TTTGCGCCAACCGTTTTG-TTACAACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTG-GGGCATGCCTGCTCGAGCGTCACATAGTAAAACCCCCTCACAAGAGT-----T-TGTGGTGGTGACGGATGTGGCTTCGCCCCCTGACTTTG-GG-----------------GGGCCC--------CACACC-GTTGAAATGGAT-CCGGCGGACGCAACCCCCCCTCGACCAAACTGGCTTAGT--AATGCTCGACGTCAA---GTCGACCAGCCAGGA-GCGGTGTCGACGT----CCTGCCCGCAACAATGGACCCCCCC-----CATCC----ATGGCGATGAGGAA-ACCTAG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Reddellomyces_sp_JT6873_Australia ---------------------------------------------------------------------------------------------------------------CATTAA-----GAAAGTAATCCGT--------AGATATCGCCT-GGAGAGGGGACGTCAAAATC-CCCTTTCCCCGGTGCTCTACCAAACCCAAACTGTGTACCAAACCATGTTGCTTCCCCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCGGGGTGACCTGCCCGGCAT-TGGTCCCC---CCCGCTTTGACCGAGAGGGCCTGCCGGCTGTGGGC-T-GGGAGA-----AGGGCCTGAACGAGTGTGTTCTAAAAACCCTCCCCCA--AAACAGCCT-GAAG-AGGAGAAGTCTGACCATGG----CC-TTTGCGCCAACCGTTTTG-TTACAACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTG-GGGCATGCCTGCTCGAGCGTCACATAGAAAAACCCCCTCACGAGCAT-----T-TGTGGTGCTGACGGATGTGGCTCGCCCCCCCGACCTGG-GG-----------------GAGCCC--------CACACC-GTTGAAATGGAT-CCGGCGGACGCAA-CCCTCCTCGCCCAAACTGGCTTAGT--AATGCTCGATACCTA---GTCGACCAGCCAGGA-GTAGGGTTGACGT----CTCGCCCGCAACAATGGACCCCCTCCGTC-CGTCA----------GGATGAGGAACCTAG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_aestivum_JT30500_Sweden --------------------------------------------------------------------------------GGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAA----A----CAAGCCGGGT--------GACGCCCGTG-GGGCGGCCA------------CCCAGAGCACCA----------AACCACAGCTGCGTACAATGCCATGTTGCTTCCCCGGGCCAGCGGCCGTCGCCGCCCGTCGGCGAGACACAGGCGTGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCCG-CGCGGAGGCGC-C-CGGGGGT----G-GGGCTCCCGC----CCCTCGAAACTA-------AGACGTCGGGA---GCGT-GGACTGTGTCTGACCTGGGC--CAC-ATTGGGCCGCCGAAAACT-TG---ACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCA-GGGCATGCCTGTCCGAGCGTCAGTGCA--AACCAC-CTCACGGA-AC-----A-CGTGGTGCTGGCGGAGGTGGTG-----------TCGGA-TCGGGCCGCGATGGCGGCCCGGTCCTCCC----CACCCC-GCCGAAATGTAT-GGGGAGCAACACG-CAT-TGGCGGAC---CCGACTTGGTAGACGCTGTGGTTAGCG---TGGAGC-AGTCGCGGGGCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_anniae_JT13209_Washington_holotype -------------------------------------------------------------------A-GTCGTAA-CAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAC-----A---AATGTCTG---------GGATGTCCA----ATCGGG--------------CCCCCAAGC-------A----AACACATCCATGTGTACACTCCCATGTTGCTTTCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTGG--CCACTGCTGCCAGCC-CAACCCCT---TGAT-T---------GGGGTCCTGGGTTGAGGTGT-C-TGGGGA-----AGGGCCC---------AATAAC-AA----------AC--CTTTG---A-ACCA-ATTAGTTGTCTGAG-TAGG----CC-AC-CTGCCGCAA-TCTT--T-AAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-CTCACAGA--T----AA-TGTGGTATTGGTAGAAGTGA-------------ACGGT-AC-T-TAC-----ATTACCTTGTCT--------CACTCT-GCTGAAATGAAT-TGGCCAGAGAAGT-GGACCCATGGTA--ATTGACTCCAG-GAGTGTT-TTTCAATG---CTAAACTAGTCTTTA-CCCAAGTCAAGTT----CTG---AGCTAC--CGGACCCCC-------CATTA----A-----GTCCAAAA-CAGAGT-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_anniae_JT22695_Oregon -------------------------------------------------------------------------------------------------------GGAAGGATCATTAC-----A---AATGTCTG---------GGATGTCCA----ATCGGG--------------CCCCCAAGC-------A----AACACATCCATGTGTACACTCCCATGTTGCTTTCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTGG--CCACTGCTGCCAGCC-CAACCCCT---TGAT-T---------GGGGTCCTGGGTTGAGGTGT-C-TGGGGA-----AGGGCCC---------AATAAC-AA----------AC--CATTG---A-ACCA-ATTAGTTGTCTGAG-TAGG----CC-AC-CTGCCGCAA-TCTT--T-AAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-CTCACAGA--T----AA-TGTGGTATTGGTAGAAGTGA-------------ACGGT-AC-T-TAC-----ATTACCTTGTCT--------CACTCT-GCTGAAATGAAT-TGGCCAGAGAAGT-GGACCCATGGTA--ATTGACTCCAG-GAGTGTT-TTTCAATG---CTAAACTAGTCTTTA-CCCAAGTCAAGTT----CTG---AGCTAC--CGGACCCCC-------CATTA----A-----GTCCAAAA-CAGAGT-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_asa_M1828_Italy ----------------------------------------------------------GAAGTAAAA?-GTCGTAA-CAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAC-----A---AATATCTG---------GGATGTTCA----ACTGGA--------------CTCCCAAGT-------A----AACACATTCATGTGTACCCTTCCATGTTGCTTCCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGG--CCATTGCCACCAGTC-AAGTCCCT---AATT-A---------AGGCTCCTGGGCTGAGGTGT-C-TGGGGA-----AGGACCC---------ATTATC-AA----------AC--CTTTA---A-ACAA-ATTAGTTGTCTGAG-ACGG----CC-AT-GTGCCGCAA-TCTT--T-AAAATATATT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTAGGTATTCCTGA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCAT-CTCACAGA--T----AA-TGTGGTATTGGTAGAAGTGG-------------GTAGT-AC-TGGAT-----TGTACTTTATCC--------TACTCC-ACCGAAATCAAT-AGGTCAGAAATGT-GGA-CCATGGTA--ACAGACTCTCA-GAGTGTTATAAAAATA---CTATACTAGTCTTA--ACCTGGTTGGAAT----CTG---AGTCAC--TGGA-CCCC-------CCTTG----A-----GTCCAAACAAAGAGA-GGTTGACCTCG------------------------------------------------------------------------------------------------- Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype -------------------------------------------------------------------------------------------------------------------------------------G---------GGATGC?CTTT-A-----------------------------------------A?GGC?TCCCTTAGTA--AACCAATATTAAACCCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACAA-ACCCATAGTCTGAG-AAGG----CT-AT-GTGCCATAATTATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACTAGACCC-CTCACGTT--T----GA-CGTGGTATTGATGGAAGTGGG------------ATAGA-AA-----------------TTGCTT--------TACTCC-TTCAAAATTTAA-AGGCCGGAAAAAT-GA--TCTCGGTG--ACAGACTTGCA-GAGTGTT-GTGAAAAC---CTAAATTAGTCTTGA-GCCAGGTCTAG-T----CCG---TGCTTC--TGGA-CCCC-------CATCC----A-----ATGTAAAC----------------------------------------------------T-ATTAGA-------------------------------------------------------- Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype -------------------------------------------------------------------------------------------------------------------------------------------------ATGCCTT---------------------------------------------TAAGGCTCCCTTAGTA--AACCAATATTAAACCCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACAA-ACCCATAGTCTGAG-AAGG----CT-AT-GTGCCATAATTATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACTAGACCC-CTCACGTT--T----GA-CGTGGTATTGATGGAAGTGGG------------ACAGA-AA-----------------TTGCTT--------TACTCC-TTCAAAATTTAA-AGGCCGGAAAAAT-GA--TCTCGGTG--ACAGACTTGCA-GAGTGTT-GTGAAAAC---CTAAATTAGTCTTGA-GCCAGGTCTAG-T----CCG---TGCTTC--TGGA-CCCC-------CATCC----A-----ATGTAAAC----------------------------------------------------T-ATTAGA-------------------------------------------------------- Tuber_beyeleri_JT32597_Oregon ---------------------------------------------------------------------------------------------------------------CATTAT------TATAATGCGTGG--------AAATGCCCCTA-ACAAGGG------------------------------------------CTCTCTATAAAACTCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-ACTTACTGTCTGAG-AAGG----CC-AT-GTGCCGTAATCTTT-----AAACATTTT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCTC-ATCACAAA--G----AG-TGTGGTATTGGCAGAAGTGG-------------GTAGG-GC---CAGCAAGGAAGTGCTGGCCC--------CACTCT-GCTGGAATGAAT-AGGCCGGAAATGTAGA--CCATGGTA--ACAGACTTTCA-GAGTATC-GTCAAATG---CTAAATTAGTTTGTATGCTTGGTCAGAAT----CTA---GGCCAT--TGGA-CCCC-------CATTC----T-----GTATAAAG-CAGCAA-TGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_borchii_GB1_Italy ---------------------------------------------------------------------------------------------------------------CATTAC--------GAATGTATG---------GGATGCCCT----ATCGGA--------------CTCCCAAGCAA----------AACACATTCCTGTGTACTCTCCCTC?TTAAACTTTTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCA-ATTAGTAGTCTGAG-AAGG----CC-AT-GTGCCGTAAAATTT-----AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-CTCACAGA--T----AA-TGTGGTATTGGTAGAAGTGG-------------ATGGT-AC-------TAACACTACTTTGTCT--------GACTCT-ACTGAAATGAAT-AGGCCAGAGAAGTTGA--CCGTGGTA--ATAGACTCCAG-GAGTGTT-TTAAAATG---CTAAATTAGTCTTC--TCCAAGTCATGTT----CTG---AGCTAC--CGGACCCCC-------CATTT----A-----GTCCAAAC-TAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_borchii_GB14_Italy ---------------------------------------------------------------------------------------------------------------CATTAC----AA---AATGTATG---------GGATGCCCT----ATCGGA--------------CTCCCAAGCA------A----AACACATTCCTGTGTACTCTCCCTCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------AC--TTTTG---A-ACCA-ATTAGTAGTCTGAG-AAGG----CC-AT-GTGCTGTAA-AATT--T--AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-CTCACAGA--T----AA-TGTGGTATTGGTAGAAGTGG-------------ATGGT-AC-T-AAC-----ACTACTTTGTCT--------GACTCT-ACTGAAATGAAT-AGGCCAGAGAAGT-TGA-CCGTGGTA--ATAGACTCCAG-GAGTGTT-TTAAAATG---CTAAATTAGTCTTC--TCCAAGTCATGTT----CTG---AGCTAC--CGGACCCCC-------CATTT----A-----GTCCAAAC-TAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_brumale_GB21_Italy ---------------------------------------------------------------------------------------------------------------CATTAT----AA---ATA-TCTG---------GGA?TC-?G---------T--------------CCCTGATCTT------C----AA--TCTCTCTGTGTACCAATCCATGTTGCTTTCACAGGCTAAGTGATATTTCCTACTCGTCAGTGGTACACAATGTCAGAGCCAATCTAATGCTTTCCACTATTGCTATCTTGTACTACCTGACTCCAGTTGCTACACATTGCCGATATATCCTTCCTTTGATTATCTAAGCTATTG--------------------------------TACTTGCTATGGTATCGATCGTTAGACTGTATTGGTGTCTTGCTACAAATTGGACAGGTTGAC--AGGTAGTTGGTCATTACATTCTATTTGTTCTGTCA--TTAATACCGCAAACG-TTTAGCTA---TTATAT---------TGTTAGAGCTATGTAGGCTC-C-TGTGGA-----AGGT-CT---------TCACCTTAA----------CA--AATTG---T-ATGA-GTATGTAGTCTGAT-ATGG----CC-AA-GTGCCAGATTTATT--G--AGATATTTG-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATAGCGCCCTTTGGTATTCCTTA-GGGCATACCTGTTCGAGCGTCACTGCT--AACTTC-CTCACAAA--T----AT-TGTGGTCTTGGTTGCTGTAGA------------TTGTG-GG-TATATTTAGTACATATGCTCACGAGA----TACTCT-GCTAAAATTCAT-CAGGTGGATACCA-GG--TATAAATA--ACAGACTTTAT-AAATGTC-TACAGGAT---ATGAATTAGTTGTTT-AGTATAT-CTG-A----TAC---TGCTATCATGGA-TCCC-------CATCT----T-----GAATAAAT---TATG------------------------------------------------------------------------------------------------------------- Tuber_brumale_GB22_Italy -------------------ACTGCCAGGTGCAAAGTTGGTCAAACTTGGTCATTTA?AGGAAGTAAAA-GTCGTAA-CAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAT----AA---ATA-TCTG---------GGATTCAAG---------T--------------CCCTGATCTT------C----AA--TCTCTCTGTGTACCAATCCATGTTGCTTTCACAGGCTAAGTGATATTTCCTACTCGTCAGTGGTACACAATGTCAGAGCCAATCTAATGCTTTCCACTATTGCTATCTTGTACTACCTGACTCCAGTTGCTACACATTGCCGATATATCCTTCCTTTGATTATCTAAGCTATTGAA?ACTGCTGGCCAGCTGCCGGCTAGTAGTTCTACTTGCTATGGTATCGATCGTTAGACTGTATTGGTGTCTTGCTACAAATTGGACAGGTTGAC--AGGTAGTTGGTCATTACATTCTATTTGTTCTGTCA--TTAATACCGCAAACG-TTTAGCTA---TTATAT---------TGTTAGAGCTATGTAGGCTC-C-TGTGGA-----AGGT-CT---------TCACCTTAA----------CA--AATTG---T-ATGA-GTATGTAGTCTGAT-ATGG----CC-AA-GTGCCAGATTTATT--G--AGATATTTG-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATAGCGCCCTTTGGTATTCCTTA-?GGCATACCTGTTCGAGCGTCACTGCT--AACTTC-CTCACAAA--T----AT-TGTGGTCTTGGTTGCTGTA?A------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Tuber_californicum_JT28058_California ----------------------------------------------------------------------------------------------------------AGGATCATTAC-----A---AATGTCTG---------GGATGTCCA----ATTTGG--------------CTCCTAAGC-------A----AACACTTCTATGTGTACTCTCCCATGTTGCTTCCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGG--CCACTGCTGCCAGTC-CGGCCTCT---TAA--C---------GGGTTTCTGGTCTGAGATGT-C-TGGGGA-----AGGTC-C---------ATTATT-AA----------AC--TTTTA---A-ACCA-ATTGCCAGTCTGAG-AAGG----CC-AT-GTGCCGTAA-TCTT--T-AAAACATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATACCTGTTCGAGCGTCACTAAA--AACCAT-CTCATATA--T----AA-TGTGGTATTGGTAGAAGTGG-------------GTAGT-AT-T-AAT-----AGTACTTTGTCT--------TACTCT-ACTGAAATGCAT-AGGCCAGAAAAGT-GGA-CCATGGTA--ACAGACTCTCA-GAGTGTT-TTAAAATG---CTAAATTAGTCTTA--CCACAGTTGATAT----CTG---AGCTAC--CGGA-TCCC-------CATTT----A-----GTCCAAAC-CAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_canaliculatum_JT28215_New_Jersey ---------------------------------------------------------------------------------------------------------------CATTAG------AGAGATATCAG---------GGAGGCCCA---------------------------------------------TCCGGTTCCCCGAGCAAACAATCCCAACGCGTTGCCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGCAGTCTGAG-CAGG----CC-AC-CAGCCTGAAACAAC-----CAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCA-GGGCATGCCTGTTCGAGCGTCAATAGA--AACCCCCCTCACCCT-------CC-TGG?GG???GGGGGAGGTGG-------------GT?G?-??-------TCCCGGCGCCTGGCC---------CACCCC-CCCGAAACGCAT-GGGCCCGAGAGAC-GAC-TGGCTGCG--ACTGACATTCT-AAGCGCT-TTGCAGGC---CTGAACCGGTCCGCA-GTCACGTCGAG------------------------------------CGGTG-------------------------------------------------------------------------------------------------------------------------------------- Tuber_canaliculatum_OSC59072_West_Virginia ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCAA-CAATCCCAACGCGTTGCC?AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGCAGTCTGAG-CAGG----CC-AC-CAGCCTGAAACAAC-----CAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCA-GGGCATGCCTGTTCGAGCGTCAATAGA--AACCCCCCTCACCCT-------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_candidum_AY830856_Oregon ---------------------------------------------------------------------------------------------------------------CATTAC---------ACATATATG--------GGACACTAATGT-----------------G-GTCCCTTGACTA-----------AAACCCTCTCTGCGTACCAATCTATGTTGCTTTCCTAGGTGGTTGGTTTCAGCTGCCGTCCAACATTGCCTGCTAGCTCAGTCAATCCGAGTTGTTAACTTGGAGTTTGATCTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACTGATGGGTTA--AGCTTTAATGGGTCAGCGAGCT-TAATTTATATCTATCAGGATCAGCTATGTAGGCCC-C-TGGGAA-----AGGGTCCA--------T{CT}GCAAGTG------------------AATAT-TTCA-ATCAGCTGTCTGAG-TCGG----CC-TA-GTGCCTTATTCTTT-----AAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACA--AACCCG-CTCATAAA--TG----T-TATGGTATTGATGGAAGTGAA------------CTGTT-GCAAC-------TAA-AGTGTG--TGGAT----CACCCC-ATCGAAATACAT-AGGCAGGACAACA-AA--CCTCTGTAG--CTGACTTAGT-AACTGTT-TTCAAGAC---ACAAACCAGTCACTT-GCTAGGTTCTAGC----CTG----GCCTCATTAGA-CCTC-------CATTC----A-----AGATAAATA---CTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCA----------------------------------------------------------------- Tuber_castellanoi_nom_prov_JT19924_California_paratype ---------------------------------------------------------------------------------------CCGTAGGTGAACCTGCGGAAGGATCATTAC--------ATATGCCTG---------GGATGCCTT---------------------------------------------TAAGGTTCCCTGAGTA--AACCCATATTTAAACCCTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACAA-ACTTGTAGTCTGAG-AAGA----CT-AT-GTGATGTAATTATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACCAGACCC-TTCACGTT--T----AA-CGTGGTATTGATGGAAGTGGG------------GCAGA-AA-----------------TTGCTC--------TACTCC-TTCAAAATTGAA-AGGCCGGAAAAAT-GA--TCTCGGTG--ACAGACTTGCA-GAGTGTT-GTGAAAAC---CTAAATTAGTCTTGA-GCGAGGTCGAG-T----CCG---TGCTTC--TGGA-CCCC-------CATCC----A-----ATGTAAAC----------------------------------------------------T-ATTAGA-------------------------------------------------------- Tuber_castellanoi_nom_prov_JT28069_California_holotype -------------------------------------------TCTTGGTCATTTAGAGGAAGTAAAA-GTCGTAA-CAAGGTTTTCCCGTAGGTGAACCTGCGGAAGGATCATTAC--------ATATGCCTG---------GGATGCCTT---------------------------------------------TAAGGTTCCCTGAGTA--AACCCATATTTAATCCCTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACAA-ACTTGTAGTCTGAG-AAGA----CT-AT-GTGATGTAATTATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACCAGACCC-TTCACGTT--T----AA-CGTGGTATTGATGGAAGTGGG------------GCAGA-AA-----------------TTGCTC--------TACTCC-TTCAAAATTGAA-AGGCCGGAAAAAT-GA--TCTCGGTG--ACAGACTTGCA-GAGTGTT-GTGAAAAC---CTAAATTAGTCTTGA-GCGAGGTCGAGTC----CCG---TGCTTC--TGGA-CCCC-------CATCC----A-----ATGTAAAC-TATTAG-AGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_cf_borchii_China ---------------------------------------------------------------------------------------------------------------CATTAC----TAAACAATGTGCG---------GGATATCCC----ACCGGGGA------------CTCCTTAGCA------A----AACACATCCATGAGTACCCTCCCATGTTGCTTCCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGG--CCACTGCTGCCAGCT-CTGTCCTC---TAATAC---------AGGATCGTGGGTTGAGGTGT-C-TGGGGA-----AGGGCCA---------ACTGTCAAA----------AC--TTTTG---A-ACCA-ATTTGTTGTCTGAG-AAGG----CC-AT-ATGCCGCAA-TATT--TAAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-CTCACAGA--T----AA-TGTGGTATTGGTAGAAGTGG-------------GTAGT-AC-T-AAC-----AGTGCTTTGTCC--------CACTCT-ACCAAAATTAAT-AGGCCAGAAAAGT-GAA-CTTGGGTA--ACAGACTCTCA-GAGTGTT-TTAAAATG---CTAAACTAGTCTTA--TCCAGGTTGGAAT----CTG---AGCCAC--TGGA-CCCC-------CATTT----A-----GTCCAAAA-CAGAGA-G----------------------------------------------------------------------------------------------------------- Tuber_dryophilum_GB35_Italy ---------------------------------------------------------------------------------------------------------------CATTAC-----A---TATGTCCG---------GGATGTCCA----A?GGGG--------------CTCCCAAGC?------G----AACACATC?ATGTGTACACTCCCATGTTGCTTCCCCA?A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTGG--CCACTGCTGCCAGCC-CTGCCCTT---CA---T---------GGCATTTCGGGTTGAGGTGT-C-TGGGGA-----AGGGTCC---------AATATC-AA----------AC--TTTTG---A-ACAA-ATCAGTTGTCTGAG-AAGG----CC-AT-CCGCCGCAA-ATTT--TAAAAATATATTAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGTCTGTTCGAGCGTCACT-AA--AACCGC-CTCACATA--T----AA-TGTGGTATTGGTAGAAGTGG-------------GTAGT-GC-T-AAA-----AGCACCTTGTTC--------TACTCT-ACTGAAATGAAT-AGGCCAGAAAAGT-GAA-CCATGGTA--GTAGACTCTCA-GAGTGTT-TTAATATA---CTAAACTAGTCTTA--GCCAGGTTGGAAT----CTG---AGTTCC--TGGA-CCCC-------CATTT----A-----GTCTAAAT-AAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_dryophilum_GB37_Italy ---------------------------------------------------------------------------------------------------------------CATTAC-----A---TATGTCTG---------GGATGTCCA----ATGGGG--------------CTCCCAAGCA------A----AACACATCCATGTGTACACTCCCATGTTGCTTCCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTGG--CCACTGCTGCCAGCC-CTGCCCTT---CA---T---------GGCATTTCGGGTTGAGGTGT-C-TGGGGA-----AGGGTCC---------AATATC-AA----------AC--TTTTG---A-ACAA-ATCAGTTGTCTGAG-AAGG----CC-AT-CCGCCGCAA-ATTT--TTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACT-AA--AACCGC-CTCACATA--T----AA-TGTGGTATTGGTAGAAGTGG-------------GTAGT-GC-T-AAA-----AGCACCTTGTCC--------TACTCT-ACTGAAATGAAT-AGGCCAGAAAAGT-GAA-CCATGGTA--GTAGACTCTCA-GAGTGTT-TTAATATA---CTAAACTAGTCTTA--GCCAGGTTGGAAT----CTG---AGTTCC--CGGA-CCCC-------CATTT----A-----GTCTAAAT-AAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_excavatum_BM100_Spain ----------------------------------------------------------------------------------------C?TCTGTG--------------------------------------------------------------CGGT--------------TCCCGGGTTC------------?AACC-CTCCGAGTACCCATCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGCAG--TCCTTGCTGCCCGTC-T--CCCTC---CATGTC---------TGGTCGTGGGATGGAGGTGT-C-TGGGGA-----GGGGTCC---------AAA--CAGA--------------AACTCTTGT-GAAC-ACAGGCAGTCTGAG-CGGGC---CC-AT-GTGCCCTGT-GAAT--ATTGAACAAGTT-ATAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCTC-CTCACGCA--C----CC-CGTGGTATTGGTGGAAGCTAG------------CCGTG-GG-CCATCTCGGCTGCGGCGC------------TGCTCT-GCTGAAATGCAT-AAGCAGGACAACT-GGG-CCTCAGCG--AGTGACTTAGTAAAGTGTC-ATCAAGAC---CTAGAGCAGTCATCA-GCTATGGCTTG-C----CCTGCCCACCCGGACA---CTCC-------CATCC----G-----GCGTGAAC---CCTT-GGTTGACCTCGGATCAGGTAGGCATACCCGC----------------------------------------------------------------------------- Tuber_excavatum_OSC80639_Italy -------------------------------------------------------------------CATTAAAAA-GTATCGGGACCCCCATATC--------------------------------------------------------------CGGTC--------------CCCGAGCTCC-----------AAACCCCTCCGAGTACCCATCCATGTTGCTTTCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGC--CATTGCTGCCTGTC-TG----AC---CATGCCC---------GGTCACAGGACAGAGGTGC-C-TGGGGA-----GGGGCTC---------AAA--CAGA--------------AACTCTAGT-ACAC-ACAGGCTGTCTGAG-TGGGC----C-AT-GTGCCCTGC--AAG--ATTGAACGAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCTT-CTCACGGAT-C----CC--GTGGTAGTGGC?GAAGCTCCA-----------CTGTG-CC--CCTCTGGGCTGCGGTGCA------------GCTCC-GCTGAAATGCAT-AAGCAGGACAAGT-GGG-CCTCAGCG--AGTGACTTAGTAA-GTGTC-TTGAAGAC---GTAGAGCAGTCAGCA-GCTAGGCCATG-C----CCTGCCCACCAGGACTC--CTCCCC-----CATCT----G-----GTGTGAACT---CTT-GGTTGACCTCGGATCAGGTAGGCATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATT-GCCTCA-TA------------------- Tuber_ferrugineum_MA2721_Italy --------------------------------------------------------TTAGAGGAAGTAAAAGTCGT-AACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATTTG---------TTTATG--------GGACACAAA-------------------AGTGTTCTCTGATAC-----------AAACCCTCTCTGTGTACCAATCCATGTTGCTTTCCCAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTGGTTT--CAGTTGATGTCCAAT-CCTGCATG---C-TAGCTGAGTTAAT---ATCA-CTAAGCGGGTCC-C-TGGGAA-----AGGGCC----------TTACCAATG----------------CAAACAT-TTGA-ATCAGCCGTCTGAG-TTGG----CC-CA-GTGCCGCATTATTTG-----AATAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCA--AACCCG-CTCATAAA--T----AT-TATGGTAATGATGGAAGTGAAG------------TGAG-GAC----------AGTAATGTGCCTCGGT----CACCCC-ATTGAAATGTAT-TGGCAGGACAATT-AA--CCTCTGCA--ATGGACTTAGT-AACTGTT-TTGAAGAC---ATCAATCAGTCAATT-GCGAGGTTCTGGC----CTG----GCCCCGATGGA-TTTC-------CATCA----A-----AGATGAAC---TCTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG------------------------------------------------------- Tuber_foetidum_AJ557544_Hungary --------------------------------------------------------------------------------------------------------------TCAATATT-----TGGGGTGCTTGACACTGGC----TCCCAATA-AAACCCATCCATGAGTACTCTGC-----------------------------------------CATGTTGCTTCCCCAGGCCAGTGGCCACTGCTGCCAGCCAGGCCGTTATTCGGTCACTTGGTTGAGGTGCCTGGGGAAGGGCCAATTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTTTACATT---------------------------------------AA--CTTACTGTCTGAG-AAGG----CC-AT-GTGCCGTAATCTTT-----AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA---ACCAG-ATCACCAA--G----AG-TGTGGTATTGGCAGAAGTGG-------------GTGGG-AC-------TATAAGGGA---CCCTTC------CACTCT-GCTGGAATGAAT-AGGCTGGAAAAGTAGAT--CATAGCA--ACAGACTTTCA-GAGTATT-TTGAAATG---CTAAATTAGTTTGAA--GCTGATCGGAAC----CCAGGCCAT-----TAGA-CCCC-------CATCC----T-----GTGTAAAG-CAGTAA-GG---------------------------------------------------------------------------------------------------------- Tuber_formosanum_FJ176917 --------------------------------------------------------------------------------------------------------------------T----AA---ATACTTTG---------GGATACCAT----TGTGTA--------------TTCCTGAACA------C-----AAACCTCTCTGCGTATTACTCCATGTTGCTTCCACAGGTTAAGCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATGCTGGCAC-C-TGTGGG-----AGAT-CT---------TCACATTAA----------CA--GAGTA---C-TTGA-TTATGCAGTCTGAG-CTGG----CC-AT-GTGTCAGAT----T--T--ACTGAAGTA-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTACA--CACCTT-ATCACAAT--A----TT-TGTGGTCTTGGCAGGAGTGAA------------TTGCT-GG-T-------CTACGGAAGTATTCCAGCAGTACACAAT-GCTAAAAAATAT-GGGAAGGTTACCA-GA--TATGAACA--ACAGACTTTGT-AAATGGT-TGTAGGAC---CTAGATCAGTCACAA-GTCATGTCTGGTC----CCTTA---CCTT-AAGGA-CCCC-------CATCC----T-----AGATGAAC---TATG-G----------------------------------------------------------------------------------------------------------- Tuber_fulgens_M2435_Italy ------------------------------------------------------------------------GTAA-CAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAA----AA---AATGGTTG---------GGACCCCCCAC-ATAAGGT--------------CCCCGAGCCC------------AAACCTCCCTGAGTACCAATCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAG--CCATTGCTGCCCGTC-CGGCCGTT---CCTG------------GGTCACAGGACGGAGGTGC-C-TGGGGA-----GGGGTCC---------AAAAGCAGA--------------AACTCTGGT-GCAC-ACATGCTGTCTGAG-TTGGTGGGCC-AT-GTGCCCGGT-TA----ATTGAATTATTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAGC--AACCAT-CTCACGGA--T----CC-CGTGGTCTTGGTGGAAGCTTC------------CTGCG-GC-CCCT-TTGGCTGCAGCAA------------AGCTCC-GCTGAAATGTAT-AAGCAGGACAAAC-AGG-CCCCGGCG--AGTGACTTAGT-AAGTGTC-GTGAAGAC---GTAGACCAGTCAGCA-GCCAGGCCTTG-C----CCTGTTCACCCAGACACCCCCCC-------CATCT----G-----GTGTGATC---TCTT-GGTTGACCTCGGATCAGGTAGGCATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_furfuraceum_FJ176920 -------------------------------------------------------------------------------------------------------------------AT---------ATATACATT--------GGACACTATT-------------------GTGCTCCATGATCT-----------AAACTCCCTCTGTGTACCAATCCATGTTGCTTTCCCAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCGG---------------------------------G------TC----------------AT---C---TGGGAA-----AGGATC------------TCTTAAAAC--------------CGAATCAATTGA-ATCAGCTGTCTGAG-TTGG----CC-CA-GTGCCATATATGGTTT---AAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCA--AACCCA-CTCATAAA--T----AT-TGTGGTATTGATGGAAGTGAA------------CTGAG-TCA----------AACAATGTACTTGGGT----CACCCC-ATTGAAATGCAT-AGGCAGGACAATA-AA--CCTCTGCA--ATGAACTTAGT-AACTGTC-TGAAAGAC---ACAAACCAGTTTGTT-GTTGGGTTCAGAC----CTG----GCTTCCATGGA-CCTC-------CATCC----A-----AGACAAAT---TCTG-GGTTGACCTCGGATCAGGTAGGGATACCC------------------------------------------------------------------------------- Tuber_gennadii_BM667_Spain -------------------------------------------------------------------------------------------------------------------------------------G---------GGTGGTC?TGA-CTCCGTGGTGGGTCGGAGCCGCCCCCTTCAT------C----AAACACTTCCCGCGTACCTCTCCATGTTGCTTCCCCGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCGGCCTTCTGCCGCCCGTCC-C--GACGC---CTGGCC-----------GTCCGGTGACGGAGGCGC-C-CGGGGG-----AGGCCCA---------CCGACAAAA----------CG--CTACAGAGC-CGAC-AAGTGGAGTCTGAC-AGGG----CC-TG-GTGCCCGAT---GG--TGCAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCA-GGGCATGCCTGTCCGAGCGTCACAGAAATACCCCA-CTCACCAGCCT----TT-GGTGGTCTTGGCCCAGGTGGA------------TTCAG-GGGGCCGCCAAGTGCGG-------TCCAGTC--CACCGC-GCCGAAATGCATATGGCCGGGCAGCC-GG--TGCCGGTG--ACTGACTTAGT-AATGGGT-GCCGCAGG---GCAAACCAGTCAGGA-GCCGTCTCGAGCC----CCG---AGCCCAGGGAAGGCCCCACGTGG-CCCCC----C-----GAAAGAGAGATCATG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_gennadii_JT9627_Spain_paratype ---------------------------------------------------------------------------------------------------------CATTAGTATTAT----ATCTGTGTGCCGG---------GGTGGTCATGA-CTCCGTGGTGGGTCGGAGCCGCCCCCTTCAT------C----AAACACTTCCCGCGTACCTCTCCATGTTGCTTCCCCGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCGGCCTTCTGCCGCCCGTCC-C--GACGC---CTGGCC-----------GTCCGGTGACGGAGGCGC-C-CGGGGG-----AGGCCCA---------CCGACAAAA----------CG--CTACAGAGC-CGAC-AAGTGGAGTCTGAC-AGGG----CC-TG-GTGCCCGAT---GG--TGCAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCA-GGGCATGCCTGTCCGAGCGTCACAGAAATACCCCA-CTCACCAGCCT----TT-GGTGGTCTTGGCCCAGGTGGA------------TTCAG-GGGGCCGCCAAGTGCGG-------TCCAGTC--CACCGC-GCCGAAATGCATATGGCCGGGCAGCC-GG--TGCCGGTG--ACTGACTTAGT-AATGGGT-GCCGCAGG---GCAAACCAGTCAGGA-GCCGTCTCGAGCC----CCG---AGCCCAGGGAAGGCCCCACGTGG-CCCCC----C-----GAAAGAGAGATCATG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_gennadii_M1904_Italy ---------------------------------------------------------------------------------------------------------------CATTAA-------TATTATTCTGTGTGAGGGGGGAGGCCATGA-CTCCGCGGCGGGTCGGTGCTTCCTCAATCTT-----------CAATCACCCCTGTGTACCTCTCCATGTTGCTTCCCCGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCGGCCATTGCCGCCCGCACC-CGG?CCGC---TTG------------CGGTCCGGGGTCGGAGGTGG-C-CGGGGG-----AGGGCCAACCACGAAACTCTGCAAA----------------------G-CCGA-CCGTGCAGTCTGAC-CGGG----CC-TC-GCGCCCGAAGCTAC-----AAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCA-GGGCATGCCTGTCCGAGCGTCACAGAA--AGACCCCCTCAGCAGCCTTTGGTT-GGTGGTGTTGGCCGGCGTGGA------------GTGGG-ACGGCCGTCGTAGGCGTGCGCGTCCCCACTT--CACCCA-GCCGAAATGCATATGGCCGGGCAGCC-GG--TGGCGGTG--ACTGACTTAGT-AACAACT-GCCGCAGG---GCATACCAGTCAGCA-GCCGTCCCGAGCC----CCG---AGCCCTGGGAGCACCCCCGTGTG-CCTCC-----------CGCAAAC------------------------------------------A-CTTACGG----------------------------------------------------------------- Tuber_gibbosum_JT26632_Washington ---------------------------------------------------------------------------------------CCGTAGGTGAACCTGCGGAAGGATCATTAA--------ATATACCTG---------AGATGCCTT---------------------------------------------TAAGGCTCTCTGAGTA--AACCCATATTAAACACTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACAA-ACTCATAGTCTGAG-AAGG----CT-AT-TTGCCGTAATTATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACTAGACCC-CTCACGTT--T----GA-CGTGGTATTGATCGAAGTAAG------------GCAGA-AA-----------------TTGCTT--------TACTCC-TTCAAAATTGAA-AGGCCGGAAAAGT-GA--TCTTGGTG--ACAGACTTGCA-GAGTGTT-GTGAAAAC---CTAAATTAGTCTTCA-GTCAGGTCAGG-T----CCG---AGCTTC--TGGA-CTCC-------CATTC----A-----ATATAAAC----------------------------------------------------T-ATTAGA-------------------------------------------------------- Tuber_gibbosum_JT30580_Oregon ---------------------------------------------------------------------------------------CCGTAGGTGAACCTGCGGAAGGATCATTAA--------ATATACCTG---------AGATGCCTT---------------------------------------------TAAGGCTCTCTGAGTA--AACCCATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACACTTA---T-ACAA-ACTCATAGTCTGAG-AAGG----CT-AT-TTGCCATAATTATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACTAGACCC-CTCACGTT--T----GA-CGTGGTATTGATGGAAGTAAG------------GCAGA-AA-----------------TTGCTT--------TACTCC-TTCAAAATTGAA-AGGCCGGAAAAGT-GA--TCTTGGTG--ACAGACTTGCA-GAGTGTT-GTGAAAAC---CTAAATTAGTCTTCA-GTCAGGTCAGG-T----CCG---AGCTTC--TGGA-CTCC-------CATTC----A-----ATATAAAC-----------------------TATTAGA-------------------------------------------------------------------------------------- Tuber_huidongense_DQ478632_China ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCA--AACCCA-CTCATAAA--T----AT-TATGGTATTGATGGAAGTGAA------------CTGAG-TCA----------AACAATGTACTTGGGGT---CACCCC-GTTGAAATGCAT-AGGCAGGACAATA-AA--CCTGTACA--ATGAACTTAGT-AACTGTC-TGAAAGAC---ACAAACCAGTTCCTT-GTTGGGTTACAGAC---CTT----G-CTTCACTGA-CCTC-------CATCC-------------------------------------------------------------------------------------------------------------------------------------- Tuber_indicum_A_GB236_China ---------------------------------------------------------------------------------------------------------------CATTAT----G----ATGCTTTG---------GGATACCGT----TGTGTA--------------TTCCTGAACA------C-----AAACCTCCCTGCGTATCACTCCATGTTGCTTCCATGGGTTAAGCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTGCTGGTAC-C-TGTGGG-----AGAT-CT---------CCACATTAA----------CA--GAGTA---T-TTGA-TTACGCCGTCTGAG-CTGG----CC-AC-GTGTCAGAT----T--T--ACTGAAGTA-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTACA--CACCTT-ATCACAAC--A----TT-TGTGGTCTTGGCAGGAGTGAA------------TTGCT-AG-T-------CTATGACAATATTCCAGCTGTCCACCAT-GCTGAAAATTAT-GGGAAGGTTACCA-GG--CGTGAACA--ACAGACTTTGT-AAAGGGT-TGCAGGAC---CTGTATCAGTCACCA-GTCATGTCTGGTG----CCT---TACCTT-AGGGA-CCCC-------CATCC----T-----AGATGAAC---TATG-GGTTGACCTCGAATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_indicum_A_GB240_China ---------------------------------------------------------------------------------------------------------------CATTAT----GA---ATGCTTTG---------GGATACCGT----CGTGTA--------------TTCCTGAACA------C-----AAACCTCCCTGCGTATCACTCCATGTTGCTTCCACGGGTTAAGCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGCTGGTAC-C-TGTGGG-----AGAT-CT---------CCACGTTAA----------CA--GAGTA---T-TTGA-TTACGCCGTCTGAG-CTGG----CC-AT-GTGTCAGAT----T--T--ACTGAAGTA-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTACA--CACCTT-ATCACAAC--A----TT-TGTGGTCTTGGCAGGAGTGAA------------TTGCT-AG-T-------CTATGAAAATATTCCAGCTGTCCACCAT-GCTGAAAATTAT-GGGAAGGTTACCA-GG--CGTGAACA--ACAGACTTTGT-AAAGGGT-TGCAGGAC---CTGTATCAGTCACCA-GTCATGTCTGGT-----CCT---TACCTT-AGGGA-CCCC-------CATCC----T-----AGATGAAC---TATG-GGTTGACCTCGAATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_indicum_B_GB237_China ---------------------------------------------------------------------------------------------------------------CATTAT----AA---ATACTTTG---------GGATACCAT----TGTGTA--------------TTCCTGGACA------C-----AAACCTCTCTGCGTATTACTCCATGTTGCTTCCACAGGTTAAGCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATGCTGGCAC-C-TGTGGG-----AGAT-CT---------TCACATTAA----------CA--GAGTA---C-TTGA-TTATGCTGTCTGAG-CTGG----CC-AC-GTGTCAGAT----T--T--ACTGAAGTA-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTACA--CACCTT-ATCACAAT--A----TT-TGTGGTCTTGGCAGGAGTGAA------------TTGCT-GG-T-------CTATGGAAGTATTCCAGCCGTACACAAT-GCTAAAAAATAT-GGGAAGGTTACCA-GA--TATGAACA--ACAGACTTTGT-AAATGGT-TGTAGGAC---CTAGATCAGTCACAA-GTCATGTCTGGTC----CCTAAGGACCTT-AAGGA-CCCC-------CATCC----T-----AGATGAAC---TATG-GGTTGACCTCGGATCAGGTAGGAATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_indicum_B_JT29410_Oregon --------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTAT----AA---ATACTTTG---------GGATACCAT----TGTGTA--------------TTCCTGAACA------C-----AAACCTCTCTGCGTATTACTCCATGTTGCTTCCACGGGTTAAGCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATGCTGGCAC-C-TGTGGG-----AGAT-CT---------TCACATTAA----------CA--GAGTG---C-TTGA-TTATGCTGTCTGAG-CTGG----CC-AC-GTGTCAGAT----T--T--ACTGAAGTA-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTACA--CACCTT-ATCACAAT--A----TT-TGTGGTCTTGGCAGGAGTGAA------------TTGCT-GG-T-------CTATGGAAGTATTCCAGCCGTACACAAT-GCTAAAAAATAT-GGGAAGGTTACCA-GA--TATGAACA--ACAGACTTTGT-AAATGGT-TGTAGGAC---CTAGATCAGTCACAA-GTCATGTCTGGTC----CCTAAGGACCTT-AAGGA-CCCC-------CATCC----T-----AGATGAAC---TATG-GGTTGACCTCGGATCAGGTAGGAAT{AC}CCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_latisporum_DQ898185_China ----------------------------------------------------AGAGTTTTGTGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACC----A----ATATCTA---------GGGTCTCAT----ATAGGA--------------CTCCTAATCA------A-----ACACATTCCTGTGTATTCTTCCATGTTGCTTTCCCAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTAG--CCACTGCTGCCAGCC---GATATT---CT----------------AAT--GGTTTGAGGTGT-T-TGGGGA-----AGGGCCAGT---------TATT-AA----------ACC-TTTAT---A-CCAA--TTAGCTGTCTGAG-AAGG----CT-AT-GTGCCCTAA--TCT--TT-AAACATATT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTCA-GGGCATGCCTGTTCGAGCGTCACT-AAC-AACCAT-CTCACAGAG------AA-TGTGGTATTGGCCTGAGTGGGTTGCACTT----GCAGT-GC---AAA------------TCTCA----------CTTG-GCTGAAATGGAT-TGGCCAGACAAGGAGAC--AATGGCAA--CAGACTCTCA-GAGTGTTTTTGAAATG---CTAAACTAGTCTGT--GGCAGGTTGAACT----CTG---AGCTAAA-AGGA-CTGAT-------ATTT----A-----GTGTAAAC-AAGAAA-TGTCGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGGAGGAAAA------------------------------------------ Tuber_lauryi_nom_prov_JT26987_Oregon ---------------------------------------------------------------------------GTATCAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATAAA---TATATGGGATGCTCAATATGAGTTCTCAACA-AAACACTTTCATGTGTATCCTTCCATGTTG----------------------------------CTTCCTCAGG--CCAGTAGCCATTGCTACCAGCCAGGCCGATCTTCGGTCACTAGGTTGAGGTGCCTGGGGAAGGGTCAATCATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTTTACATTG---------------------------------------A--CTTATTGTCTGAC-AAGG----CC-AT-GTGCCATTATATTT-----AAATATTTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCAA--TCACCTTATG-------TGTGGTATTGGCAGATGTGGGTTGAGTAC------AAA-GCT------TAGCAGTGATACTCTCC-------CACACT-GTTGGAATGAAT-AGGCTAGAAAAGTAGAT--CATAGCA--ACAGACTTTCA-GAGTATT-TTGAAATG---CTAAATTAGTTTGAA--GCTGGTCAGAAT----CTAGGCCAT-----TTGA-CCCC-------CATTC----T-----GTGTAGAG-CAGTAA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCA Tuber_liaotongense_DQ478645_China ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCA--AACCCA-CTCATAAA--T----AT-TATGGTATTGATGGAAGTGAA------------CGGAA-CCA----------ATCTATGTGTTCAGGT----CATCCC-ATCGAAATGTAT-AAGCAGGACAATC-AA--CCTGTGCA--ATGGACTTAGT-AACTGTC-TTGAAGAC---ATAAACCAGTTTGTT-GCTTGGTTTTGACT----TA----GCTTCCATGGA-CCTC-------CATCCAAG-AT----A-ATAAAC---TCTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCA----------------------------------------------------------------- Tuber_liui_DQ898182_China -------------------------------------------------------------TGGAAGTAAAAGT{AC}GTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACA----A----ATGTCTG---------GGATGTCCA----ATCGGG--------------CTCCCAAGTA------A-----ACACATCTATGTGTACTCTTCCATGTTGCTTCCCCAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGG--CCACTGCTGCCAGCC-TAGAGCTTTA-CA-------------GGT-TATTGGGTTGAGGTGT-C-TGGGGA-----AGGACCC---------AATATC-AA----------AC--TTTTG---A-ACAA-ATTTGTAGTCTGAT-AAGG----CT-AT-ATGCCGCAACCTTT----AAAACATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCTT-CTCACAGAA------AA-TGTGGTATTGGTAGAAGTGGGT-----------GTAGT-ACAC-AAA------GTGCTTTGTCT--------TACTCT-ACTGAAATGAAT-AGGCCGGTAAAGA-GGA-CCATGGTA--GTAGACTCTAG-GAGTGTT-GTATAATG---CTAAACTAGTCTTCA--CCAGGTGTAGATC---CTG---AGCTAAT--GGA-CGCC-------CCCTT----AT----GTCCAAAT-CAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATA------------------------------------------------------- Tuber_luomai_JT6003_Oregon_Holotype -----------------------------------------------------------------------------------------------------------------------------------------------------TATCTGGGATACCAAT------AAGGTTTCCCAACCC-----------AACCCCTTACTGTGTACCAATCCATGTTGCTTTCCCAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCTGCCCA--CGCAGTTGTCTCAG-CCAGCCAGCCTTAATGTGTTCCTCTGGTCATAAGCTATATAGGCCA-C-TGGGAA-----AGATTCA----------ATTCAAACATT-------------CTAAGTG----A-ACCAGTCATCTGAG-TAGG----CC-TA-GCGCTATATTATTGT----AAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCCCTTGGTATTCCTTG-GGGTATGCCTGTTCGAGCGTCACTATAG--ACCCT-CTCATAAA--T----AT-TATGGTACTGATGGATGTGAA-------------TCAG-GAT---------TGTGAATACACCTGTAT----CACCCC-ATTGAAATGTAT-GAGTAGGACAATC-CA--CATCTGTA--ATAGACTTAGT-AAATGTTCTTGCAGAC---ATAAACCAGTCTCAT-ACAGGGTGAAGTC----CTGT-----CGCTATGGATCCCC--------ATTC----A-----ATATGAAC---TCTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA----------------------------------------------- Tuber_lyonii_GA21_Georgia ---------------------------------------------------------------------------------------------------------------CATTAT----GC---ATA-TCTG---------GGATACCAA----GAGGGT--------------CCCTGAA-TC------C----ATCTCCTCACTGTGTACCAATCCATGTTGCTTTCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGC-C-TGGGAG-----AGGT-CC---------AACCCAACA----------CC--AAT-A---A-TTGA-GTCCGCAGTCTGAG-TAGG----CC-TA-GCGCCTTGAATGTT--T--GAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCTTGGTATTCCTTG-AGGCATGCCTGTTCGAGCGTCACTACA--AACCCT-CTCATAGT--T----AT-TATGGTATTGATGGAAGTGAA------------CTGTG-T----------CTATTTATGTACTCACAC----CACTCC-ATTGAAATGAAT-AGGCAGGACAAGT-GA--CAACTGCA--ATGGACTTAGT-AAATGGT-TTTCAGAC---ATGGACCAGTTCTTT-GCTATGTTGTACA----GCC---TGTATCCATGGA-CTCC-------CATCC----A-----GTAAGCAC---CTTG-GGTTGACCTCGAATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-A------------------------------------------------------------- Tuber_lyonii_OSC58244_Texas ------------------------------------------------------------------------------------------------------------------CAT---------------------------------TA----TAAGGT--------------TCCTG-A-TC------C----ATCTCCTCACTGTGTACCAATCCATGTTGCTTTCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCC-C-TGGGGG-----AGGT-CC---------AACCCAACA----------CT--GAT-A---A-TTGA-GTCTGTAGTCTGAGTTAGG----CC-TA-GAGCCTAGAACTTT--T--AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTTGAGCGTCACTACA--AACCCT-CTCATAGA--T----AT-TATGGTATTGATGGAAGTGAA------------CTGTG-T----------CTACTGGTGTACTCGCAC----CACTCC-ATCGAAATGAAT-AGGCAGGATAGGT-GG--CAACCGCA--AGCGACTTGAT-AAACGGT-TTTCAGAC---ATGGACCAGTCCTTT-GTTATGTTGCGCA----GCC---TGTATCTATGGA-CTCC-------CATCC----A-----CTAAGCAC---TTTG-GGTTGACCTCAAATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_macrosporum_JT13362_Italy ------------------------------------------------------------------------------------------------------------------------------------TTC--------AGGT-----------------------------TCCCCGAGCA-----------AACAACCCCATGTGTACACTTCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCGG--CCACTGCTGCCAGCC-CGACCCCT---CCGGCG--------GTCGACCACGGGCTGAGGTGC-C-TGGGGG-----AGGGCCC---------ATCCCCAAC----------------ACGTCGC-TCAT-CAAAGCAGTCTGAG-CAGG----CA-GT-CGGCCTGAATCAAG-----TAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCA-GGGCATGCCTGTTCGAGCGTCAATACA--AACCCCCCTCACCCTCCT-------GGTGGTGCTGGCGGAGGTGGGTCGCCCTCCCGGCGACA-GGCC-----------------------------CACCCC-GTCGAAACTCAT-GGGCCCGAGAGCC-GA--CGGCTGCG--ACTGACATTCC-AAGCGCT-TTGAAAGC---CAGAACCAGTCCGCG-CCGAAGTCTCG------CGG---TGCCCCACTGGGCCTCC-------CGTCC------------AGCGCAACACTCTGGGTT-------------------------------------------------------------------------------------------------------- Tuber_maculatum_AM406673 ------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC------------------------------------------------------CATGTTGCTTTCCCAGGCCAGCGGCCACTGCTGCCAGCCATGCCGTTTTTCGGTTACATGGTTGAGGTGCTTGGGGAAGGGCTAATTATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTTTACTTC---------------------------------------AC--CTTATTGTCTGAG-AAGG----CC-AT-GTGCCGTAATCTTT-----AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCGCAAAA---ACCCAGATCACCTA--G----AG-TGTGGTATTGGCAGAAGTGGCC-----------G--GG-GC-------TATCAGTGCTGCTGC---------CACTCT-GCTGGAATGAAT-AGGCTGGAAAAGTAGAT--CATAGCA--ACAGACTTTCA-CAGTATT-TTGAAATG---CTAAATTAGTTTGAA--GCTGATCGGAAC----CTAAGCCAT-----TTGA-CCCC-------CATCC----T-----GTGTGAAG-CAGTAA------------------------------------------------------------------------------------------------------------- Tuber_magnatum_JT19460_Italy -------------------------------------------------------------------------------------------------------------------------------------------------------AGG-ATGCGT---------------CTCCGAATCC------T----GAATATCTCCTGTGTACCATGCCATGTTGCTTCCCCAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACGGTCACTGTGCCGC-C-TGGGAG-----GAGGGCA---------CAGTCCCAA----------AAACTACTGTC-A-TCCT-ACCAGCAGTCTGAGAAAGG--GCCC-ATCAGGCCTGACAAACT--T--AAACA-GTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCA-GGGCATGCCTGTTTGAGCGTCACTGAA--AACCCA-CTCACGGA-AT----CA-CGTGGTGCTGATGGAGGTGGC------------TTGGT-AC-CGCAGCGGCGGTGGCCGGGTC---------CACCCT-GTCGAATTTCAT-TGGGAGGATGACG-GAC-CCCCGGCT--GCTGACTTTGTAGACATCGCCTTGAAAT---GCGTGCTAGTTGCCA-GTCAGGCCCGGTC----CTG---CACGCTTGAGGA-TCCC-------TGCCA----TGGGATCCACTGTC-CAACTG-GGTT-------------------------------------------------------------------------------------------------------- Tuber_malacodermum_JT32319_Spain ---------------------------------------------------------------------------------------------------------------CATTAT----GC---ATC-TAGG---------GGATACCAA----TGAGTT--------------CCCTGAAGTG------A----AAGCCCTCCATGTGTACCAATCCATGTTGCTTTCCCAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTGGTCACGGGTCGCCAGCCATCGCTCAATGGTGTCCACTGGTTGAGTGCATCCGGAGGCTAAAGTGCTCC----GTAGAATCCGTTCCTTCAGTTA--CTCGGTTGAAAAACG-CCGCCATT---TAGTCC---------GTAGGGATCCCCGTGAGCAC-C-TGGGAG-----AGGG-CC---------TATCCAAAT----------CG--ATTAT---T-TTTG-ATCAGCTGTCTGAG-TTGG----CC-AA-GTGCCATAT-TCTT--T--GAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACA--AACCCC-TTCATA-A--T----AT-TATGGTATTGATGGATGTGAA------------CTGTG-G----------CAACCAGTGTCCCTGGAT----CACCCT-GTCGAAATGTAT-GGGCAGGACAATC-AA--CCTCTACA--ATAGACTTAGT-AACTGTT-CCAAAGAC---AAGAGACAGTCCCTT-GCAGGGTTGTG-G----CCT---CGCCTCCATGGA-CCTC-------C------------------------------------------------------------------------------------------------------------------------------------------ Tuber_melanosporum_GB200_Italy -------------------------------------------------------------------------------------------------------GCGGAGGTCATTAT----GA---ATGCTTTG---------GGATACCGT----TGTGTA--------------TTCCCGAACA------C-----AAACCTCTCTGCGTATCACTCCATGTTGCTTCCACAGGTTAAGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGCTGGCAC-C-TGTGGG-----AGAT-CT---------CTATGTTAA----------CG--GAGTA---T-TTGA-TTGTGCTGTCTGAG-CTGG----CC-AT-GTGTCAGAT----T--T--AGTAAAGTA-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTACA--CACCTT-ATCACAAA--G----TT-TGTGGTCTTGGCAGGAGTGAA------------TTGCT-AG-T-------CTATCAAAATGTTCCAGCTGTACACTCT-GCTAAAAATTAT-GAGAAGGTTACCA-GG--CATGAACG--ACGGACTTTAT-AAACGGT-TATAAGAC---CTGGATCAGTCACAA-GTCTTGTCTGGT-----CCT---TACCTT-AAGGA-CCCC-------CATCC----T-----AGATGAAC---TATG-GGTTGACCTCGAATCAGGGAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_menseri_nom_prov_JT11661_Oregon --------------------------------------CGCTTTCCTCT{GT}G{AG}TCATTT{AT}AGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACA----A----ATGACTG---------GGATGTCCT----ATCGGA--------------CCCCCAAGCA------A-----ACACATCTATGTGTACTCTGCCATGTTGCTTCCCCAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGG--CCACTGCTGCCAGCC-CAGCCCCTA---A---T---------GGGTTCCTGGGTTGAGGTGT-C-TGGGGA-----AGGGCTC---------AATATC-AA----------AC--TTTTC---A-ACCC-ACTAGTCGTCTGAG-AAGG----CC-AT-GTGCCGCAATATTT-----AAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCGA-CTCACATA--TCG-----TGTGGTATTGGTAGAAGTGGA-------------TAGT-AC-T-AAC-----ACTACTTTGTCT--------TACTCT-GCTGAAATGAAT-AGGCCAGAAAAGT-GGA-CCATGGTAA--TAGATTC-CAGGAGTGTT-TTAAAATG---CTATACTAGTCTTAT--CCAAGTCATATT----CTG---AGCCACT--GGACCCCC-------CATTT----A-----GTCCAAAC-AACAGT-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAAG-------------------------------------------- Tuber_mesentericum_CW105_Sweden ---------------------------------------------------------------------------------------------------------------CATTAC--------AACAGCCGG---------GGACGCCCCAT-GGGCGGCA-------------CCCCTGAGCA---------CCAAACCACAGCTGCGTACCATGCCGAGTTGCTTCCCCGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGCGG--------CCGTCGCCG-CCCGCCGT---GCGAGTCGCCATGTTGGCTCGCCCGGCGGAGGCGC-C-CGGGGGTGGTTGGGGTCC---------AGCCCCGACGTGAAAAACGCT----TTGGACG-GATA-ACGAGAAGTCTGAACCCGGCGCCCTCTTGGGGCCGCCAACCTG-------AAAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCA-GGGCATGCCTGTCCGAGCGTCAGTGCA--AACCCC-CTCACGGAAAC-----C-CGTGGTCCTGGTGGAGGTGGA---------------GA-GAGTCGGGCTCCCCAGCCCGGCCGC--------CACCCC-GCCCAAATGAAA-GGGGAGGAACGCG-----TGTCCGCGGACCCGACTTGGT-AGACGTTGTGATAAGC---GTAGAGCAGTCGTGC-GCCGTCCACGGT-----CCCTCCCGCCTC----GAGCCCC-------CAC----------------------------AGTGGGCCGCCGA--------GGGTCTTCTCAGG-------------------------------------------------------------------------- Tuber_multimaculatum_OSC62169_Spain_paratype ---------------------------------------------------------------------------------------------------------------CATTAA---------TATATTTG---------GGATACCCT----TACAGG-T------------TCCCTATCCT------T----TAAACCTCTCTGTGTACCAATCCATGTTGCTTTCCTCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGCAG--CCACTGCTGCCTGTA-TAGTTCAC---AA---T---------GGGCTAATATACAGAGGTAT-C-TGGGGG-----AGGGTCT---------TCTTATAAC----------TC--ATATT---G-TTAA-CCATGCAGTCTGAG-TTGG----CT-GA-ATACCATACATATC--T-TGAATAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTCA-GGGCATGCCTGTTCGAGCGTCACTACA--AACCTCACTCACAAC--A----AT-TGTGGTAATGGTAGGAGTGGA------------TTATT-A--------------TGACAAAGTCACCAGTCACACCCT-ACCGAAATGCAT-TGGGCGGACTTTT-AGG-CTTAGTGA--AGAGACTTAGT-ACATGTT-CAAAGAAT---ATATAATAGTCTCAT-GCTAGGTTAGGTC----C-----TGCCTGCCTGGA-CCTC-------CATCT----G-----GTTTATAT---ACTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_nitidum_BM105_Spain ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-ATCAGCAGTCTGAG-TTGG----CC-CA-GTGCCGTCT-TCTT--T--GAATAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACA--AACCCC-CTCATATG--T----AT-TATGGTATTGATGGATGTGAA------------CTCAG-G----------CCTAGAATGCACCTCAGT----CACCCC-GTCGAAATGCAT-AGGCAGGACAATA-AA--CCTCCGCA--AGGGACTTAGT-AAATGTT-ATGAAGAC---ATAAACCAGTCCGTC-GCTCGGTTCTG-T----TCT---GGCCTCCACGGA-CCTC-------CATCC----G-----ACATGAAA---TCTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTT--------------------------------------------------------------------- Tuber_oregonense_nom_prov_GB284_Oregon_holotype ---------------------------------------------------------------------------------------CCGTAGGTGAACCTGCGGAAGGATCATTAC-------CATATCACTG---------GGATGCCCT----GATGGG----------------------------------------CTCATTTAGTA--AACTCATATTAAACACTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACAA-ACTTACAGTCTGAG-AAGG----CC-AT-AGGCCGTAATCATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACTATACTT-CTCACGTC--T----GA-CGTGGTATTGGTAGAAGTGGT------------GCAGA-AA-----------------TTGCTC--------CACTCC-TCTAAAATTGAA-AGGCCGGAAAAT--GA--TCTCGGTG--AGAGACTTGTA-GAGTGTT-ATGAAAAC---CTAAATCAGTCTTCA-GCCAGGTTGAG-T----CCG---TGCTTC--TGGA-CCCC-------CATCC------------------------------------------------------------A-CAGTAACAT-ATTAAA-------------------------------------------------------- Tuber_oregonense_nom_prov_JT27985_Oregon_paratype ---------------------------------------------------------------------------------------CCGTAGGTGAACCTGCGGAAGGATCATTAC-------CATATCACTG---------GGATGCCCT----GATGGG----------------------------------------CTCATTTAGTA--AACTCATATTAAACACTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACAA-ACTTACAGTCTGAG-AAGG----CC-AT-AGGCCGTAATCATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACTATACTT-CTCACGTC--T----GA-CGTGGTATTGGTAGAAGTGGT------------GCAGA-AA-----------------TTGCTC--------CACTCC-TCTAAAATTGAA-AGGCCGGAAAAT--GA--TCTCGGTG--AGAGACTTGTA-GAGTGTT-ATGAAAAC---CTAAATCAGTCTTCA-GCCAGGTTGAGTC----------CGTGCTTCTGGA-CCCC-------CATCC------------------------------------------------------------A-CAGTAACAT-ATTAAA-------------------------------------------------------- Tuber_pacificum_EU837241_Oregon ------------------------------------------------------------TG{AG}AAGTAAAAAGTCGTAACAAGGTTTCCGTAGGTGA{AC}CCTGCGGAAGGATCATTACAA---A----ATGTCTG---------GGATGTCCACT---TCGGAC-------------CCCCCAAGCA------A----AACACATCCATGTGTACTCTCCCATGTTGCTTCCCCAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGG--CCACTGCTGCCAGCC-CAGTCCATA---A---TC---------GGTTCCTGGGTTGAGGTGT-C-TGGGGA-----AGGGCTC---------AATATC-AA----------ACC--TTTGA--A-CCAATCTTAGTTGTCTGAG-TAGG----CC-AT-CTGCCGCAA--TCT--TTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-ATCACAGT--T----AA-TGTGGTATTGGTAGGAGTGAACG----------GTACTTGCCT--TA---------CCTTGTCTC--------ACTAT-ACCGAAATGAAT-AGGCCAGAGAAGTGGAC-CCATGGTAA--TTGACTC-CAGGAGTGTGTTTTTTCTAATGCTATACTAGTCTTTA-CCCAAGTCAAGTT----CTG---AGCTAG--CGGA-CCCC-------CATTT----A-----GTCCGAAA-CAGA{GT}AAGGTTGACCTCG{AG}ATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCA--------------------- Tuber_panniferum_JT12835_Spain -------------------------------------------------------------------------------------------AGGTGAACCTGCGGA{AG}GG{AG}TCATTAA--------ACAAGCTTG---------GGACCCCGGAA-AGG{CT}GG{CG}--------------CTCCCTGCGCGTC--------AAACCACATCTGCGTACACTGCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGCGACCGCGCTCGCCCGTCAG-CGTGGCGC---TACGCG---------CCTCGCCTCGTCGGAGGTGC-C-TGGGGGTG---GGGGTCGG--------TACCCTCATCAAGTTTAACCACTGTTTG----------ACCGTCAGTCCGACCAGGTGGAGCC-GCGAGGCCACCGACTCG-----AAATA-GTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCA-GGGCTTGCCTGTCCGAGCGTCAGTGCA--AACCCG-CTCACGGAAGT-----C-CGTGGTTCTGACGGAGGTGGAACGT--------GTTGG-GC---------------TCGCCGCCCGGCCGGCCACCCCAGTCCAAATCAAT-GGGGCGGAGGAAGCGTGGCATCGCCC-----GACTTGGT-AGACGTCTTGATAAGC---GTATGACAGTCGGAA-------------------------GCGGTCAACGGTCC---------CGCCC-------------------------------GCCACGCGTCAGTTGTGGCGCCTTGGC-AT-CTTCATCAGGTTT----------------------------------------------------------- Tuber_pseudoexcavatum_CJ408_China ---------------------------------------------------------------------------------------------------------------CATTAT----T----GATATCTG---------GGATATCTT----TACAGA--------------TTCCCAATTA------C----AA-ACCTCTCTGGTTATTAGTCCATGTTGCTTTCACAAGTTAAGAGACATTCTTGCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGTTGTAGCTGTCATTCATACTTGGGTAGCAGATCATTACATTGTAA--CCAATTCATGTATGC-TACTACTG---CTTGCG---------CTTTAGTACTATACAGGCAC-T-TGTGAA-----AGGTCTC----------------AA----------CT--AAGCT---T-TAAA-TTATGTGGTCTGAC-TTGG----CC-AA-GTGCCATATCTCTT--A-------AGTG-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCTTTGGCATTCCTTA-GGGCATGCCTGCTCGAGCGTCACAGAA--AACCCC-ATCACAGT--T----CC-TGTGGTCTTGGTATGAGTGGG------------TTGAT-AG-TATGT-----GGAGACATGCTTATAA----CACTCT-ACTGAAATTTAT-AGACAGGATACCG-GA--TATGGGCA--ATAGACTTTGT-AAATATC-CACAGGAT---ATATATCAGTCATGT-GTCATGTTTGGTC----C-----TGATATTATGGA-CTCC-------TATTC----T-----ATACAAAC---ATTG-GGTTGACCTCGAATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_puberulum_AJ969625_Hungary -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAAGTAAAAGTCGTAACAAGGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTAGGTGAACCTGCGGAAGGA--T--CATTA--CAAAAT----------G--TTATGGGATGTCCTAA-C--GGGCACCCA-AGCAAACACATCC----ATATT-AA----------AC--TTTTGA--A-ACAA--TTACTAGTCTGAT-AAGG----CC-AT-ATGCTGTAAAAATT---T-AAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-CTCACAGA--T----AA-TGTGGTATTGGTAGAAGTTGA-------------TAGT-AC-T-AAC-----ACTACTTTGTCTG--------ACTCT-ACTGAAATTCAT-AGGCCAGAGAAGT-GGA-CTATGGTAA--TAGACTC-CAGGAGTGTT-TTAAAACG---CTAAATTAGTCTTCT--CCAAGTCATGTT----CTG---AG--CCATTGGACCCCC-------CATTT----A-----GTCCAAAC-AAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAT{AT}AAAGCGGAGGAAGTTCGAATAAAGTCGTACCGCAGGTTC?CCTAC----------- Tuber_quercicola_AY918957_Oregon ---------------------------------------------------------------------------------------------------------------CATTATGT---------ATCTATG--------GGACTTCAA-------------------AGTGGTCCCTGATTC-----------AAACCCTCTCTGTGTACCAATCCATGTTGCTTTCCTAGGTGGTTGGTCCGAGCTGCCGCCCAACATTGCCTGCTAGTTAAGTCAATCTGAGTTGCTATTATTGAAACTTGGAACCTGACACTTTCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAGTGT----G-AGCTTTAATGAGTCAGCAAGCTCAATTG-TTATCCGTCGGGATGAGCTATTCAGGTCC-C-TGGGAA-----AGGGCC----------TATCCAAAGTTAA-------------CACTTC----A-ATCAGCTGTCTGAG-TTGG----CC-GA-GTGCCATATTCTTTG-----AACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCA--AACCCA-CTCATAAA--T----AT-TATGGTACTGATGGAAGTGAACC----------CTG-G-GC-----------ACTAATATGCCTAGAT----CATTCC-ATTGAAATGCAT-AGGCGGGACGATC-AA--CCTTCGCA--ACTGACTTAGT-AACTGTT-TTCAAGAC---AAAAACCAGTCACTT-GCACGGTTCCAGCC---CAG-----CCTCCATGGA-CCTCG------CATCC----A-----AGATGAAT----CTG--GGTGAC-TCG-ATCAGGTAGATACACGGAC----------------------------------------------------------------------------- Tuber_rapaeodorum_AJ557522_Hungary -------------------------------------------AGCTATCATCCACGCGTGGAGCTCTCCATAGGTCGACCTGCAGGCGGCCGCACTAGTGATTCTTGGTCCATTAGAGGAAGTAAAAGTCGTAACA------AGGTTTCCGTA----GGTGAACCTGCGGAAGGATCATTACCAATATCTGGGATGCCAAAGACA-------------CAGGCTCCCGA--TAAAACACATTTATGCGTATCCTCCCATGTTGCTTTCCCAGGCCAGCGGCCACTGCTGCCAGCCATGCCGTTTTTCGGTTACATGGTTGAGGTGCTTGGGGAAGGGCTAATTATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTTTACTTC---------------------------------------AC--CTTATTGTCTGAG-AAGG----CC-AT-GTGCCGTAATCTTT-----AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCGCAAAA---ACCCAGATCACCTA--G----AG-TGTGGTATTGGCAGAAGTGGCC-----------G--GG-GC-------TATCAGCGCTGCTGC---------CACTCT-GCTGGAATGAAT-AGGCTGGAAAAGTAGAT--CATAGCA--ACAGACTTTCA-CAGTATT-TTGAAATG---CTAAATTAGTTTGAA--GCTGATCGGAAC----CTAAGCCAT-----TTGA-CCCC-------CATCC----T-----GCGTAAAG-CAGTAA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCA Tuber_regimontanum_ITCV909_Mexico_holotype ---------------------------------------------------------------------------------------------------------------CATTAT----G----ATGCTTTG---------GGATACCAT----TATGGG--------------TTCCTGATCA------C----AAAACCTCTCTGCGTATCAATCCATGTTGCTTCCACAGGTCAAGAGAAATTCCTCCTCGACTTGTTTAGCTTTTGACCTTTCGTCATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTATGCAAGCAC-C-TGTGGT-----AGAT-CT---------CAATTTCAA----------CC--AAGTA---T-TTGA-TCATGCTGTCTGAC-CTGG----CC-AT-GTGTCAGAT----T--T--ATTTAAGTG-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTGCA--CACCTT-ATCACAAA--A----TT-TGTGGTCTTGGTAGGAGTGAA------------TTACT-GG-T-------CCATGAAAATGTTCCAGTTGTACACCTT-GCTGAAATTTAT-AGGAAGCTTACCA-GG--CATGAATA--ACAGACTTTGT-AAACGGC-CATAGGAC---CTGAATCAGTCACAA-GTCATGCCAGGT-----CCT---TACCTT-AAGGA-TCCC-------CATCC----T-----ATATGAAC---TATG-GGTTGACCTCGAATCAGGTAGGG------------------------------------------------------------------------------------- Tuber_rufum_GB213_Italy ---------------------------------------------------------------------------------------------------------------CATTAT---------ACATACAGG--------GGACGTTTT-------------------AGCGTTCCCGGACCC-----------AAACCCTCTCTGTGTACAAATCCATGTTGCTTTCCCAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTGGTGG--CAGCAGCTGTCCAAC-TCTGCCTG---TATAGCTTACCTCTTTGGATGAACTATGCAGGCCC-C-TGGGAG-----AGGGCC----------TATCCTGAG----------------CCAATTA-TTGA-ATTAGCTGTCTGAG-TTGG----CC-CA-GTGCCATTTTCTTT-----AAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTTGAGCGTCACTGCA--AACCCG-CTCATAAA--T----AT-TATGGTTGTGATGGAAGTGAA------------CTGAG-GC----------TATCAGTATGCCTGGGT----CACCCT-GTCGAAATTCAT-AGGCAGGACAATT-AA--CCACTGCA--ATGGACTTAGT-AACTGTT-TCAAAGAC---ATCAACCAGTCCCTT-GCTAGGTGCTGGC----CTG----GCCTCCATGGA-CCTC-------CATCC----A-----AGATAAAC---TCTG-GGTTGACCTCGGATC--------------------------------------------------------------------------------------------- Tuber_sancarloensis_ITCV181_Mexico_holotype ---------------------------------------------------------------------------------------------------------------CATTAT------TATAATGCGTGA--------AAATGCCCCTA-ACACGGG---------------------------------------------------------CATACT------CTAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCT--------------------------------------------AA-ACTTACAGTCTGAG-AAGG----CC-AT-GGGCCATAATCTTT-----AAACATTTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCATA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCCC-ATCACAAA--G----AG-TGTGGTATTGGCAGAAGTGG-------------GTAGG-GC-------TGGCAGTGTTGGCCC---------CACTCT-GCTGGAATGAAT-AGGCCGGAAATGTAGA--CCATGATA--ACAGACTTTCA-GAGTATC-CCCTGATG---CTAAATTAGTTTGTA-GGCTGGTCAGAAT----CCAGGTCGT-----TGGA-CCCC-------CATTC----T-----GTGTAAAG-CAGTAA-TGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_sancarloensis_nom_prov_ITCV885_Mexico ---------------------------------------------------------------------------------------------------------------CATTAT------------------------------------------------------------------------------------------------------TATAATGCGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATGC-C-CTTAAC-----AGGGGCA---------TACTCTAGA------------------AAACT-CTAA-ACTTAAAGTCTGAG-AAGG----CC-AT-GGGCCATAATCTTT-----AAACATTTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCATA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCCC-ATCACAAC--G----AG-TGTGGTATTGGCAGAAGTGG-------------GTAGG-GC------------TGGCTGTGCTGGCCC----CACTCT-GCTAGAATGAAT-AGGCCGGAAATGTAGA--CCATGGTA--ACAGACTTTCA-GAGTATC-TCGTGATG---CTAAATTAGTTTGTA-GGCTGGTCAGAAT----CCA---GGCTGT--TGGA-CCCC-------CATTC----T-----GTGTAAAG-CAGTAA-TGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_separans_JT7697_Oregon ----------------------------------------------------------------------------------------------------CTGCGGAGGATCATTACAA---A----ATGTCTG---------GGATGTCCA----ATTCGGAC------------CCCCCAAGCA------A----AACACATCCATGTGTACTCTCCCATGTTGCTTCCCCAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGG--CCACTGCTGCCAGCCCCATGCCTTA---AT--T----------GGTTCCAGGGTTGAGGTGT-C-TGGGGA-----AGGGCCCG---------ATATC-AA----------AC--TTTTG---A-ACAA-ATTAGATGTCTGAG-AAGG----CC-AT-GTGCCGTAACATGT-----AAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-CTCACACA--T----AA-TGTGGTATTGGTAGAAGTGGA-------------TAGT-AC-T-AAC-----ACTACTTTGTCT--------TACTCT-GCTCAAATAAAT-AGGCCAGAGAAGT-GGA-CCATGGTAA--TAGACTC-CAGGAGTGTT-TTAAAATG---CTAAATTAGTCTTAA--CCGAGTCATGTT----CTG---AGCTACT--GGACCCCC-------CATTT----A-----GTCCAAAT-CAAAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCCGGAGG---------------------------------------------- Tuber_shearii_JT12498_North_Carolina --------------------------------------------------------------------------------------------------------------------------------------------------------------TGGG--------------TTCCCAAAAC------A----AACACATTCATGTGTATCCTCCCATGTTGCTTTCCCAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGG--CCACTGCTACCAGCC-AGTCCATT---AT---T---------TGGTCTTCAGGTTGAGGTGC-T-TGGGAA-----AGGGTCA---------TTTAAC-AA----------A---CTTTA---T-ATTA-ACCTATTGTCTGAT-GAGG----CT-AT-ATGCCATAA-TATG--T--AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACAAAC--AATCTG-ATCACCAT--A----TG-TGTGGTATTGGCAGAAGTGG-------------ATATA-GT-C-ATG-----AGTTTCAGACTC--------CACTCC-GCTGGAATAAAT-AGGCTGGAAAAGT-AGA-TCATAGCA--ACAGACTTTCA-GAGTATT-TTGGAATA---CTAAATTAGTTTAGA--GCAGATCAGAAT----CCA---GGCCAG--TTGA-CCCC-------CATCC----T-----GTGTAATG-CAGTAA-GGTTG------------------------------------------------------------------------------------------------------- Tuber_shearii_OSC51052_North_Carolina -------------------------------------------------------------------------------------------------------------------------------------G---------GATGCTCTA----TATGGG--------------TTCCCAAAAC------A----AACACATTCATGTGTATCCTCCCATGTTGCTTTCCCAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGG--CCACTGCTACCAGCC-AGTCCATT---AT---T---------TGGTCTTCAGGTTGAGGTGC-T-TGGGAA-----AGGGTCA---------TTTAAC-AA----------A---CTTTA---T-ATTA-ACCTATTGTCTGAT-GAGG----CT-AT-ATGCCATAA-TATG--T--AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACAAAC--AATCTG-ATCACCAT--A----TG-TGTGGTATTGGCAGAAGTGG-------------ATATA-GT-C-ATG-----AGTTTCAGACTC--------CACTCC-GCTGGAATAAAT-AGGCTGGAAAAGT-AGA-TCATAGCA--ACAGACTTTCA-GAGTATT-TTGGAATA---CTAAATTAGTTTAGA--GCAGATCAGAAT----CCA---GGCCAG--TTGA-CCCC-------CATCC----T-----GTGTAATG-CAGTAA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_sp_JT28121_Japan -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTC-TTGGACACCACATTGTGGGTCCTTGTGTCAATGTACCTTTTTTCTTTTTTATACTCTTG-TAAA-ACTAGCAGTCTGAC-TAGG----CC--ATGTGCCTTTTTAATGA-----AATAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATTGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTACA--AACC-CTCTCACATTGTAATA-ATGTGTGGTATTGGCAGAAGTCGT------------------AGG-------------GACCTTTCCCAGAATC-CACTCT-GCTGAAATATAT-CGTGCAGATATCC-----CATACTGGTAAATGACTTTTT--TATGCT--AAAGCGT---TCAACGCTCTC-CAGCACTTGAGTCAGTTGG--C-------CATTGGTAGAACCGCACGTTATCAGGACCCCCATCCTTTGTATATATCTTTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAAAAGAAACCAACAGGGA-TTGCCT-CAGTAACGGCGAGTGAAGCGG Tuber_sp_RH73_Iowa ------------------------------------------------------------AAGTAAAA-GTCGTAA-CAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAG----A----CATATCTG---------GGATGCCATTC--TGGGT---------------CCCCGACTCC------------AAACCCCTCTGTGTACCAATCCATGTTGCTTCCACAGTTTAAGAGTTCCTCTGTGGGTGGCATTTGCCATCGTTGCCTGCTCTGGTTGTTGACCGTGTCCGTTGTTGCCGTCTGCTTGAAGTGGATGAGTGCAGCAGCCCAGACTGCTATACCGTGCAGGTATCGCCAGCTATAACCGCCCATATTCAGCCTCCACACTG----------------------------------------------------------------------------------------------------------------------------------------------------------GTGGAGCT-ATTGAGGCAT-C-TGTGAG------AGGGTC---------CAAATCCAA-------------CCA-TGTCTG-TG-A-ACCAGCTGTCTGACCT-GG----CC-ATGTG-CCGGATTCAAT-----AAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATAGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGTGTCACTACA--AACCCCCCTCACAGATATT-------GTGGTGTTGGTAGGAGTGGG-------------T-G--AC-AGGTGCAATGGTG-CCTGTTCT---------ACTCT-GCCGAAATTCAT-TGGAAGGACAGTG--AG---CCTGATAAGTAGACTTTGTAAATGTCCATGGGATAT---GAATCAGTCTTGTAC---CCGGCCCAGTC----CTG---CCTACCC--GGA-CCCC---------CCA---------TCCATGATGAACAATG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAAAAGAAACCAACAGGGA-TTGCCC-CCA------------------ Tuber_sp._ex._Angiosperm_Italy_AJ879679 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC------T----GAATATCTCCTGTGTACCATGCCATGTTGCTTCCCCAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACGGTCACTGTGCCGC-C-TGGGAG-----GAGGGCA---------CAGTCCCAA----------AAACTACTGTC-A-TCCT-ACCAGCAGTCTGAGAAAGG--GCCC-ATCAGGCCTGACAAACT--T--AAACA-GTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCA-GGGCATGCCTGTTTGAGCGTCACTGAA--AACCCA-CTCACGGA-AT----CA-CGTGGTGCTGATGGAGGTGGC------------TTGGT-AC-CGCAGCGGCGGTGGCCGGGTC---------CACCCT-GTCGAATTTCAT-TGGGAGGATGACG-GAC-CCCCGGCT--GCTGACTTTGTAGACATCGCCTTGAAAT---GCGTGCTAGTTGCCA-GTCAGGCCCGGTC----CTG---CACGCTTGAGGA-TCCC-------TGCCA----TGGGATCCACTGTC-CAACTG-GGTTGACCTCAGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGA---------------------------------------------- Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687 ------------------------------------------------------------------------------------------------------------------TAAT---?----CATGTCGG---------GGGCGCCAAGGGATGCGTC--------------?CCTTAATCC------TG---?AATATCTCCTGTGTACCATGCCATGTTGCTTCCCCAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACGGTCACTGTGCCGC-C-TGGGAG-----GAGGGCA---------CAGTCCCAA----------AAGCTACTGTC-A-TCCT-ACCAGCAGTCTGAGGAAGG--GCCC-ATCAGGCCTGACAAACT--T--AAACA-GTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCA-GGGCATGCCTGTTTGAGCGTCACTGAA--AACCCA-CTCACGGA-AT----CA-CGTGGTGCTGATGGAGGTGGC------------TTGGT-AC-CGCAGCGGCGGTGGCCGGGTC---------CACCCT-GTCGAATTTCAT-TGGGAGGATGACG-GAC-CCCCGGCT--GCTGACTTTGTAGACATCGCCTTGAAAT---GCGTGCTAGTTGCCA-GTCAGGCCCGGTC----CTG---CACGCTTGAGGA-TCCC-------TGCCA----TGGGATCCACTGCC-CAACTG-GGTTGACCTCAGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAA--------------------------------------------- Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304 --------------------------------------------------------------------------------GGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAA----A----CAAGCCGGGT--------GACGCCCGTG-GGGCGGCCA------------CCCAGAGCACCA----------AACCACAGCTGCGTACAATGCCATGTTGCTTCCCCGGGCCAGCGGCCGTCGCCGCCCGTCGGCGAGACACAGGCGTGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCCG-CGCGGAGGCGC-C-CGGGGGT----G-GGGCTCCCGC----CCCTCGAAACTA-------AGACGTCGGGA---GCGT-GGACTGTGTCTGACCTGGGC--CAC-ATTGGGCCGCCGAAAACT-TG---ACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCA-GGGCATGCCTGTCCGAGCGTCAGTGCA--AACCAC-CTCACGGA-AC-----A-CGTGGTGCTGGCGGAGGTGGTG-----------TCGGA-TCGGGCCGCGATGGCGGCCCGGTCCTCCC----CACCCC-GCCGAAATGTAT-GGGGAGCAACACG-CAT-TGGCGGAC---CCGACTTGGTAGACGCTGTGGTTAGCG---TGGAGC-AGTCGCGGGGCCATTGCTGTCCCTCCCGCCTCGAGCCCGTGGCGGCATCTCCGGGGCATCTCGTCAGGTTTGACCTCGGATCAGGTAGGGGTACCCGC------------------------------------------------------------------------------------------------- Tuber_sp._ex._Epipactis_microphylla_France_AY286191 -------GGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAAAAAAGTATCGGGACCCCCATATC--------------------------------------------------------------CGGTC--------------CCCGAGCTCC-----------AAACCCCTCCGAGTACCCATCCATGTTGCTTTCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGC--CATTGCTGCCTGTC-TG----AC---CATGCCC---------GGTCACAGGACAGAGGTGC-C-TGGGGA-----GGGGCTC---------AAA--CAGA--------------AACTCTAGT-ACAC-ACAGGCTGTCTGAG-TGGGC----C-AT-GTGCCCTGC--AAG--ATTGAACGAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCTT-CTCACGGAT-C----CC--GTGGTAGTGGCGGAAGCTCCA-----------CTGTG-CC--CCTCTGGGCTGCGGTGCA------------GCTCC-GCTGAAATGCAT-AAGCAGGACAAGT-GGG-CCTCAGCG--AGTGACTTAGTAA-GTGTC-TTGAAGAC---GTAGAGCAGTCAGCA-GCTAGGCCATG-C----CCTGCCCACCAGGACTC--CTCCCC-----CATCT----G-----GTGTGAACT---CTT-GGTTGACCTCGGATCAGGTAGGCATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATT-GCCCCAGTAACGGCGAGTGAAGCGGCAA Tuber_sp._ex._Epipactis_microphylla_France_AY286194 -----------------------------------------------TGGTCATTTAGAGGAAGTAAAAGTCGTAA-CAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAG----A----CAAGCCGGGT--------GACGCCAGTG-GGGCGGCCA------------CCCAGAGCACCA----------AACCACAGCTGCGTACAATGCCATGTTGCTTCCCCGGGCCAGCGGCCGTCGCCGCCCGTCGGCGAGACACAGGCGTGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCCG-CGCGGAGGCGC-C-CGGGGGT----G-GGGCTCCCGC----CCCTCAAAACTA-------AAACGTCGGGAG--CATT-GGACTGT--CTGACCTGGGC--CAC-ATTGGGCCGCCGAAAACT-TG---ACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCA-GGGCATGCCTGTCCGAGCGTCAGTGCA--AACCAC-CTCACGGAAAC-----A-CGTGGTGCTGGCGGAGGTGTGGTG---------TCTGA-TCGGGCCGCGATGGCGGCCCGGTCCTCCC----CACCCC-GCCGAAATGTAT-GGGGAGCAACACG-CAT-TGGCGGAC---CCGACTTGGTAGACGCTGTGGTTAGCG---TGGAGC-AGTCGCGGGGCCATTGCTGTCCCTCCCGCCTCGAGCCCGTGGCGGCATCTCCGGGGCATCTCGTCAGGTTTGACCTCGGATCAGGTAGGGGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAGAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAA-GCGGCA-GAGCTCAAATTTGAAATCTGG Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885 --------------------------------------------------------------AGGATCATTAAAAA-GTATCGGGACCCCCATATC--------------------------------------------------------------CGGTC--------------CCCGAGCTCC-----------AAACCCCTC{AC}GAGTACCCATCCATGTTGCTTTCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGC--CATTGCTGCCTGTC-CG----AC---CATGTCC---------GGTCACAGGACAGAGGTGC-C-TGGGGA-----GGGGCTC---------AAA--CAGA--------------AACTCTAGT-ACAC-ACAGGCTGTCTGAG-TGGGC----C-AT-GTGCCCTGC--AAG--ATTGAACGAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCTT-CTCACGGAT-C----CC--GTGGTAGTGGCGGAAGCTCCA-----------CTGTG-CC--CCTCTGGGCTGCGGTGCA------------GCTCC-GCTGAAATGCAT-AAGCAGGACAAGT-GGG-CCTCAGCG--AGTGACTTAGTAA-GTGTC-TTGAAGAC---GTAGAGCAGTCAGCA-GCTAGGCCATG-C----CCTGCCCACCAGGACTC--CTCCCC-----CATCT----G-----GTGTGAACT---CTT-GGTTGACCTCGGATCAGGTAGGCATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTTGCCCCA-GTA------------------ Tuber_sp3_DQ478624_China ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAATGGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTCA-GGGCATGCCTGTTCGAGCGTCACT-AAC-AACCAT-TTCACATT--T----AA-TGTGGTATTGGCTAATGTGG-------------GTAGCACC-T-CCT------GTGCTGGCTCC---------ACTCA-GCTGAAATGGAT-AGGCCAGAGAAGC-AAA-CCATGGCAA--CAGACTCACA-GAGTATG---AGAGTG---CTAAACTAGTCTGTA--GCGGGTAGAACT----CTAC---G--CCATTGGG-CCCC-------CAGTCC---A------TCTACAT-CAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGA------------------------------------------------- Tuber_sp4_DQ478627_China -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACT-AAC-AACCAC-CTCACATGA-A----AA-TGTGGTATTGGCCGAAGTGGATC----------GTACTTGC-----A-------CTGCAGGTCTC--------ACTCA-GCTGAAATCAAT-GGGCCAGAGAAGT-GGA-CCATAGCGA--CAGACTCTCA-GAGTGTTTTTGAAACG---CTAAACTAGTCTCTA--GCAGGTTGAAAT----CTG---AGCCGAT-TGGA-CCCC-------CATTTT---A-----GTCCAAAT-AAGTGA-TGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGG----------------------------------------------- Tuber_sphaerosporum_JT12487_Oregon -----------------------------------------------------------------------------------------------------------------------------------TT--------------------------GGG--------------CTCCCAAGC-------A----AACACATCCATGTGTACTCTCCCATGTTGCTTCCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGG--CCACTGCTGCCAGCC-CAGTTCCC---TAA--T---------AGGTTTCTGGCCTGAGGTGT-C-TGGGGA-----AGGGCTC---------AATATC-AA----------AC--CTTCA---A-ACTA-ATTAGTTGTCTGAC-AAGG----CC-AT-GTGCCGTAA-TCTT--T-AAAACATATT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCTT-CTCACATA--T----AA-TGTGGTATTGGTAGAAGTGA-------------ATAGT-AC-T-ACT-----AGTGCTTTGTCT--------TACTCT-ACTGAAATGAAT-AGGCCAGAAAAGC-GGA-CCATGGTA--ATAGACTCTCA-GAGTGTT-TTAAAATG---CTAAATTAGTCTCG--CCATGGTTGATAT----CTG---AGCCAT--TGGA-CCCC-------CATTT----A-----GTCCAAAC-CAGAGA-G----------------------------------------------------------------------------------------------------------- Tuber_sphaerosporum_JT19772_Oregon -----------------------------------------------------------------------------------------------------------------------------------TCG---------GATCTCCCA----TCGGGG--------------CTCCCAAGC-------A----AACACATCCATGTGTACTCTCCCATGTTGCTTCCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGG--CCACTGCTGCCAGCC-CAGTTCCC---TAA--T---------AGGTTTCTGGCCTGAGGTGT-C-TGGGGA-----AGGGCTC---------AATATC-AA----------AC--CTTCA---A-ACTA-ATTAGTTGTCTGAC-AAGG----CC-AT-GTGCCGTAA-TCTT--T-AAAACATATT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCAT-CTCACATA--T----AA-TGTGGTATTGGTAGAAGTGA-------------ATAGT-AC-T-ACT-----AGTGCTTTGTCT--------TACTCT-ACTGAAATGAAT-AGGCCAGAAAAGC-GGA-CCATGGTA--ATAGACTCTCA-GAGTGTT-TTAAAATG---CTAAATTAGTCTCG--CCATGGTTGATAT----CTG---AGTCAT--TGGA-CCCC-------CATTT----A-----GTCCAAAC-TAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_spinoreticulatum_U188_Maryland_isotype --------------------------------------------------------------GTAAAA-GTCGTAA-CAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAT---------ACATATGT---------GGAACTCCA----AGTGGG--------------TTC?GACACC------A----TGTTAACCTCTGTGTACCGAGCCATGTTGCTTTCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACCTA--CTGTTGGTATCCACC-TGCTCTTC---CCTGCT---------GGGTTGAGCTGTGTGGGTTT-C-CTGGGA-----AAGGTAT---------AATATAAAT----------GC--TAATT---G-TTGA-ACAAGCTGT?TGAG-GAGG----CC-CA-GTGCCGCAT-ATTT--T--GAATAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT?GAATCTTTGAACGCACATTGCGCCTCTTGGTATTCCTTG-AGGCATGCCTGTTCGAGCGTCACAATT--ACCCCT-GTCACGGA--T----CT-CGTGGTGTTGATGGTAGTGGA------------TTCCA-GT-C---------ACTGATGTGTGGCTATAC--TACTCC-AT?GAAATGAAT-AGGGAGGACTACT-GG--CCTCAGCA--ATGGACTTAGT-AAATGTT-TTCAGAAT---GTAAACCAGTCTTGT-GCCAGGTCTGGTC----C-----GGTC?TACTGGATCCCG-------CATCC----A-----ACATGTAT----TCT-GGGTGACCT--------------------------------------------------------------------------------------------------- Tuber_taiyuanense_DQ478637_China --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTGAGGGCATGCCTGTTCGAGCGTCACTGCA--AACCCC-ATCATAGAA------AT-TATGGTATTGATGGAAGTGAA------------CTGAG-CC----------TACCAATATGCCCAGGTT----ACCCC-ATTGAAATGCAT-AGGCAGGACAATT-AA--CCTCTGCA--ATGGACTTAGT-AGCTGTT-TTGAAAAC---ATGAACCAGTCCCTT-GCTAGGTTCCAGC----CTG----GCCTCCACGGA-CCTC-------CATCC----A-----AGATGAAT---TCTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCA----------------------------------------------------------------- Tuber_texense_JT15162_Texas ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-GTCTGTAGTCTGAGTTAGG----CC-TA-GAGCCTAGAACTTTT----AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTTGAGCGTCACTACA--AACCCT-CTCATAGA--T----AT-TATGGTATTGATGGAAGTGAA------------CTGTG-TC----------TACTGGTGTACTCGCAC----CACTCC-ATCGAAATGAAT-AGGCAGGATAGGT-GG--CAACCGCA--AGCGACTTGATAAACGGTT-TTCA-GAC---ATGGACCAGTCCTTT-GTTATGTTGCGCAGC--CTGTA-----TCTATGGA--CTCC------CATCC----AC-------TAAGCAC-TTTG-GGTTGACCTCAAATCAGGTAGGGATACCCGCTGAACTTAAGCA----------------------------------------------------------------- Tuber_whetstonense_JT25783_Oregon_Paratype ------------------------------------------------------------GAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAT------TATAATGCGTGG--------AAATGCCCCTA-ATAAGGG---------------------------------------------------------CATACT------CTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCT--------------------------------------------AA-ACTTACTGTCTGAG-AAGG----CC-AC-GTGCCGTAATCTTT-----AAACATTTT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCCC-ATCATACAA-G----AG-TGTGGTATTGGCAGAAGTGG-------------GTAGG-GC-------TAGCAGTGCTGGTCC---------CACTCT-GCTGGAATGAAT-AGGCCGGAAATGCAGA--CCATGGCA--ACAAACTTTCA-GAGTATT-TTGAAATG---CTAAATTAGTTTGGA--GCTGGTCAGAAT----CCAGGCCAT-----TGGA-CCCC-------CATTC----T-----GTGTAAAG-CAGTAA-TGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCA Tuber_zhongdianense_DQ898186_China -------------------------------------------------------------TGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACA----A----ATGTCTG---------GGATGTCCA----ATCAGG--------------CTCCCAAGTA------A-----ACACATCTATGTGTACTCTTCCATGTTGCTTCCCCAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGG--CCACTGCTGCCAGCC-TAGCCCCT---CACG-----------GGTAATT-GGGCTGAGGTGT-C-TGGGGA-----AGGACCC---------AATATC-AA----------AC--TTTTG---A-ACAA-ATTTGTAGTCTGAG-AAGG----CT-AT-ATGCCGCAA--TTT--TAAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCTT-CTCACAGAA------AA-TGTGGTATTGGTAGAAGTGG-------------GTAGT-AC-TAACAAAT--AGTACTTTGTCT--------TACTCT-ACTGAAATGAAT-AGGCCAGTAAAGC-GGA-CCATGGTA--GTAGACTC-CAGGAGTGTT-GTAAAATG---CTAAACTAGTCTTCA--CCAGGTGTAGATC---CTG---AGCTAAA-TGGACACCC-------CCTTT----A-----GTCCGAAT-CAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATA------------------------------------------------------- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Fig1_ITS_GuideTree) = N: 1-1239; CODONPOSSET CodonPositions (CHARACTERS = Fig1_ITS_GuideTree) = N: 1-1239; END; [ The following blocks are output data for analysis step 10281 ] BEGIN TREES; TITLE Fig1_ITS_GuideTree; LINK TAXA = TaxaForAnalysisStep10281; TREE PAUP_5 = [&R] (Dingleya_sp_JT31575_Australia,Labyrinthomyces_sp_JT27750_Australia,((Reddellomyces_sp_JT27724_Australia,Reddellomyces_sp_JT6873_Australia),((Choiromyces_alveolatus_97,Choiromyces_alveolatus_HS2886),(Choiromyces_meandriformis_DL_Oregon,(Choiromyces_meandriformis_RH691_Iowa,(((((((((((((Tuber_anniae_JT13209_Washington_holotype,Tuber_anniae_JT22695_Oregon),(Tuber_borchii_GB14_Italy,Tuber_borchii_GB1_Italy)),Tuber_separans_JT7697_Oregon,Tuber_menseri_nom_prov_JT11661_Oregon),(Tuber_pacificum_EU837241_Oregon,Tuber_puberulum_AJ969625_Hungary)),(Tuber_asa_M1828_Italy,Tuber_cf_borchii_China),(Tuber_liui_DQ898182_China,Tuber_zhongdianense_DQ898186_China)),(Tuber_californicum_JT28058_California,(Tuber_sphaerosporum_JT12487_Oregon,Tuber_sphaerosporum_JT19772_Oregon))),(Tuber_dryophilum_GB35_Italy,Tuber_dryophilum_GB37_Italy)),((Tuber_latisporum_DQ898185_China,Tuber_sp3_DQ478624_China),Tuber_sp4_DQ478627_China)),((((Tuber_beyeleri_JT32597_Oregon,Tuber_whetstonense_JT25783_Oregon_Paratype),(Tuber_sancarloensis_ITCV181_Mexico_holotype,Tuber_sancarloensis_nom_prov_ITCV885_Mexico)),Tuber_lauryi_nom_prov_JT26987_Oregon),(Tuber_foetidum_AJ557544_Hungary,((Tuber_rapaeodorum_AJ557522_Hungary,Tuber_maculatum_AM406673),(Tuber_shearii_JT12498_North_Carolina,Tuber_shearii_OSC51052_North_Carolina))))),(((Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype,Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype),((Tuber_gibbosum_JT26632_Washington,Tuber_gibbosum_JT30580_Oregon),(Tuber_oregonense_nom_prov_GB284_Oregon_holotype,Tuber_oregonense_nom_prov_JT27985_Oregon_paratype))),(Tuber_castellanoi_nom_prov_JT19924_California_paratype,Tuber_castellanoi_nom_prov_JT28069_California_holotype))),((Tuber_canaliculatum_JT28215_New_Jersey,Tuber_canaliculatum_OSC59072_West_Virginia),Tuber_macrosporum_JT13362_Italy)),(((((((Tuber_brumale_GB21_Italy,Tuber_brumale_GB22_Italy),((((Tuber_indicum_A_GB236_China,Tuber_indicum_A_GB240_China),((Tuber_formosanum_FJ176917,Tuber_indicum_B_GB237_China,Tuber_indicum_B_JT29410_Oregon),Tuber_melanosporum_GB200_Italy)),Tuber_regimontanum_ITCV909_Mexico_holotype),Tuber_pseudoexcavatum_CJ408_China)),(Tuber_sp_RH73_Iowa,Tuber_sp_JT28121_Japan)),Tuber_multimaculatum_OSC62169_Spain_paratype),((((((((Tuber_ferrugineum_MA2721_Italy,Tuber_rufum_GB213_Italy),((Tuber_furfuraceum_FJ176920,Tuber_huidongense_DQ478632_China),Tuber_liaotongense_DQ478645_China),(Tuber_candidum_AY830856_Oregon,Tuber_quercicola_AY918957_Oregon)),Tuber_taiyuanense_DQ478637_China),Tuber_malacodermum_JT32319_Spain),(Tuber_lyonii_GA21_Georgia,(Tuber_lyonii_OSC58244_Texas,Tuber_texense_JT15162_Texas))),Tuber_nitidum_BM105_Spain),Tuber_luomai_JT6003_Oregon_Holotype),Tuber_spinoreticulatum_U188_Maryland_isotype)),((((Tuber_aestivum_JT30500_Sweden,Tuber_sp._ex._Epipactis_microphylla_France_AY286194,Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304),Tuber_mesentericum_CW105_Sweden),Tuber_panniferum_JT12835_Spain),(Tuber_magnatum_JT19460_Italy,Tuber_sp._ex._Angiosperm_Italy_AJ879679,Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687))),((Tuber_excavatum_BM100_Spain,(Tuber_excavatum_OSC80639_Italy,Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885,Tuber_sp._ex._Epipactis_microphylla_France_AY286191)),Tuber_fulgens_M2435_Italy))),((Tuber_gennadii_BM667_Spain,Tuber_gennadii_JT9627_Spain_paratype),Tuber_gennadii_M1904_Italy))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58031] END; BEGIN TREES; TITLE Fig1_ITS_GuideTree; LINK TAXA = TaxaForAnalysisStep10281; TREE PAUP_13 = [&R] (Dingleya_sp_JT31575_Australia,Labyrinthomyces_sp_JT27750_Australia,((Reddellomyces_sp_JT27724_Australia,Reddellomyces_sp_JT6873_Australia),((Choiromyces_alveolatus_97,Choiromyces_alveolatus_HS2886),(Choiromyces_meandriformis_DL_Oregon,(Choiromyces_meandriformis_RH691_Iowa,((((((((((((((Tuber_anniae_JT13209_Washington_holotype,Tuber_anniae_JT22695_Oregon),(Tuber_borchii_GB14_Italy,Tuber_borchii_GB1_Italy)),(Tuber_separans_JT7697_Oregon,Tuber_menseri_nom_prov_JT11661_Oregon)),(Tuber_pacificum_EU837241_Oregon,Tuber_puberulum_AJ969625_Hungary)),(Tuber_liui_DQ898182_China,Tuber_zhongdianense_DQ898186_China)),(Tuber_asa_M1828_Italy,Tuber_cf_borchii_China)),(Tuber_californicum_JT28058_California,(Tuber_sphaerosporum_JT12487_Oregon,Tuber_sphaerosporum_JT19772_Oregon))),(Tuber_dryophilum_GB35_Italy,Tuber_dryophilum_GB37_Italy)),((Tuber_latisporum_DQ898185_China,Tuber_sp3_DQ478624_China),Tuber_sp4_DQ478627_China)),((((Tuber_beyeleri_JT32597_Oregon,Tuber_whetstonense_JT25783_Oregon_Paratype),(Tuber_sancarloensis_ITCV181_Mexico_holotype,Tuber_sancarloensis_nom_prov_ITCV885_Mexico)),Tuber_lauryi_nom_prov_JT26987_Oregon),(Tuber_foetidum_AJ557544_Hungary,((Tuber_rapaeodorum_AJ557522_Hungary,Tuber_maculatum_AM406673),(Tuber_shearii_JT12498_North_Carolina,Tuber_shearii_OSC51052_North_Carolina))))),(((Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype,Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype),((Tuber_gibbosum_JT26632_Washington,Tuber_gibbosum_JT30580_Oregon),(Tuber_oregonense_nom_prov_GB284_Oregon_holotype,Tuber_oregonense_nom_prov_JT27985_Oregon_paratype))),(Tuber_castellanoi_nom_prov_JT19924_California_paratype,Tuber_castellanoi_nom_prov_JT28069_California_holotype))),((Tuber_canaliculatum_JT28215_New_Jersey,Tuber_canaliculatum_OSC59072_West_Virginia),Tuber_macrosporum_JT13362_Italy)),(((((((Tuber_brumale_GB21_Italy,Tuber_brumale_GB22_Italy),((((Tuber_indicum_A_GB236_China,Tuber_indicum_A_GB240_China),((Tuber_formosanum_FJ176917,Tuber_indicum_B_GB237_China,Tuber_indicum_B_JT29410_Oregon),Tuber_melanosporum_GB200_Italy)),Tuber_regimontanum_ITCV909_Mexico_holotype),Tuber_pseudoexcavatum_CJ408_China)),(Tuber_sp_RH73_Iowa,Tuber_sp_JT28121_Japan)),Tuber_multimaculatum_OSC62169_Spain_paratype),((((((((Tuber_ferrugineum_MA2721_Italy,Tuber_rufum_GB213_Italy),((Tuber_furfuraceum_FJ176920,Tuber_huidongense_DQ478632_China),Tuber_liaotongense_DQ478645_China),(Tuber_candidum_AY830856_Oregon,Tuber_quercicola_AY918957_Oregon)),Tuber_taiyuanense_DQ478637_China),Tuber_malacodermum_JT32319_Spain),Tuber_nitidum_BM105_Spain),(Tuber_lyonii_GA21_Georgia,(Tuber_lyonii_OSC58244_Texas,Tuber_texense_JT15162_Texas))),Tuber_luomai_JT6003_Oregon_Holotype),Tuber_spinoreticulatum_U188_Maryland_isotype)),((((Tuber_aestivum_JT30500_Sweden,Tuber_sp._ex._Epipactis_microphylla_France_AY286194,Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304),Tuber_mesentericum_CW105_Sweden),Tuber_panniferum_JT12835_Spain),(Tuber_magnatum_JT19460_Italy,Tuber_sp._ex._Angiosperm_Italy_AJ879679,Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687))),((Tuber_excavatum_BM100_Spain,(Tuber_excavatum_OSC80639_Italy,Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885,Tuber_sp._ex._Epipactis_microphylla_France_AY286191)),Tuber_fulgens_M2435_Italy))),((Tuber_gennadii_BM667_Spain,Tuber_gennadii_JT9627_Spain_paratype),Tuber_gennadii_M1904_Italy))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58039] END; BEGIN TREES; TITLE Fig1_ITS_GuideTree; LINK TAXA = TaxaForAnalysisStep10281; TREE PAUP_8 = [&R] (Dingleya_sp_JT31575_Australia,Labyrinthomyces_sp_JT27750_Australia,((Reddellomyces_sp_JT27724_Australia,Reddellomyces_sp_JT6873_Australia),((Choiromyces_alveolatus_97,Choiromyces_alveolatus_HS2886),(Choiromyces_meandriformis_DL_Oregon,(Choiromyces_meandriformis_RH691_Iowa,(((((((((((((Tuber_anniae_JT13209_Washington_holotype,Tuber_anniae_JT22695_Oregon),(Tuber_borchii_GB14_Italy,Tuber_borchii_GB1_Italy)),Tuber_separans_JT7697_Oregon,Tuber_menseri_nom_prov_JT11661_Oregon),Tuber_pacificum_EU837241_Oregon,Tuber_puberulum_AJ969625_Hungary),(Tuber_asa_M1828_Italy,Tuber_cf_borchii_China),(Tuber_liui_DQ898182_China,Tuber_zhongdianense_DQ898186_China)),(Tuber_californicum_JT28058_California,(Tuber_sphaerosporum_JT12487_Oregon,Tuber_sphaerosporum_JT19772_Oregon))),(Tuber_dryophilum_GB35_Italy,Tuber_dryophilum_GB37_Italy)),((Tuber_latisporum_DQ898185_China,Tuber_sp3_DQ478624_China),Tuber_sp4_DQ478627_China)),((((Tuber_beyeleri_JT32597_Oregon,Tuber_whetstonense_JT25783_Oregon_Paratype),(Tuber_sancarloensis_ITCV181_Mexico_holotype,Tuber_sancarloensis_nom_prov_ITCV885_Mexico)),Tuber_lauryi_nom_prov_JT26987_Oregon),(Tuber_foetidum_AJ557544_Hungary,((Tuber_rapaeodorum_AJ557522_Hungary,Tuber_maculatum_AM406673),(Tuber_shearii_JT12498_North_Carolina,Tuber_shearii_OSC51052_North_Carolina))))),(((Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype,Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype),((Tuber_gibbosum_JT26632_Washington,Tuber_gibbosum_JT30580_Oregon),(Tuber_oregonense_nom_prov_GB284_Oregon_holotype,Tuber_oregonense_nom_prov_JT27985_Oregon_paratype))),(Tuber_castellanoi_nom_prov_JT19924_California_paratype,Tuber_castellanoi_nom_prov_JT28069_California_holotype))),((Tuber_canaliculatum_JT28215_New_Jersey,Tuber_canaliculatum_OSC59072_West_Virginia),Tuber_macrosporum_JT13362_Italy)),(((((((Tuber_brumale_GB21_Italy,Tuber_brumale_GB22_Italy),((((Tuber_indicum_A_GB236_China,Tuber_indicum_A_GB240_China),((Tuber_formosanum_FJ176917,Tuber_indicum_B_GB237_China,Tuber_indicum_B_JT29410_Oregon),Tuber_melanosporum_GB200_Italy)),Tuber_regimontanum_ITCV909_Mexico_holotype),Tuber_pseudoexcavatum_CJ408_China)),(Tuber_sp_RH73_Iowa,Tuber_sp_JT28121_Japan)),Tuber_multimaculatum_OSC62169_Spain_paratype),(((((((Tuber_ferrugineum_MA2721_Italy,Tuber_rufum_GB213_Italy),((Tuber_furfuraceum_FJ176920,Tuber_huidongense_DQ478632_China),Tuber_liaotongense_DQ478645_China),(Tuber_candidum_AY830856_Oregon,Tuber_quercicola_AY918957_Oregon)),Tuber_taiyuanense_DQ478637_China),Tuber_malacodermum_JT32319_Spain),(Tuber_lyonii_GA21_Georgia,(Tuber_lyonii_OSC58244_Texas,Tuber_texense_JT15162_Texas)),Tuber_nitidum_BM105_Spain),Tuber_luomai_JT6003_Oregon_Holotype),Tuber_spinoreticulatum_U188_Maryland_isotype)),((((Tuber_aestivum_JT30500_Sweden,Tuber_sp._ex._Epipactis_microphylla_France_AY286194,Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304),Tuber_mesentericum_CW105_Sweden),Tuber_panniferum_JT12835_Spain),(Tuber_magnatum_JT19460_Italy,Tuber_sp._ex._Angiosperm_Italy_AJ879679,Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687))),((Tuber_excavatum_BM100_Spain,(Tuber_excavatum_OSC80639_Italy,Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885,Tuber_sp._ex._Epipactis_microphylla_France_AY286191)),Tuber_fulgens_M2435_Italy))),((Tuber_gennadii_BM667_Spain,Tuber_gennadii_JT9627_Spain_paratype),Tuber_gennadii_M1904_Italy))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58034] END; BEGIN TREES; TITLE Fig1_ITS_GuideTree; LINK TAXA = TaxaForAnalysisStep10281; TREE PAUP_6 = [&R] (Dingleya_sp_JT31575_Australia,Labyrinthomyces_sp_JT27750_Australia,((Reddellomyces_sp_JT27724_Australia,Reddellomyces_sp_JT6873_Australia),((Choiromyces_alveolatus_97,Choiromyces_alveolatus_HS2886),(Choiromyces_meandriformis_DL_Oregon,(Choiromyces_meandriformis_RH691_Iowa,(((((((((((((Tuber_anniae_JT13209_Washington_holotype,Tuber_anniae_JT22695_Oregon),(Tuber_borchii_GB14_Italy,Tuber_borchii_GB1_Italy)),Tuber_separans_JT7697_Oregon,Tuber_menseri_nom_prov_JT11661_Oregon),(Tuber_pacificum_EU837241_Oregon,Tuber_puberulum_AJ969625_Hungary)),(Tuber_asa_M1828_Italy,Tuber_cf_borchii_China),(Tuber_liui_DQ898182_China,Tuber_zhongdianense_DQ898186_China)),(Tuber_californicum_JT28058_California,(Tuber_sphaerosporum_JT12487_Oregon,Tuber_sphaerosporum_JT19772_Oregon))),(Tuber_dryophilum_GB35_Italy,Tuber_dryophilum_GB37_Italy)),((Tuber_latisporum_DQ898185_China,Tuber_sp3_DQ478624_China),Tuber_sp4_DQ478627_China)),((((Tuber_beyeleri_JT32597_Oregon,Tuber_whetstonense_JT25783_Oregon_Paratype),(Tuber_sancarloensis_ITCV181_Mexico_holotype,Tuber_sancarloensis_nom_prov_ITCV885_Mexico)),Tuber_lauryi_nom_prov_JT26987_Oregon),(Tuber_foetidum_AJ557544_Hungary,((Tuber_rapaeodorum_AJ557522_Hungary,Tuber_maculatum_AM406673),(Tuber_shearii_JT12498_North_Carolina,Tuber_shearii_OSC51052_North_Carolina))))),(((Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype,Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype),((Tuber_gibbosum_JT26632_Washington,Tuber_gibbosum_JT30580_Oregon),(Tuber_oregonense_nom_prov_GB284_Oregon_holotype,Tuber_oregonense_nom_prov_JT27985_Oregon_paratype))),(Tuber_castellanoi_nom_prov_JT19924_California_paratype,Tuber_castellanoi_nom_prov_JT28069_California_holotype))),((Tuber_canaliculatum_JT28215_New_Jersey,Tuber_canaliculatum_OSC59072_West_Virginia),Tuber_macrosporum_JT13362_Italy)),(((((((Tuber_brumale_GB21_Italy,Tuber_brumale_GB22_Italy),((((Tuber_indicum_A_GB236_China,Tuber_indicum_A_GB240_China),((Tuber_formosanum_FJ176917,Tuber_indicum_B_GB237_China,Tuber_indicum_B_JT29410_Oregon),Tuber_melanosporum_GB200_Italy)),Tuber_regimontanum_ITCV909_Mexico_holotype),Tuber_pseudoexcavatum_CJ408_China)),(Tuber_sp_RH73_Iowa,Tuber_sp_JT28121_Japan)),Tuber_multimaculatum_OSC62169_Spain_paratype),((((((((Tuber_ferrugineum_MA2721_Italy,Tuber_rufum_GB213_Italy),((Tuber_furfuraceum_FJ176920,Tuber_huidongense_DQ478632_China),Tuber_liaotongense_DQ478645_China),(Tuber_candidum_AY830856_Oregon,Tuber_quercicola_AY918957_Oregon)),Tuber_taiyuanense_DQ478637_China),Tuber_malacodermum_JT32319_Spain),Tuber_nitidum_BM105_Spain),(Tuber_lyonii_GA21_Georgia,(Tuber_lyonii_OSC58244_Texas,Tuber_texense_JT15162_Texas))),Tuber_luomai_JT6003_Oregon_Holotype),Tuber_spinoreticulatum_U188_Maryland_isotype)),((((Tuber_aestivum_JT30500_Sweden,Tuber_sp._ex._Epipactis_microphylla_France_AY286194,Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304),Tuber_mesentericum_CW105_Sweden),Tuber_panniferum_JT12835_Spain),(Tuber_magnatum_JT19460_Italy,Tuber_sp._ex._Angiosperm_Italy_AJ879679,Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687))),((Tuber_excavatum_BM100_Spain,(Tuber_excavatum_OSC80639_Italy,Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885,Tuber_sp._ex._Epipactis_microphylla_France_AY286191)),Tuber_fulgens_M2435_Italy))),((Tuber_gennadii_BM667_Spain,Tuber_gennadii_JT9627_Spain_paratype),Tuber_gennadii_M1904_Italy))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58032] END; BEGIN TREES; TITLE Fig1_ITS_GuideTree; LINK TAXA = TaxaForAnalysisStep10281; TREE PAUP_10 = [&R] (Dingleya_sp_JT31575_Australia,Labyrinthomyces_sp_JT27750_Australia,((Reddellomyces_sp_JT27724_Australia,Reddellomyces_sp_JT6873_Australia),((Choiromyces_alveolatus_97,Choiromyces_alveolatus_HS2886),(Choiromyces_meandriformis_DL_Oregon,(Choiromyces_meandriformis_RH691_Iowa,(((((((((((((Tuber_anniae_JT13209_Washington_holotype,Tuber_anniae_JT22695_Oregon),(Tuber_borchii_GB14_Italy,Tuber_borchii_GB1_Italy)),Tuber_separans_JT7697_Oregon,Tuber_menseri_nom_prov_JT11661_Oregon),Tuber_pacificum_EU837241_Oregon,Tuber_puberulum_AJ969625_Hungary),(Tuber_asa_M1828_Italy,Tuber_cf_borchii_China),(Tuber_liui_DQ898182_China,Tuber_zhongdianense_DQ898186_China)),(Tuber_californicum_JT28058_California,(Tuber_sphaerosporum_JT12487_Oregon,Tuber_sphaerosporum_JT19772_Oregon))),(Tuber_dryophilum_GB35_Italy,Tuber_dryophilum_GB37_Italy)),((Tuber_latisporum_DQ898185_China,Tuber_sp3_DQ478624_China),Tuber_sp4_DQ478627_China)),((((Tuber_beyeleri_JT32597_Oregon,Tuber_whetstonense_JT25783_Oregon_Paratype),(Tuber_sancarloensis_ITCV181_Mexico_holotype,Tuber_sancarloensis_nom_prov_ITCV885_Mexico)),Tuber_lauryi_nom_prov_JT26987_Oregon),(Tuber_foetidum_AJ557544_Hungary,((Tuber_rapaeodorum_AJ557522_Hungary,Tuber_maculatum_AM406673),(Tuber_shearii_JT12498_North_Carolina,Tuber_shearii_OSC51052_North_Carolina))))),(((Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype,Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype),((Tuber_gibbosum_JT26632_Washington,Tuber_gibbosum_JT30580_Oregon),(Tuber_oregonense_nom_prov_GB284_Oregon_holotype,Tuber_oregonense_nom_prov_JT27985_Oregon_paratype))),(Tuber_castellanoi_nom_prov_JT19924_California_paratype,Tuber_castellanoi_nom_prov_JT28069_California_holotype))),((Tuber_canaliculatum_JT28215_New_Jersey,Tuber_canaliculatum_OSC59072_West_Virginia),Tuber_macrosporum_JT13362_Italy)),(((((((Tuber_brumale_GB21_Italy,Tuber_brumale_GB22_Italy),((((Tuber_indicum_A_GB236_China,Tuber_indicum_A_GB240_China),((Tuber_formosanum_FJ176917,Tuber_indicum_B_GB237_China,Tuber_indicum_B_JT29410_Oregon),Tuber_melanosporum_GB200_Italy)),Tuber_regimontanum_ITCV909_Mexico_holotype),Tuber_pseudoexcavatum_CJ408_China)),(Tuber_sp_RH73_Iowa,Tuber_sp_JT28121_Japan)),Tuber_multimaculatum_OSC62169_Spain_paratype),((((((((Tuber_ferrugineum_MA2721_Italy,Tuber_rufum_GB213_Italy),((Tuber_furfuraceum_FJ176920,Tuber_huidongense_DQ478632_China),Tuber_liaotongense_DQ478645_China),(Tuber_candidum_AY830856_Oregon,Tuber_quercicola_AY918957_Oregon)),Tuber_taiyuanense_DQ478637_China),Tuber_malacodermum_JT32319_Spain),Tuber_nitidum_BM105_Spain),(Tuber_lyonii_GA21_Georgia,(Tuber_lyonii_OSC58244_Texas,Tuber_texense_JT15162_Texas))),Tuber_luomai_JT6003_Oregon_Holotype),Tuber_spinoreticulatum_U188_Maryland_isotype)),((((Tuber_aestivum_JT30500_Sweden,Tuber_sp._ex._Epipactis_microphylla_France_AY286194,Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304),Tuber_mesentericum_CW105_Sweden),Tuber_panniferum_JT12835_Spain),(Tuber_magnatum_JT19460_Italy,Tuber_sp._ex._Angiosperm_Italy_AJ879679,Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687))),((Tuber_excavatum_BM100_Spain,(Tuber_excavatum_OSC80639_Italy,Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885,Tuber_sp._ex._Epipactis_microphylla_France_AY286191)),Tuber_fulgens_M2435_Italy))),((Tuber_gennadii_BM667_Spain,Tuber_gennadii_JT9627_Spain_paratype),Tuber_gennadii_M1904_Italy))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58036] END; BEGIN TREES; TITLE Fig1_ITS_GuideTree; LINK TAXA = TaxaForAnalysisStep10281; TREE PAUP_12 = [&R] (Dingleya_sp_JT31575_Australia,Labyrinthomyces_sp_JT27750_Australia,((Reddellomyces_sp_JT27724_Australia,Reddellomyces_sp_JT6873_Australia),((Choiromyces_alveolatus_97,Choiromyces_alveolatus_HS2886),(Choiromyces_meandriformis_DL_Oregon,(Choiromyces_meandriformis_RH691_Iowa,((((((((((((((Tuber_anniae_JT13209_Washington_holotype,Tuber_anniae_JT22695_Oregon),(Tuber_borchii_GB14_Italy,Tuber_borchii_GB1_Italy)),(Tuber_separans_JT7697_Oregon,Tuber_menseri_nom_prov_JT11661_Oregon)),(Tuber_pacificum_EU837241_Oregon,Tuber_puberulum_AJ969625_Hungary)),(Tuber_liui_DQ898182_China,Tuber_zhongdianense_DQ898186_China)),(Tuber_asa_M1828_Italy,Tuber_cf_borchii_China)),(Tuber_californicum_JT28058_California,(Tuber_sphaerosporum_JT12487_Oregon,Tuber_sphaerosporum_JT19772_Oregon))),(Tuber_dryophilum_GB35_Italy,Tuber_dryophilum_GB37_Italy)),((Tuber_latisporum_DQ898185_China,Tuber_sp3_DQ478624_China),Tuber_sp4_DQ478627_China)),((((Tuber_beyeleri_JT32597_Oregon,Tuber_whetstonense_JT25783_Oregon_Paratype),(Tuber_sancarloensis_ITCV181_Mexico_holotype,Tuber_sancarloensis_nom_prov_ITCV885_Mexico)),Tuber_lauryi_nom_prov_JT26987_Oregon),(Tuber_foetidum_AJ557544_Hungary,((Tuber_rapaeodorum_AJ557522_Hungary,Tuber_maculatum_AM406673),(Tuber_shearii_JT12498_North_Carolina,Tuber_shearii_OSC51052_North_Carolina))))),(((Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype,Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype),((Tuber_gibbosum_JT26632_Washington,Tuber_gibbosum_JT30580_Oregon),(Tuber_oregonense_nom_prov_GB284_Oregon_holotype,Tuber_oregonense_nom_prov_JT27985_Oregon_paratype))),(Tuber_castellanoi_nom_prov_JT19924_California_paratype,Tuber_castellanoi_nom_prov_JT28069_California_holotype))),((Tuber_canaliculatum_JT28215_New_Jersey,Tuber_canaliculatum_OSC59072_West_Virginia),Tuber_macrosporum_JT13362_Italy)),(((((((Tuber_brumale_GB21_Italy,Tuber_brumale_GB22_Italy),((((Tuber_indicum_A_GB236_China,Tuber_indicum_A_GB240_China),((Tuber_formosanum_FJ176917,Tuber_indicum_B_GB237_China,Tuber_indicum_B_JT29410_Oregon),Tuber_melanosporum_GB200_Italy)),Tuber_regimontanum_ITCV909_Mexico_holotype),Tuber_pseudoexcavatum_CJ408_China)),(Tuber_sp_RH73_Iowa,Tuber_sp_JT28121_Japan)),Tuber_multimaculatum_OSC62169_Spain_paratype),((((((((Tuber_ferrugineum_MA2721_Italy,Tuber_rufum_GB213_Italy),((Tuber_furfuraceum_FJ176920,Tuber_huidongense_DQ478632_China),Tuber_liaotongense_DQ478645_China),(Tuber_candidum_AY830856_Oregon,Tuber_quercicola_AY918957_Oregon)),Tuber_taiyuanense_DQ478637_China),Tuber_malacodermum_JT32319_Spain),(Tuber_lyonii_GA21_Georgia,(Tuber_lyonii_OSC58244_Texas,Tuber_texense_JT15162_Texas))),Tuber_nitidum_BM105_Spain),Tuber_luomai_JT6003_Oregon_Holotype),Tuber_spinoreticulatum_U188_Maryland_isotype)),((((Tuber_aestivum_JT30500_Sweden,Tuber_sp._ex._Epipactis_microphylla_France_AY286194,Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304),Tuber_mesentericum_CW105_Sweden),Tuber_panniferum_JT12835_Spain),(Tuber_magnatum_JT19460_Italy,Tuber_sp._ex._Angiosperm_Italy_AJ879679,Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687))),((Tuber_excavatum_BM100_Spain,(Tuber_excavatum_OSC80639_Italy,Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885,Tuber_sp._ex._Epipactis_microphylla_France_AY286191)),Tuber_fulgens_M2435_Italy))),((Tuber_gennadii_BM667_Spain,Tuber_gennadii_JT9627_Spain_paratype),Tuber_gennadii_M1904_Italy))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58038] END; BEGIN TREES; TITLE Fig1_ITS_GuideTree; LINK TAXA = TaxaForAnalysisStep10281; TREE PAUP_7 = [&R] (Dingleya_sp_JT31575_Australia,Labyrinthomyces_sp_JT27750_Australia,((Reddellomyces_sp_JT27724_Australia,Reddellomyces_sp_JT6873_Australia),((Choiromyces_alveolatus_97,Choiromyces_alveolatus_HS2886),(Choiromyces_meandriformis_DL_Oregon,(Choiromyces_meandriformis_RH691_Iowa,((((((((((((((Tuber_anniae_JT13209_Washington_holotype,Tuber_anniae_JT22695_Oregon),(Tuber_borchii_GB14_Italy,Tuber_borchii_GB1_Italy)),(Tuber_separans_JT7697_Oregon,Tuber_menseri_nom_prov_JT11661_Oregon)),Tuber_pacificum_EU837241_Oregon,Tuber_puberulum_AJ969625_Hungary),(Tuber_liui_DQ898182_China,Tuber_zhongdianense_DQ898186_China)),(Tuber_asa_M1828_Italy,Tuber_cf_borchii_China)),(Tuber_californicum_JT28058_California,(Tuber_sphaerosporum_JT12487_Oregon,Tuber_sphaerosporum_JT19772_Oregon))),(Tuber_dryophilum_GB35_Italy,Tuber_dryophilum_GB37_Italy)),((Tuber_latisporum_DQ898185_China,Tuber_sp3_DQ478624_China),Tuber_sp4_DQ478627_China)),((((Tuber_beyeleri_JT32597_Oregon,Tuber_whetstonense_JT25783_Oregon_Paratype),(Tuber_sancarloensis_ITCV181_Mexico_holotype,Tuber_sancarloensis_nom_prov_ITCV885_Mexico)),Tuber_lauryi_nom_prov_JT26987_Oregon),(Tuber_foetidum_AJ557544_Hungary,((Tuber_rapaeodorum_AJ557522_Hungary,Tuber_maculatum_AM406673),(Tuber_shearii_JT12498_North_Carolina,Tuber_shearii_OSC51052_North_Carolina))))),(((Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype,Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype),((Tuber_gibbosum_JT26632_Washington,Tuber_gibbosum_JT30580_Oregon),(Tuber_oregonense_nom_prov_GB284_Oregon_holotype,Tuber_oregonense_nom_prov_JT27985_Oregon_paratype))),(Tuber_castellanoi_nom_prov_JT19924_California_paratype,Tuber_castellanoi_nom_prov_JT28069_California_holotype))),((Tuber_canaliculatum_JT28215_New_Jersey,Tuber_canaliculatum_OSC59072_West_Virginia),Tuber_macrosporum_JT13362_Italy)),(((((((Tuber_brumale_GB21_Italy,Tuber_brumale_GB22_Italy),((((Tuber_indicum_A_GB236_China,Tuber_indicum_A_GB240_China),((Tuber_formosanum_FJ176917,Tuber_indicum_B_GB237_China,Tuber_indicum_B_JT29410_Oregon),Tuber_melanosporum_GB200_Italy)),Tuber_regimontanum_ITCV909_Mexico_holotype),Tuber_pseudoexcavatum_CJ408_China)),(Tuber_sp_RH73_Iowa,Tuber_sp_JT28121_Japan)),Tuber_multimaculatum_OSC62169_Spain_paratype),(((((((((Tuber_ferrugineum_MA2721_Italy,Tuber_rufum_GB213_Italy),(Tuber_candidum_AY830856_Oregon,Tuber_quercicola_AY918957_Oregon)),((Tuber_furfuraceum_FJ176920,Tuber_huidongense_DQ478632_China),Tuber_liaotongense_DQ478645_China)),Tuber_taiyuanense_DQ478637_China),Tuber_malacodermum_JT32319_Spain),Tuber_nitidum_BM105_Spain),(Tuber_lyonii_GA21_Georgia,(Tuber_lyonii_OSC58244_Texas,Tuber_texense_JT15162_Texas))),Tuber_luomai_JT6003_Oregon_Holotype),Tuber_spinoreticulatum_U188_Maryland_isotype)),((((Tuber_aestivum_JT30500_Sweden,Tuber_sp._ex._Epipactis_microphylla_France_AY286194,Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304),Tuber_mesentericum_CW105_Sweden),Tuber_panniferum_JT12835_Spain),(Tuber_magnatum_JT19460_Italy,Tuber_sp._ex._Angiosperm_Italy_AJ879679,Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687))),((Tuber_excavatum_BM100_Spain,(Tuber_excavatum_OSC80639_Italy,Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885,Tuber_sp._ex._Epipactis_microphylla_France_AY286191)),Tuber_fulgens_M2435_Italy))),((Tuber_gennadii_BM667_Spain,Tuber_gennadii_JT9627_Spain_paratype),Tuber_gennadii_M1904_Italy))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58033] END; BEGIN TREES; TITLE Fig1_ITS_GuideTree; LINK TAXA = TaxaForAnalysisStep10281; TREE PAUP_3 = [&R] (Dingleya_sp_JT31575_Australia,Labyrinthomyces_sp_JT27750_Australia,((Reddellomyces_sp_JT27724_Australia,Reddellomyces_sp_JT6873_Australia),((Choiromyces_alveolatus_97,Choiromyces_alveolatus_HS2886),(Choiromyces_meandriformis_DL_Oregon,(Choiromyces_meandriformis_RH691_Iowa,((((((((((((((Tuber_anniae_JT13209_Washington_holotype,Tuber_anniae_JT22695_Oregon),(Tuber_borchii_GB14_Italy,Tuber_borchii_GB1_Italy)),(Tuber_separans_JT7697_Oregon,Tuber_menseri_nom_prov_JT11661_Oregon)),(Tuber_pacificum_EU837241_Oregon,Tuber_puberulum_AJ969625_Hungary)),(Tuber_liui_DQ898182_China,Tuber_zhongdianense_DQ898186_China)),(Tuber_asa_M1828_Italy,Tuber_cf_borchii_China)),(Tuber_californicum_JT28058_California,(Tuber_sphaerosporum_JT12487_Oregon,Tuber_sphaerosporum_JT19772_Oregon))),(Tuber_dryophilum_GB35_Italy,Tuber_dryophilum_GB37_Italy)),((Tuber_latisporum_DQ898185_China,Tuber_sp3_DQ478624_China),Tuber_sp4_DQ478627_China)),((((Tuber_beyeleri_JT32597_Oregon,Tuber_whetstonense_JT25783_Oregon_Paratype),(Tuber_sancarloensis_ITCV181_Mexico_holotype,Tuber_sancarloensis_nom_prov_ITCV885_Mexico)),Tuber_lauryi_nom_prov_JT26987_Oregon),(Tuber_foetidum_AJ557544_Hungary,((Tuber_rapaeodorum_AJ557522_Hungary,Tuber_maculatum_AM406673),(Tuber_shearii_JT12498_North_Carolina,Tuber_shearii_OSC51052_North_Carolina))))),(((Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype,Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype),((Tuber_gibbosum_JT26632_Washington,Tuber_gibbosum_JT30580_Oregon),(Tuber_oregonense_nom_prov_GB284_Oregon_holotype,Tuber_oregonense_nom_prov_JT27985_Oregon_paratype))),(Tuber_castellanoi_nom_prov_JT19924_California_paratype,Tuber_castellanoi_nom_prov_JT28069_California_holotype))),((Tuber_canaliculatum_JT28215_New_Jersey,Tuber_canaliculatum_OSC59072_West_Virginia),Tuber_macrosporum_JT13362_Italy)),(((((((Tuber_brumale_GB21_Italy,Tuber_brumale_GB22_Italy),((((Tuber_indicum_A_GB236_China,Tuber_indicum_A_GB240_China),((Tuber_formosanum_FJ176917,Tuber_indicum_B_GB237_China,Tuber_indicum_B_JT29410_Oregon),Tuber_melanosporum_GB200_Italy)),Tuber_regimontanum_ITCV909_Mexico_holotype),Tuber_pseudoexcavatum_CJ408_China)),(Tuber_sp_RH73_Iowa,Tuber_sp_JT28121_Japan)),Tuber_multimaculatum_OSC62169_Spain_paratype),(((((((((Tuber_ferrugineum_MA2721_Italy,Tuber_rufum_GB213_Italy),(Tuber_candidum_AY830856_Oregon,Tuber_quercicola_AY918957_Oregon)),((Tuber_furfuraceum_FJ176920,Tuber_huidongense_DQ478632_China),Tuber_liaotongense_DQ478645_China)),Tuber_taiyuanense_DQ478637_China),Tuber_malacodermum_JT32319_Spain),Tuber_nitidum_BM105_Spain),(Tuber_lyonii_GA21_Georgia,(Tuber_lyonii_OSC58244_Texas,Tuber_texense_JT15162_Texas))),Tuber_luomai_JT6003_Oregon_Holotype),Tuber_spinoreticulatum_U188_Maryland_isotype)),((((Tuber_aestivum_JT30500_Sweden,Tuber_sp._ex._Epipactis_microphylla_France_AY286194,Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304),Tuber_mesentericum_CW105_Sweden),Tuber_panniferum_JT12835_Spain),(Tuber_magnatum_JT19460_Italy,Tuber_sp._ex._Angiosperm_Italy_AJ879679,Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687))),((Tuber_excavatum_BM100_Spain,(Tuber_excavatum_OSC80639_Italy,Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885,Tuber_sp._ex._Epipactis_microphylla_France_AY286191)),Tuber_fulgens_M2435_Italy))),((Tuber_gennadii_BM667_Spain,Tuber_gennadii_JT9627_Spain_paratype),Tuber_gennadii_M1904_Italy))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58029] END; BEGIN TREES; TITLE Fig1_ITS_GuideTree; LINK TAXA = TaxaForAnalysisStep10281; TREE PAUP_11 = [&R] (Dingleya_sp_JT31575_Australia,Labyrinthomyces_sp_JT27750_Australia,((Reddellomyces_sp_JT27724_Australia,Reddellomyces_sp_JT6873_Australia),((Choiromyces_alveolatus_97,Choiromyces_alveolatus_HS2886),(Choiromyces_meandriformis_DL_Oregon,(Choiromyces_meandriformis_RH691_Iowa,((((((((((((((Tuber_anniae_JT13209_Washington_holotype,Tuber_anniae_JT22695_Oregon),(Tuber_borchii_GB14_Italy,Tuber_borchii_GB1_Italy)),(Tuber_separans_JT7697_Oregon,Tuber_menseri_nom_prov_JT11661_Oregon)),(Tuber_pacificum_EU837241_Oregon,Tuber_puberulum_AJ969625_Hungary)),(Tuber_liui_DQ898182_China,Tuber_zhongdianense_DQ898186_China)),(Tuber_asa_M1828_Italy,Tuber_cf_borchii_China)),(Tuber_californicum_JT28058_California,(Tuber_sphaerosporum_JT12487_Oregon,Tuber_sphaerosporum_JT19772_Oregon))),(Tuber_dryophilum_GB35_Italy,Tuber_dryophilum_GB37_Italy)),((Tuber_latisporum_DQ898185_China,Tuber_sp3_DQ478624_China),Tuber_sp4_DQ478627_China)),((((Tuber_beyeleri_JT32597_Oregon,Tuber_whetstonense_JT25783_Oregon_Paratype),(Tuber_sancarloensis_ITCV181_Mexico_holotype,Tuber_sancarloensis_nom_prov_ITCV885_Mexico)),Tuber_lauryi_nom_prov_JT26987_Oregon),(Tuber_foetidum_AJ557544_Hungary,((Tuber_rapaeodorum_AJ557522_Hungary,Tuber_maculatum_AM406673),(Tuber_shearii_JT12498_North_Carolina,Tuber_shearii_OSC51052_North_Carolina))))),(((Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype,Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype),((Tuber_gibbosum_JT26632_Washington,Tuber_gibbosum_JT30580_Oregon),(Tuber_oregonense_nom_prov_GB284_Oregon_holotype,Tuber_oregonense_nom_prov_JT27985_Oregon_paratype))),(Tuber_castellanoi_nom_prov_JT19924_California_paratype,Tuber_castellanoi_nom_prov_JT28069_California_holotype))),((Tuber_canaliculatum_JT28215_New_Jersey,Tuber_canaliculatum_OSC59072_West_Virginia),Tuber_macrosporum_JT13362_Italy)),(((((((Tuber_brumale_GB21_Italy,Tuber_brumale_GB22_Italy),((((Tuber_indicum_A_GB236_China,Tuber_indicum_A_GB240_China),((Tuber_formosanum_FJ176917,Tuber_indicum_B_GB237_China,Tuber_indicum_B_JT29410_Oregon),Tuber_melanosporum_GB200_Italy)),Tuber_regimontanum_ITCV909_Mexico_holotype),Tuber_pseudoexcavatum_CJ408_China)),(Tuber_sp_RH73_Iowa,Tuber_sp_JT28121_Japan)),Tuber_multimaculatum_OSC62169_Spain_paratype),((((((((Tuber_ferrugineum_MA2721_Italy,Tuber_rufum_GB213_Italy),(Tuber_candidum_AY830856_Oregon,Tuber_quercicola_AY918957_Oregon)),((Tuber_furfuraceum_FJ176920,Tuber_huidongense_DQ478632_China),Tuber_liaotongense_DQ478645_China)),Tuber_taiyuanense_DQ478637_China),Tuber_malacodermum_JT32319_Spain),(Tuber_lyonii_GA21_Georgia,(Tuber_lyonii_OSC58244_Texas,Tuber_texense_JT15162_Texas)),Tuber_nitidum_BM105_Spain),Tuber_luomai_JT6003_Oregon_Holotype),Tuber_spinoreticulatum_U188_Maryland_isotype)),((((Tuber_aestivum_JT30500_Sweden,Tuber_sp._ex._Epipactis_microphylla_France_AY286194,Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304),Tuber_mesentericum_CW105_Sweden),Tuber_panniferum_JT12835_Spain),(Tuber_magnatum_JT19460_Italy,Tuber_sp._ex._Angiosperm_Italy_AJ879679,Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687))),((Tuber_excavatum_BM100_Spain,(Tuber_excavatum_OSC80639_Italy,Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885,Tuber_sp._ex._Epipactis_microphylla_France_AY286191)),Tuber_fulgens_M2435_Italy))),((Tuber_gennadii_BM667_Spain,Tuber_gennadii_JT9627_Spain_paratype),Tuber_gennadii_M1904_Italy))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58037] END; BEGIN TREES; TITLE Fig1_ITS_GuideTree; LINK TAXA = TaxaForAnalysisStep10281; TREE PAUP_4 = [&R] (Dingleya_sp_JT31575_Australia,Labyrinthomyces_sp_JT27750_Australia,((Reddellomyces_sp_JT27724_Australia,Reddellomyces_sp_JT6873_Australia),((Choiromyces_alveolatus_97,Choiromyces_alveolatus_HS2886),(Choiromyces_meandriformis_DL_Oregon,(Choiromyces_meandriformis_RH691_Iowa,(((((((((((((Tuber_anniae_JT13209_Washington_holotype,Tuber_anniae_JT22695_Oregon),(Tuber_borchii_GB14_Italy,Tuber_borchii_GB1_Italy)),Tuber_separans_JT7697_Oregon,Tuber_menseri_nom_prov_JT11661_Oregon),(Tuber_pacificum_EU837241_Oregon,Tuber_puberulum_AJ969625_Hungary)),(Tuber_asa_M1828_Italy,Tuber_cf_borchii_China),(Tuber_liui_DQ898182_China,Tuber_zhongdianense_DQ898186_China)),(Tuber_californicum_JT28058_California,(Tuber_sphaerosporum_JT12487_Oregon,Tuber_sphaerosporum_JT19772_Oregon))),(Tuber_dryophilum_GB35_Italy,Tuber_dryophilum_GB37_Italy)),((Tuber_latisporum_DQ898185_China,Tuber_sp3_DQ478624_China),Tuber_sp4_DQ478627_China)),((((Tuber_beyeleri_JT32597_Oregon,Tuber_whetstonense_JT25783_Oregon_Paratype),(Tuber_sancarloensis_ITCV181_Mexico_holotype,Tuber_sancarloensis_nom_prov_ITCV885_Mexico)),Tuber_lauryi_nom_prov_JT26987_Oregon),(Tuber_foetidum_AJ557544_Hungary,((Tuber_rapaeodorum_AJ557522_Hungary,Tuber_maculatum_AM406673),(Tuber_shearii_JT12498_North_Carolina,Tuber_shearii_OSC51052_North_Carolina))))),(((Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype,Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype),((Tuber_gibbosum_JT26632_Washington,Tuber_gibbosum_JT30580_Oregon),(Tuber_oregonense_nom_prov_GB284_Oregon_holotype,Tuber_oregonense_nom_prov_JT27985_Oregon_paratype))),(Tuber_castellanoi_nom_prov_JT19924_California_paratype,Tuber_castellanoi_nom_prov_JT28069_California_holotype))),((Tuber_canaliculatum_JT28215_New_Jersey,Tuber_canaliculatum_OSC59072_West_Virginia),Tuber_macrosporum_JT13362_Italy)),(((((((Tuber_brumale_GB21_Italy,Tuber_brumale_GB22_Italy),((((Tuber_indicum_A_GB236_China,Tuber_indicum_A_GB240_China),((Tuber_formosanum_FJ176917,Tuber_indicum_B_GB237_China,Tuber_indicum_B_JT29410_Oregon),Tuber_melanosporum_GB200_Italy)),Tuber_regimontanum_ITCV909_Mexico_holotype),Tuber_pseudoexcavatum_CJ408_China)),(Tuber_sp_RH73_Iowa,Tuber_sp_JT28121_Japan)),Tuber_multimaculatum_OSC62169_Spain_paratype),((((((((Tuber_ferrugineum_MA2721_Italy,Tuber_rufum_GB213_Italy),(Tuber_candidum_AY830856_Oregon,Tuber_quercicola_AY918957_Oregon)),((Tuber_furfuraceum_FJ176920,Tuber_huidongense_DQ478632_China),Tuber_liaotongense_DQ478645_China)),Tuber_taiyuanense_DQ478637_China),Tuber_malacodermum_JT32319_Spain),(Tuber_lyonii_GA21_Georgia,(Tuber_lyonii_OSC58244_Texas,Tuber_texense_JT15162_Texas)),Tuber_nitidum_BM105_Spain),Tuber_luomai_JT6003_Oregon_Holotype),Tuber_spinoreticulatum_U188_Maryland_isotype)),((((Tuber_aestivum_JT30500_Sweden,Tuber_sp._ex._Epipactis_microphylla_France_AY286194,Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304),Tuber_mesentericum_CW105_Sweden),Tuber_panniferum_JT12835_Spain),(Tuber_magnatum_JT19460_Italy,Tuber_sp._ex._Angiosperm_Italy_AJ879679,Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687))),((Tuber_excavatum_BM100_Spain,(Tuber_excavatum_OSC80639_Italy,Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885,Tuber_sp._ex._Epipactis_microphylla_France_AY286191)),Tuber_fulgens_M2435_Italy))),((Tuber_gennadii_BM667_Spain,Tuber_gennadii_JT9627_Spain_paratype),Tuber_gennadii_M1904_Italy))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58030] END; BEGIN TREES; TITLE Fig1_ITS_GuideTree; LINK TAXA = TaxaForAnalysisStep10281; TREE PAUP_1 = [&R] (Dingleya_sp_JT31575_Australia,Labyrinthomyces_sp_JT27750_Australia,((Reddellomyces_sp_JT27724_Australia,Reddellomyces_sp_JT6873_Australia),((Choiromyces_alveolatus_97,Choiromyces_alveolatus_HS2886),(Choiromyces_meandriformis_DL_Oregon,(Choiromyces_meandriformis_RH691_Iowa,(((((((((((((Tuber_anniae_JT13209_Washington_holotype,Tuber_anniae_JT22695_Oregon),(Tuber_borchii_GB14_Italy,Tuber_borchii_GB1_Italy)),Tuber_separans_JT7697_Oregon,Tuber_menseri_nom_prov_JT11661_Oregon),(Tuber_pacificum_EU837241_Oregon,Tuber_puberulum_AJ969625_Hungary)),(Tuber_asa_M1828_Italy,Tuber_cf_borchii_China),(Tuber_liui_DQ898182_China,Tuber_zhongdianense_DQ898186_China)),(Tuber_californicum_JT28058_California,(Tuber_sphaerosporum_JT12487_Oregon,Tuber_sphaerosporum_JT19772_Oregon))),(Tuber_dryophilum_GB35_Italy,Tuber_dryophilum_GB37_Italy)),((Tuber_latisporum_DQ898185_China,Tuber_sp3_DQ478624_China),Tuber_sp4_DQ478627_China)),((((Tuber_beyeleri_JT32597_Oregon,Tuber_whetstonense_JT25783_Oregon_Paratype),(Tuber_sancarloensis_ITCV181_Mexico_holotype,Tuber_sancarloensis_nom_prov_ITCV885_Mexico)),Tuber_lauryi_nom_prov_JT26987_Oregon),(Tuber_foetidum_AJ557544_Hungary,((Tuber_rapaeodorum_AJ557522_Hungary,Tuber_maculatum_AM406673),(Tuber_shearii_JT12498_North_Carolina,Tuber_shearii_OSC51052_North_Carolina))))),(((Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype,Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype),((Tuber_gibbosum_JT26632_Washington,Tuber_gibbosum_JT30580_Oregon),(Tuber_oregonense_nom_prov_GB284_Oregon_holotype,Tuber_oregonense_nom_prov_JT27985_Oregon_paratype))),(Tuber_castellanoi_nom_prov_JT19924_California_paratype,Tuber_castellanoi_nom_prov_JT28069_California_holotype))),((Tuber_canaliculatum_JT28215_New_Jersey,Tuber_canaliculatum_OSC59072_West_Virginia),Tuber_macrosporum_JT13362_Italy)),(((((((Tuber_brumale_GB21_Italy,Tuber_brumale_GB22_Italy),((((Tuber_indicum_A_GB236_China,Tuber_indicum_A_GB240_China),((Tuber_formosanum_FJ176917,Tuber_indicum_B_GB237_China,Tuber_indicum_B_JT29410_Oregon),Tuber_melanosporum_GB200_Italy)),Tuber_regimontanum_ITCV909_Mexico_holotype),Tuber_pseudoexcavatum_CJ408_China)),(Tuber_sp_RH73_Iowa,Tuber_sp_JT28121_Japan)),Tuber_multimaculatum_OSC62169_Spain_paratype),(((((((((Tuber_ferrugineum_MA2721_Italy,Tuber_rufum_GB213_Italy),(Tuber_candidum_AY830856_Oregon,Tuber_quercicola_AY918957_Oregon)),((Tuber_furfuraceum_FJ176920,Tuber_huidongense_DQ478632_China),Tuber_liaotongense_DQ478645_China)),Tuber_taiyuanense_DQ478637_China),Tuber_malacodermum_JT32319_Spain),Tuber_nitidum_BM105_Spain),(Tuber_lyonii_GA21_Georgia,(Tuber_lyonii_OSC58244_Texas,Tuber_texense_JT15162_Texas))),Tuber_luomai_JT6003_Oregon_Holotype),Tuber_spinoreticulatum_U188_Maryland_isotype)),((((Tuber_aestivum_JT30500_Sweden,Tuber_sp._ex._Epipactis_microphylla_France_AY286194,Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304),Tuber_mesentericum_CW105_Sweden),Tuber_panniferum_JT12835_Spain),(Tuber_magnatum_JT19460_Italy,Tuber_sp._ex._Angiosperm_Italy_AJ879679,Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687))),((Tuber_excavatum_BM100_Spain,(Tuber_excavatum_OSC80639_Italy,Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885,Tuber_sp._ex._Epipactis_microphylla_France_AY286191)),Tuber_fulgens_M2435_Italy))),((Tuber_gennadii_BM667_Spain,Tuber_gennadii_JT9627_Spain_paratype),Tuber_gennadii_M1904_Italy))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58027] END; BEGIN TREES; TITLE Fig1_ITS_GuideTree; LINK TAXA = TaxaForAnalysisStep10281; TREE PAUP_9 = [&R] (Dingleya_sp_JT31575_Australia,Labyrinthomyces_sp_JT27750_Australia,((Reddellomyces_sp_JT27724_Australia,Reddellomyces_sp_JT6873_Australia),((Choiromyces_alveolatus_97,Choiromyces_alveolatus_HS2886),(Choiromyces_meandriformis_DL_Oregon,(Choiromyces_meandriformis_RH691_Iowa,(((((((((((((Tuber_anniae_JT13209_Washington_holotype,Tuber_anniae_JT22695_Oregon),(Tuber_borchii_GB14_Italy,Tuber_borchii_GB1_Italy)),Tuber_separans_JT7697_Oregon,Tuber_menseri_nom_prov_JT11661_Oregon),Tuber_pacificum_EU837241_Oregon,Tuber_puberulum_AJ969625_Hungary),(Tuber_asa_M1828_Italy,Tuber_cf_borchii_China),(Tuber_liui_DQ898182_China,Tuber_zhongdianense_DQ898186_China)),(Tuber_californicum_JT28058_California,(Tuber_sphaerosporum_JT12487_Oregon,Tuber_sphaerosporum_JT19772_Oregon))),(Tuber_dryophilum_GB35_Italy,Tuber_dryophilum_GB37_Italy)),((Tuber_latisporum_DQ898185_China,Tuber_sp3_DQ478624_China),Tuber_sp4_DQ478627_China)),((((Tuber_beyeleri_JT32597_Oregon,Tuber_whetstonense_JT25783_Oregon_Paratype),(Tuber_sancarloensis_ITCV181_Mexico_holotype,Tuber_sancarloensis_nom_prov_ITCV885_Mexico)),Tuber_lauryi_nom_prov_JT26987_Oregon),(Tuber_foetidum_AJ557544_Hungary,((Tuber_rapaeodorum_AJ557522_Hungary,Tuber_maculatum_AM406673),(Tuber_shearii_JT12498_North_Carolina,Tuber_shearii_OSC51052_North_Carolina))))),(((Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype,Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype),((Tuber_gibbosum_JT26632_Washington,Tuber_gibbosum_JT30580_Oregon),(Tuber_oregonense_nom_prov_GB284_Oregon_holotype,Tuber_oregonense_nom_prov_JT27985_Oregon_paratype))),(Tuber_castellanoi_nom_prov_JT19924_California_paratype,Tuber_castellanoi_nom_prov_JT28069_California_holotype))),((Tuber_canaliculatum_JT28215_New_Jersey,Tuber_canaliculatum_OSC59072_West_Virginia),Tuber_macrosporum_JT13362_Italy)),(((((((Tuber_brumale_GB21_Italy,Tuber_brumale_GB22_Italy),((((Tuber_indicum_A_GB236_China,Tuber_indicum_A_GB240_China),((Tuber_formosanum_FJ176917,Tuber_indicum_B_GB237_China,Tuber_indicum_B_JT29410_Oregon),Tuber_melanosporum_GB200_Italy)),Tuber_regimontanum_ITCV909_Mexico_holotype),Tuber_pseudoexcavatum_CJ408_China)),(Tuber_sp_RH73_Iowa,Tuber_sp_JT28121_Japan)),Tuber_multimaculatum_OSC62169_Spain_paratype),((((((((Tuber_ferrugineum_MA2721_Italy,Tuber_rufum_GB213_Italy),((Tuber_furfuraceum_FJ176920,Tuber_huidongense_DQ478632_China),Tuber_liaotongense_DQ478645_China),(Tuber_candidum_AY830856_Oregon,Tuber_quercicola_AY918957_Oregon)),Tuber_taiyuanense_DQ478637_China),Tuber_malacodermum_JT32319_Spain),(Tuber_lyonii_GA21_Georgia,(Tuber_lyonii_OSC58244_Texas,Tuber_texense_JT15162_Texas))),Tuber_nitidum_BM105_Spain),Tuber_luomai_JT6003_Oregon_Holotype),Tuber_spinoreticulatum_U188_Maryland_isotype)),((((Tuber_aestivum_JT30500_Sweden,Tuber_sp._ex._Epipactis_microphylla_France_AY286194,Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304),Tuber_mesentericum_CW105_Sweden),Tuber_panniferum_JT12835_Spain),(Tuber_magnatum_JT19460_Italy,Tuber_sp._ex._Angiosperm_Italy_AJ879679,Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687))),((Tuber_excavatum_BM100_Spain,(Tuber_excavatum_OSC80639_Italy,Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885,Tuber_sp._ex._Epipactis_microphylla_France_AY286191)),Tuber_fulgens_M2435_Italy))),((Tuber_gennadii_BM667_Spain,Tuber_gennadii_JT9627_Spain_paratype),Tuber_gennadii_M1904_Italy))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58035] END; BEGIN TREES; TITLE Fig1_ITS_GuideTree; LINK TAXA = TaxaForAnalysisStep10281; TREE PAUP_2 = [&R] (Dingleya_sp_JT31575_Australia,Labyrinthomyces_sp_JT27750_Australia,((Reddellomyces_sp_JT27724_Australia,Reddellomyces_sp_JT6873_Australia),((Choiromyces_alveolatus_97,Choiromyces_alveolatus_HS2886),(Choiromyces_meandriformis_DL_Oregon,(Choiromyces_meandriformis_RH691_Iowa,(((((((((((((Tuber_anniae_JT13209_Washington_holotype,Tuber_anniae_JT22695_Oregon),(Tuber_borchii_GB14_Italy,Tuber_borchii_GB1_Italy)),Tuber_separans_JT7697_Oregon,Tuber_menseri_nom_prov_JT11661_Oregon),Tuber_pacificum_EU837241_Oregon,Tuber_puberulum_AJ969625_Hungary),(Tuber_asa_M1828_Italy,Tuber_cf_borchii_China),(Tuber_liui_DQ898182_China,Tuber_zhongdianense_DQ898186_China)),(Tuber_californicum_JT28058_California,(Tuber_sphaerosporum_JT12487_Oregon,Tuber_sphaerosporum_JT19772_Oregon))),(Tuber_dryophilum_GB35_Italy,Tuber_dryophilum_GB37_Italy)),((Tuber_latisporum_DQ898185_China,Tuber_sp3_DQ478624_China),Tuber_sp4_DQ478627_China)),((((Tuber_beyeleri_JT32597_Oregon,Tuber_whetstonense_JT25783_Oregon_Paratype),(Tuber_sancarloensis_ITCV181_Mexico_holotype,Tuber_sancarloensis_nom_prov_ITCV885_Mexico)),Tuber_lauryi_nom_prov_JT26987_Oregon),(Tuber_foetidum_AJ557544_Hungary,((Tuber_rapaeodorum_AJ557522_Hungary,Tuber_maculatum_AM406673),(Tuber_shearii_JT12498_North_Carolina,Tuber_shearii_OSC51052_North_Carolina))))),(((Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype,Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype),((Tuber_gibbosum_JT26632_Washington,Tuber_gibbosum_JT30580_Oregon),(Tuber_oregonense_nom_prov_GB284_Oregon_holotype,Tuber_oregonense_nom_prov_JT27985_Oregon_paratype))),(Tuber_castellanoi_nom_prov_JT19924_California_paratype,Tuber_castellanoi_nom_prov_JT28069_California_holotype))),((Tuber_canaliculatum_JT28215_New_Jersey,Tuber_canaliculatum_OSC59072_West_Virginia),Tuber_macrosporum_JT13362_Italy)),(((((((Tuber_brumale_GB21_Italy,Tuber_brumale_GB22_Italy),((((Tuber_indicum_A_GB236_China,Tuber_indicum_A_GB240_China),((Tuber_formosanum_FJ176917,Tuber_indicum_B_GB237_China,Tuber_indicum_B_JT29410_Oregon),Tuber_melanosporum_GB200_Italy)),Tuber_regimontanum_ITCV909_Mexico_holotype),Tuber_pseudoexcavatum_CJ408_China)),(Tuber_sp_RH73_Iowa,Tuber_sp_JT28121_Japan)),Tuber_multimaculatum_OSC62169_Spain_paratype),(((((((((Tuber_ferrugineum_MA2721_Italy,Tuber_rufum_GB213_Italy),(Tuber_candidum_AY830856_Oregon,Tuber_quercicola_AY918957_Oregon)),((Tuber_furfuraceum_FJ176920,Tuber_huidongense_DQ478632_China),Tuber_liaotongense_DQ478645_China)),Tuber_taiyuanense_DQ478637_China),Tuber_malacodermum_JT32319_Spain),Tuber_nitidum_BM105_Spain),(Tuber_lyonii_GA21_Georgia,(Tuber_lyonii_OSC58244_Texas,Tuber_texense_JT15162_Texas))),Tuber_luomai_JT6003_Oregon_Holotype),Tuber_spinoreticulatum_U188_Maryland_isotype)),((((Tuber_aestivum_JT30500_Sweden,Tuber_sp._ex._Epipactis_microphylla_France_AY286194,Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304),Tuber_mesentericum_CW105_Sweden),Tuber_panniferum_JT12835_Spain),(Tuber_magnatum_JT19460_Italy,Tuber_sp._ex._Angiosperm_Italy_AJ879679,Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687))),((Tuber_excavatum_BM100_Spain,(Tuber_excavatum_OSC80639_Italy,Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885,Tuber_sp._ex._Epipactis_microphylla_France_AY286191)),Tuber_fulgens_M2435_Italy))),((Tuber_gennadii_BM667_Spain,Tuber_gennadii_JT9627_Spain_paratype),Tuber_gennadii_M1904_Italy))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58028] END;