#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on June 13, 2026; 13:31 GMT TreeBASE (cc) 1994-2008 Study reference: Risede J., & Simoneau P. 2001. Typing Cylindrocladium species by analysis of ribosomal DNA spacers polymorphism: application to field isolates from the banana rhizosphere. Mycologia, 93(3): 494-504. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S687] [ The following blocks are input data for analysis step 1041 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1041; DIMENSIONS NTAX=16; TAXLABELS Curvicladium_cigneum_MUCL40269 Cylindrocladiella_camelliae_MUCL31395 Cylindrocladiella_parva_MUCL636 Cylindrocladium_citri_CBS_18636 Cylindrocladium_floridanum_ATCC18882 Cylindrocladium_floridanum_ATCC22677 Cylindrocladium_gracile_ATCC22833 Cylindrocladium_pseudogracile_PPRI4176 Cylindrocladium_pteridis_IMI354530 Cylindrocladium_sp._Dom4_MT2 Cylindrocladium_sp.Slu2_MT1 Cylindrocladium_spathiphylli_ATCC44730 Cylindrocladium_spathiphylli_IMI167983 Cylindrocladium_spathulatum_ATCC62616 Fusarium_sambucinum Xenocylindrocladium_serpens_MUCL39315 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2642] TITLE ITS; LINK TAXA = TaxaForAnalysisStep1041; DIMENSIONS NCHAR=410; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Curvicladium_cigneum_MUCL40269 CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTCAAACGTTCCCTCGGCGG---------TGTCCCGCGCTCCGGCAAGG-GCCCGCCAGAGGACCCAACAAACTCTTT-GTATTTCAATCTAGTATCTTCTGAGTGAAAACAAACAATAAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTCTTCT--GGCTTGGTGTTGGGGATCGGCACGGGCGCCCTCAGGGGCGCT--GCCGTTCCCCCAAATCTAGTGGCGG Cylindrocladiella_camelliae_MUCL31395 CAGAGTTTACAACTCCCAAACCCC-TGTGAACT-TACCATGT-CGTTGCCTCGGCGG---------TGTCTT--GCTTCGGCGA---GCCCGCCAGAGGACCCAACAAACTCTT--GTTTTT----TTAGTATTATCTGAGTGACAAGTT-TAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAACCCCC----GGGTTTGGTGTTGGAGATCGACA-TGAAGCCCTTCTGGGTGTGAAGTCGT-CTCCCAAATATAGTGGCGG Cylindrocladiella_parva_MUCL636 CCGAGTTTACAACTCCCAAACCCC-TGTGAACTATACCTTTA-CGTTGCCTCGGCGG---------CGTCC---GCTTCGGCG----GCCCGCCAGAGGACCCAA---ACTCTT--GTATTTGAATTGAGTATTCTCTGAGTGATACAAG-CAATAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCC----GGGCTTGGTGTTGGAGATCGGCA-ACTGCCCCTTGCGGGTGC---GCCGT-CTCCCAAATCTAGTGGCGG Cylindrocladium_citri_CBS_18636 CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GAAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTGAAAAAAA-CAATAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTC-------AGCTTGGTGTTGGGGATCGGCA-AGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATTTAGTGGCGG Cylindrocladium_floridanum_ATCC18882 CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCACCTTCGGGAGCTTGGTGTTGGGGATCGGCA-GGGCGTCCTTCGGGTCGC---GCCGT-CCCCCAAATTTAGTGGCGG Cylindrocladium_floridanum_ATCC22677 CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTAAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCACCTTCGGGAGCTTGGTGTTGGGGATCGGCA-GGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATCTAGTGGCGG Cylindrocladium_gracile_ATCC22833 CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTC-------AGCTTGGTGTTGGGGATCGGCA-GGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATTTAGTGGCGG Cylindrocladium_pseudogracile_PPRI4176 CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTC-------AGCTTGGTGTTGGGGATCGGCA-GGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATTTAGTGGCGG Cylindrocladium_pteridis_IMI354530 CCGAGTTTACAACTCCCAAAACCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTC-------AGCTTGGTGTTGGGGATCGGCA-GGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATTTAGTGGCGG Cylindrocladium_sp._Dom4_MT2 CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATATTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCT-------GCTTGGTGTTGGGGATCGGCA-AGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATATAGTGGCGG Cylindrocladium_sp.Slu2_MT1 CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTGAAAAAAAACAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTC-------AGCTTGGTGTTGGGGATCGGCA-GGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATTTAGTGGCGG Cylindrocladium_spathiphylli_ATCC44730 CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCT-------GCTTGGTGTTGGGGATCGGCA-AGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATATAGTGGCGG Cylindrocladium_spathiphylli_IMI167983 CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATATTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCT-------GCTTGGTGTTGGGGATCGGCA-AGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATATAGTGGCGG Cylindrocladium_spathulatum_ATCC62616 CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTAAAAAACA--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTC-------AGCTTGGTGTTGGGGATCGGCA-AGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATTTAGTGGCGG Fusarium_sambucinum CCGAGTTTACAACTCCCAAACCCC-TGTGAAC-ATACCTTAA-TGTTGCCTCGGCGGATCAGCCCGCGCCCCGTAAAAC-GGGACG-GCCCGCCAGAGGACCCAA---ACTCTAATGTTTCT---TATTGTAACTTCTGAGTAAAACAAACAAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCTGGTATTCCGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCC----GGGTTTGGTGTTGGGGATCGGCT---CTGCCCTTCTGGCGGT---GCCGC-CCCCGAAATACATTGGCGG Xenocylindrocladium_serpens_MUCL39315 CCGAGTTTACAACTCCCAAACCCAATGTGAACTATACCTGTT-CGTTCCCTCGGCGG---------TGTTCGCTGCTTCGGCAGAG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATCT---TT-AGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGACGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAATTCCTCTTTTGGGATTGGTGTTGGGGATCGGCA-AGGCGACCTTCGGGCCGC---GCCGT-CCCCTAAATCTAGTGGCGG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS) = N: 1-410; CODONPOSSET CodonPositions (CHARACTERS = ITS) = N: 1-410; END; [ The following blocks are output data for analysis step 1041 ] BEGIN TREES; TITLE Tb5817; LINK TAXA = TaxaForAnalysisStep1041; TREE Fig._2 = [&R] (((((((((((Cylindrocladium_pteridis_IMI354530,Cylindrocladium_sp.Slu2_MT1),Cylindrocladium_pseudogracile_PPRI4176),Cylindrocladium_gracile_ATCC22833),(Cylindrocladium_floridanum_ATCC18882,Cylindrocladium_floridanum_ATCC22677)),Cylindrocladium_spathulatum_ATCC62616),Cylindrocladium_citri_CBS_18636),((Cylindrocladium_spathiphylli_IMI167983,Cylindrocladium_sp._Dom4_MT2),Cylindrocladium_spathiphylli_ATCC44730))Cylindrocladium,Xenocylindrocladium_serpens_MUCL39315),Curvicladium_cigneum_MUCL40269),(Cylindrocladiella_camelliae_MUCL31395,Cylindrocladiella_parva_MUCL636)),Fusarium_sambucinum); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3712] END;