#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 14, 2026; 16:53 GMT TreeBASE (cc) 1994-2008 Study reference: Lehtonen S., Wahlberg N., & Christenhusz M. 2012. Diversification of lindsaeoid ferns and phylogenetic uncertainty of early polypod relationships. Botanical Journal of the Linnean Society, 170: 489-503. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13345] [ The following blocks are input data for analysis step 10415 ] BEGIN TAXA; TITLE TaxaForAnalysisStep10415; DIMENSIONS NTAX=35; TAXLABELS Adiantum_raddianum Asplenium_nidus 'Athyrium filix-femina' Blechnum_brasiliense Cheilanthes_tomentosa Cyathea_poeppigii Cystodium_sorbifolium Cystopteris_fragilis Davallia_solida_ssp._fejeensis Dicksonia_antarctica Didymochlaena_truncatula Dryopteris_filix_mas Lindsaea_blotiana Lindsaea_multisora Lindsaea_parasitica Lindsaea_plicata Lindsaea_quadrangularis Lonchitis_hirsuta Loxoma_cunninghamii Metaxya_rostrata Microlepia_speluncae Nephrolepis_biserrata Nesolindsaea_kirkii Odontosoria_aculeata Odontosoria_chinensis Osmolindsaea_odorata Polypodium_vulgare Pteridium_aquilinum Rumohra_adiantiformis Saccoloma_elegans Saccoloma_inaequale Sphenomeris_clavata Tapeinidium_luzonicum Tectaria_incisa Thelypteris_palustris ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M15224] TITLE psbA_unaligned; LINK TAXA = TaxaForAnalysisStep10415; DIMENSIONS NCHAR=494; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Adiantum_raddianum CCGCCCCTTTCGCCATTTGTTTTGTTAAGGGGCTAATGTGAACAAAATTCATCTCTTAAGCTAGAGAAATTCTTTCATTGAGAACCATCCATATTAACTGCATGTATTTAACAAAACACTATAGAATCTTCGAAATGGGGGATGTACTCCCAACTCGTTCTACCCAAAAGATTGAAGGGTTACAAGCATTCAGTGAGTCAAAATAGTAACTCCTTTCAATTAGAAAATCCCGAAGGGATATTACAACTCTTTGTTTTTTTTTTTCAATTCGAGGTGGGAATTGATGACCGTGAGATTGTGACAGGCCGTTATCCTTCCTTTTTCGTTCTATTACACGAAACTTCCTTTTCATTGGATACCAAACTCTATCTTCCAAAGTTGAAGGGTTTGGTATCCAGTTGTGCTGCGTAACCAAACGGATATTATCCGTTTATAGAGGGGGCTTCGACAGAAGCT-------------------------------------- Asplenium_nidus CCGCCCCCTCTGTTGATTTAGCTGGCCCCCCCCCCTGCCGGACGGGAACGAAATCTATCTGTTAAGAAAGCTAGATAGGTTCTTCGATTGATAGACATACATATTAACTGTATGTATATAACAAGACAATAGGGAATATTTGAAATGAGGAATACACTCTCAATCCTTTTATACAAATGGGGTGATGGATTGCGATCATTCCGCAAATCGGAGTAGATTACGAAGTAATCTAGTAAATCCCAGAGGGATATTCCAAATGCTTTTCGAAATTCAAGGTTAGATACTTAGAGTCATAAAATTGTGACAAGCTGTTATCCTCTTTTCCATACGTTCTATCGCACAAACCTTTACTTCATTGGACACCAAATCTCCCCCTCTGAAGGTGAGAGACCTGGTATCCACTTGTGCTGCATAACCAGACGGATATTACCCGTTTATAGAAGGAGCTTCAACGGAAGCC---------------------------------- 'Athyrium filix-femina' CCGCCCCCTCTGTTGATTTAGTTGGCCCCCCCCCCCGGACGTGAACGAGATCTATCCGTTAAGCAAGCTAGATAGGTTCTTCGGTTGATACACATACATATTAACTTTACGTATATAACAAGACAATAGAAAATCTTTGAAATGAGGAACGCAATCTCAATTTTTTTTATCCGAAAAGAGAAAATTGGGTTGGGGGGTTGCAAGCATTCCGCAAATCGGAGTAGGAAACTTCGTAATCTATTAAATCCCAGAAGGATATTCCAAATAGTTTTCAGAATTCAAGGTTGGAAACTGATAATCGTGAAATTGTGACAAGCTGTTATCGTCCTTTCCATTCGTTCTACCGCACGAACCTTCACCTCATTGGACACCAAACCTCCTCCTCTGGAGTTAAGAGATTTGGTATCCAGTTGTGCTACATAACCAGACGGATATTATCCGTTTATAGAAGGAGC?????????????-------------------------- Blechnum_brasiliense CCGCCCCTTCTGTTGATTTACCGCTGATTTAGTTGGGGGCTCCCCCCCCCCCGGACGTGAACGAGATCTATCCGTTAAGCAAGCTAGATAGGTTCTTCGGTTGATACACATACATATTAACTTCACGTATATAACGAGACAATAGAAAATTTTTGAAATGAGGAATGCAATCTCAATTTTTTTTTTATCCAAAAAATTAGGGTGTTGGGGTGGGGGATTACAAGCATTCTGCAAATCGGGGTGGGAAACTTCGTAATCTATCAAATCGCAGAAGGATATTCCAAATACAAATAGCTTTCAGAATTCAAGGTTGGAAACTGATAATCGTGAAATTGTGACAAGCTGTTATCATCCTTTCCATTTGTTCTACTGCACGAACCTTCACCTCATTGGACACCAAACCTCCCCCTCTGGAGTTAAGAGATTTGGTATCCAGTTGTGCTACATAACCAGACGGATATTATCCGTTTGTAGAAGGAGCTTCAACAGAAGCC Cheilanthes_tomentosa CCGCCCCCTTTGTTATTTGTTTTTGTTAAGGGGCTCCCCTCCCCGAATGTGAACAAGATCCATCCTTTAAGCTAGATAGATTCTTCGGTTGATACACATCCATATTAACTGCATATATATAACAAGACAACAGAGAATCTGTAAAATGAAGAATGTACTCCCAACTCTTTCTACCCAAAAGATTGAAAGGCTACAAGCATTCAGCGAATCGGAATAGTCACTCTTTTCAAGAGTGAAATCTCAGAAGGATATTCCAACTCTTCTTTCTCCTCAATTCAAGGTGGGAAACTGGTGACCGTGAGATTGTGACAGGCCGTTATTCTCCCCTCTTTTCGTTCTACCGTAGGAACCTTCCCTTTTCATTGGACACCAAACTCCATCTTCCGAAGTTGAAGGGTTTGGTATCCAGTTGTGCTGCATAACCAGACGGCAATTATCCGTTTATAGAAGGGGCTTCGACAGAAGCT--------------------------- Cyathea_poeppigii -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cystodium_sorbifolium CCGCCCCCTCTGTTACTCGGTTCTCTGAACGTGAAAGAAGGGAACAAGATCTATCTGTTAAGCTAGATGGGTCTTTCGATCGATAGACATACAAATTAACTGTGTGTATAACAAGACAATCGGAAATCTGTGAAATCAAGACTGTACTCCCAATTTCTTTTATCCAACCCAAAGGATTGGGAGATTACAAGCATTCTGTGAATCGGAATAGAAATGTTCTTAATACATTTAATCGTATAAGGATGGATATTATCAATATCCATTTTGGAAACTGATGATTGCGAGATTACGACAAACCATTCTTATTCTTTCATTATTTTTTTCGAGTCGTTCTATTGGATGAACTCTCACTTCATTGGACACCAAACCTTCTGAAGTTAGAAGATTTGGTGTCCAGTTATGCTGAATAACCAGACAGATACTATCCGTTTATAGAAGGAGCTTCAACAGAAGCT--------------------------------------- Cystopteris_fragilis CCGCCCCTCTGTTGATTTAGTTGGCCCCCCCCCCCGGACGGGAACGAGATCTATCCGTTAAGCAAGCTAGATAGGTTCTTTGGTTGATACATATACATATTAGCTGTATGTATATAACAAGACAATAGAAAATCTTTGAAATGGGGAATGCGCTATCAATTTCTTTTATCCAAAAGATTGGGGTGGGAGATTGGAAGCATTCTGCAAATCGGAGTGGGAAATATTGTAATCTATTAAATCGCAGAGGGATATTCCAAATAGTTTTCAGAATTCAAGGTTGGAAACTGATAATTGTGAAATTATGACAAGCTGTTATCATCCTTTCCATTCGTTCCACCGCACGAACCTTCACCTCATTGGACACCAAACCTCCTCCTCCGAAGTTAAGAGATTTGGTATCCAGTTGTGCTGCATAACCAGACGAATATTATCCGTTTATAGAAGGAGCTTCGACAGAAGCC--------------------------------- Davallia_solida_ssp._fejeensis CCGCCCCCTCTGTTGATCTGTTTGACTCCCCCCCGGACGTGAACGAGATCTATCCGTTAAGCAAGCTAGATAGGTCCTTCCTTCGGTTGATACACATACGTATTAACTGTATTTATATGACAATACAATAGAAAATCTTTGAAATAAGGAATGCACTACTTCCTTTCCGTTATTCAAAAGACAAAAGTGGGGGTTTACAAACATTCCGCAAATCAGAATAGGAAACTTCGTAATCTATTAAATTGCAGAAGGATATTGCAGATAGTTTTCAGAATTCAAGGTTGGAAACTGATAATCATGAAATTGTGAGAAGCTGTTACCTTTCTTTTTCCATTCTTTATATCGCACGAACCTTCATCTCATTGGACACCAAACCTCCCCCTCTGAAGTTGAGAGGTTTGGCATCCAGTTGTGCTGGATAACCATACGGGTGTTATCCGTTTATAGAAGGAGCTTCAACAGAAGCC--------------------------- Dicksonia_antarctica CCGCCCCCTCTGCTACTGGGCTCCCTGAACGTGAAAGGGAACAGGATCTATCTATTAAGCTATTAGGGTCCTTCGATTGATACACATACATATTAGTTGTGTATATAACGAGACAATAGGAAATCTGTGAAATGAAGAACGTACTCCCGCTCTATTCAAATGATTGGTAGATTACAAGCATTCTGTGAATCGGAATAGTAATATTTTTACTATCTATAGCCACAGAAGAGTATTCTAAAGATTCTTCAGAATTCAAGATTGGGAACTGATGATTGTAAGATTCTGACAAACCATTACCATTCTCTTTATTCGTTTTATTGAACGAACCCTCATTGGACACCAAACCTTTTAAAGCTAAAAGGTTTGGTATCCGGTTATACTGCATAACCAGACAGATATTATCCGTTTATAGAAGGAGCTTCAACAGAAGCT-------------------------------------------------------------- Didymochlaena_truncatula CCGCCCCCTCTGTTGACTTAGTTGGCCCCCCCCCGGACGTGAACGAGATCTATCCGTTAAGCAAGCTAGATAGGTCCTTCGGTTGATACACATACATATTCACTGTATGTATATAGCAAGACAATAGAAAATCTTTGTCTTTGAAATGAGGAATGCACTCCTTCTTTTATCCAAAAGATTAGGGTGGGAGATTACAAGCAAGCATTTTGCAAATCAGAATAGGAAACTTTGTAATCTATTAAATCGCAGAAGGATATTCCAAATAGTTTTCAAAATTCAAGCTTGCAAACTGATAATCGTGAATTTGTGACAAGCTGTTATCATTCTTTCCATTCGTTATACCGAATGGACCTTCACCTCATTGGACACCAAACCTCCTTCTCTGAAGTTAAGAGATTTGGTATCCAGTTGTGCTGCATAACCAGACGGATGTTATCCGTTTATAGAAGGAGCTTCAACGGAAGCT---------------------------- Dryopteris_filix_mas CCGCCCCCTCTGTTGATTTAGTTGGCTCCCCACCGGACGTGAACAAGATCTATCCGTTAAGCAGTCTAGATAGGTCCTTCGGTTGATACACATACATATTAGCTGTATGTATATAGCAAGACAATAGAAAATCTTTGAAATGAGGAATACACTCCTTCTTTTATCCAAAAGATTGGGGTGGGAGATTACAAGCATTCTGCAAATCGGAATAGGAAACTTCGTAATCTATTAAATCGCAGAGGGATATTCCAAATAGTTTTCAGAATTTAAGGTTGGAAACTGATAATCGTGAAATTGTGAGAAGCTGCTACCATTCCTTTCATTCGTTCCACCGCACGAACTTTCATCTCATTGGACACCAAACCTCCCCTGAAGTTGAGAGATTTGGTATCCAGTTGTGCTGCATAACCAGACGGATGTTATCCGTTTACAGAAGGAGCTTCAAA???????----------------------------------------- Lindsaea_blotiana CCGCCCCCTTTGTTACCCGGCTCTTTAAAAAAGAAGAAAATCGGGAACAAGATCTATCTGTTAAGCAAGATAGGTCCTTCGGTTGATACAATACAAATTAATCGATGTATAGGTATAACAGGATAAAATCTGCGAAATGAGGAATGGGCTTTGAATCCTTTTTATTCAAAGCATTGGGGGATTACAGGCATTCCGCAAATCAGAATAGGCATCTTCTTCTTAATAGATTTCACTGTAGAAGAATATTCCATATATTCTTCAGAATTAAAGATTGGAAACTGATGATTGTAAGATTGTGACAAACCACCCTGATTCTTTTTAGCCGTTGATTCTTTTTAGCCGTTATATCGAATGAACTCTTCCTTTTACTTCATTGGATACCAAACCTTTCCTTTTGAAGTGAAAAGGTTTGGTATCCAGTTATGCTGCAGAACGAGACAAAACTATTATCCGTTTATAGAAGGAGCCTCGACAGAAGCT-------------- Lindsaea_multisora CCGCCCCCTTTGTTACTCGGCAGAAGAAAGTCGGGAACAAGATCTATCTGTTATGTTAAGCAAGATAGGTCCTTCGGTTGATATAATACAAACGAATCGATGTATAGGTATAACAGGAGAAAATCTGCGAAATGAGGAATGGGCTTTGAATCCTTTTTATTCAAAGCATTGGGGGATTACAGGCATTCCGCAAATCGGAATAGGCATCTTCTTCTTAAGAGATTTCACTGTAGAAGAATATCCCATATATTCTTCAGAATTAAAGATTGGAAACTGAGAATTGTAAGATTGTGACAAACCACCCTGATTCTTTTTAGCCGTTATATCGGATGAACTCTTCCCTTTACTTCATTGGATACCAAACCTTTCCTTTTGAAGTTAAAAGGTTTGGTATCCAGTTATGCTGCAAAACGAAACAAAACTATTATCCGTTTATAGAAGGAGCCTCGACAGAAGCT------------------------------------ Lindsaea_parasitica CCGCCCCCTTTGTTACTCGGCAGAAGAAAGTCGGGAACAAGATCTATCTGTTAAGCAAGATAGGTCCTTCGGTTGATACAATACAAATGAATCGATGTATAGGTATAACAGGAGAGAATCTGCGAAATGAGGAATGGGCTTTGAATCCTTTTTATTCAAAGCATTGGGGGATTACAGGCATTCCGCAAATCAGAATAGGCATCTTCTTCTTAAGAGATTTCACTGTAGAAGAATATTCCATATATTCTTCAGAATTCAAGATTGGAAACTGAGAATTGTAAGATTGTGACAAACCACCCTGATCCTTTTTAGCCGTTATATCGGATGAACTCTTACCTTTGCTTCATTGGATACCAAACCTTTCCTTTTGAAGTTAAAAGGTTTGGTATCCAGTTATGCTGCGAAACGAGACAAAACTATTATCCGTTTATAGAAGGAGCCTCGACAGAAGCC----------------------------------------- Lindsaea_plicata CCGCCCCCTTTGTTACTCGGCTCTTTAAAAGAGAAGAAAGCCAGGAACAAGATCTATCTGTTAAGGCAGATAGGTCTTTCGGTTGATACAATACAAATTAATCGATGTATAGGTATAACAGGATAAGATCTGCGAAATGAGGAATGGGCTCTTAATCCTTTTTTTTATTCAAAAATTGGGGGATTACAGGCATTCCGAAATCAGAATAGGCATCTTCTTAATATATTTCACTGTAGAATAATATTCTACATACATTCTTCAGAATTAAAGATTGGAAACTGATGATTGTAAGATTGTGACAAACCACCCTGATTCTTTTTAGTCGTTATATCGGATGTTCATTGGATACCAAACCCTTCTTTTGGAGTTAAAAGGTTTGGTATCCAGTTATGCTGCAGAACTGGATAAAACTATTATCCGTTTATAGAAGGAGCTTCGATAGAAGCT----------------------------------------------- Lindsaea_quadrangularis CCGCCCCCTTTGTTACCCGGCTCTTGAAAAAAGAAGAAAATCGGGAACAAGATCTATCTGTTAAGCAAGATAGGTCCTTCGGTTGATACAATACAAATTAATCGATGTATAGGTATAACAGGAGAAAATCTGCGAAATGAGGAATGGGCTTTGAATCCTTTTTATTCAAAGCATTGGGGGATTACAGGCATTCCGCAAATCAGAATAGGCATCTTCTTCTTAATAGATTTCACTGTAGAAGAATATTCCATATATTCTTCAGAATTAAAGATTGGAAACTGATAATTGTAAGATTGTGACAAACCACCCTGATTCTTTTTAGCCGTTATATCGAATGAACTCTTCCCTTTACTTCATTGGATACCAAACCTTTCCTTTTGAAGTTCAAAGGTTTGGTATCCAGTTATGCCGCAGAACGAGACAAAACTATTATCCGTTTATAGAAGGAGCCTCGACAGAAGCT------------------------------- Lonchitis_hirsuta CCGCCCCCTCTGTTACTTGGCTCTTTGAACGTGAGAGCGGGGAACAAGGCCTATATATTTCTATTTATATATTTCTATTAAGGTAGATAGGTTATTCGATTGACAAACATACGAATCAACCGTGTATATAACGAGACAGTGCAAAATTTGTGAAATGAGCAATTTAATCCCAATCTCTTTTATCCAAAAGGGTTGGATAAATTACAAACATCCTGCAAATCAATATATAATTTTTTTTTTAATCTACCTGCGAGGGGATATTCTAACTATTTAGAATAGTTCAATTTGGGATTGAAAACTGATGATTGTAAGATTATGGCAAGACATTATTACTCTTTCCAGTCGTTCTATCGGACGGACTCTTGCTTCTTTTTTCTTCTTTTATCTTCTCGCATTATCGGACACCAAACCTTCTAAAAAAGGTTTGGTATCCAGTTATGCTGCGTAAACAGACAGATATTATCCGTTTATAGAAGGAGCTTCAACAGAAGCT- Loxoma_cunninghamii -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Metaxya_rostrata CCCCCCGGCTTGCTACTGGGCCCCCTGAACGTGAAAAGGAACAGGATCTATCTATTAAACTATTAGGGCCCTTCGATCGATACACATACATATTAGTTGTGTATATAACGAGATAAGAAGAAATCTGTGAAATGAATAACGTACCCCCACTCTATTCTACAAATGGTTGATAGGTTACAAGCGTTCTGTGAAACGGAATAGGAATATTTCTAATAGATGTATATCTATAGAGATAGATAGCCGCAGAAGAGTATTCTAAATATTATCCAGAATTCAAAATTGAGAACTGATGATTGCGAGATTCTCACAAACCATTACCATTCTTTTTATTCGTTCTATCCAGCGAACTTGGATACCAAACCTTTTACTAAAGGTTTGGTATCCAGTTATACTGCATAACCAGACAGATATTATCCGTTTATAGAAGGAGCTTCAGCAGAAGCT-------------------------------------------------- Microlepia_speluncae CCGCCCCCTCTGCTAATTGGCTCCCCGAACGTGAACAAGATCCATCCATTAATATAGATAATACAGATAGGTCCTTCGATTGATCCACATAAATATTAACTGTATGTATATAGCAAGACAGCAGAAAATTTGTGAAATGAAAATTGCACCCCCAATTTAGTTGATCCAGAAGATCTCTTGGAAGATTGCAAGCATTCTGTGAATCAGAATAGAAAACTTTCTAATCTGTCAAATCCCGGAAGAATATTCCAAATATTTCATTTTTCAGAGTTCAAGGTTGGAAATTGATGATCGTGAGGTCGTGACAAGTCATTATCGTCCTCTTCATTCGTTCTCCCGTACGAACCTTCACTTCATTGAATACCAAACCTTCTTCGTCCGAAGTTAAAAGGTTTGGTATCCAGTTATGCTGTATAACCAGACGGGTATTATCCGTTTGTAGAAGGAGCTTCAACAGAAGCT-------------------------------- Nephrolepis_biserrata CCGCCCCTCTGTTTTTTTATTTGGCCCCCCCGAACGAGATTTATCCGTTAAGCAAGCTAGATAGGTCTTTCGGTTGATACACATACATATTAACTGTATTTCTAGAACAAGACAATAGAAAATCTTTGAAATGAGGGAGAAATGCATTCCTTCTTTTTATTTTATCCAAAATATTGGGGTGGGTGGGGGGGGGGGGTTACAAACATTCTGTAAATCGGACTAGGAAACTTCGTAATCTATTAAATCGCAGAAGGATATCCCAAATAGTTTTTAGAATTCAAAGTTGAAAACTGATAATCATGAAATTGTGACAAGCTCTTATTCTTTTTTTTTTCATTCGCTCTGCCGCACGAACCTTCATTTCATTGGACACCAAACCTCTTAGAGGTTTGGTGTCCAGTTGTGCTGCATAACCAGATGGGTGTTACCCGTTTATAGAAGGAGCT?CAACAGAAGCC------------------------------------ Nesolindsaea_kirkii CCGCCCTCTTCATTATTTGGCTCTTTGAAAAAAGAGAGCCGGGAACGAGATCTATCTGTTAAGCTAGATAAGTCCTTCGATTGATACACATACACATGAATCGGTGTATAGATACAACAGGAAAAAGATCTGCGAAATGAGGAATGGGCTCTTAATCTTTTTTATCCAAAGCAAAGGATTGGGGGAATATGGGCATTCTGCGAATCATAGTAGGAATCTTCTTAATACTTAATATATTTCACTGTAGAAAAATGTTTCATATAGTCTTCAGAATTCAAGCTTGGAAACTGATGATTGTAAGATTGTGACAAACCACCCTGATCATTTTTAGTCGTTATATCGGACTAACTCTTTCCTTTACTTGAT?GGATACCAAACCTTTTCTTTTGAAGTTAAAAGGTTTGGTATCCAGTTATGCTGCAGAACCAGACAAAAAGATTATCCGTTTATAGAAGGAGCTTCCACAGAAGCT---------------------- Odontosoria_aculeata CCGCCCCCTTTGTTACTCGGCTCTTTAAAAAAGAAAGTATGGAACAAGATCTATCTGTTAAGTTAGATAAGTCCTTCGATTGATACAATACAAATTAATCGGTGTATAGATATAACAGGAGAAAATCTGCGAAATGAGGAATGGGCTTTCAATCCCATTTCTTCAAAATATTGGGGGATTACAGACATTCCGCAAATCAGAATAGGCATCTTCTTTTCTTAATAGATTTCACTGTAGAATAATATTCTACATATATTCTTCAGAATTCAAGATTGGAAACTGATGATTGTAAGATTGTGACAAACCACCCTGATGATTTTTAGTCGTTATATCGGACGAACTCTTTCCTTTACTTGATTGGATACCAAACCTTTTCTTTTGGAGTTAAAAGGTTTGGTATCCAGTTATGCTGCAGAACCAGACAAAACTATTATCCGTTTATAGAAGGAGCTTCGACAGAAGCT------------------------------ Odontosoria_chinensis CCGCCCTCTTCGTTACTCGGCTCTTTAAAAAAGAAAGCCGGGAACAAGATCTATCTGTTAAGCTAGATAAGTCCTTCGACTGATACAATACAAATTAATCGGTGTATAGATATAACAGGAGAAAATCTGCGAAATGAGGAATGGGCTTTGAACCCCATTTTATTTGTTCAAAATATTGGGGGATTACAGACATTCCGCGAATCAGAATAGGCATCTTCTAAATAGATTTCACTGTAGAATAATATTCTCTATATCTTCTTCAGAATTCAAGATTGGAAACTGATGATTGTAAGATTGTGACAAACCACCCTGATTTTTTATAGTCGTTATATCGGACGAATTCTTCCCTTTACTTGATTGGATACCAAACCTTTTTGTTTGGAGTTCAAAGGTTTGGTATCCAGTTATGCTGCAGAACCAGACAAAACTATTATCCGTTTATAGAAGGAGCTTCGACAGAAGCT------------------------------ Osmolindsaea_odorata CCGCCCCCTTCGTTACTCGGCTCTTTAAAAAGTCGGGAACGAGATCTATCTGTTAAGCTAGATAAGCCCTTCGATTGATACACATACACATGAATCGGTGTATAGATACAACAGGAAAAAATCTGTGAAATGAAGGAATGGGCTCTTAATCCTTTTTATTTATTCAAAAGAAAAGATTGGGGGAATACGGGCATTCTGCGAATCATAATAGGAATCTTATTACTAATTAATAAATAGATTTCACTGTCGAATAATATTCCATATAGTCTTCAGAATTCAAGCTTGGAAACTGATGATTGGAAGATTGTGACAAGTCACCCTGATTCTTTTTAGTCGTTATATCGGACAAGCGCTTCCCTTTCCTTGATTGGATACCAAACCTTTTCTTTTGGAGTTAAAAGGTTTGGTATCTAGTTATGCTGCAGAACCAGATAAAAAGATTATCCGTTTATGGAAGGAGCTTCGACAGAAGCT-------------------- Polypodium_vulgare CCGCCCCCTCTGTTGATTTATTTGACTCCCCCCGGACGTGAACGAGATCTATCCGTTAAGCAAGCTAGATAGGTCCTTCGGTTGATACACATCCATATTAACTGTATTTCTATGACAAGACAATAGAAAATCTTTGAAATGAGGAATGCACTCCTTCCTTTCCGTTCTTCAAAAGATTGGGGTGGGAGTTTACAAACATTCCGCAAATTAGAATAGGAAACTTCGTAATCTATTAAATCGCAGAAGGATATTGCAAATAGTTTTCAGAATTCAAGGAAACTGATAATCATGAAATTGTGAAAAGCTGTTACCACTTTTTCCACCCTTTATACCGCACGAATCTTCATATCATTGGACACCAAACCTCCCCCTTTGAAGAGAGATTTGGCATCCAGTTGTGCTGGATAACCATACAGGTGTTATCCGTTTATAGAAGGAGCTTCAACAGAAGCC----------------------------------------- Pteridium_aquilinum CCGCCCCCTCTCTCTGTTAATTGACTCTCCGAACGTGAACAAGATCCATCCGTTAAGCTAGATAGATACGTCTTTCGATTGATACACATACATATTATGTGTATGTATATAACAAGACAATAGAAAATTTACGAAATGAGGAATGTACTCCCAATTTATTTGATCCATAAGGTTGGTAGATTACAAGCATTCTGTAAATCAGAATAGAAAACTTCCTAATCTATTAAAACCCAGTTAAAGGATATTCCAACTATTTTTCAGAGTTCAAGGTTGGAAACTGATGATCGTGAGATTCTGACAAGCCATTGTACTCTTCTCTATTCGTTCTGCCGTACGAACCTTCACTTCATTGAATACCAAACCTTCTCTTCCGAAGTTAAAAGGTTTGGTATCCAGTTATGCTGCATAACCAGACGGATATTATCCGTTTATAGAAGGAGCTTCAACAGAAGCT---------------------------------------- Rumohra_adiantiformis CCGCCCCTCTGTTTATTTAGTTGGCTCCCCCCCCCCCCCCGGACGTGAACGAGATCTACCCGTTAGGCAAGCTAGATAGGTCCCTCGGTTGATACACATACATATTAGCCGTATGTATATAGCAAGACAATAGAAAATAGAAAATATTCGAAATGAGGAATACACCCCTCCTTTTATCCAAAAGGTTGGGGTGGGAGATTACAAGCATTCTGCAAATCGGAATGGGAAACTTTGCAATCTATTAGATTGCAGAAGGATATTCCAAATAGTTTTCAGAATTCAAGGTTGGAAACTGATAATCATGAGATTATGATAAGCTGTTATCATTCTTTCCATTCGTTCTACCGCACGAACCTTTATCTCATTGGACACCAAACCTCCTCCTCTGAAGTTGAGAGATTTGGTATCCAGTTGTGCTGCATAACCAGACGGATGTTATCCGTTTATAGAAGGAGCTTCA?????????------------------------- Saccoloma_elegans CCGCCCCCTTTTTTTACTTGGCTCCCTGACCCTAAGAGACAAGATCTATCTGTTAAGATAGCTAGGTCCTTCGATTGATACACATACATATTAGCTGTGTATATAGCGAGACAATAGAAAATCTGTGAAATTTCCAAATCTCTTTTATCCAAAAGATTGGGAGATTACAAGCATCCTGTGAATCAGGATAGAACAATTCTTTCCTTTCTAATCTATTCTATCCCAGAAGGATATTATAAATATTCTTCAGAATTCAAGATTGGAAACCGATGATTGTAAGATCATGAAAAACCGCTATCATTTTTCCTATTCGAGAAATCAGACGAACCTTCACTTCCACTTCATTGGACACCAAACCTTCTGAAGTTAAAAGGTTTGGTATCCATCTGTGCTGCATAACCAGACAGATATTATCCGTTTATAGAAGGAGCTTCAACAGAAGCT-------------------------------------------------- Saccoloma_inaequale CCGCCCCCTTTTTTTACTTGGCTCCCTGACCCTAAGAGACAAGATCTATCTGTTAAGATAGCTAGGTCCTTCGATTGATACACATACATATTAGCTGTGTATATAGCGAGACAATAGAAAATCTGTGAAATTTCCAAATTTCTTTTATCCAAAAGATTGGGAGATTACAAGCATCCTGTGAATCAGGATAGAACAATTCTTTGTTTTTTAATCTATTCTATCCCAGAGGGATATTATATATATTCTTCATAATTAAAGATTGGAAACCGATGATTGTAAGATCATGAAAAACCGCTATCATTTTTCCTATTCGAAAAATCAGACGAACCTTCACTTCATTGGACACCAAACCTTCTGAAGTTAAAAGGTTTGGTATCCATTTGTGCTGCATAACCAGACAGATATTATCCGTTTATAGAAGGAGCTTCAACAGAAGCT-------------------------------------------------------- Sphenomeris_clavata CCGCCCCCTTCGTTACTCGGCTCTTGAAAAAAAGAAAGCCGGGAACAAGATCTATCTGTTAAGCTAGATAGGTCCTTCGATTGATACACATACAAATTAATCGGTGTATAGATACAACAGGAAAAAATCTGCGAAATGAGGAATGGGCTTTTCATCCCTTTTATCCGAAAGATTGGGAATTACAGGCATTCCGCGAATCAGAAGAGAAATCTTCTTCAGAATTCAAGATTGGAAACTGAGAATTGTAAGATTGTGACAAACCAATCTCAACCTGATTCTTTTTAGTCCTTATCTCGGACGAACTCTTCTCTTTACTTGATTGGATACCAAACCTTTTAACTGCAAAAGAAAAGGTTTGGTATCCAGTTATGCTGCAGAACCAGACAAAAAGATTATCCGTTTATAGAAGGAGCTTCGACAGAAGCT-------------------------------------------------------------------- Tapeinidium_luzonicum CCGCCCCCTTCATTACTCGGTTCTTTAAAAAAGAAAGCCGGGAACGAGATCTATCTGTTAAGCTAGATAAGTCCTTCGATTGATACACATACACATGAATCGGTGTATAGATACAACAGGAAAAAAATATGCGAAATGAGCAATGGGCTTTTAATCCCTTTTTATCCAAAGTATTGGGGGAATACGGGCATTCTGCGAATCATAATAGGAATCTTCTTAACTTAATATATTTCCTTAATATATTTCACTGTAGAAGAATATTCCATATAGTCTTTAGAATTCAAGCTTGGAAACTGAGAATTGTAAGGTTGTGACAAACCATCCTAATTCTTTTTAGTCGTTATATCGGACGAACCCTTCCCTTTACTTGATTGGATACCAAACCCTTTCTTTTGGAGTTAAAAGGTTTGGTATCCAGTTATACTGCAGAACTAGACAAAAAGATTATCCGTTTATAGAAGGAGCTTCGACAGAAGCT---------------- Tectaria_incisa CCGCCCCCTCTGTTGATTTATTTGACTCCCCCCGAACGGGAACGAGATCTATCCGTTCAGCAAGCTAGATAGGTCCTTCGGTTGATACACATACATATTAACTGTATTTATATGACAAGACAATAGAAAATCTTTGAAATGAGGAATGCACTCCTTCCTCTCCGTTATTCAAAAGATTGGGGTGGGGGTTTACAAGCATTCCACAAATCAGAATAGGAAACTTCGTAATCTATTAAATCACGGAAGGATATTCCAAATAGTTTTCATAATTCAAGGTTGGAAACTGATAATCATGAAATTGTGAGAAGCTGTTACCATTTTCTTCCATTCTTTATACCGCACGAGCCTTCATCTCATTGGACACCAAACCTCCCCCTCTGAAGTTGAGAGATTTGGCATCCAGTTGTGCTGCATAACCATACGGGTGTTATCCGTTCATAGAAGGAGCTTCAACAGAAGCC--------------------------------- Thelypteris_palustris CCGCCCCCTCTGTCGATTTAGTTGGCTCCCCTCCCCCCCGGACGTGAACGAGATCTATCCGTTAAGCAAGCTAGATAGGTTCTTCGGTTGATACACATACATATTGACTTCATGTACAAGACAATAGAAAATCTTTGAAATGAGGAATGCACTCTCAATTTCTTTTATCCAAAAGATTGAGGTGGGAGATTACAAGCATTCTGCAAATCGGAGTAAGAAACTTCGTAATCCATCAAATCGCAGAAGGATATTCCAAATAGTTTTCAGAATTCAAGGTTGGAAACTGATAATCGTGAAATTGTGACAAGCTGTTATCATCCTTTCCATTCGTTCTACCGCACGAACCTTCACCTCGTTGGACACCAAACCTCCTCCTCCGGAGTTAAGAGATTTGGTATCCAGTTGTGCTACATAACCAGGAGGATATTATCCGTTTGTAGAAGGAGCTTCGACAGAAGCC---------------------------------- ; END; [ The following blocks are output data for analysis step 10415 ] BEGIN TREES; TITLE results; LINK TAXA = TaxaForAnalysisStep10415; TREE psbA_parsimony = [&R] (Metaxya_rostrata,(Dicksonia_antarctica,(Lonchitis_hirsuta,Cystodium_sorbifolium,(Sphenomeris_clavata,((Tapeinidium_luzonicum,Nesolindsaea_kirkii,Osmolindsaea_odorata),(Odontosoria_chinensis,(Odontosoria_aculeata,(Lindsaea_plicata,((Lindsaea_multisora,Lindsaea_parasitica),(Lindsaea_blotiana,Lindsaea_quadrangularis))))))),((Saccoloma_elegans,Saccoloma_inaequale),((Pteridium_aquilinum,Microlepia_speluncae),(Adiantum_raddianum,Cheilanthes_tomentosa),((Didymochlaena_truncatula,(Dryopteris_filix_mas,Rumohra_adiantiformis)),(Nephrolepis_biserrata,(Tectaria_incisa,(Davallia_solida_ssp._fejeensis,Polypodium_vulgare))),((Cystopteris_fragilis,Asplenium_nidus),(Thelypteris_palustris,(Blechnum_brasiliense,'Athyrium filix-femina'))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr59019] END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M15223] TITLE psbA_aligned; LINK TAXA = TaxaForAnalysisStep10415; DIMENSIONS NCHAR=798; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Adiantum_raddianum CCGCCCC--TTT-CGCCAT---T-----TG--TTTTGTT---AA------GG-------G-G-----C-T----------------A-ATGTGAACAA-A-------A--TT--------CA--TC-----TCTTAAGCTAG---AG--AAAT--------T-CTTTCATTGAGAACCATCCATATTAA-CTGCATGTATTTA-ACAAAACACT-ATAGAAT-----C-T-T-C----GAAATG-G--G-G-GATGTACTC-C-CAA--C--T-------C-G-T-T---CTA-CCC---------A-----AA----A-----G--------A-T--------T------GA-AGGGTT---A-CAAGCATTCAGTGAGTC-AAAATA--GTAA--C--T---------C--------C------T--------T-T-CAAT-TAG--------AAAATC---C-C--GAA-GGGATA-TT--A-----C-AA-C-TCTTTG-T-TTTTTTTTTTCAATTCGA-----GGTGGG-AATTGATGACCGTGAGATTGTGAC-AG--G-CC---G-------TT---------A---------TC--C-T--TCCT-T--TTTCGTTCTATTACAC-GA-----A-------A-------CT-T--CC----T-T-T-T--CA-T-T-GGATACCAAA-CTCT-ATC---T-TC-CAAAGTTGAAGGGTTTGGTATCCAGTTGTGCTGCGTAACCAAAC--GGATATTATCCGTTTATAGAGGGGGCTTCGACAGAAGCT Asplenium_nidus CCGCCCC--C-T-C-TG-----T-----TG-ATTTAGCT---GG--C--CCC-------C-C-----C-C-----C-C-TGCCG--G-ACGGGAACGA-A-------A--TC--------TA--TC-----TGTTAAGAAAG---CT--AGATA-GG----TTCTTCGATTGATAGACATACATATTAA-CTGTATGTATATA-ACAAGACAAT-AGGGAAT-----A-T-T-T----GAAATG-A--G-G-AATACACT--CTCAA-----T-------C-C-T-T---TTA-T-----------A-----CA----A--------------A-T---G-GGGT------GA-TGGATT---G-CGATCATTCCGCAAATC-GGAGTA--G-AT--T--A---------C--------G------A--------A-G-TAATCTAG-----T--AAATCC---C-A--GAG--GGATA-TT--C-----C--A-A--A-------T-GCTTTTCGAAATTCAA-----GGTTAGATACTTAGAGTCATAAAATTGTGAC-AA--G-CT---G-------TT---------A---------TC--C-T-CTTTTCC--ATACGTTCTATCGCAC-AA-----A-------C-------CT-T---T----A-C-T-T--CA-T-T-GGACACCAAATCTCC--CC---C-TC-TGAAGGTGAGAGACCTGGTATCCACTTGTGCTGCATAACCAGAC--GGATATTACCCGTTTATAGAAGGAGCTTCAACGGAAGCC 'Athyrium filix-femina' CCGCCCC--C-T-C-TG-----T-----TG-ATTTAGTT---GG-----CCC-------C-C-----C-C-----C-C---CCG--G-ACGTGAACGA-G-------A--TC--------TA--TC-----CGTTAAGCAAG---CT--AGATA-GG----TTCTTCGGTTGATACACATACATATTAA-CTTTACGTATATA-ACAAGACAAT-AGAAAAT-----C-T-T-T----GAAATG-A--G-G-AACGCAAT--CTCAA--T--T-------T-T-T-T---TTA-TCC---GA----A-----AA-G--A-----G----AAA-ATT---G-GGTT------GG-GGGGTT---G-CAAGCATTCCGCAAATC-GGAGTA--G-GA--A--A---------C--------T------T--------C-G-TAATCTAT-----T--AAATCC---C-A--GAA--GGATA-TT--C-----C--A-A--A-------T-AGTTTTCAGAATTCAA-----GGTTGGAAACTGATAATCGTGAAATTGTGAC-AA--G-CT---G-------TT---------A---------TC--G-T-CCTTTCC--ATTCGTTCTACCGCAC-GA-----A-------C-------CT-T---C----A-C-C-T--CA-T-T-GGACACCAAACCTCC--TC---C-TC-TGGAGTTAAGAGATTTGGTATCCAGTTGTGCTACATAACCAGAC--GGATATTATCCGTTTATAGAAGGAGC????????????? Blechnum_brasiliense CCGCCCCTTC-TGT-TG--ATTTACCGCTG-ATTTAGTTGGGGG---CTCCC-------C-C-----C-C-----C-C---CCG--G-ACGTGAACGA-G-------A--TC--------TA--TC-----CGTTAAGCAAG---CT--AGATA-GG----TTCTTCGGTTGATACACATACATATTAA-CTTCACGTATATA-ACGAGACAAT-AGAAAAT-----T-T-T-T----GAAATG-A--G-G-AATGCAAT--CTCAATTT--T-------T-T-T-T---TTA-TCC-----AAA-A-----AA--TTA-GG--G-------TGTT---G-GGGT------GG-GGGATT---A-CAAGCATTCTGCAAATC-GGGGTG--G-GA--A--A---------C--------T------T--------C-G-TAATCTAT-----C--AAATCG---C-A--GAA--GGATA-TT-CCAAATAC--A-A--A-------T-AGCTTTCAGAATTCAA-----GGTTGGAAACTGATAATCGTGAAATTGTGAC-AA--G-CT---G-------TT---------A---------TC--A-T-CCTTTCC--ATTTGTTCTACTGCAC-GA-----A-------C-------CT-T---C----A-C-C-T--CA-T-T-GGACACCAAACCTCC--CC---C-TC-TGGAGTTAAGAGATTTGGTATCCAGTTGTGCTACATAACCAGAC--GGATATTATCCGTTTGTAGAAGGAGCTTCAACAGAAGCC Cheilanthes_tomentosa CCGCCCC--CTT-TGTTAT---T-----TGT-TTTTGTT---AA------GG-------G-GCTCCCC-T-----C-C---CCG--A-ATGTGAACAA-G-------A--TC--------CA--TC-----CTTTAAGCTAG---AT--AGAT--------T-CTTCGGTTGATACACATCCATATTAA-CTGCATATATATA-ACAAGACAAC-AGAGAAT-----C-T-G-T----AAAATG-A--A-G-AATGTACTC-C-CAA--C--T-------C-T-T-T---CTA-CCC---------A-----AA----A-----G--------A-T--------T------GA-AAGGCT---A-CAAGCATTCAGCGAATC-GGAATA--GTCA--C--T---------C--------T------T--------T-T-CAA--GAG-----T--GAAATCT--C-A--GAA--GGATA-TT--C-----C-AA-C-TC-----T-TCTTTCTCCTCAATTCAA-----GGTGGGAAACTGGTGACCGTGAGATTGTGAC-AG--G-CC---G-------TT---------A---------TT--C-T-CCCCTCT--TTTCGTTCTACCGTAG-GA-----A-------C-------CT-T-CCC----T-T-T-T--CA-T-T-GGACACCAAA-CTCC-ATC---T-TC-CGAAGTTGAAGGGTTTGGTATCCAGTTGTGCTGCATAACCAGAC--GGCAATTATCCGTTTATAGAAGGGGCTTCGACAGAAGCT Cyathea_poeppigii ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Cystodium_sorbifolium CCGCCCC--C-----TC-----------T---GTTACTC---GG------TT-------C-T-----C-T---GAA-C---GTGAAAGAAGGGAACAA-G-------A--TC--------TA--TC-----TGTT----AAG---CT--AGAT-GGG----TCTTTCGATCGATAGACATACAAATTAA-CTG--TGTGTATA-ACAAGACAAT-CGGAAAT-----C-T-G-T----GAAATC-A--A-G-ACTGTACT-CC-CAA--T--T-------T-C-T-T---TTA-TCC--------AA--CCCAA----A---G-G--------A-T--------T------GG-GAGATT---A-CAAGCATTCTGTGAATC-GGAATA--G--A--A--A-------T-G--------T------T--------C-T-TAATACAT-----T---TAATC-G-T-A--TAA---GG-A-----------T--G-G--A-------T-ATT-ATCA-ATATCCA-----TTTTGGAAACTGATGATTGCGAGATTACGAC-AA--A-CC---A----TTCTT---------A--TTC--TTTC--ATTATTTTTTTCGAGTCGTTCTATTGGAT-GA-----A-------C------TC--T---C----A-C-T-T--CA-T-T-GGACACCAAA----C---C---T-TC-TGAAGTTAGAAGATTTGGTGTCCAGTTATGCTGAATAACCAGAC--AGATACTATCCGTTTATAGAAGGAGCTTCAACAGAAGCT Cystopteris_fragilis CCG-CCC--C-T-C-TG-----T-----TG-ATTTAGTT---GG-----CCC-------C-C-----C-C-----C-C---CCG--G-ACGGGAACGA-G-------A--TC--------TA--TC-----CGTTAAGCAAG---CT--AGATA-GG----TTCTTTGGTTGATACATATACATATTAG-CTGTATGTATATA-ACAAGACAAT-AGAAAAT-----C-T-T-T----GAAATG-G--G-G-AATGCGCT--ATCAA--T--T-------T-C-T-T---TTA-TCC---------A-----AA----A-----G--------ATT---G-GGGT------GG-GAGATT---G-GAAGCATTCTGCAAATC-GGAGTG--G-GA--A--A---------T--------A------T--------T-G-TAATCTAT-----T--AAATCG---C-A--GAG--GGATA-TT--C-----C--A-A--A-------T-AGTTTTCAGAATTCAA-----GGTTGGAAACTGATAATTGTGAAATTATGAC-AA--G-CT---G-------TT---------A---------TC--A-T-CCTTTCC--ATTCGTTCCACCGCAC-GA-----A-------C-------CT-T---C----A-C-C-T--CA-T-T-GGACACCAAACCTCC--TC---C-TC-CGAAGTTAAGAGATTTGGTATCCAGTTGTGCTGCATAACCAGAC--GAATATTATCCGTTTATAGAAGGAGCTTCGACAGAAGCC Davallia_solida_ssp._fejeensis CCGCCCC--C-T-C-TG-----T-----TG-ATCTGTTT---GA------CTC--------C-----C-C-----C-----CCG--G-ACGTGAACGA-G-------A--TC--------TA--TC-----CGTTAAGCAAG---CT--AGATA-GGTCCTTCCTTCGGTTGATACACATACGTATTAA-CTGTATTTATATG-ACAATACAAT-AGAAAAT-----C-T-T-T----GAAATA-A--G-G-AATGCACT--A-C----T--T-------C-CTT-TCCGTTA-TTC---------A-----AA----A-----G--------ACA---A-AAGT------GG-GGGTTT---A-CAAACATTCCGCAAATC-AGAATA--G-GA--A--A---------C--------T------T--------C-G-TAATCTAT-----T--AAATTG---C-A--GAA--GGATA-TT--G-----C--A-G--A-------T-AGTTTTCAGAATTCAA-----GGTTGGAAACTGATAATCATGAAATTGTGAG-AA--G-CT---G-------TT---------A---------CCTTT-C-TTTTTCC--ATTCTTTATATCGCAC-GA-----A-------C-------CT-T---C----A-T-C-T--CA-T-T-GGACACCAAACCTCC--CC---C-TC-TGAAGTTGAGAGGTTTGGCATCCAGTTGTGCTGGATAACCATAC--GGGTGTTATCCGTTTATAGAAGGAGCTTCAACAGAAGCC Dicksonia_antarctica CCGCCCC--C-----TC-----------T---GCTACTG---GG------CT-------C-C-----C-T---GAA-C---GTG--A-AAGGGAACAG-G-------A--TC--------TA--TC-----TATT----AAG---CT--A-TTAGGG----TCCTTCGATTGATACACATACATATTAG-TTG--TGTATATA-ACGAGACAAT-AGGAAAT-----C-T-G-T----GAAATG-A--A-G-AACGTACT--C-CCG-----C-------T-C-T-A----T--T-C---------A-----AA----T-----G--------A-T--------T------GG-TAGATT---A-CAAGCATTCTGTGAATC-GGAATA-GT-AA--T--A------------------T------T--------T-T-T-A-CTAT----CT--ATAGCC-A-C-A--GAA--GAGTA-TT--C-----T--A-A--A-------G-ATTCTTCAGAATTCAA-----GATTGGGAACTGATGATTGTAAGATTCTGAC-AA--A-CC---A-------TT---------A---------CC--A-T-TCTCTTT--ATTCGTTTTATTGAAC-GA-----A---------------C------C------C---T--CA-T-T-GGACACCAAA----C---C---T-TT-TAAAGCTAAAAGGTTTGGTATCCGGTTATACTGCATAACCAGAC--AGATATTATCCGTTTATAGAAGGAGCTTCAACAGAAGCT Didymochlaena_truncatula CCGCCCC--C-T-C-TG-----T-----TG-ACTTAGTT---GG------C--------C-C-----C-C-----C-C---CCG--G-ACGTGAACGA-G-------A--TC--------TA--TC-----CGTTAAGCAAG---CT--AGATA-GG----TCCTTCGGTTGATACACATACATATTCA-CTGTATGTATATA-GCAAGACAAT-AGAAAAT-----CTT-TGTCTTTGAAATG-A--G-G-AATGCACT--C-C----T--T---------C-T-T---TTA-TCC---------A-----AA----A-----G--------ATT---A-GGGT------GG-GAGATTACAAGCAAGCATTTTGCAAATC-AGAATA--G-GA--A--A---------C--------T------T--------T-G-TAATCTAT-----T--AAATCG---C-A--GAA--GGATA-TT--C-----C--A-A--A-------T-AGTTTTCAAAATTCAA-----GCTTGCAAACTGATAATCGTGAATTTGTGAC-AA--G-CT---G-------TT---------A---------TC--A-T-TCTTTCC--ATTCGTTATACCGAAT-GG-----A-------C-------CT-T---C----A-C-C-T--CA-T-T-GGACACCAAACCTCC--TT---C-TC-TGAAGTTAAGAGATTTGGTATCCAGTTGTGCTGCATAACCAGAC--GGATGTTATCCGTTTATAGAAGGAGCTTCAACGGAAGCT Dryopteris_filix_mas CCGCCCC--C-T-C-TG-----T-----TG-ATTTAGTT---GG------CT---------C-----C-C-----C-A---CCG--G-ACGTGAACAA-G-------A--TC--------TA--TC-----CGTTAAGCAGT---CT--AGATA-GG----TCCTTCGGTTGATACACATACATATTAG-CTGTATGTATATA-GCAAGACAAT-AGAAAAT-----C-T-T-T----GAAATG-A--G-G-AATACACT--C-C----T--T---------C-T-T---TTA-TCC---------A-----AA----A-----G--------ATT---G-GGGT------GG-GAGATT---A-CAAGCATTCTGCAAATC-GGAATA--G-GA--A--A---------C--------T------T--------C-G-TAATCTAT-----T--AAATCG---C-A--GAG--GGATA-TT--C-----C--A-A--A-------T-AGTTTTCAGAATTTAA-----GGTTGGAAACTGATAATCGTGAAATTGTGAG-AA--G-CT---G-------CT---------A---------CC--A-T-TCCTTTC--ATTCGTTCCACCGCAC-GA-----A-------C-------TT-T---C----A-T-C-T--CA-T-T-GGACACCAAACCT----CC---C--C-TGAAGTTGAGAGATTTGGTATCCAGTTGTGCTGCATAACCAGAC--GGATGTTATCCGTTTACAGAAGGAGCTTCAAA??????? Lindsaea_blotiana CCGCCCC--C-----T------T-----T---GTTACCC---GG------CT-------C-T-----T-T-AAAAA-AG--AAGAAAATCGGGAACAA-G-------A--TC--------TA--TC-----TGTT----AAG---CA--AGAT-AGG----TCCTTCGGTTGATACA-ATACAAATTAATCGA--TGTATAGGTAT-A-ACAGG-ATAAAAT-----C-T-G-C----GAAATG-A--G-G-AATGGGCT-TT-GAA--T-CC---------T-T-T---TTA-TTC--A------------AAG---C--------------A-T--------T------GG-GGGATT---A-CAGGCATTCCGCAAATCA-GAATAG-G--C--ATCT-------T-C--------T------T--------C-T-TAATAGAT-----T---TCACT-G-T-A--GAAG--AATAT-TC----------C-AT-A-------T-ATTCTTCAGAATTAAA-----GATTGGAAACTGATGATTGTAAGATTGTGACAAACCACCCTG-ATT------CTTTTTAG--C----CGT--TG--A-T-TCTTTTT--AGCCGTTATATCGAAT-GA-----A----C-TC-----TTC--C---T-TTTA-C-T-T--CA-T-T-GGATACCAAA----C---CTTTCCTTTTGAAGTGAAAAGGTTTGGTATCCAGTTATGCTGCAGAACGAGACAAAACTATTATCCGTTTATAGAAGGAGCCTCGACAGAAGCT Lindsaea_multisora CCGCCCC--C-----T------T-----T---GTTACTC---GG---------------C-----------------AG--AAGAAAGTCGGGAACAA-G-------A--TC--------TA--TCTGTTATGTT----AAG---CA--AGAT-AGG----TCCTTCGGTTGATATA-ATACAAACGAATCGA--TGTATAGGTAT-A-ACAGG-AGAAAAT-----C-T-G-C----GAAATG-A--G-G-AATGGGCT-TT-GAA--T-CC---------T-T-T---TTA-TTC--A------------AAG---C--------------A-T--------T------GG-GGGATT---A-CAGGCATTCCGCAAATCG-GAATAG-G--C--ATCT-------T-C--------T------T--------C-T-TAAGAGAT-----T---TCACT-G-T-A--GAAG--AATAT-CC----------C-AT-A-------T-ATTCTTCAGAATTAAA-----GATTGGAAACTGAGAATTGTAAGATTGTGAC-AA--A-CC---A--------C---------C----C----TG--A-T-TCTTTTT--AGCCGTTATATCGGAT-GA-----A----C-TC-----TTC--C---C-TTTA-C-T-T--CA-T-T-GGATACCAAA----C---CTTTCCTTTTGAAGTTAAAAGGTTTGGTATCCAGTTATGCTGCAAAACGAAACAAAACTATTATCCGTTTATAGAAGGAGCCTCGACAGAAGCT Lindsaea_parasitica CCGCCCC--C-----T------T-----T---GTTACTC---GG---------------C-----------------AG--AAGAAAGTCGGGAACAA-G-------A--TC--------TA--TC-----TGTT----AAG---CA--AGAT-AGG----TCCTTCGGTTGATACA-ATACAAATGAATCGA--TGTATAGGTAT-A-ACAGG-AGAGAAT-----C-T-G-C----GAAATG-A--G-G-AATGGGCT-TT-GAA--T-CC---------T-T-T---TTA-TTC--A------------AAG---C--------------A-T--------T------GG-GGGATT---A-CAGGCATTCCGCAAATCA-GAATAG-G--C--ATCT-------T-C--------T------T--------C-T-TAAGAGAT-----T---TCACT-G-T-A--GAAG--AATAT-TC----------C-AT-A-------T-ATTCTTCAGAATTCAA-----GATTGGAAACTGAGAATTGTAAGATTGTGAC-AA--A-CC---A--------C---------C----C----TG--A-T-CCTTTTT--AGCCGTTATATCGGAT-GA-----A----C-TC-----TTA--C---C-TTTG-C-T-T--CA-T-T-GGATACCAAA----C---CTTTCCTTTTGAAGTTAAAAGGTTTGGTATCCAGTTATGCTGCGAAACGAGACAAAACTATTATCCGTTTATAGAAGGAGCCTCGACAGAAGCC Lindsaea_plicata CCGCCCC--C-----T------T-----T---GTTACTC---GG------CT-------C-T-----T-T--AAAAGAG--AAGAAAGCCAGGAACAA-G-------A--TC--------TA--TC-----TGTT----AAG---GC--AGAT-AGG----TCTTTCGGTTGATACA-ATACAAATTAATCGA--TGTATAGGTAT-A-ACAGG-ATAAGAT-----C-T-G-C----GAAATG-A--G-G-AATGGGCT-CT-TAA--T-CC--TT---T-T-T-T---TTA-TTC--A------------AA----A--------------A-T--------T------GG-GGGATT---A-CAGGCATTCCG-AAATCA-GAATAG-G--C--A----------T-C--------T------T--------C-T-TAATATAT-----T---TCACT-G-T-A--GAAT--AATAT-TC-------TA-C-AT-A-------C-ATTCTTCAGAATTAAA-----GATTGGAAACTGATGATTGTAAGATTGTGAC-AA--A-CC---A--------C---------C----C----TG--A-T-TCTTTTT--AGTCGTTATATCGGAT-G--------------------------------------T-T--CA-T-T-GGATACCAAA----C---CCTT-CTTTTGGAGTTAAAAGGTTTGGTATCCAGTTATGCTGCAGAACTGGATAAAACTATTATCCGTTTATAGAAGGAGCTTCGATAGAAGCT Lindsaea_quadrangularis CCGCCCC--C-----T------T-----T---GTTACCC---GG------CT-------C-T-----T-G-AAAAA-AG--AAGAAAATCGGGAACAA-G-------A--TC--------TA--TC-----TGTT----AAG---CA--AGAT-AGG----TCCTTCGGTTGATACA-ATACAAATTAATCGA--TGTATAGGTAT-A-ACAGG-AGAAAAT-----C-T-G-C----GAAATG-A--G-G-AATGGGCT-TT-GAA--T-CC---------T-T-T---TTA-TTC--A------------AAG---C--------------A-T--------T------GG-GGGATT---A-CAGGCATTCCGCAAATCA-GAATAG-G--C--ATCT-------T-C--------T------T--------C-T-TAATAGAT-----T---TCACT-G-T-A--GAAG--AATAT-TC----------C-AT-A-------T-ATTCTTCAGAATTAAA-----GATTGGAAACTGATAATTGTAAGATTGTGAC-AA--A-CC---A--------C---------C----C----TG--A-T-TCTTTTT--AGCCGTTATATCGAAT-GA-----A----C-TC-----TTC--C---C-TTTA-C-T-T--CA-T-T-GGATACCAAA----C---CTTTCCTTTTGAAGTTCAAAGGTTTGGTATCCAGTTATGCCGCAGAACGAGACAAAACTATTATCCGTTTATAGAAGGAGCCTCGACAGAAGCT Lonchitis_hirsuta CCGCCCC--C-----T------C-----T---GTTACTT---GG------CT-------C-T-----T-T---GAA-C---GTGAGAGCGGGGAACAAGGCCTATATATTTCTATTTATATATTTC-----TATT----AAG---GT--AGAT-AGG----TTATTCGATTGACAAACATACGAATCAA-CCG--TGTATATA-ACGAGACAGT-GCAAAAT-----T-T-G-T----GAAATG-A--G-C-AATTTAAT-CC-CAA--T--C-------T-C-T-T---TTA-TCC---------A-----AA----A----GG--------G-T--------T------GGATAAATT---A-CAAACATCCTGCAAATC---AATA--T--A-TA--A-------T-T--------T------T--------T-T-TTTTA-AT-----C---TACCT-GCG-A--GGG---GATA--T--------T--CTA--A------CT-ATTTAGAATAGTTCAATTTGGGATTGAAAACTGATGATTGTAAGATTATGGC-AA--G-AC---A-------TT---------A---------TT--A-C-TCTTTCC--AGTCGTTCTATCGGACGGACTCTTG----CTTC-TTTTTTC-TT---CTTTTATCTTCTCGCATTATCGGACACCAAA----C---C---T-TC-T-AA---AAAAGGTTTGGTATCCAGTTATGCTGCGTAAACAGAC--AGATATTATCCGTTTATAGAAGGAGCTTCAACAGAAGCT Loxoma_cunninghamii ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Metaxya_rostrata CC-CCCC--G-----GC-----T-----T---GCTACTG---GG------CC-------C-C-----C-T---GAA-C---GTG--A-AAAGGAACAG-G-------A--TC--------TA--TC-----TATT----AAA---CT--A-TTAGGG----CCCTTCGATCGATACACATACATATTAG-TTG--TGTATATA-ACGAGATAAG-AAGAAAT-----C-T-G-T----GAAATG-A--A-T-AACGTACC--C-CCA-----C-------T-C-T-A---TTC-TAC---------A-----AA----T-----G--------G-T--------T------GA-TAGGTT---A-CAAGCGTTCTGTGAAAC-GGAATA-GG-AA--T--A-----TTT-C--------T----AAT-----AGATGTAT-ATCTATAGAGATAGATAGCC-G-C-A--GAA--GAGTA-TT--C-----T--A-A--A-------T-ATTATCCAGAATTCAA-----AATTGAGAACTGATGATTGCGAGATTCTCAC-AA--A-CC---A-------TT---------A---------CC--A-T-TCTTTTT--ATTCGTTCTATCCAGC-GA-----A------------------------------------C--T-T-GGATACCAAA----C---C---T-TT-T--A-CT-AAAGGTTTGGTATCCAGTTATACTGCATAACCAGAC--AGATATTATCCGTTTATAGAAGGAGCTTCAGCAGAAGCT Microlepia_speluncae CCG--CC--C---C--C----------------TCTGCT---AA------TT-------G-G-----C-T-----C-C---CCG--A-ACGTGAACAA-G-------A--TC--------CA--TC-----CATTAATATAGATAATACAGATA-GG----TCCTTCGATTGATCCACATAAATATTAA-CTGTATGTATATA-GCAAGACAGC-AGAAAAT-----T-T-G-T----GAAATG-A--A-A-ATTGCACCC-C-CAA--T--T-------T-A-G-T---TGA-TCC---------A-----GA----A-----GATCT----C-T--------T------GG-AAGATT---G-CAAGCATTCTGTGAATC-AGAATA--G-AA--A--A---------C--------T------T--------T-C-TAATCTGT-----C--AAATCC---C-G--GAA--GAATA-TT--C-----C-AA-A-TA----TT-TCATTTTTCAGAGTTCAA-----GGTTGGAAATTGATGATCGTGAGGTCGTGAC-AA--G-TC---A-------TT---------A---------TC--G-T-CCTCTTC--ATTCGTTCTCCCGTAC-GA-----A-------C-------CT-T---C----A-C-T-T--CA-T-T-GAATACCAAACCTTCT-TC---G-TC-CGAAGTTAAAAGGTTTGGTATCCAGTTATGCTGTATAACCAGAC--GGGTATTATCCGTTTGTAGAAGGAGCTTCAACAGAAGCT Nephrolepis_biserrata CCG-CCC--C-T-C-TG-----T-----TT-TTTTATTT---G--------G---------C-----C-C-----C-----CC------C--GAACGA-G-------A--TT--------TA--TC-----CGTTAAGCAAG---CT--AGATA-GG----TCTTTCGGTTGATACACATACATATTAA-CTGTATTTCTAGA-ACAAGACAAT-AGAAAAT-----C-T-T-T----GAAATG-AGGGAGAAATGCATT--C-C----T--T-------CTTTT-TATTTTA-TCC---------A-----AA----A-----T--------ATTGGGGTGGGTGGGGGGGG-GGGGTT---A-CAAACATTCTGTAAATC-GGACTA--G-GA--A--A---------C--------T------T--------C-G-TAATCTAT-----T--AAATCG---C-A--GAA--GGATA-TC--C-----C--A-A--A-------T-AGTTTTTAGAATTCAA-----AGTTGAAAACTGATAATCATGAAATTGTGAC-AA--G-CT---C-------TT---------ATT-------CTTTT---TTTTTTC--ATTCGCTCTGCCGCAC-GA-----A-------C-------CT-T---C----A-T-T-T--CA-T-T-GGACACCAAACCT---------C-T--T--A---GAG-G-TTTGGTGTCCAGTTGTGCTGCATAACCAGAT--GGGTGTTACCCGTTTATAGAAGGAGCT?CAACAGAAGCC Nesolindsaea_kirkii CCGCCCT--C-----T------T-----C---ATTATTT---GG------CT-------C-T-----T-TG--AAA-A---AAGAGAGCCGGGAACGA-G-------A--TC--------TA--TC-----TGTT----AAG---CT--AGAT-AAG----TCCTTCGATTGATACACATACACATGAATCGG--TGTATAGATAC-A-ACAGGAAAAAGAT-----C-T-G-C----GAAATG-A--G-G-AATGGGCT-CT-TAA--T--C-------T-T-T-T---TTA-TCCAAA------G-C---AA----AG----G--------A-T--------T------GG-GGGAAT---A-TGGGCATTCTGCGAATCA-TAGTAG-G--A--ATCT-------T-C---T----TAA----TA-------C-T-TAATATAT-----T---TCACT-G-T-A--GAAA--AATGT-T--------T--C-AT-A-------T-AGTCTTCAGAATTCAA-----GCTTGGAAACTGATGATTGTAAGATTGTGAC-AA--A-CC---A--------C---------C----C----TG--A-T-CATTTTT--AGTCGTTATATCGGAC-TA-----A----C-TC-----TTT--C---C-TTTA-C-T-T--GA-T-?-GGATACCAAA----C---CTTTTCTTTTGAAGTTAAAAGGTTTGGTATCCAGTTATGCTGCAGAACCAGACAAAAAGATTATCCGTTTATAGAAGGAGCTTCCACAGAAGCT Odontosoria_aculeata CCGCCCC--C-----T------T-----T---GTTACTC---GG------CT-------C-T-----T-T---AAA-A---AAGAAAGTATGGAACAA-G-------A--TC--------TA--TC-----TGTT----AAG---TT--AGAT-AAG----TCCTTCGATTGATACA-ATACAAATTAATCGG--TGTATAGATAT-A-ACAGG-AGAAAAT-----C-T-G-C----GAAATG-A--G-G-AATGGGCT-TT-CAA--TCCC-----------A-T---TTC-TTC--A------------AA----A-----T--------A-T--------T------GG-GGGATT---A-CAGACATTCCGCAAATCA-GAATAG-G--C--ATCT-------T-C-TT-----T------T--------C-T-TAATAGAT-----T---TCACT-G-T-A--GAAT--AATAT-TC-------TA-C-AT-A-------T-ATTCTTCAGAATTCAA-----GATTGGAAACTGATGATTGTAAGATTGTGAC-AA--A-CC---A--------C---------C----C----TG--A-T-GATTTTT--AGTCGTTATATCGGAC-GA-----A----C-TC-----TTT--C---C-TTTA-C-T-T--GA-T-T-GGATACCAAA----C---CTTTTCTTTTGGAGTTAAAAGGTTTGGTATCCAGTTATGCTGCAGAACCAGACAAAACTATTATCCGTTTATAGAAGGAGCTTCGACAGAAGCT Odontosoria_chinensis CCGCCCT--C-----T------T-----C---GTTACTC---GG------CT-------C-T-----T-T---AAA-A---AAGAAAGCCGGGAACAA-G-------A--TC--------TA--TC-----TGTT----AAG---CT--AGAT-AAG----TCCTTCGACTGATACA-ATACAAATTAATCGG--TGTATAGATAT-A-ACAGG-AGAAAAT-----C-T-G-C----GAAATG-A--G-G-AATGGGCT-TT-GAA--CCCC----ATTT-T-A-T---TTG-TTC--A------------AA----A-----T--------A-T--------T------GG-GGGATT---A-CAGACATTCCGCGAATCA-GAATAG-G--C--A----------T-C--------T------T--------C-T-AAATAGAT-----T---TCACT-G-T-A--GAAT--AATAT-TC-------TC-T-AT-A-------T-CTTCTTCAGAATTCAA-----GATTGGAAACTGATGATTGTAAGATTGTGAC-AA--A-CC---A--------C---------C----C----TG--A-T-TTTTTAT--AGTCGTTATATCGGAC-GA-----A----T-TC-----TTC--C---C-TTTA-C-T-T--GA-T-T-GGATACCAAA----C---CTTTTTGTTTGGAGTTCAAAGGTTTGGTATCCAGTTATGCTGCAGAACCAGACAAAACTATTATCCGTTTATAGAAGGAGCTTCGACAGAAGCT Osmolindsaea_odorata CCGCCCC--C-----T------T-----C---GTTACTC---GG------CT-------C-T-----T-T-----------AA-AAAGTCGGGAACGA-G-------A--TC--------TA--TC-----TGTT----AAG---CT--AGAT-AAG----CCCTTCGATTGATACACATACACATGAATCGG--TGTATAGATAC-A-ACAGG-AAAAAAT-----C-T-G-T----GAAATGAA--G-G-AATGGGCT-CT-TAA--T-CCTT-----T-T-TAT---TTATTCAAAA------GA----AA----A-----G--------A-T--------T------GG-GGGAAT---A-CGGGCATTCTGCGAATCA-TAATAG-G--A--ATCT-------T-AT--T-AC-TAAT---TA-------A-T-AAATAGAT-----T---TCACT-G-T-C--GAAT--AATAT-T--------C--C-AT-A-------T-AGTCTTCAGAATTCAA-----GCTTGGAAACTGATGATTGGAAGATTGTGAC-AA--G-TC---A--------C---------C----C----TG--A-T-TCTTTTT--AGTCGTTATATCGGAC-AA-----G----C-GC-----TTC--C---C-TTTC-C-T-T--GA-T-T-GGATACCAAA----C---CTTTTCTTTTGGAGTTAAAAGGTTTGGTATCTAGTTATGCTGCAGAACCAGATAAAAAGATTATCCGTTTATGGAAGGAGCTTCGACAGAAGCT Polypodium_vulgare CCGCCCC--C-T-C-TG-----T-----TG-ATTTATTT---GA------CT---------C-----C-C-----C-----CCG--G-ACGTGAACGA-G-------A--TC--------TA--TC-----CGTTAAGCAAG---CT--AGATA-GG----TCCTTCGGTTGATACACATCCATATTAA-CTGTATTTCTATG-ACAAGACAAT-AGAAAAT-----C-T-T-T----GAAATG-A--G-G-AATGCACT--C-C----T--T-------C-CTT-TCCGTTC-TTC---------A-----AA----A-----G--------ATT---G-GGGT------GG-GAGTTT---A-CAAACATTCCGCAAATT-AGAATA--G-GA--A--A---------C--------T------T--------C-G-TAATCTAT-----T--AAATCG---C-A--GAA--GGATA-TT--G-----C--A-A--A-------T-AGTTTTCAGAATTCAA---------GGAAACTGATAATCATGAAATTGTGAA-AA--G-CT---G-------TT---------A---------CC--A-C-TTTTTCC--ACCCTTTATACCGCAC-GA-----A-------T-------CT-T---C----A-T-A-T--CA-T-T-GGACACCAAACCTCC--CC---C-TT-TGAA---GAGAGATTTGGCATCCAGTTGTGCTGGATAACCATAC--AGGTGTTATCCGTTTATAGAAGGAGCTTCAACAGAAGCC Pteridium_aquilinum CCGCCCC--C-T-C-TC----------------TCTGTT---AA------TT-------G-A-----C-T-----C-T---CCG--A-ACGTGAACAA-G-------A--TC--------CA--TC-----CGTTAAGCTAG---AT--AGATA-CG----TCTTTCGATTGATACACATACATATTAT-GTGTATGTATATA-ACAAGACAAT-AGAAAAT-----T-T-A-C----GAAATG-A--G-G-AATGTACTC-C-CAA--T--T-------T-A-T-T---TGA-TCC---------A-----TA----A-----G--------G-T--------T------GG-TAGATT---A-CAAGCATTCTGTAAATC-AGAATA--G-AA--A--A---------C--------T------T--------C-C-TAATCTAT-----T--AAAACC---CAGTTAAA--GGATA-TT--C-----C----A--A-----C-T-ATTTTTCAGAGTTCAA-----GGTTGGAAACTGATGATCGTGAGATTCTGAC-AA--G-CC---A-------TT---------G---------TA--C-T-CTTCTCT--ATTCGTTCTGCCGTAC-GA-----A-------C-------CT-T---C----A-C-T-T--CA-T-T-GAATACCAAACCTTC--TC---T-TC-CGAAGTTAAAAGGTTTGGTATCCAGTTATGCTGCATAACCAGAC--GGATATTATCCGTTTATAGAAGGAGCTTCAACAGAAGCT Rumohra_adiantiformis CCG-CCC--C-T-C-TG-----T-----TT-ATTTAGTT---GG------CT-CCCCCCC-C-----C-C-----C-C---CCG--G-ACGTGAACGA-G-------A--TC--------TA--CC-----CGTTAGGCAAG---CT--AGATA-GG----TCCCTCGGTTGATACACATACATATTAG-CCGTATGTATATA-GCAAGACAAT-AGAAAATAGAAAA-TAT-TC---GAAATG-A--G-G-AATACAC---C-C----C--T-------C-C-T-T---TTA-TCC---------A-----AA----A-----G--------GTT---G-GGGT------GG-GAGATT---A-CAAGCATTCTGCAAATC-GGAATG--G-GA--A--A---------C--------T------T--------T-G-CAATCTAT-----T--AGATTG---C-A--GAA--GGATA-TT--C-----C--A-A--A-------T-AGTTTTCAGAATTCAA-----GGTTGGAAACTGATAATCATGAGATTATGAT-AA--G-CT---G-------TT---------A---------TC--A-T-TCTTTCC--ATTCGTTCTACCGCAC-GA-----A-------C-------CT-T---T----A-T-C-T--CA-T-T-GGACACCAAACCTCC--TC---C-TC-TGAAGTTGAGAGATTTGGTATCCAGTTGTGCTGCATAACCAGAC--GGATGTTATCCGTTTATAGAAGGAGCTTCA????????? Saccoloma_elegans CCGCCCC--C-T---T------T-----T---TTTACTT---GG------CT-------C-C-----C-T---G-A-C---CCT--A-A-GAG-ACAA-G-------A--TC--------TA--TC-----TGTT----AAG---AT--AGCTA-GG----TCCTTCGATTGATACACATACATATTAG-CTG--TGTATATA-GCGAGACAAT-AGAAAAT-----C-T-G-T----GAAAT-----------T-T-C---C-AAA--T--C-------T-C-T-T---TTA-TCC---------A-----AA----A-----G--------A-T--------T------GG-GAGATT---A-CAAGCATCCTGTGAATC-AGGATA--G-AAC-A--ATTCTT--TCC--------T------T--------T-C-TAATCTAT-----T--CTATCC---C-A--GAA--GGATA-TT--A-----T--A-A--A-------T-ATTCTTCAGAATTCAA-----GATTGGAAACCGATGATTGTAAGATCATGAA-AA--A-CC---G-------CT---------A---------TC--A-T-TTTTCCT--ATTCGAGAAATCAGAC-GA-----ACCTT---CA------CT-TC--C----A-C-T-T--CA-T-T-GGACACCAAA----C---C---T-TC-TGAAGTTAAAAGGTTTGGTATCCATCTGTGCTGCATAACCAGAC--AGATATTATCCGTTTATAGAAGGAGCTTCAACAGAAGCT Saccoloma_inaequale CCGCCCC--C-T---T------T-----T---TTTACTT---GG------CT-------C-C-----C-T---G-A-C---CCT--A-A-GAG-ACAA-G-------A--TC--------TA--TC-----TGTT----AAG---AT--AGCTA-GG----TCCTTCGATTGATACACATACATATTAG-CTG--TGTATATA-GCGAGACAAT-AGAAAAT-----C-T-G-T----GAAAT-----------T-T-C---C-AAA--T--T-------T-C-T-T---TTA-TCC---------A-----AA----A-----G--------A-T--------T------GG-GAGATT---A-CAAGCATCCTGTGAATC-AGGATA--G-AAC-A--ATTCTT--TGT--------T------T--------T-T-TAATCTAT-----T--CTATCC---C-A--GAG--GGATA-TT--A-----T--A-T--A-------T-ATTCTTCATAATTAAA-----GATTGGAAACCGATGATTGTAAGATCATGAA-AA--A-CC---G-------CT---------A---------TC--A-T-TTTTCCT--ATTCGAAAAATCAGAC-GA-----A-------C-------CT-T---C----A-C-T-T--CA-T-T-GGACACCAAA----C---C---T-TC-TGAAGTTAAAAGGTTTGGTATCCATTTGTGCTGCATAACCAGAC--AGATATTATCCGTTTATAGAAGGAGCTTCAACAGAAGCT Sphenomeris_clavata CCGCCCC--C-----T------T-----C---GTTACTC---GG------CT-------C-T-----TGA---AAA-A---AAGAAAGCCGGGAACAA-G-------A--TC--------TA--TC-----TGTT----AAG---CT--AGAT-AGG----TCCTTCGATTGATACACATACAAATTAATCGG--TGTATAGATAC-A-ACAGG-AAAAAAT-----C-T-G-C----GAAATG-A--G-G-AATGGGCT-TT-TCA--T-CC---------C-T-T---TTA-TCC---------G-----AA----A-----G--------A-T--------T-------G-GGAATT---A-CAGGCATT-C-CG---C---------G--A--A----------------------------T--------C-------AGA------------A---G---A--G-----AA-A-----------T--C---------------TTCTTCAGAATTCAA-----GATTGGAAACTGAGAATTGTAAGATTGTGAC-AA--A-CC--AA--TC---TC-------AAC----C----TG--A-T-TCTTTTT--AGTCCTTATCTCGGAC-GA-----A----C-TC-----TTC--T---C-TTTA-C-T-T--GA-T-T-GGATACCAAA----C---CTTTTAACTGCAAAAGAAAAGGTTTGGTATCCAGTTATGCTGCAGAACCAGACAAAAAGATTATCCGTTTATAGAAGGAGCTTCGACAGAAGCT Tapeinidium_luzonicum CCGCCCC--C-----T------T-----C---ATTACTC---GG------TT-------C-T-----T-T---AAA-A---AAGAAAGCCGGGAACGA-G-------A--TC--------TA--TC-----TGTT----AAG---CT--AGAT-AAG----TCCTTCGATTGATACACATACACATGAATCGG--TGTATAGATAC-A-ACAGGAAAAAAAT-----A-T-G-C----GAAATG-A--G-C-AATGGGCT-TT-TAA--T-CC-------C-T-T-T---TTA-TCCAAA------G-----------------T--------A-T--------T------GG-GGGAAT---A-CGGGCATTCTGCGAATCA-TAATAG-G--A--ATCT-------T-CT--TAACTTAATA--TATTTC---C-T-TAATATAT-----T---TCACT-G-T-A--GAAG--AATAT-T--------C--C-AT-A-------T-AGTCTTTAGAATTCAA-----GCTTGGAAACTGAGAATTGTAAGGTTGTGAC-AA--A-CC---A--------T---------C----C----TA--A-T-TCTTTTT--AGTCGTTATATCGGAC-GA-----A----C-CC-----TTC--C---C-TTTA-C-T-T--GA-T-T-GGATACCAAA----C---CCTTTCTTTTGGAGTTAAAAGGTTTGGTATCCAGTTATACTGCAGAACTAGACAAAAAGATTATCCGTTTATAGAAGGAGCTTCGACAGAAGCT Tectaria_incisa CCGCCCC--C-T-C-TG-----T-----TG-ATTTATTT---GA------CT---------C-----C-C-----C-----CCG--A-ACGGGAACGA-G-------A--TC--------TA--TC-----CGTTCAGCAAG---CT--AGATA-GG----TCCTTCGGTTGATACACATACATATTAA-CTGTATTTATATG-ACAAGACAAT-AGAAAAT-----C-T-T-T----GAAATG-A--G-G-AATGCACT--C-C----T--T-------C-CTC-TCCGTTA-TTC---------A-----AA----A-----G--------ATT---G-GGGT------GG-GGGTTT---A-CAAGCATTCCACAAATC-AGAATA--G-GA--A--A---------C--------T------T--------C-G-TAATCTAT-----T--AAATCA---C-G--GAA--GGATA-TT--C-----C--A-A--A-------T-AGTTTTCATAATTCAA-----GGTTGGAAACTGATAATCATGAAATTGTGAG-AA--G-CT---G-------TT---------A---------CCATT---TTCTTCC--ATTCTTTATACCGCAC-GA-----G-------C-------CT-T---C----A-T-C-T--CA-T-T-GGACACCAAACCTCC--CC---C-TC-TGAAGTTGAGAGATTTGGCATCCAGTTGTGCTGCATAACCATAC--GGGTGTTATCCGTTCATAGAAGGAGCTTCAACAGAAGCC Thelypteris_palustris CCGCCCC--C-T-C-TG-----T-----CG-ATTTAGTT---GGCT---CCC-------CTC-----C-C-----C-C---CCG--G-ACGTGAACGA-G-------A--TC--------TA--TC-----CGTTAAGCAAG---CT--AGATA-GG----TTCTTCGGTTGATACACATACATATTGA-C-TT-C--ATGT--ACAAGACAAT-AGAAAAT-----C-T-T-T----GAAATG-A--G-G-AATGCACT--CTCAA--T--T-------T-C-T-T---TTA-TCC---------A-----AA----A-----G--------ATT---G-AGGT------GG-GAGATT---A-CAAGCATTCTGCAAATC-GGAGTA--A-GA--A--A---------C--------T------T--------C-G-TAATCCAT-----C--AAATCG---C-A--GAA--GGATA-TT--C-----C--A-A--A-------T-AGTTTTCAGAATTCAA-----GGTTGGAAACTGATAATCGTGAAATTGTGAC-AA--G-CT---G-------TT---------A---------TC--A-T-CCTTTCC--ATTCGTTCTACCGCAC-GA-----A-------C-------CT-T---C----A-C-C-T--CG-T-T-GGACACCAAACCTCC--TC---C-TC-CGGAGTTAAGAGATTTGGTATCCAGTTGTGCTACATAACCAGGA--GGATATTATCCGTTTGTAGAAGGAGCTTCGACAGAAGCC ; END;