#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 04, 2024; 6:20 GMT TreeBASE (cc) 1994-2008 Study reference: Haugland R., Vesper S., & Harmon S. 2001. Phylogenetic relationships of Memnoniella and Stachybotrys species and evaluation of morphological features for Memnoniella species identification. Mycologia, 93(1): 54-65. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S688] [ The following blocks are input data for analysis step 1042 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1042; DIMENSIONS NTAX=12; TAXLABELS Fusarium_sambucinum_NRRL13708 Memnoniella_echinata_ATCC20513 Memnoniella_echinata_ATCC22697 Memnoniella_echinata_ATCC34173 Memnoniella_echinata_NRRL1694 Memnoniella_echinata_NRRL1982 Memnoniella_echinata_UAMH6594 Memnoniella_sp._ATCC22699 Memnoniella_subsimplex_ATCC18838 Memnoniella_subsimplex_ATCC22700 Memnoniella_subsimplex_ATCC32334 Memnoniella_subsimplex_ATCC32888 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3954] TITLE Fig._1; LINK TAXA = TaxaForAnalysisStep1042; DIMENSIONS NCHAR=756; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Fusarium_sambucinum_NRRL13708 CGCCCGTCGCTACTACCGATTGAATGGCTCAGTGAGGCGTCCGGACTGGCCCAGAGTGGTGGGCAACTACCGCTCAGGGCCGGAAAGCTCTCCAAACTCGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACCGAGTTTACAA---CTCCCAAACCC-C-TGTGAAC-ATACCTTAATGTTGCCTCGGCGGATCAGCCCGCGCCCCGTAAAAC---GGGACG---GCCCGCCAGAGGACCC---AAACTCTAATGTTTCTTATTGTAACTTCTGAGTAAAACAAACAAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTCCGGCGGGCATGCCTGTTCGAGCGTCATTT-CAACCCTCAAGCCCCC-----------------GGGTTTGGTGTTGGGGATCGGCTCTGCCCTTCTGGCGGCGCCGCCCCCGAAATACATTGGCGGTCTCGCTGCAGCCTCCATTGCGTAGTAGCTAACACCTCGCAACTGGAACGCGGCGCG-CCATGCCGTAAAACCCC--AA-CTTCTGAATGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCT Memnoniella_echinata_ATCC20513 CGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGGCGTTCGGACTGGTCCAGGGAGGTGGGCAACTACCACCCAGGACCGGAAAGTTCTCCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACCGAGTTTACAA---CTCCCAAACCCTTATGTGAACCATACCTA-TCGTTGCTTCGGCGGGAGAGCCCCGGCCCCCTCGGGCCCGGAGTCAGGCGCCCGCCG-GAGACCCC--AAACTCTTTGTTTTACTTGAGTATCGTCTGAGTGGTATAAACAAATACATCAAAACTTTTAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGTCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTT-CAACCCTCAGGACCCCCCT--TTCGCGG-GGAGGGACCTGGCGTTGGGGATCGGCCCGCCCCCCGCGGCGGCGCCGTCCCCGAAATCTAGTGGCGGTCTCGCTGCAGCCTCCCCTGCGTAGTAGTTACAACCTCGCA-TCGGAGCGCGGCGCGGCCACGCCGTAAAACCCCC-GACTTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTC Memnoniella_echinata_ATCC22697 CGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGGCGTTCGGACTGGTCCAGGGAGGTGGGCAACTACCACCCAGGACCGGAAAGTTCTCCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACCGAGTTTACAA---CTCCCAAACCCTTATGTGAACCATACCTA-TCGTTGCTTCGGCGGGAGAGCCCCGGCCCCCTCGGGCCCGGAGTCAGGCGCCCGCCG-GAGACCCC--AAACTCTTTGTTTTACTTGAGTATCGTCTGAGTGGTATAAACAAATACATCAAAACTTTTAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGTCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTT-CAACCCTCAGGACCCCCCT--TTCGCGG-GGAGGGACCTGGCGTTGGGGATCGGCCCGCCCCC-GCGGCGGCGCCGTCCCCGAAACCTAGTGGCGGTCTCGCTGCAGCCTCCCCTGCGTAGTAGTTACAACCTCGCA-TCGGAGCGCGGCGCGGCCACGCCGTAAAACCCCC-GACTTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTC Memnoniella_echinata_ATCC34173 CGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGGCGTTCGGACTGGTCCAGGGAGGTGGGCAACTACCACCCAGGACCGGAAAGTTCTCCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACCGAGTTTACAA---CTCCCAAACCCTTATGTGAACCATACCTA-TCGTTGCTTCGGCGGGAGAGCCCCGGCCCCCTCGGGCCCGGAGTCAGGCGCCCGCCG-GAGACCCC--AAACTCTTTGTTTTACTTGAGTATCGTCTGAGTGGTACAAACAAATACATCAAAACTTTTAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGTCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTT-CAACCCTCAGGACCCCCCT--TTCGCGG-GGAGGGACCTGGCGTTGGGGATCGGCCCGCCCCCCGTGGCGGCGCCGTCCCCGAAATCTAGTGGCGGTCTCGCTGCAGCCTCCCCTGCGTAGTAGTTACAACCTCGCA-TCGGAGCGCGGCGCGGCCACGCCGTAAAACCCCC-GACTTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTC Memnoniella_echinata_NRRL1694 CGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGGCGTTCGGACTGGTCCAGGGAGGTGGGCAACTACCACCCAGGACCGGAAAGTTCTCCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACCGAGTTTACAA---CTCCCAAACCCTTATGTGAACCATACCTA-TCGTTGCTTCGGCGGGAGAGCCCCGGCCCCCTCGGGCCCGGAGTCAGGCGCCCGCCG-GAGACCCC--AAACTCTTTGTTTTACTTGAGTATCGTCTGAGTGGTATAAACAAATACATCAAAACTTTTAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGTCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTT-CAACCCTCAGGACCCCCCT--TTCGCGG-GGAGGGACCTGGCGTTGGGGATCGGCCCGCCCCC-GCGGCGGCGCCGTCCCCGAAATCTAGTGGCGGTCTCGCTGCAGCCTCCCCTGCGTAGTAGTTACAACCTCGCA-TCGGAGCGCGGCGCGGCCACGCCGTAAAACCCCC-GACTTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTC Memnoniella_echinata_NRRL1982 CGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGGCGTTCGGACTGGTCCAGGGAGGTGGGCAACTACCACCCAGGACCGGAAAGTTCTCCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACCGAGTTTACAA---CTCCCAAACCCTTATGTGAACCATACCTA-TCGTTGCTTCGGCGGGAGAGCCCCGGCCCCCTCGGGCCCGGAGTCAGGCGCCCGCCG-GAGACCCC--AAACTCTTTGTTTTACTTGAGTATCGTCTGAGTGGTATAAACAAATACATCAAAACTTTTAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGTCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTT-CAACCCTCAGGACCCCCCT--TTCGCGG-GGAGGGACCTGGCGTTGGGGATCGGCCCGCCCCC-GTGGCGGCGCCGTCCCCGAAATCTAGTGGCGGTCTCGCTGCAGCCTCCCCTGCGTAGTAGTTACAACCTCGCA-TCGGAGCGCGGCGCGGCCACGCCGTAAAACCCCC-GACTTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTC Memnoniella_echinata_UAMH6594 CGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGGCGTTCGGACTGGTCCAGGGAGGTGGGCAACTACCACCCAGGACCGGAAAGTTCTCCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACCGAGTTTACAA---CTCCCAAACCCTTATGTGAACCATACCTA-TCGTTGCTTCGGCGGGAGAGCCCCGGCCCCCTCGGGCCCGGAGTCAGGCGCCCGCCG-GAGACCCC--AAACTCTTTGTTTTACTTGAGTATCGTCTGAGTGGTATAAACAAATACATCAAAACTTTTAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGTCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTT-CAACCCTCAGGACCCCCCT--TTCGCGG-GGAGGGACCTGGCGTTGGGGATCGGCCCGCCCCCCGTGGCGGCGCCGTCCCCGAAATCTAGTGGCGGTCTCGCTGCAGCCTCCCCTGCGTAGTAGTTACAACCTCGCA-TCGGAGCGCGGCGCGGCCACGCCGTAAAACCCCC-GACTTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTC Memnoniella_sp._ATCC22699 CGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGGCGTTCGGACTGGTCCAGGGAGGTGGGCAACTACCACCCAGGACCGGAAAGTTCTCCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACCGAGTTTACAA---CTCCCAAACCCTTATGTGAACCTTACCCA-TCGTTGCTTCGGCGGGAGAGCCCCGGCGCCCTCGGGCCCGGAACCAGGCGCCCGCCG-GAGACCCC--AAACTCCATGTTTTAAC-GAGTATCGTCTGAGTGGTATAAACAAATACATCAAAACTTTTAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGTCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTT-CAACCCTCAGGCTCCCCCT--TCCG-GG-GGAGGAGCCTGGCGTTGGGGATCGGCCCGCCCCC-GCG-CGGAGCCGTCCCCGAAATCTAGTGGCGGTCTCGCTGCAGCCTCCCCTGCGTAGTAGTTACAACCTCGCA-CCGGAGCGCGGCGCGGCCACGCCGTAAAACCCCC-GACTTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTC Memnoniella_subsimplex_ATCC18838 CGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGGCGTTCGGACTGGCCCAGGGAGGCGGGTAACTGCCCCCCAGGGCCGGAAAGTTCTCCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACCGAGTTAACAAAA-CTCCCAA-CCCAC-TGTGAAC-ATACCTATTTATTGCTTCGGCGGTAGCGCCCCGGC----T-GAGCCCGGAGCAAGGCGCCCGCCGAGGGACCCCC-AAACCAGTTTTCTTATAGCGGAATATTCTGAGTAAAA--CACAAAT-CATTAAAACTTTTAACAACGGATCTCTTGGCTCTGCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTGACAACCCTCAGGCCCCCGCTGACCTTCGGCGGGGGGACCTGGCATTAGGGATCAGCCTGCCCCTCG-GGCGGTGCTGTCCCCCAAACCCAGCGGCGGTCACGCTTAGCCCTCCCCTGCGTAGTAAT-AT-ACCTCGCA-CTGGATCTAGGCATGGCCATGACCTAAAACCCC-TAATTTTCAAGACGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTC Memnoniella_subsimplex_ATCC22700 CGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGGCGTTCGGACTGGCCCAGGGAGGCGGGTAACTGCCCCCCAGGGCCGGAAAGTTCTCCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACCGAGTTAAAAAAAACTCCCAA-CCCAC-TGTGAAC-ATACCTATTTGTTGCTTCGGCGGTAGCGCCCCGGC----T-GAGCCCGGAGCAAGGCGCCCGCCGAGGGACCCCCAAAACCAGTTTTCTTATAGCGGGATATTCTGAGTAAAAAACACAAAT-CATCAAAACTTTTAACAACGGATCTCTTGGCTCTGCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTGACAACCCTCAGGCCCCCGCTGATCTCCGGCGGGGGGACCTGGCATTAGGGATCAGCCTGCCCCTCG-GGCGGTGCTGTCCCCCAAACCTAGCGGCGGTCACGCTTAGCCCTCCCCTGCGTAGTAGC-AT-ACCTCGCA-CCGGATCTAGGCGTGGCCATGACCTAAAACCCC-TAAATCTCAAGACGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTC Memnoniella_subsimplex_ATCC32334 CGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGGCGTTCGGACTGGCCCAGGGAGGCGGGTAACTGCCCCCCAGGGCCGGAAAGTTCTCCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACCGAGTTAACAAA--CTCCCAA-CCCAC-TGTGGAC-ATACCCATTCGTTGCTTCGGCGGTAGCGCCCCGGC----T-GAGCCCGGAGCAAGGCGCCCGCCGAGGGACCCCC-AAACCAGTTTTCTTACAGCGGGATATTCTGAGTAAAAA-CACAAAT-CATCAAAACTTTTAACAACGGATCTCTTGGCTCTGCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTGACAACCCTCAGGCCCCCGCTGACCTTCGGCGGGGGGACCTGGCATTGGGGATCAGCCCGGCCCTCG-GGCGGTGCTGTCCCCCAAACCCAGCGGCGGTCACGCTTAGCCCTCCCCTGCGTAGTAGC-AT-ACCTCGCA-CCGGATCTAGGCATGGCCATGACCCAAAACCCCCTAATTTTCAAGACGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTC Memnoniella_subsimplex_ATCC32888 CGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGGCGTTCGGACTGGCCCAGGGAGGCGGGTAACTGCCCCCCAGGGCCGGAAAGTTCTCCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACCGAGTTAACAAA--CTCCCAA-CCCAC-TGTGGAC-ATACCTATTTGTTGCTTCGGCGGTAGCGCCCCGGC----T-GAGCCCGGAGCAAGGCGCCCGCCGAGGGACCCCC-AAACCAGTTTTCTTATAGCGGGATACTCTGAGTAAAA--CACAAAT-CATCAAAACTTTTAACAACGGATCTCTTGGCTCTGCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTGACAATCCTCAGGCCCCCGCTGACCTTCGGCGGGGGGACCTGGCATTAGGGATCAGCCTGCCCCTCG-GGCGGTGCTGTCCCCCAAACTCAGCGGCGGTCACGCTTAGCCCTCCCCTGCGTAGTAGC-AT-ACCTCGCA-CTGGATCTAGGCATGGCCATGACCTAAAACCCC-TAATTTTCAAGACGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Fig._1) = N: 1-756; CODONPOSSET CodonPositions (CHARACTERS = Fig._1) = N: 1-756; END; [ The following blocks are output data for analysis step 1042 ] BEGIN TREES; TITLE Tb5818; LINK TAXA = TaxaForAnalysisStep1042; TREE Fig._1 = [&R] ((((((Memnoniella_echinata_UAMH6594,Memnoniella_echinata_ATCC34173),Memnoniella_echinata_ATCC20513),Memnoniella_echinata_NRRL1982),Memnoniella_echinata_NRRL1694,Memnoniella_echinata_ATCC22697)Memnoniella_echinata,Memnoniella_sp._ATCC22699),(((Memnoniella_subsimplex_ATCC32888,Memnoniella_subsimplex_ATCC18838),Memnoniella_subsimplex_ATCC32334),Memnoniella_subsimplex_ATCC22700)Memnoniella_subsimplex,Fusarium_sambucinum_NRRL13708)Memnoniella; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3713] END;