#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 9:02 GMT TreeBASE (cc) 1994-2008 Study reference: Eberhardt U., Oberwinkler F., Verbeken A., Rinaldi A., Pacioni G., & Comandini O. 2000. Lactarius ectomycorrhizae on silver fir (Abies alba): morphological description, molecular charcterization, and taxonomic remarks. Mycologia, 92: 830-873. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S691] [ The following blocks are input data for analysis step 1048 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1048; DIMENSIONS NTAX=19; TAXLABELS Lactarius_cf._fulvissimus Lactarius_deliciosus_u80999 Lactarius_deterrimus_S1 Lactarius_deterrimus_S2 Lactarius_fulvissimus Lactarius_intermedius_ECM Lactarius_intermedius_S Lactarius_quieticolor Lactarius_salmonicolor_ECM Lactarius_salmonicolor_S1 Lactarius_salmonicolor_S2 Lactarius_salmonicolor_S3 Lactarius_scrobiculatus_S1 Lactarius_scrobiculatus_S2 Lactarius_semisanguifluus Lactarius_subsericatus_ECM Lactarius_subsericatus_S1 Lactarius_subsericatus_S2 Lactarius_subsericatus_S3 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2686] TITLE ITS_rDNA; LINK TAXA = TaxaForAnalysisStep1048; DIMENSIONS NCHAR=794; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Lactarius_cf._fulvissimus -------------------------------------GAACCTGCGGAAGGATCATTATC-TACAAA-GAT-TATGCAG-CGCGTGAGGGCTGT----------------TC????????TCGTGCACGCCCGGGTGTGTTTCCTC----ACATAATAATCCATCTCACCCTTT-GTGCATCACCGCGTGGGCACCCTTT-GGGATC------ATCTCGGAGGAGG-CTCGCGTTTTCACACAAACACCCC-TTTT-AAAAAGTGTAGAATGACCTCATTTATGCGCTAACCCGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAACCTCAACCTCCTTGGTTT-CTTCTGGAGACCAAAGCAGGCTTGGACTTTGGAGGCCTTTGCCGGCACCTC----TTTT-GGAGGCCAGCTCCTCTTAAACAAATTAGCAGGGTCCTCTTTGCCGATCCTTGACGTGTGATAAGATTTTTCCATGTCTTGGTTTCTGGCTCTGTCACTTTTGGGACCCGCTTCTAACCGTCTGGACCTCGCGTCGAGACAACGTTCGAGCACGTCTCCCTTCTCGGGAAGCTCCCTCGACCCCCACGAACCC-TTGACCTCAAATCGGGTGAGACTAC--------------------------------- Lactarius_deliciosus_u80999 ----------------------------------------------------------------AACGTGCGT-TGAGGGCGTGCGAGGGCTGTCGCTGACTTTTTGTTGACGCAAAA-GT-GTGCACGCCGGAGCGCGTCCTCTC----GCAT-AAAATCCATCTCACCCTTTTGTGCACCACCGCGTGGGCACCTTTT-GGGATCGAACCGATCCTGGAGGGGG-CTTGCGTTTTCACACAAACCCC---TTTT-AAAAAGTGTAGAATGACCCCATTTT-GCGATGACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATTCTCAACCTTCTCGGTTTTCTTCTGGACACCGAAGGAGGCTTGGACATTGGAGGCCTTTGCTGGCGTCTC----TT----AGACCCAGCTCCTCTTAAATGAATTAGCGGGGTCCTCTTTGCCGATCCTTGACATGTGATAAGATGTTTCCATGACTTGGTTTCTGGCTCTGTTGCATTTGGGACCCGCTTCTAACCGTCTCGAC--------GAGACAACGTTTGGGCGTGTCTCCCTTCTCGGGAGACTCTCTCAACCCCCACGAACCC-TTGACCTCAAA----------------------------------------------- Lactarius_deterrimus_S1 ----------------------------TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAAA-CATGTGTGAGG-CGTGCGAGGGCTGTCGCTGACTTTTT-GAGACACAAAA-GTCGTGCACGCCGGAGTGCGTCCTCTC----ACAT-AAAATCCATCTCACCCTTTTGTGCACCACCGCGTGGGTGCCCTTC-GGGATCGAATCGATCCAGGAGGGGG-CTTGCGTTTTCACACAAACCCC---TTTT-AAAAAGTGTAGAATGACCCCACTTT-GCGAT---ACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAATCTCAACCTTCTCGGTTTTCTTCTGGACACCGAAGGAGGCTTGGACTTTGGAGGCCTTTGCTGGCATCTCTCTCTTCTTGAGAGCCAGCTCCTCTTAAACGAATTAGCGGGGTCCTCTTTGCCGATCCTCGACATGTGATAAGATGTTTCCATGACTTGGTTTCTGGCTCTGTTGCCTTTGGGACCTGCTTCTAACCGTCTCGAC--------GAGACGACGTTTGGGCGCGTCTCCCTTCTCGGGAGACTCTCTCAACCCC-ACGAACCC-TTGACCTCAAATCGG------------------------------------------- Lactarius_deterrimus_S2 -----GAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAAA-CATGTGTGAGG-CGTGCGAGGGCTGTCGCTGACTTTTT---GACACAAAA-GTCGTGCACGCCGGAGTGCGTCCTCTC----ACAT-AAAATCCATCTCACCCTTTTGTGCACCACCGCGTGGGCGCCCTTT-GGGATCGAATCGATCCAGGAGGGGG-CTTGCGTTTTCACACAAACCCC---TTTT-AAAAAGTGTAGAATGACCCCACTTT-GCGAT---ACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAATCTCAACCTTCTCGGTTTTCTTCTGGACACCGAAGGAGGCTTGGACTTTGGAGGCCTTTGCTGGCATCTCTCTCTTCTTGAGAGCCAGCTCCTCTTAAACGAATTAGCGGGGTCCTCTTTGCCGATCCTCGACATGTGATAAGATGTTTCCATGACTTGGTTTCTGGCTCTGTTGCCTTTGGGACCTGCTTCTAACCGTCTCGAC--------GAGACGACGTTTGGGCGCGTCTCCCTTCTCGGGAGACTCTCTCAACCCC-ACGAACCC-TTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Lactarius_fulvissimus -----------------------------------------CTGCGGAAGGATCATTATCGTACAAA--ATGTGAGGGG-CATGCAAGGGCTGTCGCTGACT-----------CAAA--GTCGTGCACGCCCGGGTGTGTTCCCTC----ACATAATAATCCATCTCACCCTTT-GTGCATCACCGCGTGGGCACCCTTT-GGGATC------ATCTCGGAGGGGG-CTCGCGTTTTCACACAAACACCCCC-TTT-AAAAAGTGTAGAATGAACTCATTCATGCGCTAACCCGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAACCTCAACCTCCTTGGTTT-CTTCTGGAGACCAAAGCAGGCTTGGACTTTGGAGGCCTTTGCTGGCACCTC----TTTT-GGAGGCCAGCTCCTCTTAAACAAATTAGCAGGGTCCTCTTTGCCGATCCTTGACGTGTGATAAGATGTTTCCATGTCTTGGTTTCTGGCTCTGTCACTTTTGGGACCTGCTTCTAACCGTCTGGACCTTGCGTCGAGACAACGTTCGAGCACGTCTCCCTTCTCGGGAAGCTCCCTCGACCCCCACGAACCC-TTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAAT---------- Lactarius_intermedius_ECM -------------------------------------GAACCTGCGGAAGGATCATTATCGTACAAA--ATGTGTGAGG-CACGCGAGGGCTGTCGCTGACTTTT----AACACAAAAAGTCGTGCACGCCAGAGTGTGTCCTCTC----ACAT-AAAATCCATCTCACCCTTTTGTGCACCACCGCGTGGGCACCCTTC-AGGGTCAAACCGATCCGGGAGGGGG-CTCGCGTTTTCACACAAACCCCCCCTTTT--AAAAGTGTAGAGTGACCCCATTTTTGCGATAACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAATCTCAACCTTCTCGGTTT-CTTCTGGACACCGAAGGAGGCTTGGACTTTGGAGGCCTTTGCTGGTGTCTCTCTCTTCT-GAAACCCAGCTCCTCTTAAATGAATTAGCGGGGTCCTCTTTGCTGATCCTCGACGTGTGATAAGATGTTTCCATGTCTTGGTTTCTGGCTCTGTTGCTCCTGGGACCCGCTTCTAACCGTCTCAACCTTGCATCGAGACAATGTTTGAGCGTGTCTCCCTTCTTGGGAAATGCTCTCAACCTC-ATGA--------------------------------------------------------------- Lactarius_intermedius_S -----------AAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAAA--ATGTGTGAGG-CACGCGAGGGCTGTCGCTGACTTTT----AACACAAAAAGTCGTGCACGCCAGAGTGTGTCCTCTC----ACAT-AAAATCCATCTCACCCTTTTGTGCACCACCGCGTGGGCACCCTTC-AGGGTCAAACCGATCCGGGAGGGGG-CTCGCGTTTTCACACAAACCCCCCCTTTT--AAAAGTGTAGAGTGACCCCATTTTTGCGATAACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAATCTCAACCTTCTCGGTTT-CTTCTGGACACCGAAGGAGGCTTGGACTTTGGAGGCCTTTGCTGGTGTCTCTCTCTTCT-GAAACCCAGCTCCTCTTAAATGAATTAGCGGGGTCCTCTTTGCTGATCCTCGACGTGTGATAAGATGTTTCCATGTCTTGGTTTCTGGCTCTGTTGCTCCTGGGACCCGCTTCTAACCGTCTCAACCTTGCATCGAGACAATGTTTGAGCGTGTCTCCCTTCTTGGGAAATGCTCTCAACCTC-ATGAACCCCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Lactarius_quieticolor -------------AGTCGTACCAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAACGTGTGTGTGAGG-TGTGTGAGGGCTGTCGCTGACTTTTT---GACACAAAA-GTCGTGCACGCCGGAGCACGTCCTCTCTCTCACAT-AAAATCCATCTCACCCTTTTGTGCACCACCGCGCGGGCACCCTTT-GGGAT-------------------G-CTTGCGTTTTCACACAAACCCC---TTTTAAAAAAGTGTAGAATGACCCCACTTT-GCGATGACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAATCTCAACCTTCTCGGTTTTCTTCTGGACACCGAAGGAGGCTTGGACTTTGGAGGCCTTTGCTGGCGTCTCTCT-------AGAGCCAGCTCCTCTTAAATGAATTAGCGGGGTCCTCTTTGCCGATCCTTGACATGTGATAAGATGTTTCCATGACTCGGTTTCTGGCTCTGTTGCATTTGGGACCTGCTTCTAACCGTCTCGAC--------GAGACGACGTTTGGGCGTGTCTCCCTTCTCGGGAGACTCTCTCGACCCC-ACGAACCC-TTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAA-------- Lactarius_salmonicolor_ECM ---------------------CAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAAA--ATGTGTGAGG-CGCGTGAGGGCTGTCGCTGACTTTT----AACACAAA-GGTCGTGCACGCCGGAGCGCGTCCTCTC----ACAT-AAAATCCATCTCACCCTTTTGTGCACCACCGCGTGGGCACCCTTT-GGGATCAAACCGATCCAGGAGGGTG-CTTGCGTTTTCACACAAACCCC---TTTT-AAAAAGTGTAGAATGACCCCATTTT-GCGATGACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAATCTCAACCTTCTCGGTTTTCTTCTGGACACCGAAGGAGGCTTGGACTTTGGAGGCCTTTGCTGGCGTCTCTCTCTTTTTGAGAGCCAGCTCCTCTTAAATGAATTAGCGGGGTCCTCTTTGCCGATCCTCGACATGTGATAAGATGTTTCCATGTCTTGGTTTCTGGCTCTGTTGCCTTTGGGACCCGCTTCTAACCGTCTCAAC--------GAGACAACGTTTGGGCGTGTCTCCCTTCTCGGGAAACTCTCTCAACCCC-ACGAACCC-TTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCA------------ Lactarius_salmonicolor_S1 -------AGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAAA--ATGTGTGAGG-CGCGTGAGGGCTGTCGCTGACTTTT----AACACAAA-GGTCGTGCACGCCGGAGCGCGTCCTCTC----ACAT-AAAATCCATCTCACCCTTTTGTGCACCACCGCGTGGGCACCCTTT-GGGATCAAACCGATCCAGGAGGGTG-CTTGCGTTTTCACACAAACCCC---TTTT-AAAAAGTGTAGAATGACCCCATTTT-GCGATGACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAATCTCAACCTTCTCGGTTTTCTTCTGGACACCGAAGGAGGCTTGGACTTTGGAGGCCTTTGCTGGCGTCTCTCTCTTTTTGAGAGCCAGCTCCTCTTAAATGAATTAGCGGGGTCCTCTTTGCCGATCCTCGACATGTGATAAGATGTTTCCATGTCTTGGTTTCTGGCTCTGTTGCCTTTGGGACCCGCTTCTAACCGTCTCAAC--------GAGACAACGTTTGGGCGTGTCTCCCTTCTCGGGAAACTCTCTCAACCCC-ACGAACCC-TTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAAT---------- Lactarius_salmonicolor_S2 -------AGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAAA--ATGTGTGAGG-CGCGTGAGGGCTGTCGCTGACTTTT----AACACAAA-GGTCGTGCACGCCGGAGCGCGTCCTCTC----ACAT-AAAATCCATCTCACCCTTTTGTGCACCACCGCGTGGGCACCCTTT-GGGATCAAACCGATCCAGGAGGGTG-CTTGCGTTTTCACACAAACCCC---TTTT-AAAAAGTGTAGAATGACCCCATTTT-GCGATGACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAATCTCAACCTTCTCGGTTTTCTTCTGGACACCGAAGGAGGCTTGGACTTTGGAGGCCTTTGCTGGCGTCTCTCTCTTTTTGAGAGCCAGCTCCTCTTAAATGAATTAGCGGGGTCCTCTTTGCCGATCCTCGACATGTGATAAGATGTTTCCATGTCTTGGTTTCTGGCTCTGTTGCCTTTGGGACCCGCTTCTAACCGTCTCAAC--------GAGACAACGTTTGGGCGTGTCTCCCTTCTCGGGAAACTCTCTCAACCCC-ACGAACCC-TTGACCTCAAATCGGGTGAGACT----------------------------------- Lactarius_salmonicolor_S3 TAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAAA--ATGTGTGAGG-CGCGTGAGGGCTGTCGCTGACTTTT----AACACAAA-GGTCGTGCACGCCGGAGCGCGTCCTCTC----ACAT-AAAATCCATCTCACCCTTTTGTGCACCACCGCGTGGGCACCCTTT-GGGATCAAACCGATCCAGGAGGGTG-CTTGCGTTTTCACACAAACCCC---TTTT-AAAAAGTGTAGAATGACCCCATTTT-GCGATGACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAATCTCAACCTTCTCGGTTTTCTTCTGGACACCGAAGGAGGCTTGGACTTTGGAGGCCTTTGCTGGCGTCTCTCTCTTTTTGAGAGCCAGCTCCTCTTAAATGAATTAGCGGGGTCCTCTTTGCCGATCCTCGACATGTGATAAGATGTTTCCATGTCTTGGTTTCTGGCTCTGTTGCCTTTGGGACCCGCTTCTAACCGTCTCAAC--------GAGACAACGTTTGGGCGTGTCTCCCTTCTCGGGAAACTCTCTCAACCCC-ACGAACCC-TTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAAT---------- Lactarius_scrobiculatus_S1 -------------------------------------GAACCTGCGGAAGGATCATTATCGTACAAA--ATGTGTGAGG-CACGCAAGGGCTGTCGCTGACTTTT----AACACAAAA-GTCGTGCACGTCAGAGTGTGTCCTCTC----ACATT-AAATCCATCTCACCCTTTTGTGCACCACCGCGTGGGCACCCTTC-AGGATCAAACTGATCCGGGAGGGGG-CTTGCGTTTTCACACAAACCCCCCCTTTT--AAAAGTGTAGAATGACCCCATTTTTGCGATAACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAATCTCAACCTTCTCGGTTT-CTTCTGGACACCGAAGGAGGCTTGGACTTTGGAGGCCTTTGCTGGTGTCTCTCTCTTCT-GAAACCCAGCTCCTCTTAAATGAATTAGCGGGGTCCTCTTTGCTGATCCTCGACGTGTGATAAGATGTTTCCATGTCTTGGTTTCTGGCTCTGTTGCTCCTGGGATCCGCTTCTAATCGTCTCAACCTTGCATCGAGACAATGTTTGAGCGTGTCTCCCTTCTCGGGAAACGCTCTCAACCCC-ACGAACCC-TTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Lactarius_scrobiculatus_S2 -AGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAAA--ATGTGTGAGG-CACGCAAGGGCTGTCGCTGACTTTT----AACACAAAA-GTCATGCACGTCAGAGTGTGTCCTCTC----ACATT-AAATCCATCTCACCCTTTTGTGCACCACCGCGTGGGCACCCTTC-AGGATCAAACTGATCCGGGAGGGGG-CTTGCGTTTTCACACAAACCCCCCCTTTT--AAAAGTGTAGAATGACCCCATTTTTGCGATAACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAATCTCAACCTTCTCGGTTT-CTTCTGGACACCGAAGGAGGCTTGGACTTTGGAGGCCTTTGCTGGTGTCTCTCTCTTCT-GAAACCCAGCTCCTCTTAAATGAATTAGCGGGGTCCTCTTTGCTGATCCTCGACGTGTGATAAGATGTTTCCATGTCTTGGTTTCTGGCTCTGTTGCTCCTGGGATCCGCTTCTAATCGTCTCAACCTTGCATCGAGACAATGTTTGAGCGTGTCTCCCTTCTCGGGAAACGCTCTCAACCCC-ACGAACCC-TTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Lactarius_semisanguifluus -AGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAA--CATGTGTGAGG-CGTGCGAGGGCTGTCGCTGACTT----------CAAA--GTCGTGCACGCCGGAGCGCGTCCTCTC----ACATTAAAATCCATCTCACCCTTTTGTGCACCACCGCGTGGGCACCCTTTTGGGATCGAATCGATCCAGGAGGGGGGCTTGCGTTTTCACACAAACCCC---TTTT-AAAAAGTGTAGAATGACCCCACTTT-GCGATGACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAATCTCAACCTTCTCGGTTTTCTTTTGGACACCGAAGGAGGCTTGGACTTTGGAGGCCTCTGCTGGCGTCTCTCTCTTCTTGAGAGCCAGCTCCTCTTAAATGAATTAGCGGGGTCCTCTTTGCCGATCCTCGACATGTGATAAGATGTTTCCATGACTTGGTTTCTGGCTCTGTTGCCTTTGGGACCCGCTTCTAACCGTCTCGAC--------GAGACAACGTTTGGGCGAGTCTCCCTTCTCGGGAAACTCTCTCAACCCC-ACGAACCC-TTGACCTCAAA----------------------------------------------- Lactarius_subsericatus_ECM ------AAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAAA--ATGTGAGGGG-CATGCAAGGGCTGTCGCTGACT-----------CAA--TGTCGTGCACGCCCGGGTGTGTTTCCTC----ACATAATAATCCATCTCACCCTTT-GTGCATCACCGCGTGGGCACCCTTT-GGGATC------ATCTCGGAGGAGG-CTCGCGTTTTCACACAAACACCCC-TTTT-AAAAAGTGTAGAATGACCTCATTTATGCGCTAACCCGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAACCTCAACCTCCTTGGTTT-CTTCTGGAGACCAAAGCAGGCTTGGACTTTGGAGGCCTTTGCCGGCACCTC----TTTT-GGAGGCCAGCTCCTCTTAAACAAATTAGCAGGGTCCTCTTTGCCGATCCTTGACGTGTGATAAGATTTTTCCATGTCTTGGTTTCTGGCTCTGTCACTTTTGGGACCCGCTTCTAACCGTCTGGACCTCGCGTCGAGACAACGTTCGAGCACGTCTCCCTTCTCGGGAAGCTCCCTCGACCCCCACGAACCC-TTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCA------------ Lactarius_subsericatus_S1 --GAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAAA--ATGTGAGGGG-CATGCAAGGGCTGTCGCTGACT-----------CAA--TGTCGTGCACGCCCGGGTGTGTTTCCTC----ACATAATAATCCATCTCACCCTTT-GTGCATCACCGCGTGGGCACCCTTT-GGGATC------ATCTCGGAGGAGG-CTCGCGTTTTCACACAAACACCCC-TTTT-AAAAAGTGTAGAATGACCTCATTTATGCGCTAACCCGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAACCTCAACCTCCTTGGTTT-CTTCTGGAGACCAAAGCAGGCTTGGACTTTGGAGGCCTTTGCCGGCACCTC----TTTT-GGAGGCCAGCTCCTCTTAAACAAATTAGCAGGGTCCTCTTTGCCGATCCTTGACGTGTGATAAGATTTTTCCATGTCTTGGTTTCTGGCTCTGTCACTTTTGGGACCCGCTTCTAACCGTCTGGACCTCGCGTCGAGACAACGTTCGAGCACGTCTCCCTTCTCGGGAAGCTCCCTCGACCCCCACGAACCC-TTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Lactarius_subsericatus_S2 -------------------------------------GAACCTGCGGAAGGATCATTATCGTACAAA--ATGTGAGGGG-CATGCAAGGGCTGTCGCTGACT-----------CAA--TGTCGTGCACGCCCGGGTGTGTTTCCTC----ACATAATAATCCATCTCACCCTTT-GTGCATCACCGCGTGGGCACCCTTT-GGGATC------ATCTCGGAGGAGG-CTCGCGTTTTCACACAAACACCCC-TTTT-AAAAAGTGTAGAATGACCTCATTTATGCGCTAACCCGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAACCTCAACCTCCTTGGTTT-CTTCTGGAGACCAAAGCAGGCTTGGACTTTGGAGGCCTTTGCCGGCACCTC----TTTT-GGAGGCCAGCTCCTCTTAAACAAATTAGCAGGGTCCTCTTTGCCGATCCTTGACGTGTGATAAGATTTTTCCATGTCTTGGTTTCTGGCTCTGTCACTTTTGGGACCCGCTTCTAACCGTCTGGACCTCGCGTCGAGACAACGTTCGAGCACGTCTCCCTTCTCGGGAAGCTCCCTCGACCCCCACGAACCC-TTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Lactarius_subsericatus_S3 TAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAAA--ATGTGAGGGG-CATGCAAGGGCTGTCGCTGACT-----------CAA--TGTCGTGCACGCC{CT}GGGTGTGTTTCCTC----ACATAATAATCCATCTCACCCTTT-GTGCACCACCG------CACTCTTT-GAGA-CACACCGATCCAG?????????????????????ACAAACACCCC-TTTT-AAAAAGTGTAGAATGACCTCATTTATGCGCTAACCCGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAAACCTCAACCTCCTTGGTTT-CTTCTGGAGACCAAAGCAGGCTTGGACTTTGGAGGCCTTTGCCGGCACCTC----TTTT-GGAGGCCAGCTCCTCTTAAACAAATTAGCAGGGTCCTCTTTGCCGATCCTTGACGTGTGATAAGAT{AT}TTTCCATGTCTTGGTTTCTGGCTCTGTCACTTTTGGGACCCGCTTCTAACCGTCTGGACCTCGCGTCGAGACAACGTTCGAGCACGTCTCCCTTCTCGGGAAGCTCCCTCGACCCCCACGAACCC-TTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATA--------- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_rDNA) = N: 1-794; CODONPOSSET CodonPositions (CHARACTERS = ITS_rDNA) = N: 1-794; END; [ The following blocks are output data for analysis step 1048 ] BEGIN TREES; TITLE Tb5824; LINK TAXA = TaxaForAnalysisStep1048; TREE Fig._9 = [&R] ((((Lactarius_salmonicolor_S1,Lactarius_salmonicolor_ECM,Lactarius_salmonicolor_S2,Lactarius_salmonicolor_S3),(((Lactarius_deterrimus_S1,Lactarius_deterrimus_S2),(Lactarius_deliciosus_u80999,Lactarius_quieticolor)),Lactarius_semisanguifluus))Dapetes_section,((Lactarius_intermedius_S,Lactarius_intermedius_ECM),(Lactarius_scrobiculatus_S1,Lactarius_scrobiculatus_S2))Zonarii_section)Piperites_subgenus,((Lactarius_subsericatus_S1,Lactarius_subsericatus_ECM,Lactarius_subsericatus_S2,Lactarius_subsericatus_S3,Lactarius_cf._fulvissimus),Lactarius_fulvissimus)'Russularia subgenus/Russularia section')Lactarius; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3603] END;