#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 22, 2024; 7:16 GMT TreeBASE (cc) 1994-2008 Study reference: Vondrak J., Frolov I., Riha P., Hrouzek P., Palice Z., Nadyeina O., Halici G., Khodosovtsev A., & Roux C. 2013. New discoveries in biodiversity of Teloschistaceae lichen crusts in Central Europe north of the Alps. Fungal Diversity, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13908] [ The following blocks are input data for analysis step 10824 ] BEGIN TAXA; TITLE TaxaForAnalysisStep10824; DIMENSIONS NTAX=23; TAXLABELS Caloplaca_aractina_GU723413 Caloplaca_areolata_Croatia Caloplaca_areolata_Montenegro Caloplaca_areolata_Spain Caloplaca_atroflava_HQ234606 Caloplaca_atroflava_HQ611276 Caloplaca_ceracea_HQ234600 Caloplaca_ceracea_HQ234603 Caloplaca_demissa_353961 Caloplaca_emili_Bulgaria Caloplaca_emili_Bulgaria_Rhodopes Caloplaca_emili_Czech_Republic_1 Caloplaca_emili_Czech_Republic_2 Caloplaca_emili_France Caloplaca_emili_Greece Caloplaca_erythrocarpa_EU639591 Caloplaca_fuscoatroides_HQ234599 Caloplaca_fuscoatroides_JN813404 Caloplaca_haematites_JN641769 Caloplaca_soralifera_JN641780 Caloplaca_teicholyta_EU639593 Caloplaca_tianshanensis_GU552276 Caloplaca_xerica_JN641792 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16011] TITLE ITS_Caloplaca_emili_group; LINK TAXA = TaxaForAnalysisStep10824; DIMENSIONS NCHAR=501; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Caloplaca_aractina_GU723413 CCGAGAGGGGGGCCCCAGCGCCCC-AGGGG-TCGTGCCCCGCACCTTTCCACCCTTT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCACGCCCCGGCGCTG-CCCCCCACAAGGGGCTCGCGAGCGCCCGCC-GAAGGCCCATCAAAAC-CCTGTTT--TTCAGTGCAGTCTGAGTCG--ACGAGAATAAA-CTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCCTCCCT----TCCGGGGGGGCGCGCCCGAAATTCAGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA-TATT--TCGCTTT-GGAAGCCTTCTGCCGGTGG Caloplaca_areolata_Croatia CCGAGAGGGGGGCTTACGCGCCCC-AGGGG-TTCCGCCCCGCGCCTTTCTACCCTGT-GTGTATTTTCCACTGTTGCTTTGGCGGGCCCTGGGGCTCACGTCCCGGCGCTG-CCCCT-GTACGGGGTTCGCGAGCGTCCGCC-GAAGGCCTATCATCAA-TCTGTTT--TTCAGTGCAGTCTGAGTAT--ACGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCACTGCTTGGTATTGGGTGTTCGCC-TTCCCC-----TGGGGGGGCGTGCCTGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGCAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGACGG Caloplaca_areolata_Montenegro CCGAGAGGGGGGCTTACGCGCCCC-AGGGG-TTCCGCCCCGCGCCTTTCTACCCTGT-GTGTATTTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCACGTCCCGGCGCTG--CCCTTGTACGGGGTTCGCGAGCGTCCGCC-GAAGGCCTATCATCAA-TCTGTTT--TTCAGTGCAGTCTGAGTAT--ACGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCACTGCTTGGTATTGGGTGTTCGCC-CTCC-----------GGGGCGTGCCTGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGCAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGACGG Caloplaca_areolata_Spain CCGAGAGGGGGGCTTACGCGCCCC-AGGGG-TTCCGCCCCGCACCTTTCTACCCTGT-GTGTATTTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCACGTCCCGGCGCTG-CTCCT-ATACGGGGTTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT--ATCAGGGCCGTCTGAGTAT--ATGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCACTGCTTGGTATTGGGTGTTCGCC-TTCC-----------GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_atroflava_HQ234606 CCGAGAGGGGG-CTCAC?CGCCC--AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCACGTCCCGGCGCTG-CCCCT-ATAAGGGGTTCGCGAGCGCCCGCC-GAAGGCCCATTATCAA-TCTGTTT--ATCAGTGCCGTCTGAGTAC--ATGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTA?TGGGTGCTCGCC-TTCC-----------GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_atroflava_HQ611276 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCATTGTTGCTTTGGCGGGCCCCGGGGCTCACGTCCCGGCGCTG-CCCCT-AGAAAGGGCTCGCGAGCGCCCGCC-GAAGGCCCATTATCAA-TCTGTTT--ATCAGTGCCGTCCGAGTAC--AAGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCCCGCC-TTCC-----------GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGC-TTCTACCGGTGG Caloplaca_ceracea_HQ234600 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCATCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCATTTCCCGGCGCTG-CCCCT-GCAAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT-TATCA-TGCAGTCTGAGTAT--ACGAAAATCAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCATCCC-----TCTAGGGTGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_ceracea_HQ234603 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCATCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCATTTCCCGGCGCTG-CCCCT-GCAAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT-TATCA-TGCAGTCTGAGTAT--ACGAAAATCAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCATCCC-----TCTAGGGTGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_demissa_353961 TCGAGAGGGGGG-TCTCGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTTT-GTGTACCTTCCATTGTTGCTTTGGCGGGCCCCGGGGCT-TT--CCCGGCGCTGGTCCCCTTCTGGGGGTTCGCGAGCGCCCGTC-AGAGACCCGTTAAAAA-TCTGTTT-TATCAGTGCAGTCCGAGTCGAAACAAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCCTTGCTTGGTACTGGGTGCTCGCCCCCGC-----------GGAGCGCGCCCGAAATCTAGTGGCGGTCCAGGTGGACTTCAAGCGCAGCGAACTATTGTCCGCTTT-GGAAGCCTTCTGCCTGTGG Caloplaca_emili_Bulgaria ------------------------------------------ACCTTTCTACCCTTTTGTG{AG}-TCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAA{AG}GCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCTAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCCC----------GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_emili_Bulgaria_Rhodopes CCGAGAGGGGGGCTCACGCGTCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCC--------GGGGGGG---------------------------------------------------------------------------------- Caloplaca_emili_Czech_Republic_1 CCGAGAGGGGGGCTCACGCGTCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCC-------GGGGGGGG---------------------------------------------------------------------------------- Caloplaca_emili_Czech_Republic_2 CCGAGAGGGGGGCTCACGCGTCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC-AATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCC-------GGGGGGGG---------------------------------------------------------------------------------- Caloplaca_emili_France CCGAGAGGGGGGCTCACGCGTCCC-AGGGGTTTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCC-------GGGGGGGGC--------------------------------------------------------------------------------- Caloplaca_emili_Greece CCGAGAGGGGGGCTCACGCGTCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCCC-------TGTGGGG---------------------------------------------------------------------------------- Caloplaca_erythrocarpa_EU639591 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-GTTTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCAGTGTTGCTTTGGCGGGCCCCGGGGTTCACCTCCCGGCGCCG-TCCCT-GTAAGGGGCCGGTGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTTATATCGGTGTGGTCTGAGGAT--ACGAAAATAAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGC--TTCCCCTCCTGCGGGGTGGCGCGCCCGAAATTCAGTGGCGGTCCCGGCGGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGAC-TCTGCCCGTGG Caloplaca_fuscoatroides_HQ234599 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTTATTTCCCGGCGCTG-CCCCT-GCAAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT-TATCA-TGCAGTCTGAGTAT--ACGAAAATCAATTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCATCCC-----TCTAGGGTGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTACAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_fuscoatroides_JN813404 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCTACTGTTGCTTTGGCGGGCCCCGGGGCTTATTTCCCGGCGCTG-CCCCT-GCAAGGAGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT-TATCA-TGCAGTCTGAGTAT--ACGAAAATCAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCATCCC-----TCTAGGGTGGTGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTACCGGCGG Caloplaca_haematites_JN641769 CCGAGAGGGGGGGTTTCGCGCCCC-AGGGG-CTTCGCCCCGTACCTTTCCACCCTTT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCTTGTCCCGGCGCCG-CCCCCCACCAGGGGCTCGCGAGCGCCCGCC-GAAGGCCCATGAAAAT-CCTGTCT--TTCAGTGCAGTCTGAGTAT--ACGAGAATGAA-CTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTACTCCGGGGGGCATGCCTGTTCGAGCGTCATTAC-TCCCTCAAGCAATGCTTGGTATTGGGTGCTCGCCCTTCCT----TCCGGGGGGGCGCGCCCGAAATTCAGTGGCGGTCCCGGCGGACTTCAAGCGTAGTAAA-TACC--CCGCTTT-GGAAGCCTTTCG------- Caloplaca_soralifera_JN641780 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCCCTGTTGCTTTGGCGACCCCGGGGGCTC-CGTCCCGGCGCTG-CCCCT-ATATAGGGCTCGCGAGCGCCCGCC-GAAGGCCCACTATCAA-TCTGTTT--ATCAGTGCCGTCTGAGTAT--AAGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATACCTGTTCGAGCGTCATTACACACCTCAAGCACTGCTTGGTATTGGGTGCCCGCCCTC-----------GAGGGGCGCGCCCGAAATCCAGTGGCGGTCCCGGTGGACTTCAAGCGTAGTAAA-TATT--CCGCTTTTGGAAGCC-TCCGCCGGCGG Caloplaca_teicholyta_EU639593 CCGAGAGGGGGGCTAACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGTTCACCTCCCGGCGTCG-TCCCT-GTAAGGGGCTGGCGAGCGCCCGCCCGAAGGCCCATCATCAA-TCTGTTT--ATCAGTGTGGTCTGAGGAT--ACGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGC--TTCCCCTC-TGCGGGGTGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGAC-TCCGCCGGTGG Caloplaca_tianshanensis_GU552276 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTT-GTGTATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCCCAGGTCCCGGCGCTGGCCCCTTATCAGGGGTTCGCGAGCGCCCGCC-GAAGGCCCATCATAAA-CCTGTTT-TATCAGTGCAGTCTGAGTAT--ACGAAAATCAAAC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCTCTCAAGCACTGCTTGGTATTGGGTGCTCGCCCTTTC-----TTCCGGGGGGCGCGCCCGAAATTTAGTGGCGGTCTCGGTGGACTTCAAGCGCAGTAAA-TATT--CCGCTTT-GGAAGCCTTCCGCCGG--- Caloplaca_xerica_JN641792 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCTCCGGGGCTCACGTTTCGGCGCTG-CCCCT-CC-CGGGGTTCGCGAGCGCCCGCC-GAAGGCCCATTATCAAACCTGTTT--ATCAGTGCAGTCTGAGTAT--GTGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACCGCTTGGTATTGGGTGCTCGTC-TT----------GGGGGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGCAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTACCGGTGG ; END; [ The following blocks are output data for analysis step 10824 ] BEGIN TREES; TITLE Bayesian_inference_of_ITS_Caloplaca_emili_group; LINK TAXA = TaxaForAnalysisStep10824; TREE Bayesian_inference_Emili = [&R] (Caloplaca_demissa_353961:0.573965,(Caloplaca_haematites_JN641769:0.301614,Caloplaca_aractina_GU723413:0.139912)0.97:0.103276,((((Caloplaca_areolata_Spain:0.058942,(Caloplaca_areolata_Montenegro:0.021908,Caloplaca_areolata_Croatia:0.021506)1.00:0.118368)0.95:0.070257,(Caloplaca_emili_Bulgaria_Rhodopes:0.012421,Caloplaca_emili_France:0.012191,Caloplaca_emili_Bulgaria:0.035776,Caloplaca_emili_Czech_Republic_1:0.012062,Caloplaca_emili_Czech_Republic_2:0.012977,Caloplaca_emili_Greece:0.035372)1.00:0.192444)0.99:0.074217,((((Caloplaca_fuscoatroides_JN813404:0.05139,Caloplaca_fuscoatroides_HQ234599:0.020977)0.78:0.01954,(Caloplaca_ceracea_HQ234600:0.009943,Caloplaca_ceracea_HQ234603:0.010049)0.95:0.022405)1.00:0.098537,(Caloplaca_teicholyta_EU639593:0.055218,Caloplaca_erythrocarpa_EU639591:0.136461)1.00:0.151674)0.97:0.063357,(((Caloplaca_atroflava_HQ611276:0.084217,Caloplaca_soralifera_JN641780:0.187409)1.00:0.06103,Caloplaca_atroflava_HQ234606:0.017746)0.96:0.039707,Caloplaca_xerica_JN641792:0.168093)0.71:0.034197)0.75:0.039153)0.93:0.055326,Caloplaca_tianshanensis_GU552276:0.149081)0.96:0.082357); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr60893] END;