#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 10, 2024; 12:43 GMT TreeBASE (cc) 1994-2008 Study reference: Fan D., Yue J., Nie Z., Li Z., Comes H., & Sun H. 2013. Phylogeography of Sophora davidii (Leguminosae) across the "Tanaka-Kaiyong Line", an important phytogeographic boundary in Southwest China. Molecular Ecology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13583] [ The following blocks are input data for analysis step 10855 ] BEGIN TAXA; TITLE TaxaForAnalysisStep10855; DIMENSIONS NTAX=32; TAXLABELS Phaseolus_coccineus_ Piptanthus_nepalensis_ Salweenia_wardii Sophora_davidii_C1 Sophora_davidii_C10 Sophora_davidii_C11 Sophora_davidii_C12 Sophora_davidii_C13 Sophora_davidii_C14 Sophora_davidii_C15 Sophora_davidii_C16 Sophora_davidii_C17 Sophora_davidii_C18 Sophora_davidii_C19 Sophora_davidii_C2 Sophora_davidii_C20 Sophora_davidii_C21 Sophora_davidii_C22 Sophora_davidii_C3 Sophora_davidii_C4 Sophora_davidii_C5 Sophora_davidii_C6 Sophora_davidii_C7 Sophora_davidii_C8 Sophora_davidii_C9 Sophora_flavescens Sophora_moorcroftiana_ Sophora_prazeri_ Sophora_tomentosa Sophora_tonkinensis_ Thermopsis_alpina Trifolium_repens_ ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16084] TITLE cpDNA_dataset_for_monophyly_assessment; LINK TAXA = TaxaForAnalysisStep10855; DIMENSIONS NCHAR=1199; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Phaseolus_coccineus_ TCGAAATCATAATAACCAATTCTTTAGTCAATCGTCGAGATTGAAAGAATCCATT--AAAG------TGCAATATTTATTTAGTACATT--------TCTTTGAC------TAAACATTTAG--TATAAATTCATAATT--ATAAGTAAAT--TTGAAATTTGGATTTATTCTAATATCAAAA----TATATT------------------AATATATATATAGAAAATAGAGAAATATATGATAGAT-------------AGAATATAGA-ATGTT-----------TTGA---TTTCTAGTGGAATGGA---ATGGGTTT---------------TT------------------CGTAGTTTACATGCAA-------------ATTAAAAAATAGCCC---TGTTGAAACTATAACTATGT-AGTT---CTGACTTCAATCCAGTA--ATGAAAAAGAACATTTTTAT----TGTAGTTGCTTATGACTCATTTTTTAGTTATTTCATTTTATGACTCTAAAGAAATACATTTC---TATTTTTGGAATGAAAGCAAATTATA--GTTAATTAATATAT--ATATC-TAAAATTTAACACTACATTCAAAAAAATG----AAAAAATGAGATTAGATATATA----ATCTAGT--CTTGGCTA---CATTCGCCCT------ATACT---------ATGTCTAAA----TGACATA-ACTT-----TTTAGACCT---TTT---CATTATCATTTTTTTTTTC-----------TTCATTTTACATTATGAAGTCATATGTA--TTACAAAAAGATCA----AAAAGATT---------GATGAG---------AAAAATGCATAAATGAAAG-------ATTAC----TAAATAAAAAAAAAGA--AAACTCAAAATTTACAAATTAATTTAGTTGACATGAAAGAAGGGTGCTCGATG-CTAAAGAA-TATGGAAGTTAATAAAAAATTGAT----TAATTTCTGTATA-------TGTATACAGAAAAAGACTA-----------CTAACAAAAAGTAAAGGGGAGAGTAATATC-AACGATA--TTATTCCCTTACCCCCTTTACTTT---CA--AAAA----------CTCGTATCCTTCTTT----------AAAACCAAAATATT--------ATCCATTT----ATAG Piptanthus_nepalensis_ TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAATTAAAAAA-----TTGTAATATTTTTTAGT-----CA-------ACGTTAA----AA--TAAGAATTCTATTAT-----ATAAATT--ATAATATA----TTATAATTTATATAATAGAATTCTTATTTA---TTATATTTAATATTTATTATATTTAATATTTATTATATTTAATAT-TTATTATATTTAATAT-------------TTATTATATTTAATA------------TTTATTATATTTAATATTTATTA-TATTTAATTTATTAGAAATATTT--AT------------------TAGAATAAATA------------------ATTATAGACAATTA-------TA-TATTAA-----------ATATTCTATTGTATATT---------AGAAAATA-TTCTTTGAA----TTCAGCTATTTCAGATT-ATTCCAACTTT-TTCTATTTG----TTACACAAAAAAACTTTTT--GAATTCCCCG--TAGAAATAGATTGCGCTAAAGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAAGTTTTCCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTAC---ATCCGCCCCTAC----TACTAT---------GTAAAAA----TTACCTAGACTTCAA--TTTCAACCC---TTT---CGTTATCATTCTTTTTTCTT-----------------------------------------ATAAGATAAAATA-----AACCA-----GA----AATGGA----------AACAT---TTA--------------------------------------------------------AATATAA-----------------------------------------------TATAAATAAA------------GAAGTAA------------------------AA---------------------------GTAAAG----GAGCAATA---GAAAAAACT-CTG--TTGCTCC---TTTACTTTT--AA--AAA-----------CTCGTATACTTTAA-----------GACCTA--AATATT--------ATCCATTT----AGAG Salweenia_wardii TCGAAATCATAATAACGGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAATTTAAAAA------TGTAATATTTTTTAGT-----CA-------ACATTAA---AAT-----GATA-----AAT-----AAGAATT--CTA---------TTATAATTTA------------------------TATAAT------------------AGAATTCTTAT----------TTATTTT--------------------------TA--TTTA-------------------------TGAGAATAAA-------A-AATTTA-----------------------------------ATAATAAATA------------------ATTATAGACAATT-------CTA-TATGAA-----------ATATTCTATTGTATATT---------AGAAAATA-TTCTTTGAA----TCCAGTTAATTCAGATT-ATTCCAACTTT-CTCTATTTG----TTACACAAAAAAACTTTTT--GAATTCCCCG--TAGAAATAGATTGCGCTAAAGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAAGTTTTCCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTAC---ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TGACCTAGACTTCAA--TTTCAACCC---TTT---CGTTATCATTCTTTTTCTTCTAA-------------------------------------GATAAGATAAAATA-----AACAAAAAATGA----AATGGA----------AACAT---TCATTTTTTG------TTTATC----CTTTTTGGAATAC-ATATGACTTCGCAAGCAGCAATGTCA------------AAAATAAA---------------GACT--------TCTAAATAAA------------GAAGTAT----------A----CGAGTTTTTAAAG-------------------------GTAAAG----GAGCAATA---GAAACT----CTA-------CC---TTT--------AA--AAA-----------CTCGTATACTTTAACTTTAAGACCCAAACCA--AATATT--------ATCCATTT----ATAA Sophora_davidii_C1 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATT------------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATTTTATT--------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTC-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTCA-----------ATATTCTATTGTATATTAGATA--TTCGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTATCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C10 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT-----------------GAAGTATAAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C11 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTG----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT-----------------GAAGTATAAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C12 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTTT---------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C13 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATATAT----------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTT----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C14 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAATTATAAATTATAGTATAATAGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAATAAATAA----AATGGA----------AACAT---TTTTTTT----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C15 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAATTATAAATTATAGTATAATAGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAATAAATAA----AATGGA----------AACAT---TTTTTTT----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C16 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTT----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C17 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTG----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C18 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---AATGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAATTCTATATTAAATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTT----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C19 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---AATGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAATTCTATATTAAATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTG----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT-----------------GAAGTATAAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C2 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATT------------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATTTTATT--------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTC-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTCA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTATCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C20 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTG-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTG----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT-----------------GAAGTATAAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C21 TTGAAATCATAATAACCGATT-TTGAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTG----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT-----------------GAAGTATAAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C22 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACT----------G-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTG----------ATC-------TTTTTGGAATCC-ATATGACTTCGAAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C3 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATT------------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATTTTATT--------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTC-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTCA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTATCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AAAAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C4 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATT-ATAT---------TATTATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATTTTATT--------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTC-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTCA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTATCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C5 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATT------------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATTTTATT--------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTC-TAAA-AATTTAT-----ATAT------------------------AATAATAAATATAAATA------------ATTATAGACAATTAA---TTCTA-TATTCA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTATCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------GA-----AATAA-----------AATGGA----------AACAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C6 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATT------------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTC-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTCA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTATCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------GA-----AATAA-----------AATGGA----------AACAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C7 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C8 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTT----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C9 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTG----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_flavescens TCGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAATTAAAAAAA---AATGTAATATTTTTTAGTTA-GTCA-------ACATTAA----GA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAATTT------------------A--------TAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAATTTTATTTATTAG-----------TTTA------TTAGAATAAATTA-TAAA-AATTTAA-----ATAATT--AT------------------TAATATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGAATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCCCG--TAGAAATAGATTGCGCTAAAGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAAGTTTTCCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTAC---ATCCGCCCCTAT-----ACTATACT----ATGTAAAAA----TTACTTAGACTTCAA--TTTCAACCC---TTTTTTCGTTATCATTCTTTTTTATCT---------------------------------------TCTAAGATAAAATA-----AACAAAAAATGA----AATGGA----------AACATTCTTTTTTTTG-----T-TTATCC-----TTTTTTGGAATAC-ATATGACTTCGCAAGC---AATGTAA------------CAAAAAAAA--------------GACTT-CT-----AAAAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TCGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_moorcroftiana_ TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAA----AATGGAATATTTTTTAGTCAACATA-------AAAATAATAATAA-ATAAGAATT---CTAT----TATAAATT--ATATTA----TAATAGAATTCTTA--------------TTTA---TTTTATT------------------AAAATTCTTATTTAT------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAA-AAATTTA-----TATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATCTTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCCTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGGTAC---CTCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTTT-----------------------------------------------------------A-----AATAA-----------AATGGA----------AACAT---TTTTTTT---------TATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAA--------------A---A-AGAC-TTCTAAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATCCTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_prazeri_ TCGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAAA---AATGTAATATTTTTTAGTTAACTTTTAGTCA-ACATTAA----GA--TAATAATAA---AATT----AAGA-TA--ATAAA-------T---------------------------------------A-----------------AGAATTCTTAT----------TTATT-----------ATC------TTAATTTTTATTTA--TTAG-----------TTTATT---------ATAAAAAT-TAAAATA--TAA-AAA-TAAA-----------------------TAATTATAGATAATTA--------------ATTCTAT---ATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTCGAAAATA-TTCTTTGAA----TCCAGTTAATTCGAATT-ATTCCAACTTT-CTATATTTC----TTACACAAAAAGACTTTTT--GAATTCCCCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCTCTCTTTTTCCAAAAAGTTTTCCGAATTCTTTTTTTTGATATAAA-AGTACGTTTTTTCT-GGCTC-----TCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTAGACTTCAA--TTTCAACCC---CTTTTTCGTTATCATTCTTTTTTAT---------------------------------------------------------CT----------TCTAAGATA-GGA------------------------------------------------------------------T--AA------AATAAA------------CAAAAAAAA-----------------CTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTTTTTAAAA----------CTTGTATACTTTAA-----------AACCCC--GATATTATCTATTTATCCATTT----ATAG Sophora_tomentosa TCGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAATTAAAAAAA--AAATGTAATATTTTTTAGT-TAGTCA-------ACATAA---------TAA-AATA----AAT-----AAGAAATTTCTA---------TTATAATTT------------------ATA-------AATA-----------------AGAATTCTTAT----------TTATTTTTTTTTTTTTTTTTTATTTA--------TTATTTATAAAAATTGAAATA-ATTATTAATATAAAAATAAATT---AAAAAATTTA------ATATT-----------------------AATAATAATAGACAATTA-----------ATTCTAT---ATTAAATATTCTACTGTATA-----------TTAGCTATTTGTATATTAGATA--TTAGAAAAGA-TTCTTTGAA----TCTAGTTAATTCGAATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCCTG--TAGAAATAGATTGTGCTAATGAAAAAGATTTCAATGCTGTCCAATATCCCCCCTTTTCC-AAAAAGTT--CCGA-CTCTTTTA------------------------CTTGGCTAC---ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTATTTAGACTTCAA--TTTCAGCCC----TTTTTCGTTATCATTCGTTTTTAT------------------CT------TCTAAGATA-GG--------------ATAA----AATAAACAAAAAATGAAATGGA----------AACATTCTTTTTTTT---------TATCTT-----TTTTTGGAATAC-ATATGACTTCGCAAGC---AATGTAA-----------CAAAAAAAAAA-------------GAATT-CT-------AAAATAA-----------AGAAGTAT-----------------GAAGTATAAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TCGCTCC---TTTACTTTTTTA---AAAA----------ATCGTATACTTTAA-----------AAACCC--GATATT--------ATCCATTT----ATAG Sophora_tonkinensis_ TCGAAATCATAATAATCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAATTAAAAAA----AATGTAATATTTTTTAGT-----CA-------ACATTAA----GA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAATTTG--------------------------TAAT------------------AGAATTCTTAT----------TTATT------------------------AAATTTTATTTATTAG-----------TTTATT------AGAATAAATT-ATAAAAA-TTTAAATAA-TTATT-----AATATAAATAAAAAATTTAATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGAATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCCCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAAGTTTTCCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCT-----CTCCGCCC-TAT-----ACTAT---------GTAAAAA----TTACCTAGACTTCAA--TTTCAACCC---TTTTTTCGTTATCATTCTTTTTTAT-------------------CTTCTAAGATAGGATA-AA---ATAAACAAA----A-----AATGA-----------AATGGA----------AACATTCTTTTTTTT---------TATC-------TTTTTGGAATAC-ATATGACTTCGAAAGC---AATGTAACAAAAAA----AAAAAAAAAAA-----------AAGAATTTCT-------AAAAAAA------------GAAATAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TCGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Thermopsis_alpina TTGAAATCATAATAACCTATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAATTTAAAAA-----TTGTAATATTTTTTAGT-----CA-------ACGTTAA--------------------AAT-----AAGAATT--CTA---------TTATAATTTA------------------------TATAAT------------------AGAATTCTTAT----------TTATTTTT-----------------------ATTATATTTAAT-----------------------TTATTAGAAAT---------ATTTAT------T---------------------------AGAATAAATA------------------ATTATAGACAATT-------CTA-TATTAAATAAA------ATATTCTATTGTATATT---------AGAAAATA-TTCTTTGAA----TTCAGCTATTTCAGATT-ATTCCAACTTT-CTCTATTTG----TTACACAAAAAAACTTTTT--GAATTCCCCG--TAGAAATAGATTGCGCTAAAGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAAGTTTTCCGA---------------------------------CTTGGCTAC---ATCCGCCCCTAC----TACTAT---------GTAAAAA----TTACCTAGACTTCAA--TTTCAACCC---TTT---CGTTATCATTCTTTTTTCTT-----------------------------------------ATAAGATAAAATA-----AACCA-----GA----AATGGA----------AACAT---TCATTTTTTT-------CT-------CTTTTTGGAATAC-ATATGACTTCGCAAGC---AATATAA------------AAAATAAAGA-------------CTTCT-AAA---TATAAATAAA------------GAAGTAA------------------------AA---------------------------GTAAAG----GAGCAATA---GAAAAAACT-CTG--TTGCTCC---TTTACTTTT--TA--AAA-----------CTCGTATACTTTAA-----------GACCTA--AATATT--------ATCCATTT----AGAG Trifolium_repens_ TCGAAAGCATAATAACCAAAT-TGGAGTCAATTGTCGAGATTCAAAGAATCAATTCA--------AATACAATATTTGTTTACTAA-----------ACATTCA-------ATAA-AATAA---TTTT---AAAGAATT--CTA---------TTAGAATCTAT-------------TATA--------TAATG-----------------ATAATGTAAATTT--------CGAATCTCTT-------------------ATA-TATAT------------------------------AATGTAAATA--TCCTAAATTCA---------------T------------------AA--ATGAATATTCT--------------ATTAGATATCAA------TTTTA-TATGAA----------------TCTTTTTGTAT--------TTCAAAAAGA-TTCGTTGAA----TCAAGTTAATTGAAATT-ATTCTAACGTT--TGTATTTG----TTACAGAAAAAG-CTTTTA--GAATTCCCCG--TAAAAATAGATTGCGCTAATGAAAAAGCTTTTAATGCTGTAAAATATCCCTTCTTTTTCCATAAAGTGTTCCGAATAATTTTTTTTGAAATAGA-AGTACGTTTT--CTTGGCTAC---ATCCGCCCTTCT--TATACT---------ATCTAAAAAGGATCTATCTATATCTCAA--ATTCTACCC---TTT---CAATATCCTTTTTTTCTTTC------------------------------------GA----AAAAAGGAA--------AAAAA-----------GATAAG---------------------------------------------------GAATCATGAAAGAAATCAAAAAC------GT-A-----------TGTATAA------------------A----------TCTCAAAAAA------------AGATTACTAATC------------------CAAT--------------------------ATAAAG----GAGCAATATT-AACAAAGTTGATA--TTGCTCC---TTTATTTTCAAAC-AAAAA----------CTCGTCTACTTTTTTAAATT-----AAGATCAAAATTTT--------ATCCATTA----ACAG ; END; [ The following blocks are output data for analysis step 10855 ] BEGIN TREES; TITLE cpDNA_dataset_for_monophyly_assessment; LINK TAXA = TaxaForAnalysisStep10855; TREE Tree_1 = [&R] ((Phaseolus_coccineus_,((((Sophora_flavescens,Sophora_tomentosa),(Sophora_prazeri_,Sophora_tonkinensis_)),(Sophora_moorcroftiana_,((Sophora_davidii_C2,(Sophora_davidii_C5,Sophora_davidii_C6),Sophora_davidii_C4,Sophora_davidii_C1,Sophora_davidii_C3),((Sophora_davidii_C20,Sophora_davidii_C17,Sophora_davidii_C9,Sophora_davidii_C11,Sophora_davidii_C22,Sophora_davidii_C19,Sophora_davidii_C21),Sophora_davidii_C14,Sophora_davidii_C8,(Sophora_davidii_C13,Sophora_davidii_C12),Sophora_davidii_C10,Sophora_davidii_C7),Sophora_davidii_C16,Sophora_davidii_C15,Sophora_davidii_C18))),(Salweenia_wardii,(Thermopsis_alpina,Piptanthus_nepalensis_)))),Trifolium_repens_); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr60983] END;