#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 10:56 GMT

TreeBASE (cc) 1994-2008

Study reference:
Aguilera F., Mcdougall C., & Degnan B.M. 2013. Origin, evolution and classification
of type-3 copper proteins: Lineage-specific gene expansions and losses across
the Metazoa. BMC Evolutionary Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S13985]

[ The following blocks are input data for analysis step 11030 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep11030;
        DIMENSIONS NTAX=35;
        TAXLABELS
            Amphimedon_queenslandica_tyr
            Anopheles_gambiae_tyr1
            Anopheles_gambiae_tyr2
            Anopheles_gambiae_tyr3
            Anopheles_gambiae_tyr4
            Anopheles_gambiae_tyr5
            Anopheles_gambiae_tyr6
            Anopheles_gambiae_tyr7
            Anopheles_gambiae_tyr8
            Anopheles_gambiae_tyr9
            Aspergillus_nidulans_tyr1
            Aspergillus_nidulans_tyr2
            Bombyx_mori_tyr1
            Bombyx_mori_tyr2
            Ciona_intestinalis_tyr1
            Ciona_intestinalis_tyr2
            Ciona_intestinalis_tyr3
            'Ciona_intestinalis tyr4'
            Daphnia_pulex_tyr
            Dictyostelium_fasciculatum_tyr
            Drosophila_melanogaster_tyr1
            Drosophila_melanogaster_tyr2
            Drosophila_melanogaster_tyr3
            Epiperipatus_sp_Hc
            Euphrynichus_bacillifer_HcA
            Euphrynichus_bacillifer_HcB
            Limulus_polyphemus_HcA
            Limulus_polyphemus_HcB
            Mastigoproctus_giganteus_HcA
            Mastigoproctus_giganteus_HcB
            Polysphondylium_pallidum_tyr2
            Saccoglossus_kowaleksii_Hc
            Tribolium_castaneum_tyr1
            Tribolium_castaneum_tyr2
            Tribolium_castaneum_tyr3
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16278]

	TITLE alignment_betatype;
	LINK TAXA = TaxaForAnalysisStep11030;
	DIMENSIONS NCHAR=365;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360     ]
[                                           .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .     ]
Amphimedon_queenslandica_tyr       HSKDAQQRFPPPLKNHPFFSTKICTADTLHGHALLSYWRDDYDLNDSHYYWHMVYRGAVGDFDRHGEVFLYVHSQMVARYETESLCWSLPLVRPWQYDDFNGYAPISSGYPPFSTWYSIRNPRARLEEWRDNIYAAIRKGQFTTSKDPLVLTLNFVGGILDAQYPSLDEEYGNLHNYGLGKFAEMEKSPYGLTISNFGAPRDPCFWRWYKHLQYYGRLAATRYPQDITAHRAEVVLSNLVVRLDGHITTFLGPPAVNFMKAKLGHEPYEWNVQVKNPQTLTLRLFIAAEDMNDYHSWIEMDRATVQLTDESATKVRLDTDSSVARKMGNRYASAVFRHGWPQNLMLPVGKVEGMPFVAFCIATDD
Anopheles_gambiae_tyr1             HRPDTKDLELPAFAQTFFIDSKKYTASDLDVEHRLWYFREDLGVNLHHWHWHLVYPIEIVDKDRRGELFYYMHQQIIARYNAERLSNHMARVQPFNLDEPEGYFPKMDAYPPRFDNTRLSDGIDDMKRWRERIYEAIHQGYVDTNNEKIVLDIDILGNIIEASDLTPNSTYGDFHNMGHILIAYSHLEYAGVMGDASTAMRDPIFYKWHAFIDNMFQEHKRLPYEKQELSFPDVRVESIQVEQVNRLTTFWQESDVDMSFTHLQHHEFSYTIKVEATRYGYVRIFLAPKLEQQRLMMVELDKFVVTMPPGSHTITRNSTESSVIPFERTELQNFLCGCGWPQHMLIPKGRPEGLRFELFVMVSND
Anopheles_gambiae_tyr2             HRDDTRDVEIPSFLELFFVDPANYTASDRVDEQRVAYWREDIGLSLHHWHWHLVYPSTVVRKDRRGELFYHMHQQTIARYNIERFANGLARTLSFQLRESEAYFPKIVAFSCRYPNQVMKDRLADMDVSIKRIFEAIDNGYAATNGDRVPLDIDLIGDLLEASTNSINFNYGDYHQNGHVMLGYIYLEGVGVMGDLTTTMRDPLFYRWHQHIDDIFVRHKQRAYTSSELSFNDITVDSFDVQPKNVLLTFWQRSQFDLGFTHIQHAPFSYRIQATSMRRGTVRLFLGPKVRDQRRHMVELDKFTVNLRPGQNSIVRRSDESNLIPYERTMEVFQFCNCGWPSHMLLPKGSASGLEYDFFVMISND
Anopheles_gambiae_tyr3             HRSDTSDVPVPSFLHLFFIDPANYTASDRVTEQRLAYFREDIGVNLHHWHWHLVYPAEVVRKDRRGELFYYMHQQMIARYQVERYSQGLGRVTPLNLRTPEPYYPKILTYPARYANMTLEDIISEVERQLQRIIAAIDEGVVAPSGQRTQLDIDILGNIVESSTISVNRQYGDTHNSGHVLLSLVFLESFGVMGDVTTAMRDPVFYRWHTFVDSIFQRHKQRPYGPAELRNPGVNLLSLETEVKNTLLTFWQRSQFDLGFTHLQHAAFNYRLQVATAKPATLRIFLAPKREEQRRLAIEMDTFRVNLTPGINNIIRRSANSSVIPYERTDANFRFCGCGWPSHMLVPKGDQFGVEYDLFAMLSDD
Anopheles_gambiae_tyr4             HREDTKDVNIPSIVSLFFVDPANYTASDREDEQRMAYFREDIGVNMHHWHWHLVYPGDVVRKDRRGELFFYMHSQLIARYNADRFCAKLKKVRNLNYREPEGYYPKMISYPARAANTTLQDSVNDLERWRDRIHEAIDQGFVDKSGNRIMLDIDILGDVVEASSLTPNAQYGSLHNMGHNVIAYVYLEDYGVMGDVTTAMRDPIFYRWHGMIDGIFRRHKELPYTAEQLGNPGVTVNSVGVQPANVLLTYWQRSQVDLAFTHLQHAPFSFRVEVNAVRKGTLRIWLAPKSREQRRYFIEMDTSTVTLNPGMNTIVRRSDQSSVIPYERTLAQFRFCGCGWPQHMLVPKGSPEGVQFDLFAMVTDD
Anopheles_gambiae_tyr5             HRPDTKDLNIPSFLELFFVDPSNYTASDREDEQRLAYFREDIGVNLHHWHWHLVYPGEVVNKDRRGELFYYMHQQLIARYNVERFCNRLARVRPLNLREPEGYFPKIIAFPPRPQNTVLRDTVSDLERSESRIAESIDGGYVGPGGNRIPLDIDVLGNIMEPSALSVNSQYGNYHGNLHNIIAYSFLEGYGVVGEFQTAMRDPSFYRLHAQVDNMFHRYKRTPYNANQLNYNGIQIQSLGVQPANVLLTYWQRSQVDLAFTHLQHAPFTFRLTVNATRRGTCRIFIGPKVDEQRLLMIELDKFTVNLNPGTNNIVRRSEQSSVIPYERTTEQFRFCNCGWPHHLLIPKGTPEGMQFDLFAMISND
Anopheles_gambiae_tyr6             HRPDTKSVSVPSLLHLFFIDPANYTATDAEPEQRMAFFREDIGVNLHHWHWHLVYPASVVRKDRRGELFYYMHQQLLARYQIDRYAQGLGRIEPLNLREPEAYYPKLLTFCPRYPGMTISDRIADIESWLPRVLEAIDAGFASDDGVRVPLDIDVLGNILERSAISINRNYGDVHNMGHVLLAFIYLESSGVMGGVATAMRDPIFYRWHKFIDNIFLRNKARPYTMAELSNSNVTLEALETQAVNSFVTFWQRSQVDLRFTHLQCAPFVYRLRINSNRQDTVRIFLLPRQEDRRLLAIELDSFRVNLRPGMNNIVRQSSNSSVIPFERTNAQSRFCGCGWPAHMLLPKGNANGVEFDLFAMVSRD
Anopheles_gambiae_tyr7             HRPDTKNLNIPSFFDLFFVDPTNYTASDREDEQRLAYFREDIGVNLHHWHWHLVYPGEVVNKDRRGELFYYMHQQLIARYNVDRFCNRLSRVRPLSLREPEGYFPKIVGFPARPQNTILRDSITDIELWGSRIAESIDGGYVAPGGNRIPLDIDVLGNIIEPSALSVNSQYGNYHGHMHNLISFSFLEGYGVVGEFQTAMRDPAFYRLHAQVDNMFHRYKRTPYNANQIGYAGVQIQSFGVQPANVLLTYWQRSQIDLGFTHLQHAPFTYRFAVNAARRGTCRIFIAPKTDEQRLLMIELDKFRVNLTPGVNNIVRRSEQSSVIPYERTTEQFRFCNCGWPHHLLLPKGTAEGMKFDLFLMISND
Anopheles_gambiae_tyr8             HRTDTRDVEIPSFLELFYVDPANFTASDRVDEQRLAYWREDIGVNLHHWHWHLVYPARIVRKDRRGELFYYMHQQTMARYNIERFANGMPRVVAFNFREAEAYFPKITSYPARHPNETLSDSIADMELWTTRIFEAIDNGFASSSNQRVPLDIDLLGNIVEASTLSVNPQYGDLHNNGHNILGYIFLEGFGVVGDNTTAMRDPVFYRWHQHIDDIFVRHKQRAYTGQELAFNDVAVDSFEIQPVNILLTFWQRSQVNLGFTHIQHAPYSYRIRVNDTRRGTVRIFFGPKTREQRRLMVELDKFTVTLNAGANTIVRRSDQSSVIPYERTNEAFQFCNCGWPNHMLLPKGSPDGIEYDFFVMVSDD
Anopheles_gambiae_tyr9             HRKDTGNVPVPSFLEMFFVDPASFSASEADPEQRLAYFREDIGVNLHHWHWHLVYPQEVVDKDRRGELFYYMHRQTVARYNVERFCNRLPAVKPLNLREPEAYFPKLLTYPGRHANMVLSHTILELESSLGRIKEAIQSGFAAADGTRVPLDIDILGNIMENSILSVNVPYGNYHSLGHVLIGFIYLEGHGVMGDFTTAMRDPTFYRFHGHVDDVFDMHKQKPYKAHELSFPGVSISDATVQARNRLLTFWQRTQVDLGFTHIQHAPFAYQIMVQEQKKGTVRIFLAPIYSQQRRYMLEMDKFVVKLHPGDNRIIRRSDQSSVIPYERTTESFRFCNCGWPDHMLLPKGHPDGQPFDLFIMISDD
Aspergillus_nidulans_tyr1          HSKDAQQRFPPPLKNHPFFSTKICTADTLHGHALLSYWRDDYDLNDSHYYWHMVYRGAVGDFDRHGEVFLYVHSQMVARYETESLCWSLPLVRPWQYDDFNGYAPISSGYPPFSTWYSIRNPRARLEEWRDNIYAAIRKGQFTTSKDPLVLTLNFVGGILDAQYPSLDEEYGNLHNYGLGKFAEMEKSPYGLTISNFGAPRDPCFWRWYKHLQYYGRLAATRYPQDITAHRAEVVLSNLVVRLDGHITTFLGPPAVNFMKAKLGHEPYEWNVQVKNPQTLTLRLFIAAEDMNDYHSWIEMDRATVQLTDESATKVRLDTDSSVARKMGNRYASAVFRHGWPQNLMLPVGKVEGMPFVAFCIATDD
Aspergillus_nidulans_tyr2          HSPHFQVLQVPQALVIAVFVDKNIPKRWRNPDALLKWWREDPMLNSHHWNWHTAYPSFAKLKDRQGELFVFMHRQMVARYDCERTALGLQPIDQFSYRESDAFDPLISMFVPRPADSKMRDSIVDLEIWRERLFEAIQKKSVQQDGTVTTTEIADLGSSLEATMGSPNKSYGNLNKQAHNLMSRVEQTSIGIMGDIIGAFRDPMFWRWHKHLDEFFHRFELTPYNIVDYAPANIRIANAVVRPENNLYTYMKTQIIAIKTNRLYYVPFNYEISVLKYKKVVVRVYIVASDYGDRRKWISLDQFFTALPEGQKTITRSSSESTILQQAATPSTETYCKCGLPRNLLLPRGTKEGMPFKIAVIVTDD
Bombyx_mori_tyr1                   HRPDTKGLSIPTFAESFFMDPKNYTASDTEPEQRVAYFREDIGINLHHWHWHLVYPFDIVNKDRRGELFYYMHQQIIARYNVERMCNNLSRVRRYNFRAAEGYFPKLDAWPPRFAGTTIRDDVSELETWRDRFLQAIENMSVLPNGRQLPLDIDVLGNLMESSIISRNRPYGDLHNMGHVFISYSHLEQFGVMGDSATAMRDPVFYRWHAYIDDIFHLYKYKPYGNDRLDFPNIRVSSVSIETPNTLNTLWEQSTVDLGFTHLQHDEYNYVIEVNSSVMGMFRIFIAPTVDEQRKLMIELDKFSQGVKPGNNTIRRKSIDSSVIPYERTAAEFDFCGCGWPHHMLVPKGTTQGYPMVLFVMVSND
Bombyx_mori_tyr2                   HSKLCKKHRYPDPPKRDTQSAASGIGVGTPNELWMNYWRCDADFNFHHNHWHAVYRNGRNLKTRQGELFGYMHAQMLARFNADRETWGLEPVKAYEFDEVEGFDAGWEWIYPRPDKQIWPRIINENKHFEGEIEDLFDYGKIEYNGKEQPLNSNFVGHILESSSGRWQQQFGSFHNMGHMAFVYTGNRNTTYMGTPLCAVRDPIFFRWHQHVDDLYQMWNDKVLTNLTKNSPDVIIDPCDVMSCGEIKTKLREADLAFEDYKLDHEPFSYHIRLKGELRLTLRLFICQERVNKRRRWIEMDKFVYVMPANATVVKRQDRESSVIKRSHAEIKAGNCDCGWPYTMLLPRGNKNGEKWLLGVYVSDD
Ciona_intestinalis_tyr1            HHSLARSNKVPEFTDAPDMSTHMVPPVGEPEEIWMDYWRHDADFVDHHRHWHRVYRARADHLDRQGELFVYMHRQMLARYNAEREAWGLEPVEPWEFTDVLGSDAGDEGIRPRPAGLKWSMDIRQFQVWTNNIRRAFRENIIPNQGAQSALQANWVGHIVEATSGTFYDNYGSLHNSGHGVFGQLQSGFSTYMATTAHAVRDHIFFRWHKFIDNLVEEYHQTQKTELGVDSPPVVIEENDIISSDLIETTLDLPQRQFEWGKLSHNAFNYHLRIRQELRLTFRIFICPAQANDRRRWIEMDKFRYILGAMETIITRQDVHSSVIRRFPQRTVSGFCECGWPYNLLLPRGKADGEKYLIAVLISDD
Ciona_intestinalis_tyr2            HSKLCKKHRYPDPPKRDTQSAASGIGVGTPNELWMNYWRCDADFNFHHNHWHAVYRGGRNLKTRQGELFGYMHAQMLARFNADRETWGLEPVKAYEFDEVEGFDAGWEWIYPRPDKQIWPRIINENKHFEGEIEDLFDYGMIEYNGREQPLNSNFVGHILESSSGRWQRQFGGFHNMGHMAFVYTGNRNTTYMGTPLCAVRDPIFFRWHQHVDDLYQMWNDKVVTNLTKNSPDVIVDPCDVMSCGEIKTKLREADLAFEDYKLDHEPFSYHIRLKGELRLTLRLFICQERVNQRRRWIEMDKFVYVMPANATVVKRHDRESSVIKRSHAEIKAGNCDCGWPYTMLLPRGNKNGEKWLLGVYVSDD
Ciona_intestinalis_tyr3            HSKLCKKHRYPDPPKRDTQSAASGIGVGTPNELWMNYWRCDADFNFHHNHWHAVYRGGRNLKTRQGELFGYMHAQMLARFNADRETWGLEPVKAYEFDEVEGFDAGWEWIYPRPDKQIWPRIINENKHFEGEIEDLFDYGMIEYNGREQPLNSNFVGHILESSSGRWQRQFGGFHNMGHMAFVYTGNRNTTYMGTPLCAVRDPIFFRWHQHVDDLYQMWNDKVVTNLTKNSPDVIVDPCDVMSCGEIKTKLREADLAFEDYKLDHEPFSYHIRLKGELRLTLRLFICQERVNQRRRWIEMDKFVYVMPANATVVKRHDRESSVIKRSHAEIKAGNCDCGWPYTMLLPRGNKNGEKWLLGVYVSDD
'Ciona_intestinalis tyr4'          HSKRAKSKQYPVPKPMDISNAAVTQRTGQPAETWMNYWRNDADLNYHHRHWHVVYVVGRPELFRQGELFGYMHAQMLARYNAERQSWRLPVVQAWQYNERVGYNTGFEGFSPRLPGSFPDREQTRFQRFERAIMRAINPPVVGETTRNVAMDANWAGHVIEASSSTWQAQLGSIHNNGHGVIGSMSRSGSSYMSATVTAMRDPIFYRWHKRIDNLWQEWSSRRVTDLQTDAPAVIIRPSDIIQSDDLQTYLGPPQKRYEDNKISHQPFTYHIRFQGELNLTVRIFICPASSNNRLSWIEMDKFVYRLGADATVISRPDRHSSVIKRERSTTATGFCECGWPYSMLLPRGTEQGEQWRLCVFLSDD
Daphnia_pulex_tyr                  QRQDSRSLRTPPIWEIFFFETRNFAATDRVVENKLSYFREDLGINSHHWHWHLIFPVEVNPPDRRGELFYYMHQQILARYDAERIANGLARVTSYDWDQPEAYFPKLTHWASRPSGLVLKDHIDDLQLWRTRILHAIHKGSVKGNGQVVHLDTNTLGELIEASQWSADKLYGDLHNFGHIAMCYIHSENMGVMGDSVTAMRDPIFYRWHKFIDSLFQQFKATPYSAQQLTLEGITVNSVEVHQKNLIITGWQESIVELDVTHLQHEDFSYRIQVTTSQDIVFRIFLAPIKREQRLLMIELDKFVARVTPGANLVKRKSDESSVIPFERTVKRTNFCGCGWPDHFLVPRGVPNGMPFTLFVMATSD
Dictyostelium_fasciculatum_tyr     HRPDCKGVSLPPIQEIFFVTVQQTTGNILDPEYNLAYYREDIGINAHHWHWHLVYPATGKVKDRKGELFYYMHQQMCARYDCERLSNGMPRMEPFNFHEPEGYSSHLSPYPSRPDGMTLQDSVQDLERWRDRISDAIHIGHVDENGSHVPLDIDILGAMVEASYESINQAYGSIHNWGHVISARVYHLNPGVMSDTATSLRDPIFYRWHRFIDNMFQDYKETHYNHSDLEFPGIEITKVLLNHTNNINTFKEFSVLDLSFSHLNHEDFHYKIQVEKTKPATVRIFMAPKYKNLRRLMIEMDKFHAEIHPGHNTIVRHSKDSSVISSARSEHANEYCSCGWPDHLLVPRGDEKGMPFHLFVMLTDD
Drosophila_melanogaster_tyr1       HRKDTHDLDLPTIIEVFYVDSKDYTASDLDEEHRLWYFREDIGVNLHHWHWHLVYPFDIVDKDRRGELFYYMHQQLVARYNFERFSNRLQRVKRLNLREPEGYFPKLDAWPGRVDASVLKDDVADLERWIDRIYEAIHQGFVDESGNRIPLDIDHLGNIIESSILSPNRQYGDMHNMGHVFISYAHLESFGVMGDVATAMRDPVFYRWHSYIDDIFQEHKNKPYTRSQLTFDGISITGITVQPPNTFQTFWQQSDVDLSFTHLQHSPFVTTIMIEAQRMAFVRVFLAPKNRDQRLFMIELDKFLVALRPGANRIRRRSKESTVIPFERTEAEFNFCGCGWPAHMLIPKGLPEGLPADLFIMVSND
Drosophila_melanogaster_tyr2       HRPDTQGLDLPSFSQTFFIDSQDYTASDLDPEHRLWYFREDLGINLHHWHWHLVYPFEIVAKDRRGELFYYMHQQVIARYNAERFSNNLARVLPFNLRDPEGYFPKMDAWPPRFESTRLSDEIGDLERWRDRIYEAIHQGFVDERGNRVPLDIDTLGNMIESSILSPNRVYGDLHNNGHTFISYAHLESFGVMGDVSTAMRDPVFYKWHSYIDRIFQEHKSRAYTENQLNYPGVSIAGIQVDRPNNLTTFWQQSDVDMSFTHLQHLPFTYTISLNAQRFGYVRIFMAPKNRDQRSMMIELDKFVTSLNPGPNTIRRRSTESSVIPFERTELEFNFCGCGWPNHMLVPKGLPEGLQCVLFIMVSND
Drosophila_melanogaster_tyr3       HRPDTREVPITNISQIFFVEPSNYTASDREDEQRLAYFREDIGVNSHHWHWHLVYPTTVVNKDRRGELFYYMHHQILARYNVERFCNNLKKVQPLNLRVEEGYFPKILTYPARVTNQKLRDEISDVERWRDRVLAAIDQGYVDSSGNRIPLDIDILGNMIEASVLSINYNYGNLHNEGHNIISFAHLEEFGVMGDVTTAMRDPIFYRWHGFIDTVFNKFKTRPYNAGELNFDGITVDYIEAKKANTLLTYWQKSSADLAFTHLQNAPFTYTFNVTARRTGTCRIFICPKVEEQRLLAIEMDKFTVDLVPGENTIRRQSTESSVIPFERSLARFKFCGCGWPQHLLLPKGNAQGMVFDLFVMISDD
Epiperipatus_sp_Hc                 QSPHTTNLLAPPIWQTMFFDQREPTGNNRDPEFKLSYFREDIAINSHHWHWHVIYPVGDKKINRKGELFYYMHEQMLARYDAERLCNGMRRVKSLDYDEIEGYYPRLHEYASRQANTRMMDTVIELERFRERIEHAISVGYILPDNTKTPLNIDILADLIEASNYSLNGAYGDLHNTGHVMLATAFNSSDGVMGFVQTALRDPLFYRWHKHIDNLLQNHKRTPYTDKELIADKIEIKEASITPKNKLYTFFDTKQLNLTITHLQHEEFTYNIKVNKDFTGTFRIFMAPKNNEQRILMIEMDKFQLKLSPGENNITRKSEDSNVLHKEMTPSSQHYCACGWPHHLLIPKGSAQGTAFHCFIMITDD
Euphrynichus_bacillifer_HcA        HRDDCKGVHIPPIQEIFFIPAEEKTGNILDPEYKLAYYREDIETNAHHWHWHIVYPATGHIKDRKGELFYYMHQQMCARYDCERLSNGMNRMIPFNFEEKEGYAPHLIQYGARPQGFSLRDDVQSMERWRERIIEAIQLGYVDEHGEHVNLDADIIGALIESSHDSKNSRYGSLHNWGHVMMARMYQENPGVMSDTSTSLRDPIFYRWHRFVDNIFKDYKSTPYEKEEYSFDGIEVLEVTVKTDNVLTTFLKEDILELTYDHLDHEPFHYSIDVQATKEATVRIFLGPKYEDKRRLMIELDKFHKTLAPGKNTISRNSVDSSVVSHVPTANNQEYCSCGWPGHMLIPRGTRKGMDFHLYVVLTDD
Euphrynichus_bacillifer_HcB        QSPHTTNLLAPPIWQTMFFDQREPTGNNRDPEFKLSYFREDIAINSHHWHWHVIYPVGDKKINRKGELFYYMHEQMLARYDAERLCNGMRRVKSLDYDEIEGYYPRLHEYASRQANTRMMDTVIELERFRERIEHAISVGYILPDNTKTPLNIDILADLIEASNYSLNGAYGDLHNTGHVMLATAFNSSDGVMGFVQTALRDPLFYRWHKHIDNLLQNHKRTPYTDKELIADKIEIKEASITPKNKLYTFFDTKQLNLTITHLQHEEFTYNIKVNKDFTGTFRIFMAPKNNEQRILMIEMDKFQLKLSPGENNITRKSEDSNVLHKEMTPSSQHYCACGWPHHLLIPKGSAQGTAFHCFIMITDD
Limulus_polyphemus_HcA             HRSDCDGIIVPPIQEIFFIPAEQETGNIFDPEYHLAYFREDIGANAHHWHWHIVYPGTHITKDRKGELFYYMHQQMCARYDCDRLSTGLRRLIPFNFHEEEGYNPHLTNYASRPAGLSMKDDVQDMIRWRERILDAIHIGFLDDHGNEIPLDTDLLADLMESSYESKNREYGSLHNWGHVIISQCFKENPGVMSDTSTSLRDPIFYRYHRFVDNIFQELKASPYKQSELDFTGIDVVNVTVNAPNLVHTFFAEDQLELRYHHLDHEPFTYNISVEAEKDSTVRIFLGPKYDEARRFYIELDKFHAKLSPGKNVVTRKSSESNVANKTPNASSDQFCSCGWPNYMLLPRGNHKGMEFELFVMLTDD
Limulus_polyphemus_HcB             HRDDCKGLAVPPIQEIFFIPAEEETGNILNPEQRLAYFREDIEVNAHHWHWHLVFPATGKVKDRKGELFYYMHQQMCARYDCDRMSVGLQRMIPFNFEETEGYSAHLTHYASRPEGLHIRDSLQEMERWRERILEGINLGHVDDHGKEVELDIDILGALIESSHESKNEEYGSLHNWGHVMLARVFHENPGVMSDTSTSLRDPIFYRYHRFIDNMFQEYKASHYTKTELTFPEISISHVTIKVPNIIHTFMATDELELSYHHLNHEAFSYEIQVETVKHGTFRVFLAPKYNEQRRLFIELDKFHHGIHKGHNTIVRNSTESSVVSKIHTEKNTEYCSCGWPQHMLVPRGNEKGMDFQLFVMVTDD
Mastigoproctus_giganteus_HcA       HRDDCRGVTVPPIQEVFFIPAEEQTGNILDSEYKVAYFREDIGINAHHWHWHIVYPTTHKVKDRKGELFYYMHQQMCARYDCERLSTELRRMIPFDFHQKEGYAPHLTNYASRPTGLSMSDDVQDMERWRERILDAIHGGFVDKEGNEVPLDLDMLGDLLESSYESVNREYGSLHNWGHVILAQVFKENPGVMSDTSTALRDPIFYRYHRFVDNIFQEYKISHYQKKDLDFPGVKVVNVTVNVPNVINTFLKESQLELSYHHLDHDPFTFSIGVEEVKNATVRVFLGPKYNEQRRFFIELDKFRATLEPGKTIITHKSSDSAVIDRTPTETNSEFCSCGWPQHMLIPRGNHRGMDFQLFVMLTDD
Mastigoproctus_giganteus_HcB       HRDDCKGVTVPPIQEIFFIPAEEETGNILDPEHTLAYYREDIGINAHHWHWHIAYPATGAVKDRKGELFFYMHQQMCARYDCERLSNGMNRMIPFNFEEHEGYAPHLTNYGSRPEGFSLRDDVQDMERWRERILESIHLGYVGHGEERIPLDTDILGAIIESSFESKNSTYGSLHNWGHVMMARMFQENPGVMSDTSTALRDPIFYRWHRFIDNIFQDYKATHYTKDDLSFDGIKVTDVVVKSDNVITTFMKEDELDLSYQHLDHEPFSISITVNAAKECIVRIFLAPQYEEGRRLFIELDKFKQTLAAGQSSFSRNAIDSNVLSKVPTDDYSEFCSCGWPENMLIPRGNHKGKPFVLFVLLTDD
Polysphondylium_pallidum_tyr2      HAPQFQSLQVPQALVIAVFCDQTIPKRWTNPDDLLKWWREDPMLNSHHWNWHTAYPSFAKLKDRQGELFVFMHRQMVARYDCERTALGIESLDPFTYKDSESFDPLLSTFVSRQSGSVMKDSLVDLEIWRQRLLEAIQKKTIASDGSMMTSEIADLGSSLEATMGSPNKAYGNLNKQAHNLMARVEQNNLGIMGDIIGAFRDPLFWRWHKHLDDFFHRFEIAPHKLEETAPPQFKVSKVSVKQENYLSTYMKSQIIDIKTYRLYHVPFNYEINVETFKKVVVRVYVVASDYGDRRKWVALDQFYTTLPEGQKTISRSSSESTILQRAVTTTLETYCKCGLPRNLLLPRGSKEGMKFKLCVVVTDD
Saccoglossus_kowaleksii_Hc         HSKEAQYLVAPSLKEHLFAMPAPTTADTLKAIETLSYWREDYDLNDHHYHWHLVYPWSHRTIDRQGELFLYMHSQMLARYNAERLSWSIGLVDPWSYDEVPSYTPPPGARPPLQGWLEEHSSKDTMIFWRNNINKGIIQGYFTKKENKFNLTMNWVGIIVEAEAHQIDSDYGTLHNLGHDKFGEINKNRWGVMGFTSVAVRDPVFWIWHRHIDDFRQSIVKKQHALKESAPPHVKLTGVQILPDGGIATYLTAPQLGLHNAKLNHEPYKWVVKVENLKPFTVRIFIAPKQMHEQRRYIEMDKFLCTLTTKSATFVRLDVESSVARKVPDEYQDPRCLCGWPQNMMIPNGTELGIDYVVFAILTND
Tribolium_castaneum_tyr1           HRPDTQNLDLPSFIHVFYVDSQDFTASDLDEEHRVAYWREDIGLNLHHWHWHLVYPFEIVDKNRRGEIFYYMHQQIIARFNIERLCNGLKRVVKLNWREPEAYFPKLDTWPARPVNQVPRDSLDDMDRWRDRIYDAIHSGVVGDNGQNIPLTIDVLGNIIESSILSPNRNYGDFHNMGHILIGYIFLEPFGVMADPAVDLRDPLFFRWHAYIDDMFQEFKATRYTVAQLNYPGVTVTNIEVQKPNVLSTFWQQSDLDLSFTHLQNQDFTYKITVNNNRMGTCRIFLAPQFRNQKDMFIELDRFAVSLKQGTNTITRHSTESSLIPFERTLSEFNFCGCGWPQHMLLPKGTEAGYPCHLFVMISND
Tribolium_castaneum_tyr2           HRQDTQDIDLPSFIESFYVDSKDYTASDLEEEHRLAYFREDLGINLHHWHWHLVYPFEVVAKNRRGELFYYMHQQIIARYNFERLCNKLKRATRFDFNEAEAYFPKLDAWPSRVANQKLRDDVEDLKRWSDRIYAAIHQGSVDERGRSITLTIDILGNMIESSILSPNRTYGDLHNMGHVFISYIHLESFGVMGDSATAMRDPIFYRWHSYIDDIFQEYKATRYTENQLNYPGITVSNIEVQSKNTFNTFWQQSDVDLSFTHLQHQPFTYKITVNGNRKGTCRIFLAPKTRDQKIMFIELDKFTVNLKQGQNTITRASSQSSVIPFERTLAQFNFCGCGWPQHMLIPKGTPEGMKSQLFVMISND
Tribolium_castaneum_tyr3           HRQDTQDIDLPSFIESFYVDSKDYTASDLEEEHRLAYFREDLGINLHHWHWHLVYPFEVVAKNRRGELFYYMHQQIIARYNFERLCNKLKRATRFDFNEAEAYFPKLDAWPSRVANQKLRDDVEDLKRWSDRIYAAIHQGSVDERGRSITLTIDILGNMIESSILSPNRTYGDLHNMGHVFISYIHLESFGVMGDSATAMRDPIFYRWHSYIDDIFQEYKATRYTENQLNYPGITVSNIEVPSKNTFNTFWQQSDVDLSFTHLQHQPFTYKITVNGNRKGTCRIFLAPKTRDQKIMFIELDKFTVNLKQGQNTITRASSQSSVIPFERTLAQFNFCGCGWPQHMLIPKGTPEGMKSQLFVMISND
;
END;

[ The following blocks are output data for analysis step 11030 ]
BEGIN TREES;
      TITLE Beta_subclass_BI;
      LINK TAXA = TaxaForAnalysisStep11030;
      TREE con_50_majrule = [&R] ((Dictyostelium_fasciculatum_tyr:0.14049,Polysphondylium_pallidum_tyr2:0.120643):0.3994105,(((Amphimedon_queenslandica_tyr:0.522012,(Aspergillus_nidulans_tyr2:0.001612,Aspergillus_nidulans_tyr1:0.001589):0.789252):0.415548,(Saccoglossus_kowaleksii_Hc:0.43284,(Ciona_intestinalis_tyr1:0.436223,(Ciona_intestinalis_tyr2:0.013545,('Ciona_intestinalis tyr4':0.001651,Ciona_intestinalis_tyr3:0.001707):0.011969):0.58256):0.16445):0.660148):0.357998,((Limulus_polyphemus_HcB:0.188878,(Limulus_polyphemus_HcA:0.157183,((Euphrynichus_bacillifer_HcB:0.138901,Mastigoproctus_giganteus_HcB:0.145684):0.072087,(Euphrynichus_bacillifer_HcA:0.118962,Mastigoproctus_giganteus_HcA:0.174237):0.094167):0.055314):0.114843):0.140145,(Epiperipatus_sp_Hc:0.544702,(Daphnia_pulex_tyr:0.470016,((Bombyx_mori_tyr2:0.360506,((Tribolium_castaneum_tyr1:0.221408,(Tribolium_castaneum_tyr2:0.001594,Tribolium_castaneum_tyr3:0.003849):0.103813):0.060946,(Bombyx_mori_tyr1:0.32318,(Anopheles_gambiae_tyr1:0.15515,(Drosophila_melanogaster_tyr2:0.095958,Drosophila_melanogaster_tyr1:0.274962):0.07576):0.075985):0.040802):0.050598):0.080019,((Anopheles_gambiae_tyr2:0.188703,(Drosophila_melanogaster_tyr3:0.270231,(Anopheles_gambiae_tyr6:0.085989,Anopheles_gambiae_tyr3:0.037257):0.176315):0.048397):0.041094,((Anopheles_gambiae_tyr8:0.240928,Anopheles_gambiae_tyr7:0.184008):0.137679,(Anopheles_gambiae_tyr9:0.305492,(Anopheles_gambiae_tyr5:0.192648,Anopheles_gambiae_tyr4:0.10231):0.123681):0.040588):0.056407):0.128727):0.126049):0.149538):0.116109):0.321754):0.3994105);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr61727]


END;