#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 10:52 GMT

TreeBASE (cc) 1994-2008

Study reference:
Aguilera F., Mcdougall C., & Degnan B.M. 2013. Origin, evolution and classification
of type-3 copper proteins: Lineage-specific gene expansions and losses across
the Metazoa. BMC Evolutionary Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S13985]

[ The following blocks are input data for analysis step 11032 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep11032;
        DIMENSIONS NTAX=35;
        TAXLABELS
            Amphimedon_queenslandica_tyr
            Anopheles_gambiae_tyr1
            Anopheles_gambiae_tyr2
            Anopheles_gambiae_tyr3
            Anopheles_gambiae_tyr4
            Anopheles_gambiae_tyr5
            Anopheles_gambiae_tyr6
            Anopheles_gambiae_tyr7
            Anopheles_gambiae_tyr8
            Anopheles_gambiae_tyr9
            Aspergillus_nidulans_tyr1
            Aspergillus_nidulans_tyr2
            Bombyx_mori_tyr1
            Bombyx_mori_tyr2
            Ciona_intestinalis_tyr1
            Ciona_intestinalis_tyr2
            Ciona_intestinalis_tyr3
            Ciona_intestinalis_tyr4
            Daphnia_pulex_tyr
            Dictyostelium_fasciculatum_tyr
            Drosophila_melanogaster_tyr1
            Drosophila_melanogaster_tyr2
            Drosophila_melanogaster_tyr3
            Epiperipatus_sp_Hc
            Euphrynichus_bacillifer_HcA
            Euphrynichus_bacillifer_HcB
            Limulus_polyphemus_HcA
            Limulus_polyphemus_HcB
            Mastigoproctus_giganteus_HcA
            Mastigoproctus_giganteus_HcB
            Polysphondylium_pallidum_tyr2
            Saccoglossus_kowaleksii_Hc
            Tribolium_castaneum_tyr1
            Tribolium_castaneum_tyr2
            Tribolium_castaneum_tyr3
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16280]

	TITLE Beta_alignment_NJ;
	LINK TAXA = TaxaForAnalysisStep11032;
	DIMENSIONS NCHAR=365;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360     ]
[                                           .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .     ]
Amphimedon_queenslandica_tyr       HSKLCKKHRYPDPPKRDTQSAASGIGVGTPNELWMNYWRCDADFNFHHNHWHAVYRGGRNLKTRQGELFGYMHAQMLARFNADRETWGLEPVKAYEFDEVEGFDAGWEWIYPRPDKQIWPRIINENKHFEGEIEDLFDYGMIEYNGREQPLNSNFVGHILESSSGRWQRQFGGFHNMGHMAFVYTGNRNTTYMGTPLCAVRDPIFFRWHQHVDDLYQMWNDKVVTNLTKNSPDVIVDPCDVMSCGEIKTKLREADLAFEDYKLDHEPFSYHIRLKGELRLTLRLFICQERVNQRRRWIEMDKFVYVMPANATVVKRHDRESSVIKRSHAEIKAGNCDCGWPYTMLLPRGNKNGEKWLLGVYVSDD
Anopheles_gambiae_tyr1             HRRDTRKVRVKNFAEVFFLDSQDYTATDLEEEHRLAYWREDIGINLHHYHWHLVYPFTIVAKDRRGELFFYMHQQVIARFNCERLCNSLKRVKKFNWREPEAYFPKLDGWPPRQSGMQWQDTIDEMERWRRNVEEAIATGTVLPNGQTRPLDIDTLGNMLESSALSPNREYGSIHNNGHSFTAYMYLEQFGVIADEATTMRDPFFYRWHAYIDDVFQKHKESPYTRSELENPGVQVRSVSVEQPNTLNTFWMLSDVNLSFTHLNYRHFSYRINVNSSRRTTVRIFITPKFSDQRKMCIEMDRFVTVLNAGENNIVRQSTESSIIPFEQTLATFNYCGCGWPQHMLVPKGTEAGMPFQLFVMLSND
Anopheles_gambiae_tyr2             HRPDTKDLELPAFAQTFFIDSKKYTASDLDVEHRLWYFREDLGVNLHHWHWHLVYPIEIVDKDRRGELFYYMHQQIIARYNAERLSNHMARVQPFNLDEPEGYFPKMDAYPPRFDNTRLSDGIDDMKRWRERIYEAIHQGYVDTNNEKIVLDIDILGNIIEASDLTPNSTYGDFHNMGHILIAYSHLEYAGVMGDASTAMRDPIFYKWHAFIDNMFQEHKRLPYEKQELSFPDVRVESIQVEQVNRLTTFWQESDVDMSFTHLQHHEFSYTIKVEATRYGYVRIFLAPKLEQQRLMMVELDKFVVTMPPGSHTITRNSTESSVIPFERTELQNFLCGCGWPQHMLIPKGRPEGLRFELFVMVSND
Anopheles_gambiae_tyr3             HRPDTREVPITNISQIFFVEPSNYTASDREDEQRLAYFREDIGVNSHHWHWHLVYPTTVVNKDRRGELFYYMHHQILARYNVERFCNNLKKVQPLNLRVEEGYFPKILTYPARVTNQKLRDEISDVERWRDRVLAAIDQGYVDSSGNRIPLDIDILGNMIEASVLSINYNYGNLHNEGHNIISFAHLEEFGVMGDVTTAMRDPIFYRWHGFIDTVFNKFKTRPYNAGELNFDGITVDYIEAKKANTLLTYWQKSSADLAFTHLQNAPFTYTFNVTARRTGTCRIFICPKVEEQRLLAIEMDKFTVDLVPGENTIRRQSTESSVIPFERSLARFKFCGCGWPQHLLLPKGNAQGMVFDLFVMISDD
Anopheles_gambiae_tyr4             HRQDTQDIDLPSFIESFYVDSKDYTASDLEEEHRLAYFREDLGINLHHWHWHLVYPFEVVAKNRRGELFYYMHQQIIARYNFERLCNKLKRATRFDFNEAEAYFPKLDAWPSRVANQKLRDDVEDLKRWSDRIYAAIHQGSVDERGRSITLTIDILGNMIESSILSPNRTYGDLHNMGHVFISYIHLESFGVMGDSATAMRDPIFYRWHSYIDDIFQEYKATRYTENQLNYPGITVSNIEVPSKNTFNTFWQQSDVDLSFTHLQHQPFTYKITVNGNRKGTCRIFLAPKTRDQKIMFIELDKFTVNLKQGQNTITRASSQSSVIPFERTLAQFNFCGCGWPQHMLIPKGTPEGMKSQLFVMISND
Anopheles_gambiae_tyr5             HRQDTQDIDLPSFIESFYVDSKDYTASDLEEEHRLAYFREDLGINLHHWHWHLVYPFEVVAKNRRGELFYYMHQQIIARYNFERLCNKLKRATRFDFNEAEAYFPKLDAWPSRVANQKLRDDVEDLKRWSDRIYAAIHQGSVDERGRSITLTIDILGNMIESSILSPNRTYGDLHNMGHVFISYIHLESFGVMGDSATAMRDPIFYRWHSYIDDIFQEYKATRYTENQLNYPGITVSNIEVQSKNTFNTFWQQSDVDLSFTHLQHQPFTYKITVNGNRKGTCRIFLAPKTRDQKIMFIELDKFTVNLKQGQNTITRASSQSSVIPFERTLAQFNFCGCGWPQHMLIPKGTPEGMKSQLFVMISND
Anopheles_gambiae_tyr6             HRPDTKGLSIPTFAESFFMDPKNYTASDTEPEQRVAYFREDIGINLHHWHWHLVYPFDIVNKDRRGELFYYMHQQIIARYNVERMCNNLSRVRRYNFRAAEGYFPKLDAWPPRFAGTTIRDDVSELETWRDRFLQAIENMSVLPNGRQLPLDIDVLGNLMESSIISRNRPYGDLHNMGHVFISYSHLEQFGVMGDSATAMRDPVFYRWHAYIDDIFHLYKYKPYGNDRLDFPNIRVSSVSIETPNTLNTLWEQSTVDLGFTHLQHDEYNYVIEVNSSVMGMFRIFIAPTVDEQRKLMIELDKFSQGVKPGNNTIRRKSIDSSVIPYERTAAEFDFCGCGWPHHMLVPKGTTQGYPMVLFVMVSND
Anopheles_gambiae_tyr7             HRKDTHDLDLPTIIEVFYVDSKDYTASDLDEEHRLWYFREDIGVNLHHWHWHLVYPFDIVDKDRRGELFYYMHQQLVARYNFERFSNRLQRVKRLNLREPEGYFPKLDAWPGRVDASVLKDDVADLERWIDRIYEAIHQGFVDESGNRIPLDIDHLGNIIESSILSPNRQYGDMHNMGHVFISYAHLESFGVMGDVATAMRDPVFYRWHSYIDDIFQEHKNKPYTRSQLTFDGISITGITVQPPNTFQTFWQQSDVDLSFTHLQHSPFVTTIMIEAQRMAFVRVFLAPKNRDQRLFMIELDKFLVALRPGANRIRRRSKESTVIPFERTEAEFNFCGCGWPAHMLIPKGLPEGLPADLFIMVSND
Anopheles_gambiae_tyr8             HRPDTQGLDLPSFSQTFFIDSQDYTASDLDPEHRLWYFREDLGINLHHWHWHLVYPFEIVAKDRRGELFYYMHQQVIARYNAERFSNNLARVLPFNLRDPEGYFPKMDAWPPRFESTRLSDEIGDLERWRDRIYEAIHQGFVDERGNRVPLDIDTLGNMIESSILSPNRVYGDLHNNGHTFISYAHLESFGVMGDVSTAMRDPVFYKWHSYIDRIFQEHKSRAYTENQLNYPGVSIAGIQVDRPNNLTTFWQQSDVDMSFTHLQHLPFTYTISLNAQRFGYVRIFMAPKNRDQRSMMIELDKFVTSLNPGPNTIRRRSTESSVIPFERTELEFNFCGCGWPNHMLVPKGLPEGLQCVLFIMVSND
Anopheles_gambiae_tyr9             HRPDTQNLDLPSFIHVFYVDSQDFTASDLDEEHRVAYWREDIGLNLHHWHWHLVYPFEIVDKNRRGEIFYYMHQQIIARFNIERLCNGLKRVVKLNWREPEAYFPKLDTWPARPVNQVPRDSLDDMDRWRDRIYDAIHSGVVGDNGQNIPLTIDVLGNIIESSILSPNRNYGDFHNMGHILIGYIFLEPFGVMADPAVDLRDPLFFRWHAYIDDMFQEFKATRYTVAQLNYPGVTVTNIEVQKPNVLSTFWQQSDLDLSFTHLQNQDFTYKITVNNNRMGTCRIFLAPQFRNQKDMFIELDRFAVSLKQGTNTITRHSTESSLIPFERTLSEFNFCGCGWPQHMLLPKGTEAGYPCHLFVMISND
Aspergillus_nidulans_tyr1          HSKLCKKHRYPDPPKRDTQSAASGIGVGTPNELWMNYWRCDADFNFHHNHWHAVYRNGRNLKTRQGELFGYMHAQMLARFNADRETWGLEPVKAYEFDEVEGFDAGWEWIYPRPDKQIWPRIINENKHFEGEIEDLFDYGKIEYNGKEQPLNSNFVGHILESSSGRWQQQFGSFHNMGHMAFVYTGNRNTTYMGTPLCAVRDPIFFRWHQHVDDLYQMWNDKVLTNLTKNSPDVIIDPCDVMSCGEIKTKLREADLAFEDYKLDHEPFSYHIRLKGELRLTLRLFICQERVNKRRRWIEMDKFVYVMPANATVVKRQDRESSVIKRSHAEIKAGNCDCGWPYTMLLPRGNKNGEKWLLGVYVSDD
Aspergillus_nidulans_tyr2          HSKLCKKHRYPDPPKRDTQSAASGIGVGTPNELWMNYWRCDADFNFHHNHWHAVYRGGRNLKTRQGELFGYMHAQMLARFNADRETWGLEPVKAYEFDEVEGFDAGWEWIYPRPDKQIWPRIINENKHFEGEIEDLFDYGMIEYNGREQPLNSNFVGHILESSSGRWQRQFGGFHNMGHMAFVYTGNRNTTYMGTPLCAVRDPIFFRWHQHVDDLYQMWNDKVVTNLTKNSPDVIVDPCDVMSCGEIKTKLREADLAFEDYKLDHEPFSYHIRLKGELRLTLRLFICQERVNQRRRWIEMDKFVYVMPANATVVKRHDRESSVIKRSHAEIKAGNCDCGWPYTMLLPRGNKNGEKWLLGVYVSDD
Bombyx_mori_tyr1                   HRSDTSDVPVPSFLHLFFIDPANYTASDRVTEQRLAYFREDIGVNLHHWHWHLVYPAEVVRKDRRGELFYYMHQQMIARYQVERYSQGLGRVTPLNLRTPEPYYPKILTYPARYANMTLEDIISEVERQLQRIIAAIDEGVVAPSGQRTQLDIDILGNIVESSTISVNRQYGDTHNSGHVLLSLVFLESFGVMGDVTTAMRDPVFYRWHTFVDSIFQRHKQRPYGPAELRNPGVNLLSLETEVKNTLLTFWQRSQFDLGFTHLQHAAFNYRLQVATAKPATLRIFLAPKREEQRRLAIEMDTFRVNLTPGINNIIRRSANSSVIPYERTDANFRFCGCGWPSHMLVPKGDQFGVEYDLFAMLSDD
Bombyx_mori_tyr2                   HRDDTRDVEIPSFLELFFVDPANYTASDRVDEQRVAYWREDIGLSLHHWHWHLVYPSTVVRKDRRGELFYHMHQQTIARYNIERFANGLARTLSFQLRESEAYFPKIVAFSCRYPNQVMKDRLADMDVSIKRIFEAIDNGYAATNGDRVPLDIDLIGDLLEASTNSINFNYGDYHQNGHVMLGYIYLEGVGVMGDLTTTMRDPLFYRWHQHIDDIFVRHKQRAYTSSELSFNDITVDSFDVQPKNVLLTFWQRSQFDLGFTHIQHAPFSYRIQATSMRRGTVRLFLGPKVRDQRRHMVELDKFTVNLRPGQNSIVRRSDESNLIPYERTMEVFQFCNCGWPSHMLLPKGSASGLEYDFFVMISND
Ciona_intestinalis_tyr1            HSKDAQQRFPPPLKNHPFFSTKICTADTLHGHALLSYWRDDYDLNDSHYYWHMVYRGAVGDFDRHGEVFLYVHSQMVARYETESLCWSLPLVRPWQYDDFNGYAPISSGYPPFSTWYSIRNPRARLEEWRDNIYAAIRKGQFTTSKDPLVLTLNFVGGILDAQYPSLDEEYGNLHNYGLGKFAEMEKSPYGLTISNFGAPRDPCFWRWYKHLQYYGRLAATRYPQDITAHRAEVVLSNLVVRLDGHITTFLGPPAVNFMKAKLGHEPYEWNVQVKNPQTLTLRLFIAAEDMNDYHSWIEMDRATVQLTDESATKVRLDTDSSVARKMGNRYASAVFRHGWPQNLMLPVGKVEGMPFVAFCIATDD
Ciona_intestinalis_tyr2            HSKEAQYLVAPSLKEHLFAMPAPTTADTLKAIETLSYWREDYDLNDHHYHWHLVYPWSHRTIDRQGELFLYMHSQMLARYNAERLSWSIGLVDPWSYDEVPSYTPPPGARPPLQGWLEEHSSKDTMIFWRNNINKGIIQGYFTKKENKFNLTMNWVGIIVEAEAHQIDSDYGTLHNLGHDKFGEINKNRWGVMGFTSVAVRDPVFWIWHRHIDDFRQSIVKKQHALKESAPPHVKLTGVQILPDGGIATYLTAPQLGLHNAKLNHEPYKWVVKVENLKPFTVRIFIAPKQMHEQRRYIEMDKFLCTLTTKSATFVRLDVESSVARKVPDEYQDPRCLCGWPQNMMIPNGTELGIDYVVFAILTND
Ciona_intestinalis_tyr3            HSKRAKSKQYPVPKPMDISNAAVTQRTGQPAETWMNYWRNDADLNYHHRHWHVVYVVGRPELFRQGELFGYMHAQMLARYNAERQSWRLPVVQAWQYNERVGYNTGFEGFSPRLPGSFPDREQTRFQRFERAIMRAINPPVVGETTRNVAMDANWAGHVIEASSSTWQAQLGSIHNNGHGVIGSMSRSGSSYMSATVTAMRDPIFYRWHKRIDNLWQEWSSRRVTDLQTDAPAVIIRPSDIIQSDDLQTYLGPPQKRYEDNKISHQPFTYHIRFQGELNLTVRIFICPASSNNRLSWIEMDKFVYRLGADATVISRPDRHSSVIKRERSTTATGFCECGWPYSMLLPRGTEQGEQWRLCVFLSDD
Ciona_intestinalis_tyr4            HHSLARSNKVPEFTDAPDMSTHMVPPVGEPEEIWMDYWRHDADFVDHHRHWHRVYRARADHLDRQGELFVYMHRQMLARYNAEREAWGLEPVEPWEFTDVLGSDAGDEGIRPRPAGLKWSMDIRQFQVWTNNIRRAFRENIIPNQGAQSALQANWVGHIVEATSGTFYDNYGSLHNSGHGVFGQLQSGFSTYMATTAHAVRDHIFFRWHKFIDNLVEEYHQTQKTELGVDSPPVVIEENDIISSDLIETTLDLPQRQFEWGKLSHNAFNYHLRIRQELRLTFRIFICPAQANDRRRWIEMDKFRYILGAMETIITRQDVHSSVIRRFPQRTVSGFCECGWPYNLLLPRGKADGEKYLIAVLISDD
Daphnia_pulex_tyr                  QRQDSRSLRTPPIWEIFFFETRNFAATDRVVENKLSYFREDLGINSHHWHWHLIFPVEVNPPDRRGELFYYMHQQILARYDAERIANGLARVTSYDWDQPEAYFPKLTHWASRPSGLVLKDHIDDLQLWRTRILHAIHKGSVKGNGQVVHLDTNTLGELIEASQWSADKLYGDLHNFGHIAMCYIHSENMGVMGDSVTAMRDPIFYRWHKFIDSLFQQFKATPYSAQQLTLEGITVNSVEVHQKNLIITGWQESIVELDVTHLQHEDFSYRIQVTTSQDIVFRIFLAPIKREQRLLMIELDKFVARVTPGANLVKRKSDESSVIPFERTVKRTNFCGCGWPDHFLVPRGVPNGMPFTLFVMATSD
Dictyostelium_fasciculatum_tyr     HAPQFQSLQVPQALVIAVFCDQTIPKRWTNPDDLLKWWREDPMLNSHHWNWHTAYPSFAKLKDRQGELFVFMHRQMVARYDCERTALGIESLDPFTYKDSESFDPLLSTFVSRQSGSVMKDSLVDLEIWRQRLLEAIQKKTIASDGSMMTSEIADLGSSLEATMGSPNKAYGNLNKQAHNLMARVEQNNLGIMGDIIGAFRDPLFWRWHKHLDDFFHRFEIAPHKLEETAPPQFKVSKVSVKQENYLSTYMKSQIIDIKTYRLYHVPFNYEINVETFKKVVVRVYVVASDYGDRRKWVALDQFYTTLPEGQKTISRSSSESTILQRAVTTTLETYCKCGLPRNLLLPRGSKEGMKFKLCVVVTDD
Drosophila_melanogaster_tyr1       HRKDTGNVPVPSFLEMFFVDPASFSASEADPEQRLAYFREDIGVNLHHWHWHLVYPQEVVDKDRRGELFYYMHRQTVARYNVERFCNRLPAVKPLNLREPEAYFPKLLTYPGRHANMVLSHTILELESSLGRIKEAIQSGFAAADGTRVPLDIDILGNIMENSILSVNVPYGNYHSLGHVLIGFIYLEGHGVMGDFTTAMRDPTFYRFHGHVDDVFDMHKQKPYKAHELSFPGVSISDATVQARNRLLTFWQRTQVDLGFTHIQHAPFAYQIMVQEQKKGTVRIFLAPIYSQQRRYMLEMDKFVVKLHPGDNRIIRRSDQSSVIPYERTTESFRFCNCGWPDHMLLPKGHPDGQPFDLFIMISDD
Drosophila_melanogaster_tyr2       HREDTKDVNIPSIVSLFFVDPANYTASDREDEQRMAYFREDIGVNMHHWHWHLVYPGDVVRKDRRGELFFYMHSQLIARYNADRFCAKLKKVRNLNYREPEGYYPKMISYPARAANTTLQDSVNDLERWRDRIHEAIDQGFVDKSGNRIMLDIDILGDVVEASSLTPNAQYGSLHNMGHNVIAYVYLEDYGVMGDVTTAMRDPIFYRWHGMIDGIFRRHKELPYTAEQLGNPGVTVNSVGVQPANVLLTYWQRSQVDLAFTHLQHAPFSFRVEVNAVRKGTLRIWLAPKSREQRRYFIEMDTSTVTLNPGMNTIVRRSDQSSVIPYERTLAQFRFCGCGWPQHMLVPKGSPEGVQFDLFAMVTDD
Drosophila_melanogaster_tyr3       HRPDTKSVSVPSLLHLFFIDPANYTATDAEPEQRMAFFREDIGVNLHHWHWHLVYPASVVRKDRRGELFYYMHQQLLARYQIDRYAQGLGRIEPLNLREPEAYYPKLLTFCPRYPGMTISDRIADIESWLPRVLEAIDAGFASDDGVRVPLDIDVLGNILERSAISINRNYGDVHNMGHVLLAFIYLESSGVMGGVATAMRDPIFYRWHKFIDNIFLRNKARPYTMAELSNSNVTLEALETQAVNSFVTFWQRSQVDLRFTHLQCAPFVYRLRINSNRQDTVRIFLLPRQEDRRLLAIELDSFRVNLRPGMNNIVRQSSNSSVIPFERTNAQSRFCGCGWPAHMLLPKGNANGVEFDLFAMVSRD
Epiperipatus_sp_Hc                 HRPDCKGVSLPPIQEIFFVTVQQTTGNILDPEYNLAYYREDIGINAHHWHWHLVYPATGKVKDRKGELFYYMHQQMCARYDCERLSNGMPRMEPFNFHEPEGYSSHLSPYPSRPDGMTLQDSVQDLERWRDRISDAIHIGHVDENGSHVPLDIDILGAMVEASYESINQAYGSIHNWGHVISARVYHLNPGVMSDTATSLRDPIFYRWHRFIDNMFQDYKETHYNHSDLEFPGIEITKVLLNHTNNINTFKEFSVLDLSFSHLNHEDFHYKIQVEKTKPATVRIFMAPKYKNLRRLMIEMDKFHAEIHPGHNTIVRHSKDSSVISSARSEHANEYCSCGWPDHLLVPRGDEKGMPFHLFVMLTDD
Euphrynichus_bacillifer_HcA        HRDDCKGVTVPPIQEIFFIPAEEETGNILDPEHTLAYYREDIGINAHHWHWHIAYPATGAVKDRKGELFFYMHQQMCARYDCERLSNGMNRMIPFNFEEHEGYAPHLTNYGSRPEGFSLRDDVQDMERWRERILESIHLGYVGHGEERIPLDTDILGAIIESSFESKNSTYGSLHNWGHVMMARMFQENPGVMSDTSTALRDPIFYRWHRFIDNIFQDYKATHYTKDDLSFDGIKVTDVVVKSDNVITTFMKEDELDLSYQHLDHEPFSISITVNAAKECIVRIFLAPQYEEGRRLFIELDKFKQTLAAGQSSFSRNAIDSNVLSKVPTDDYSEFCSCGWPENMLIPRGNHKGKPFVLFVLLTDD
Euphrynichus_bacillifer_HcB        HRSDCDGIIVPPIQEIFFIPAEQETGNIFDPEYHLAYFREDIGANAHHWHWHIVYPGTHITKDRKGELFYYMHQQMCARYDCDRLSTGLRRLIPFNFHEEEGYNPHLTNYASRPAGLSMKDDVQDMIRWRERILDAIHIGFLDDHGNEIPLDTDLLADLMESSYESKNREYGSLHNWGHVIISQCFKENPGVMSDTSTSLRDPIFYRYHRFVDNIFQELKASPYKQSELDFTGIDVVNVTVNAPNLVHTFFAEDQLELRYHHLDHEPFTYNISVEAEKDSTVRIFLGPKYDEARRFYIELDKFHAKLSPGKNVVTRKSSESNVANKTPNASSDQFCSCGWPNYMLLPRGNHKGMEFELFVMLTDD
Limulus_polyphemus_HcA             HRDDCRGVTVPPIQEVFFIPAEEQTGNILDSEYKVAYFREDIGINAHHWHWHIVYPTTHKVKDRKGELFYYMHQQMCARYDCERLSTELRRMIPFDFHQKEGYAPHLTNYASRPTGLSMSDDVQDMERWRERILDAIHGGFVDKEGNEVPLDLDMLGDLLESSYESVNREYGSLHNWGHVILAQVFKENPGVMSDTSTALRDPIFYRYHRFVDNIFQEYKISHYQKKDLDFPGVKVVNVTVNVPNVINTFLKESQLELSYHHLDHDPFTFSIGVEEVKNATVRVFLGPKYNEQRRFFIELDKFRATLEPGKTIITHKSSDSAVIDRTPTETNSEFCSCGWPQHMLIPRGNHRGMDFQLFVMLTDD
Limulus_polyphemus_HcB             QSPHTTNLLAPPIWQTMFFDQREPTGNNRDPEFKLSYFREDIAINSHHWHWHVIYPVGDKKINRKGELFYYMHEQMLARYDAERLCNGMRRVKSLDYDEIEGYYPRLHEYASRQANTRMMDTVIELERFRERIEHAISVGYILPDNTKTPLNIDILADLIEASNYSLNGAYGDLHNTGHVMLATAFNSSDGVMGFVQTALRDPLFYRWHKHIDNLLQNHKRTPYTDKELIADKIEIKEASITPKNKLYTFFDTKQLNLTITHLQHEEFTYNIKVNKDFTGTFRIFMAPKNNEQRILMIEMDKFQLKLSPGENNITRKSEDSNVLHKEMTPSSQHYCACGWPHHLLIPKGSAQGTAFHCFIMITDD
Mastigoproctus_giganteus_HcA       HRDDCKGVHIPPIQEIFFIPAEEKTGNILDPEYKLAYYREDIETNAHHWHWHIVYPATGHIKDRKGELFYYMHQQMCARYDCERLSNGMNRMIPFNFEEKEGYAPHLIQYGARPQGFSLRDDVQSMERWRERIIEAIQLGYVDEHGEHVNLDADIIGALIESSHDSKNSRYGSLHNWGHVMMARMYQENPGVMSDTSTSLRDPIFYRWHRFVDNIFKDYKSTPYEKEEYSFDGIEVLEVTVKTDNVLTTFLKEDILELTYDHLDHEPFHYSIDVQATKEATVRIFLGPKYEDKRRLMIELDKFHKTLAPGKNTISRNSVDSSVVSHVPTANNQEYCSCGWPGHMLIPRGTRKGMDFHLYVVLTDD
Mastigoproctus_giganteus_HcB       HRDDCKGLAVPPIQEIFFIPAEEETGNILNPEQRLAYFREDIEVNAHHWHWHLVFPATGKVKDRKGELFYYMHQQMCARYDCDRMSVGLQRMIPFNFEETEGYSAHLTHYASRPEGLHIRDSLQEMERWRERILEGINLGHVDDHGKEVELDIDILGALIESSHESKNEEYGSLHNWGHVMLARVFHENPGVMSDTSTSLRDPIFYRYHRFIDNMFQEYKASHYTKTELTFPEISISHVTIKVPNIIHTFMATDELELSYHHLNHEAFSYEIQVETVKHGTFRVFLAPKYNEQRRLFIELDKFHHGIHKGHNTIVRNSTESSVVSKIHTEKNTEYCSCGWPQHMLVPRGNEKGMDFQLFVMVTDD
Polysphondylium_pallidum_tyr2      HSPHFQVLQVPQALVIAVFVDKNIPKRWRNPDALLKWWREDPMLNSHHWNWHTAYPSFAKLKDRQGELFVFMHRQMVARYDCERTALGLQPIDQFSYRESDAFDPLISMFVPRPADSKMRDSIVDLEIWRERLFEAIQKKSVQQDGTVTTTEIADLGSSLEATMGSPNKSYGNLNKQAHNLMSRVEQTSIGIMGDIIGAFRDPMFWRWHKHLDEFFHRFELTPYNIVDYAPANIRIANAVVRPENNLYTYMKTQIIAIKTNRLYYVPFNYEISVLKYKKVVVRVYIVASDYGDRRKWISLDQFFTALPEGQKTITRSSSESTILQQAATPSTETYCKCGLPRNLLLPRGTKEGMPFKIAVIVTDD
Saccoglossus_kowaleksii_Hc         HSKDAQQRFPPPLKNHPFFSTKICTADTLHGHALLSYWRDDYDLNDSHYYWHMVYRGAVGDFDRHGEVFLYVHSQMVARYETESLCWSLPLVRPWQYDDFNGYAPISSGYPPFSTWYSIRNPRARLEEWRDNIYAAIRKGQFTTSKDPLVLTLNFVGGILDAQYPSLDEEYGNLHNYGLGKFAEMEKSPYGLTISNFGAPRDPCFWRWYKHLQYYGRLAATRYPQDITAHRAEVVLSNLVVRLDGHITTFLGPPAVNFMKAKLGHEPYEWNVQVKNPQTLTLRLFIAAEDMNDYHSWIEMDRATVQLTDESATKVRLDTDSSVARKMGNRYASAVFRHGWPQNLMLPVGKVEGMPFVAFCIATDD
Tribolium_castaneum_tyr1           HRPDTKDLNIPSFLELFFVDPSNYTASDREDEQRLAYFREDIGVNLHHWHWHLVYPGEVVNKDRRGELFYYMHQQLIARYNVERFCNRLARVRPLNLREPEGYFPKIIAFPPRPQNTVLRDTVSDLERSESRIAESIDGGYVGPGGNRIPLDIDVLGNIMEPSALSVNSQYGNYHGNLHNIIAYSFLEGYGVVGEFQTAMRDPSFYRLHAQVDNMFHRYKRTPYNANQLNYNGIQIQSLGVQPANVLLTYWQRSQVDLAFTHLQHAPFTFRLTVNATRRGTCRIFIGPKVDEQRLLMIELDKFTVNLNPGTNNIVRRSEQSSVIPYERTTEQFRFCNCGWPHHLLIPKGTPEGMQFDLFAMISND
Tribolium_castaneum_tyr2           HRTDTRDVEIPSFLELFYVDPANFTASDRVDEQRLAYWREDIGVNLHHWHWHLVYPARIVRKDRRGELFYYMHQQTMARYNIERFANGMPRVVAFNFREAEAYFPKITSYPARHPNETLSDSIADMELWTTRIFEAIDNGFASSSNQRVPLDIDLLGNIVEASTLSVNPQYGDLHNNGHNILGYIFLEGFGVVGDNTTAMRDPVFYRWHQHIDDIFVRHKQRAYTGQELAFNDVAVDSFEIQPVNILLTFWQRSQVNLGFTHIQHAPYSYRIRVNDTRRGTVRIFFGPKTREQRRLMVELDKFTVTLNAGANTIVRRSDQSSVIPYERTNEAFQFCNCGWPNHMLLPKGSPDGIEYDFFVMVSDD
Tribolium_castaneum_tyr3           HRPDTKNLNIPSFFDLFFVDPTNYTASDREDEQRLAYFREDIGVNLHHWHWHLVYPGEVVNKDRRGELFYYMHQQLIARYNVDRFCNRLSRVRPLSLREPEGYFPKIVGFPARPQNTILRDSITDIELWGSRIAESIDGGYVAPGGNRIPLDIDVLGNIIEPSALSVNSQYGNYHGHMHNLISFSFLEGYGVVGEFQTAMRDPAFYRLHAQVDNMFHRYKRTPYNANQIGYAGVQIQSFGVQPANVLLTYWQRSQIDLGFTHLQHAPFTYRFAVNAARRGTCRIFIAPKTDEQRLLMIELDKFRVNLTPGVNNIVRRSEQSSVIPYERTTEQFRFCNCGWPHHLLLPKGTAEGMKFDLFLMISND
;
END;

[ The following blocks are output data for analysis step 11032 ]
BEGIN TREES;
      TITLE Beta_NJ;
      LINK TAXA = TaxaForAnalysisStep11032;
      TREE tree_1 = [&R] ((Dictyostelium_fasciculatum_tyr:0.148043,Polysphondylium_pallidum_tyr2:0.144522):0.37322,(((Amphimedon_queenslandica_tyr:0.421537,(Aspergillus_nidulans_tyr2:1.0E-6,Aspergillus_nidulans_tyr1:1.0E-6):0.831261):0.443308,(Ciona_intestinalis_tyr1:0.429205,(Saccoglossus_kowaleksii_Hc:0.533673,(Ciona_intestinalis_tyr2:0.017903,(Ciona_intestinalis_tyr4:1.0E-6,Ciona_intestinalis_tyr3:1.0E-6):0.008044):0.6238):0.018162):0.477959):0.231181,(Epiperipatus_sp_Hc:0.516927,((Limulus_polyphemus_HcB:0.249796,((Euphrynichus_bacillifer_HcA:0.137,Mastigoproctus_giganteus_HcA:0.195513):0.072018,(Limulus_polyphemus_HcA:0.207161,(Euphrynichus_bacillifer_HcB:0.151938,Mastigoproctus_giganteus_HcB:0.175275):0.096127):0.0):0.07058):0.159241,(Daphnia_pulex_tyr:0.450521,(((Bombyx_mori_tyr1:0.343451,Bombyx_mori_tyr2:0.339851):0.0,((Tribolium_castaneum_tyr1:0.226379,(Tribolium_castaneum_tyr2:0.0,Tribolium_castaneum_tyr3:0.003247):0.139283):0.072033,(Drosophila_melanogaster_tyr2:0.23511,(Drosophila_melanogaster_tyr1:0.15483,Anopheles_gambiae_tyr1:0.18285):0.067959):0.027211):0.055801):0.025468,(Drosophila_melanogaster_tyr3:0.298486,((Anopheles_gambiae_tyr2:0.199979,(Anopheles_gambiae_tyr6:0.078274,Anopheles_gambiae_tyr3:0.06061):0.208485):0.025409,((Anopheles_gambiae_tyr8:0.243437,Anopheles_gambiae_tyr7:0.225402):0.096142,(Anopheles_gambiae_tyr9:0.308068,(Anopheles_gambiae_tyr5:0.225987,Anopheles_gambiae_tyr4:0.113236):0.114784):0.007033):0.008612):0.022488):0.079372):0.1128):0.125751):0.00869):0.194737):0.37322);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr61758]


END;