#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 14, 2026; 9:32 GMT

TreeBASE (cc) 1994-2008

Study reference:
Campbell M.A., Staats M., Van kan J., Rokas A., & Slot J.C. 2013. Repeated loss of
an anciently horizontally transferred gene cluster in Botrytis. Mycologia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S14010]

[ The following blocks are input data for analysis step 11112 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep11112;
        DIMENSIONS NTAX=7;
        TAXLABELS
            Aspergillus_carbonarius
            Botrytis_cinerea_B05.10
            Botrytis_cinerea_T4
            Botrytis_tulipae
            Fusarium_fujikuroi
            Fusarium_oxysporum
            Fusarium_verticillioides
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16367]

	TITLE 'bik2_matrix';
	LINK TAXA = TaxaForAnalysisStep11112;
	DIMENSIONS NCHAR=1470;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                    10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990       1000       1010       1020       1030       1040       1050       1060       1070       1080       1090       1100       1110       1120       1130       1140       1150       1160       1170       1180       1190       1200       1210       1220       1230       1240       1250       1260       1270       1280       1290       1300       1310       1320       1330       1340       1350       1360       1370       1380       1390       1400       1410       1420       1430       1440       1450       1460       1470   ]
[                                     .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .   ]
Aspergillus_carbonarius      ATG---GCCGAGTCCAACGGTCATTTCCGAGTCGTCATTGTTGGTGGTGGGATTGCCGGCCTGACGCTTGCTTTGGCCTTTGAACGGCTCGGAATCAACTACGCTCTCCTCGAAGCCCGTGAGACGTTGGAACCGGAATATGGGGCTGGAGCTGGCGTGGGCCTGCAGCCTAACGGACTGCGCATCCTCGATCAACTCGGGCTGTTGGAGGAGATCGAGAAGCATACACTTCCCTTGGAGACATGGATGTCGTTGGATGCTAGCGGGAGGCTGCTCGCTACGTCTCGAACGATGAGCATGTATCGTTCCAGTCTCGGATACAGTATCATTTTTGTAGAGCGTCGGAAGCTCCTCCAGATTCTGTCAAGTCGTCTGAAAAATCGGGGGTCGATCCGGACATCTGCCTGCGTCGAATCGATCGAGGAAAGCGACGAACATGTCATAGTTCGCACCTCGGACGGTCTCTCCATCACCGCCGATGTGGTCGTGGGCGCCGACGGGGTCCGTAGTCGCGTCCGCAGTTTTATCGACAGGATGGTCCACAACGACGTCGATGACTGTATTGAT---------------------------------------------------CCGGGGGATCGCTTCACCGTCTATCGAGAAAAGGCAAACATCGTCGGGTTTGCCGGCAAAGATGGTGTCGTCTTCTGGTTTGTCTTTGAGCGTCTGGACCACTCCTACCCCTTGTCGATGTGTCCGCGATACACCGCAACCGATGCCGAGACGCTCTGCCAAACCGTGACCGACGTACAGATAACCCCGTCCGTGCGATTTGCAGACCTCTACACGAATCGCATCGTCGCTACCAAAATGGCTGCCGAAGAGGGCGTAGCCAGGACATGGCACACCCGCCGAACTGTTATCGTGGGTGACGCAGCACACAAGATGACCCCTGCCGGCGGCATGGGTGCCAATCAAGCCATCGAGTCGGTGGCCATCTTAGTAAACGAGATCATGAAAGCCGAGAACGCATCATCATCTAACCGAAGGCCTTCCCGCGAGTCGGTGCATTCAGCCCTAACACGGTACGCAGAACAGCGCATCCGAGAATCAGCCCCGGCTGTAGAGAGGTCGCGAACGATCTGCGAAGCGCTTTTCTGCAACGAAGGACCGGCAATTCCCAAGCTCAGACAAGCGTTTAGTCTATCAGATGAGGAGTTGCTATCCCGTGTACTGGCAGAATTTTCTCGTGCACCGATCTTGGAGAATCTTGCGCTTTCGCCTAGAGGGATCCAGTACGAGGAGATGGCTACCTCTGTGAAAGAGAGGACGATGGAGATCGCGATGGCCACTCAGCAGAACGGGCAGCTGTAG---------------------------------------------------------------------------------------------------------------
Botrytis_cinerea_B05.10      ATG---GCCAAACCCAACCAACATTATGAGGTTATCATCGCCGGAGGAGGAATTGCTGGAGTGACGCTCGCGCTGATGTTTGAGAAACTCGGCATCAGCTATTTCCTCCTCGAGGGTCGCGATACTCTCGAGTCTGATAGAGGCGCTGGGATCGGTCTG------CAGCCAAATGGACTGCGTATCCTTGATCAGCTTGGCCTCGTGGAGGACATTGAGGAGGCAACTATACCACTTGAGAAGTGGTTCTCTTATGACAGCGAGGGTAACTTGATGAATGACTCTGACGCCATGGGCCAATATCGTGAGAAGATCGGATATCCTGTTGCCTTCATTGAGCGTCGCAAGCTTCTACCTATTATGGTTCGTCACATTAAACGCACAGAATGTGTCAGGACTTCAGCACGCGTGGCTTCAATTGAGGAGAGTGACGACCATGTCACTGTGACCACGACCGATGGATTGTCTCTTACCGCAGATATTGTTGTTGGTGCCGATGGCGTGCGAAGCGCTGTCCGCACACACATTGACTCCAAGCTTCCTGAAGCATTGACTGCAGATGACTTC------------------TATGGTATGTCAGCGCCCACTGAAGGCATCGCCCCCGGTGAACGCTTCGCCGTTTACCGAGAGAACCAAACAGTCATTGGCTTCACGGGCAAAGACGGCATTGTGTTCTGGTTTGTCTTCGAGAATCTCAACCACAACGTCCCTCTGTCTCAGGCCCCACGATACACCGAAGCTGAGGCCGAGGCTCTCTGCAAAAGCGTTGCCCATACACAGGTCACTCCAAAGCTGAAGTTTGGAGAGATCTACAAGAATCGTGTAGTGGCAGTCAAGATTGGTGTTGAAGAAGGCGTCGCGAAAGGATGGCACACTGATCGTGCTGTCATTGTCGGCGATGCAGCTTGTAAGACTACACCAGCTGGTGGACAGGGCGCTAACCAAGCCATTGAGTCATGCGCCGTCTTCGTCAACAAGCTCATCAAAGCCAAAAAGGCACGTCAGCCTGGTGAAAAGCTGTCTAGCGAGGCTGTCAAGTCCGTGCTCGCAAGCTATGCTCAAGAGCGTGCACAGCCAGCTACTACAGCCCTGGAAAGATCTCAAATGGTTGGCAAGGCGCTGTTATGCACTCCAGGGCCTGCAACTACTCTTGTAAAGGATATGTTGAAGCTCAGTAACGAAGACTGGCTTTTGCGTGCGTTTATGGCACTTTCTGCTGCGCCGTATTTGGAGGATGTTGAGCTTACGGCTAGAGGACATCTTTATAACAAGGCTGTTAAGGAAGCGCAGGCTGAGATGGCGAGACGCCAGAAGGTAGCGAAGGAGATTAAGGAGGCGGAAGAGAAAGAGAGTAAGCAGGCTGCGAGTATTCAAGAGTCTGAGCAGCGGAATGACTTTGCAGGTCTTCGAAATCCAGTTCAGGCAGCGACTGGAGTCGTTGAAGTTGGTTCT
Botrytis_cinerea_T4          ATG---GCTGAACCAAACCAGCATTATGAAGTCATCATCGCCGGAGGAGGAATCGCTGGAGTCACTCTGGCGCTGATGTTTGAGAAACTCGGCATCAGCTATTTTCTCCTTGAGGGTCGTGATACTCTTGAGTCTGATCGAGGCGCTGGTATTGGTCTG------CAGCCGAATGGACTGCGTATTCTTGATCAACTGGGCCTCGTGGAGGATATTGAGGATGCTACTATTCCGCTTGAGAAGTGGTTCTCTTATGACAGTGAGGGGAACTTGATGAATGACTCTGACGCCATGGGTCAGTATCGTGAGAAGATTGGATATCCTGTTGCGTTCATTGAGCGCCGCAAGCTGCTGCCCATCATGGTTCGTCACATTCAGCGCACAGAATGTGTCAGGACTTCCGCGCGCGTTGCTTCAATTGAGGAGAGCGAGAACCATGTCACTGTGAGGACAACTGATGGCTTGTCTCTTACAGCAGACATCGTCGTTGGTGCTGATGGCGTGCGAAGTGCTGTACGCACACACATTGACTCAAAGCTTCTTGAACCATTGACTGCAGATGACTACGTTGCCTGCTCCACAGTCTACGGCATGTCAGCGCCCACCGAAGGAATCGCCCCAGGTGAACGCTTCGCTGTCTACCGAGAGAACCAAACAGTTATCGGCTTCACAGGCAAAGACGGAATTGTATTCTGGTTCGTCTTTGAGAACCTCAACCAGAACGTCCCGCTGTCTCAGGCTCCACGATACACTGAAGCTGAAGCCGAGGCTCTCTGCCTAAGCGTTGCTCACACGCAGGTCACCCCAAAGCTCAAGTTTGGCGAGATCTACAAGAACCGTGTAGTAGCTGTCAAGATTGGAGTTGAAGAAGGTGTCGCGAAGGGATGGCATACTGATCGCGCTGTCATTGTCGGCGACGCAGCTTGTAAGACTACACCGGCTGGTGGACAGGGCGCCAACCAGGCTATAGAGTCCTGCGCCGTGTTCGTCAACAAGCTCATGGCAGCTCGAAAGGCACTTCAGCCTGGCGAGAAGCTGTCTAGCGAGGCTACCAAGTCCATTCTCGCAGGCTATGCTCAAGAGCGCGCACAGCCAGCTACTACAGCCTTGGAAAGATCTCAAATGGTTGGCAAGGCACTTCTCTGCACGCCTGGTCCTGCAACTGCTCTTGTCAAAGACATGTTAAAGCTGAGTAACGAGGACTGGCTTTTGCGTGCGTTTATGGCACTTTCTGCTGCGCCGTATTTGGAGGATGTTGAGCTTACGGCTAGAGGACATCTTTATAACAAGGCTGTTGATGAAGCGAGGGCTGAGATGGCGAGACGTCAGAAGGTGGCAAAGGAGGTCAAGGAGGCCGAGGAGAAGGAGAGTCAACAGGCTGTGATTATGAAGGAGTCTGAGCAGAGGAATGAGTTTGTGGGACTTCGGAACCCGGTACAGGCAGCCACTGGTGTCGTCGAGGTTGGTTCT
Botrytis_tulipae             ATG---GCTGAACCAAACCAGCATTATGAAGTCATCATCGCTGGAGGAGGAATCGCTGGAGTTACTCTCGCGCTGATGTTTGAGAAACTCGACATCAGCTATTTCCTCCTCGAGGGTCGCGATACTCTTGAGTCTGATAGAGGCGCTGGTATTGGTCTG------CAGCCAAATGGCCTCCGTATTCTTGATCAGCTTGGTCTCGTGGAGGATATTGAGGAGGCTACTATTCCGCTTGAGAAGTGGTTCTCTTATGACAGCGAGGGGAACTTGATGAATGACTCTGACGCCATGGGTCAATATCGTGACAAGATCGGATATCCTGTTGCCTTCATTGAGCGCCGCAAGCTGCTACCTATCATGGTACGACACATTCAGCGCACAGAATGTGTTAAGACTTCAGCACGCGTTGCTTCAATTGAGGAGAGCGAGGACCATGTCACTGTTACAACAACAGACGGCTTGTCTCTTACTGCAGACATTGTCGTTGGTGCTGATGGCGTGCGAACGCT{GT}GTACGCACACACATTGACTCAAAGCTGCCTGAACCATTGACTGCAGATGATTTAGTTGCCTGCTCCACAGTCTACGGCATGTCAGCACCCACCGAA-GTATCGCCCCCGGTGAACGCTTCGCCGTCTACCGAGAGAACCAAACAGTTATCGGCTTCACGGGCAAAGATGGAATCGTATTCTGGTTTGTATTTGAGAATCTGAACCGGAACGTCCCGCTCTCTCAGGCCCCGCGATACACTGAAGCTGAAGCAGAGGCTCTCTGTCTAAGCGTCGCTCATACACAGGTCACTCCCAAGCTCAAGTTTGGTGAGATCTACAAGAACAGTGTAGTGGCGGTCAAGATTGGCGTTGAAGAAGGTGTCGCGAAGGGCTGGCACACCGATCGCGCTGTGATTGTTGGCGATGCAGCTTGTAAGACTACACCGGCTGGTGGACAAGGCGCCAACCAGGCCATAGAGTCCTGCGCCGTCTTCGTCAACAAGCTCATGGCAGCGCGAAAGGCAAGCCAGTCAGGCGACAAGCTGTCTAGCGACGTCGTCAAGTCCGTACTCGCAAGCTATGCTCAGGAGCGCGCACAGCCAGCTACAACAGCCCTGGAGAGATCCCAAATGGTTGGAAAAGCACTGCTTTGCACTCCTGGACCTGCAACTACTCTTGTCAAAGACATGTTGAAGCTTAGTAACGAGGACTGGCTTTTGCGTGCCTTTATGGCACTTTCTGCTGCGCCGTATCTGGAGGATGTTGAGCTTACGGCTCGAGGGCATCTTTATAACAAGGCTGTTGAGGAGGCGCGGGCGGAGATGGCGAGACGGCAGAGGGTGGCCAAGGAGGTTAAGGAGGCGGAGGAGAAGGAGAGTAAACAGGCTGCGAGTATCAAGGAGTCTGAGCAGCGGAATGAGTTTGTGGGACTTCGGAATCCAGTGCAGGCAGCGACTGGGGTCGTTGAGGTTGGCTCT
Fusarium_fujikuroi           ATG---GCCAAACCCGCCCAACACTATGAGGTCATCATCGCTGGCGGAGGAATTGCTGGAGTCACTCTCGCGCTGATGTTTGAGAAACTCGACATCAGCTATTTCCTCCTCGAGGGTCGCGATACTCTCGAGTCTGACAGAGGTGCTGGTATTGGTCTG------CAGCCAAATGGACTTCGCATCCTAGATCAACTCGGTCTTGTGGAGGACATTGAGGAGGCTACTATACCGCTTGAGAAGTGGTTCTCTTATGACAGCGAGGGCAACTTGATGAATGACTCTGACGCCATGGGCCAATATCGTGAGAAGATCGGATATCCTGTTGCCTTTATTGAGCGTCGCAAGCTGCTACCTATCATGGTACGTCAAATTCAGCGCACAGAATGTGTTAGGACTTCAGCACGCGTTCCTTCAATCGAGGAGAGTGGCGATCATGTCACAGTCACAACAACCGACGGCCTGTCTCTTACAGCAGACATTGTTGTTGGTGCCGATGGCGTGCGAAGCACTGTCCGCACACATATTGACTCAAAGCTTCCTGAAGCATTGACTGCAGATGACTGTGTTGCCTGCTCCACAGTCTATGGCATGTCAGCGCCCACCGAAGGCATCGCCCAGGGTGAGCGCGTTGCCGTTTACCGAGAGAATCAAACAGTCATTGGCTTCACAGGTAAAGACGGGATTGTATTCTGGTTCGTCTTTGAGAACCTCGGCCAGAACGTCCCATTGTCTCAGGCCCCACGATACACCGAAGCTGAGGCCGAGGCCTTCTGACAAAGCGTTGCCCATACACAGGTCACTCCAAAGCTCAAGGTTGGAGAGATCTACAAGAACCGCTTTGTTGCTGTCAAGATTGGCGTTGAGGAAGGCGTCGCAAAAGGATGGCACACCGATCGCGCTGTTATTGTTGGCGATGCAGCTTGTAAGACTACACCAGCTGGTGGACAAGGCGCCAACTAAGCCATAGAGTCATGCGCCGTCTTCGTCAACAAGCTCATGAAAGCGAGAAAGGCTTGCCATCCTGGCGAGAAGCTGTCTAGCGAGGCAGTCAAGTCTATACTCGTAAGCTATGCTCAAGAGCGCGCACAGCCAGCTACTACAGCCCTAGACAGATCTCAAATGGTTGGCAAGGCACTTTTGTGCACTCCAGGACCTGAAACTACTCTTGTCAAGGACATGTTAAAGCTTAGTAACGAAGACTGGCTTTTGCGTGCGTTTATGGCACTTTCTGCTGCGCCGTATTTGGAGGATGTTGAGCTTACGGCCAGAGGACATCTTTACAACAAGGCTGTTAAGGAAGCGCAGGCAGAGATGGCGAGACGTCAGAAGGTAGCGAAGGAGGTTAAGGAGGCGGAATAGAAGGAGAGTAAGAAGGCTGCGAGTATTCAAGAGTCTGCTCAGCGGAATGAGTTTGCGAGTCTTCGAAACCCATTGCAGGCGGCGACTGGAGTCGTTGAGGTTGGCTCT
Fusarium_oxysporum           ATG---GCCAAACCCGCCCAACATTATAAGGTCATGATTGCTGAAGGAGGAATTGCTGGAGTCACTCTCACGCTGATATTTGAGAAACTCGGCATCAGCTATTTCCTCCTCGAGAGTCGCGATACTCTCGAGTCTAACAGAGGCGCTAGTATTGGCCTG------TAGCCAAATGGACTTCGCATCCTAGATCAACTCGGTCTTCTGGAGGACATTGAGGAGGCTACTATACCACCTGAGAAGTGATTCTCTTATGATAGCAAGGGCAACCTGATGAATGATTCTAACGCTATGGGCCAACATCGTGAAAGGATCGGATATCCTATTGCCTTTGTTGAGTGTTGCAAGTTGTTACCTATTATAGTACGTCACATTTAGCGCACAGAATGTGTCAGAACTTCAGCACGCGTTGCTTCAATCGAGGAGAGTGACGATTATGTCACAGTCACAACAATCGACGGCCTGTCTCTTACAGCAGACATTGTTGTTGGTGCCGATGGCGTGCGAAGCACTGTCCGCATACAAATTGACTCAAATATTCCTGAAGAATTGACTGCAGATGACTGTGTTGCCTGCTCCACAGTCTATGGCATGTCAGCGCCCACCGAAGGCATCGCCTAGGGTGAGCGCTTTGCCGTTTACCGAGAGAACCAAACAGTCATCGGCTTCACAGGTAAAGATGGGATTGTATTCTGGCTCGTCTTTGAGAACCTCGGCCAGAACGTCCCATTTTCTCAGGTCCCACGATACACCGAAGCTGAGGCCGAGGCTCTCTGCCAAAGCGTTGCCTATATACAGGTCACTCCAAAGCTCAAGTTTGGAGGGATTTACAAGAACCGCGTTGTTGCTGTTAAGACTGGCGTTGAGGAAGGCGTCGCGAAAGGATGGCATACTGATCGCGCTATTATTGTTGGCGATGCAGCTTGTAAGGCTTTATCAGCTGGTGGACAAGGCGCCAGCCAAGTTATAGAGTTATGCGCTGTCTTCGTTAACAGTTTCATGAAAGCGAGAAAGGCTTGCTATCCTGGCGAGAAGCTGTCTAGCCAGGCAGTCAAGTCTATACTCGTAAGCTATGCTTAAGAGTGTGCACAGCCAGCTATTATAGCCTTAGAGAGATTTCAAATGGTTGGCAAGGCGCCTTTGTGCACTCTAGGATCTGTAATTACTTTTGTTAAGGATATGTTAAAGCTTAGTAACGAAGACTGGATTTTGCGTGTGTTTATGGCGCTTTCTGCTGCGCTGTATTTGGAGGATGTTGAGCTTACAGCTAGAGGACATTTTTACAATAAGGCTGTTAAGGAAGCGCAGGCAGAGATGGCGAGATGTCAGAAGGTAGCGAAGGAGGTCAAGGAGACGGAAGAGAAGGAGAGTAAGAAGGCTGTGAGTATTCAAGAGTCTAATCAGCGGAATAAGTTTGCGAGTCTTCGAAACCCAGTTCAGGTAGCGACTAGAGCCGTTGAGGTTGGCTCT
Fusarium_verticillioides     ATGG--GCCAAACCCGCCCAACATTATAAGGTCATGATTGCTGAAGGAGGAATTGCTGGAGTCACTCTCACGCTGATATTTGAGAAACTCGGCATCAGCTATTTCCTCCTCGAGAGTCGCGATACTCTCGAGTCTAACAGAGGCGCTAGTATTTGCCTG------TAGCCAAATGGACTTCGCATCCTAGATCAACTCGGTCTTATGGAGGACATTGAGGAGGCTATTATACCACTTGATAAGTGATTCTCTTATGATAGCAAGGGCAACCTGATGAATGATTCTAACGCTATGGGCCAATATCGTGAAAGGATCGGATATCCTATTGCCTTTATTGAGTGTTGCAAGCTGTTACCTATTATAGTACGTCACATTCAGCACACAGAATGTGTCAGGACTTCAGCACGCGTTGCTTCAATCGAGGAGAGTGACGATTATGTCACAGTCACAACAATCGACGGCCTATCTCTTACAGCAGACATAGTTGTTGGTGCCGATGGCGTGCGAAGCACTGTCCGCATACAAATTGACTCAAATCTTCCTGAAGCATTGACTGCAGATGACTGTGTTGCCTGCTCCACAGTCTATGGCATGTCAGCGCCCACCGAAGGCATCGCCTAGGGTGAGCGCTTTGCCGTTTACCGAGAGAACCAAACAGTCATCGGCTTCACAGGTAAAGATGGGATTGTATTCTGGCTCGTCTTTGAGAACCTCGGCCAGAACGTCCCATTTTCTCAGGTCCCACGATACACCGAAGCTGAGGCCGAGGCTCTCTGCCAAAGCGTTGCCTATATACAGGTCACTCCAAAGCTCAAGTTTGGAGGGATTTACAAGAACCGCGTTGTTGCTGTTAAGACTGGCGTTGAGGAAGGCGTCGCGAAAGGATGGCATACTGATCGCGCTATTATTGTTGGCGATGCAGCTTGTAAGGCTTTATCAGCTGGTGGACAAGGCGCCAGCCAAGTTATAGAGTTATGCGCTGTCTTCGTTAACAGTTTCATGAAAGCGAGAAAGGCTTGCTATCCTGGCGAGAAGCTGTCTAGCGAGCCAGTCAAGTCTATACTCGTAAGCTATGCTTAAGAGTGTGCACAGCCAGCTATTATAGCCTTAGAGAGATTTCAAATGGTTGGCAAGGCGCCTTTGTGCACTCTAGGATCTGTAATTACTTTTGTTAAGGATATGTTAAAGCTTAGTAACGAAGACTGGATTTTGCGTGTGTTTATGGCGCTTTCTGCTGCGCTGTATTTGGAGGATGTTGAGCTTACAGCTAGAGGACATCTTTACAATAAGGCTGTTAAGGAAGCGCAGGCAGAGATGGCGAGATGTCAGAAGGTAGCGAAGGAGGTCAAGGAGACGGAAGAGAAGGAGAGTAAGAAGGCTGTGAGTATTCAAGAGTCTAATCAGCGGAATAAGTTTGCGAGTCTTCGAAACCCAGTTCAGGTAGCGACTAGAGCCGTTGAGGTTGGCTCT
;
END;

BEGIN CODONS;
CODONPOSSET * UNTITLED (CHARACTERS = 'bik2_matrix') = 
		1: 1-1468\3,
		2: 2-1469\3,
		3: 3-1470\3;
CODONPOSSET  CodonPositions (CHARACTERS = 'bik2_matrix') = 
		1: 1-1468\3,
		2: 2-1469\3,
		3: 3-1470\3;
END;
[ The following blocks are output data for analysis step 11112 ]
BEGIN TREES;
      TITLE 'bik2_tree';
      LINK TAXA = TaxaForAnalysisStep11112;
      TREE tree_1 = [&R] ((((Botrytis_cinerea_B05.10:0.007930106333753018,Botrytis_cinerea_T4:0.005138106471992754):0.07700336541142627,Botrytis_tulipae:0.020246613416277537):0.018825187120260267,(Fusarium_oxysporum:0.053214994576323504,(Fusarium_verticillioides:0.06159629419493651,Fusarium_fujikuroi:0.05917957541776331):0.04579042146416745):0.02672181456655931):0.42091238289486543,Aspergillus_carbonarius:0.42091238289486543);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr62044]


END;