#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 12, 2026; 12:03 GMT TreeBASE (cc) 1994-2008 Study reference: Herrera C.S., Rossman A., Samuels G.J., & Chaverri P. 2013. Pseudocosmospora - a new genus to accommodate Cosmospora vilior and related species. Mycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S14038] [ The following blocks are input data for analysis step 11181 ] BEGIN TAXA; TITLE TaxaForAnalysisStep11181; DIMENSIONS NTAX=21; TAXLABELS Corallomycetella_repens_AR4547 Cosmospora_coccinea_AR2741 Cosmospora_obscura_MF241484 Cosmospora_stegonsporii_AR4385 Cosmospora_viliuscula_GJS09411 Cosmospora_viliuscula_GJS10247 Cosmospora_viliuscula_GJS83197 Cosmospora_viliuscula_GJS86315 Cosmospora_viridescens__CBS102433 Dialonectria_episphaeria_CH1001 Dialonectria_sp_CH1014 Dialonectria_sp_GJS091197 Microcera_coccophila_GJS83198 Microcera_coccophila_GJS9850 Microcera_coccophila_MF241482 Microcera_larvarum_AR4580 Pseudocosmospora_eutypae_CH1101 Pseudocosmospora_eutypellae_AR4562 Pseudocosmospora_rogersonii_GJS9056 Pseudocosmospora_vilior_PC1246 Pseudonectria_pachysandricola_AR4592 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16461] TITLE Cosmospora_s.l._TEF; LINK TAXA = TaxaForAnalysisStep11181; DIMENSIONS NCHAR=365; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Corallomycetella_repens_AR4547 ---------------------------------GTCGTTCGCTGCGATATCAACACAATGCCACCTGTGCAACCCCTCCTCTCCCTCGA----------ACCAAAAATTTTCTC-------GGGCCCAT-------------AATTTTTTCTTGGTG-------GGG--GTTGCTACCCCGCCACCTGGCTGAGGTTGCA-TCTTGCACCGCCCCACTAGCCACCTCTTCTCGATTCG---------GCAGTCCCCAACACATATCGCATCGAACCCTCGAGAGGAGCAT-----------------------------------------GGCGCTGACAGT-CGTTGTCTACAGGAAGCCGCT Cosmospora_coccinea_AR2741 GAAATCCCCCGTCCAT-CCCTCGATGCGACTTCGTCGTCCA---------CGAAACCACAC----AATCTT-----ACCCCTCATACAA----------AAACATTTTTTTTGC-------GGGCCCATTTCTTTGTTTC--AATTTTTTTCTGGTG-------GGGTGGTTGTTACCCCGCCACCTGGCAGCGGTTGCA-ATTTTCCCTGCCCCACCAGTGTCGCTG-CACACCTCGCACCATCCTCTAGTCGCTTCGCAACACC---------ATGAGTCGAAAACAC-----------------------------------------CTTGCTGACTGTATTTTGTCTATAGGAAGCTGCC Cosmospora_obscura_MF241484 ATTCCGCATCACCCAT-CCGTCGATTCGACCTCGTCGTTCGTTGCC--CCCGAAACCACAC----AAGCCTGGCTTACCCCTCCTCCCA----------CGAAAACATTTTTCTGCG----GGCCCCATTCCTTTGTTCGAATTTTTTTTTTTGGTG-------GGGTGGT--TTACCCCGCCACCTCGCAGCGGCTGTA-ATTTGCCCTGCCCCACCAGCGCTTTTGTACCGCACGACCGTCTCCCGCCGC-------------------------------------------------------------------------------ATCACAAGTTCCAGTTCACCGAGACGAAACATTA Cosmospora_stegonsporii_AR4385 ACTTTGCATCACAAC--CCGTCGATTCGAACTCGTCATTCGTTCCC--TTCGAAATCACAC----AAGCCCATTT-ACCCCTCCCGCGA----------AAAAAAAAACATTTTTTGC---GGGTCCACTTTGTTCAG----TTTTTTTCTTTGGTG-------GGGTGGCT-TTACCCCGCCCCATGGCAAAGTTGC---ATTTTGCTTGCCCCACCAGCGTTT----TGCAACTGATAGCCTCCTTCCCTCCCTCGAGTCGTCACAACTATACCGCCGAGAGAAACAT-----------------------------------------GATGCTAATTAC-ATTCGTCTATAGGAAGCTGCC Cosmospora_viliuscula_GJS09411 -------------CAT-CCGTCGATTCGACATTGTCGTTCG---------CGAAACCACAC-------------CTACCCCTCCGAAAA----------ATAAATTTTTTTTTTTTTCAGAGGACCCATTTATTTGT-----AATTTTCTTTTGGTG-------GGGTGGTT-TTACCCCGCCACCTGGCAGAGGTTGAA-ATTTACCATGCCCCACCCATGTCTTTTGTGCATCGCCAAGCCTATTATGGCCAACTGAGAAACCA---------AATCAGAAAGAACAT----------------------------------------------------------GT--------------- Cosmospora_viliuscula_GJS10247 ATCTTGCCCTGCCCAT-CCGCCGATTCGACTTGGTCGTTCG---------CGAAACTACAC----AATCCCACTTGACCCCTCCCAAAA----------GAAATAATATTTTTTCTGCG--GGTCCCATTTCTTTGTT----CAAATTGTTTTGGTG-------GGGTGATTTCTACCCCGCTACCTGGCGGACGTTGCA-GTCTGCCCTGCTGCCCCACCAGCGTTC-TACGCCTCACAGCCTCGTCTAGCTATCGAGCAACTCA---------ATTAGCAGATGACAT-----------------------------------------GATGCTGACTT--TATCGTCTATAGGAAGCTGCC Cosmospora_viliuscula_GJS83197 ATCTTTCTCTACCCAT-CCGTCGATTTGACCTCGTCGTTCG---------CGAAAACACAT----AATCCCACTT-ACCCCTCCCCCCG----------AAAACAATTTTTTTCTGC----CGGCCCATTTCTTTGTTC---AATTTTTTTTTGGTG-------GGGTGGTTTTTACCCCGCCACCTGGTAGAGGTTGCA-ATTTACAATGCCCCACCGGGTCTTGG--TGCACCTCGCAGCCTCGTCGAACCGTTGAGAGCAACT----CAATATTCCGAAGACAACAT-----------------------------------------CATACTGACTAT-TCTCGTCTATAGGAAGCTGCC Cosmospora_viliuscula_GJS86315 ATCTTTCTGTGCGCATCCCGTCGATTTGACATCGTCGTTCA---------CGAAACAACAT-------------CTACCCCTCCCCCCG------AG--CACAATATTTTTTTTTCACAGCGGGTCCATTTGTTTTTTTTTTGAAATTTTTTTGGTG-------GGGTGCTT-TTACCCCGCCGCCTGGTAGAGGTTGCA-ATTTATCA-GCCCCACTCACGTCTTTC-TGCATCACCAAGCCTAATCTGGCCACTGAGGAGCTC----------AATCAGAAATAACAT----------------------------------------------------------G---------------- Cosmospora_viridescens__CBS102433 ATTTTACTCTGCCCATCCCGTCGATGCGACGACAACGTTCG---------CGAAACCACAT----AATCCCACCT-ACCCCTCCCATGA----------AAAACAACTTTTTTGC------GGCCCCATTTCTTTATTTCA-ATTTTTTTTTTGGTG-------GGGTGGTTTTTACCCCGCCACCTGTCGCAGGTTGCA-ATTTGCCCTGCCCCACCAGTGCCTTCG-GGCAGCTCACAGCCTCTTCGAAACCCCCGAAACCCCCTCGCATATAATCAAGAGAAAACAC-----------------------------------------GATGCTGACTGT-TTTCGTCTATAGGAAGCTGCC Dialonectria_episphaeria_CH1001 ----TGCTCTCTTTGT-CCTCCGATCCGGTCTTGCTTGTTGTCCCT----CCGAATCTCATAATCAATCCCACCT-ACCCCTCCCAGGA----------ATAAATAAATTTTACTCCTGC-GGGCCATTTCCCTGCCATTAGTTTTTTTTTTTGGTG-------GGGACATT-TTACCCCGCCACCTGCCAG----TGCG-ATTTGCCCTATCCCCACCTGTTTATTA-CCCTGTACATTGAACCCTTCAGCCTTGCCCGTTAACTCATATGAGAAGAAAAAAAGAATAT-----------------------------------------GTTGCTGACTT--CATCATTTATAGGAAGCTGCC Dialonectria_sp_CH1014 AGTCTGCTCTATTTGC-CCTCCGATACGGTCTTGCTCGTTGTCCCC----CGAAGTCTCATAATCAATCCCACCT-ACCCCTCCCAGAA----------ATAAATAATTTTTATTACTGC-GGGCCTTTTCCCTGCCTCTG-GGTTTTTATCTGGTG-------GGGTCATT-TTACCCCGCCACCTGCCAG----TGCG-ATTTGCCCTAGCCCCACCTGTTTTTTT-ACCTGTACACTGAGCCTTGCAGCCTTGCTCGTCAACTCGCAT---------AGAAAATTGT-----------------------------------------GGCGCTGACTC--TATCATTTATAGGAAGCTGCC Dialonectria_sp_GJS091197 ATTCTGTTCCATTTAC-CCGTCGATCCGGCCTCGCTCGTTACCCC-----CGAATTCTGAT----AATCCTGCCT-ATCCCTCCCAGGA----------AATAACAAATTTTCTTTCTGC-GGGCCTTTTCCTTGTTGCCTCTAATTTTTTTTGGTG-------GGGCCATT-TTACCCCGCCACCTTCCAGAGCCTGCG-ATTTGCCCTACCCCACCAGTCCCTTTG---CCCTGCACACCGAACTGCAGCCTTGCTCATCAACTCACGT---------GGAAAATCGT-----------------------------------------GTCGCTGACTT--TATCAACCATAGGAAGCTGCC Microcera_coccophila_GJS83198 ATTTTACTTCACCTCC-CCATCGATCCGACCTCGTCGCTCGTCGCCATCTCGAAACGCTGC-------GCCTGTT-ACCCCTCCTTCCA----------CACAAAAAATTTCAC-------TGCCCCGTTAA----------ATTTTTCGTTTGGTG-------GGGCAAT--TTACCCCGCCACATGGTAGAGGTTATGGGTTTATCCCAGACAGCTTCCATCATCCATCAGCCTCGTTGCATGCC----------------------------TTCTGGTTGAAACAC-----------------------------------------AATGCTAACTA--ATTCGTCAACAGGAAGCTGCT Microcera_coccophila_GJS9850 TTTCCCCTTTTACCTTCCCATCGAACCGACCTCTTCGCTCGTTCCC--CTCGAAACGCGGC-------GCCGGTT-ACCCCTCCCGCAC----------ACAAAAAATTTTTAC-------TGCCCCGCCGAATTTTT----TATTTTATTTTGGTG-------GGGCGAC--TTACCCCGCCACTCGTCTGAGGCTGCGGCGTTGCCCTGCCCCACACATCTGCATC------TACACGGCTTCTACGGCTATCAGCCTTGTTACATGTCTTCCAGCTGCATGAGACAC-----------------------------------------AATGCTAACTG--AATCACCAACAGGAAGCCGCT Microcera_coccophila_MF241482 ATTTCGCACAACGCAC-CCATCGATCCGACTTCGTCGCTCGTTGCACTCTCGAAGCACTGC-------ACCTGTTGTTCCTTCCCACAA----------ACAAAAAATTTTCAA-------TGCCCCATT-------------AAATTTTTTTGGTG-------GGGCAGT--TTACCCCGCCACCTTGCAGACGTCGTAGTCTTGCCCTGCCCCACAA----------------TCACTCCCTTCAAAGAGCTTCACCATCAGCCTCGTTCTACGTCCTGTTAAAGTAC-----------------------------------------GATGCTAACTT--ACTCGTCAATAGGAAGCCGCT Microcera_larvarum_AR4580 ATTCCACCCAACGTTC-CCATCGATCCGACTCCGTCGCTCGTTGCACTCTCGAAGCACTGC-------ACCTGTTGTCCCCTCCCACA-----------AACAAAATTTTCCAA-------TGCCCCATT------------AATTTTTTTTTGGTG-------GGGCAGT--TTACCCCGCCACCCAGCAGACGTCGTAGTCTTGCCCTGCCCCACAA----------------TCACTGCCTTCAAAGAGCTTCACCATCAGCCTTGTTCCACGTCTTGTTGAAACAC-----------------------------------------AATGCTAACAT--ACTCGTCAATAGGAAGCCGCT Pseudocosmospora_eutypae_CH1101 ATACTGTTCTGCTCGT-CCCTGAACTCGACCTCGTCGTTCGTTGCCCCTCGAAACCCACAC-----TTTTTTCCTTGCCCCTCCCACCGAGAAAAAGCGAAAATATTTTTTCATGGGAGGGGGCTCCACTACTTG-------TTGATGGTGATAGTG-------GGGTGGT--TTACCCCGCCACCTGCACGAGTTGCACACTCTACCCTCAGCAGCGGCTTCGCCTTCTCCAGCCCGCAGCACATGTTTGTCAACGCAAAATCCC-----------------------------------------------------------------GAGGCTGATCA--TCTCGTCAACAGGAAGCTCAA Pseudocosmospora_eutypellae_AR4562 ATACTGCTTT-CCCGT-CGCTCGAATCGACCTCGTCGTTCGTTGCC--CTCGAAACCACA-----AATCCTTTTT-ACCCCTCCTTTGGCGGAAAAA--AAAACAAATTTCCATTTCCTTTGGCCCCACTTCCTGCTT----CGAGTTCTCTAGGTGGGTGGGTGGGTGGTC-TTACCCCGCTACCTGCCAGACGTCGCA-ATTTTTGCCCTGCTTCCACTCGTGATTCTGCCTTTATTCTCTGGCTTCGCGTTG--------------------ATGAATTGAAAACTC-----------------------------------------GTTGCTAACAAC-ATTCGTCTATAGGAAGCTGCT Pseudocosmospora_rogersonii_GJS9056 ---CTGCTTTGCCCGT-CGCTCGAATCGACCTCGTCGTTCGCTGCC--CTCGAAACCACAC----AATCCTTTTT-ACCCCTCCTTTGGCGAAAAAA--AAAACAAATTTCCATTTCCTTTGGCCCCACTTCCTGCTT----CGAGTCCTCTTGGTGGGTGGGTGGGTGGTC-TTACCCCGCTACCTACAAGACGTCGCA-ATTTTTGCACTGCTTCCACTCGTGATTCTGCTTTTTTTCCTCTGGCCTCCGCGCTC------------------AAGAATTACAAACCT-----------------------------------------GATGCTAACAAC-ATTCGTCTATAGGAAGCTGCT Pseudocosmospora_vilior_PC1246 ATATCACTTGTCCCCG-TCGTCGATTCGATCTCGTCGTCCCTTGCC--CTCGAGACCACAC----AATCC-TCTT-ACCCCTCCTCCGG-AAAAAAA--CACAGAAAAATCCATCTGCTTGCGCCCCACTCCTTGCTT----CCAGTGCCTGTGGTG-------GGGTTTCA-TGACCCCGCCACCTGCCTGACTTGTCA-TTTCGCAAGCCGCCGCCTCGCCCATCGATACTTGGTATCTCT-----------------------------------AGTGAGAGACAC-----------------------------------------TTATCTGAC-----TCTGTTTACAGGAAGCTGCC Pseudonectria_pachysandricola_AR4592 ATTCC------------CCGTCGAATTCCCTCCCTCGCGAATCGCT-------------------CTGCGCCCGCTGCCCCTCCCGAGT----------CACAAATATTTTGCGGTCCGACCG-------------------TGATTTTTTTTGGTG-------GGGCATT--TTACCCCGCCGGTCGGGAGACGTTGGA-CAAAGCCCTGATCC--------------------------------------------------------CTGCACACAAAAAAAACACACCAAACCCTCATGGCGCGCATCGTCATGTGGTCCGCAGCAGACGCTAATCG--GTTCAATAATAGGAAGCCGCC ; END; [ The following blocks are output data for analysis step 11181 ] BEGIN TREES; TITLE tef_overview_con; LINK TAXA = TaxaForAnalysisStep11181; TREE con_50_majrule = [&R] (Corallomycetella_repens_AR4547:0.333986,(((Microcera_larvarum_AR4580:0.042163,Microcera_coccophila_MF241482:0.068431):0.12737,Microcera_coccophila_GJS83198:0.246313,Microcera_coccophila_GJS9850:0.305125):0.142979,Pseudonectria_pachysandricola_AR4592:0.573867):0.155713,(((Cosmospora_coccinea_AR2741:0.203949,(((Pseudocosmospora_eutypellae_AR4562:0.050071,Pseudocosmospora_rogersonii_GJS9056:0.059384):0.176573,Pseudocosmospora_vilior_PC1246:0.3937):0.135776,Pseudocosmospora_eutypae_CH1101:0.478437):0.131336,Cosmospora_viridescens__CBS102433:0.140506,((Cosmospora_viliuscula_GJS09411:0.097609,Cosmospora_viliuscula_GJS86315:0.153674):0.127107,Cosmospora_viliuscula_GJS83197:0.157438):0.035409,Cosmospora_viliuscula_GJS10247:0.189522):0.047767,((Dialonectria_episphaeria_CH1001:0.120384,Dialonectria_sp_CH1014:0.052151):0.152901,Dialonectria_sp_GJS091197:0.1175):0.330855):0.034677,(Cosmospora_stegonsporii_AR4385:0.263999,Cosmospora_obscura_MF241484:0.285193):0.041779):0.119614); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr62280] END; BEGIN TREES; TITLE tef_overview_con; LINK TAXA = TaxaForAnalysisStep11181; TREE con_50_majrule = [&R] (Corallomycetella_repens_AR4547:0.333986,(((Microcera_larvarum_AR4580:0.042163,Microcera_coccophila_MF241482:0.068431)0.98:0.12737,Microcera_coccophila_GJS83198:0.246313,Microcera_coccophila_GJS9850:0.305125)0.54:0.142979,Pseudonectria_pachysandricola_AR4592:0.573867)0.63:0.155713,(((Cosmospora_coccinea_AR2741:0.203949,(((Pseudocosmospora_eutypellae_AR4562:0.050071,Pseudocosmospora_rogersonii_GJS9056:0.059384)1.00:0.176573,Pseudocosmospora_vilior_PC1246:0.3937)0.98:0.135776,Pseudocosmospora_eutypae_CH1101:0.478437)0.96:0.131336,Cosmospora_viridescens__CBS102433:0.140506,((Cosmospora_viliuscula_GJS09411:0.097609,Cosmospora_viliuscula_GJS86315:0.153674)1.00:0.127107,Cosmospora_viliuscula_GJS83197:0.157438)0.59:0.035409,Cosmospora_viliuscula_GJS10247:0.189522)0.71:0.047767,((Dialonectria_episphaeria_CH1001:0.120384,Dialonectria_sp_CH1014:0.052151)1.00:0.152901,Dialonectria_sp_GJS091197:0.1175)1.00:0.330855)0.56:0.034677,(Cosmospora_stegonsporii_AR4385:0.263999,Cosmospora_obscura_MF241484:0.285193)0.51:0.041779)0.58:0.119614); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr62279] END;