#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 12, 2026; 8:32 GMT TreeBASE (cc) 1994-2008 Study reference: Herrera C.S., Rossman A., Samuels G.J., & Chaverri P. 2013. Pseudocosmospora - a new genus to accommodate Cosmospora vilior and related species. Mycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S14038] [ The following blocks are input data for analysis step 11182 ] BEGIN TAXA; TITLE TaxaForAnalysisStep11182; DIMENSIONS NTAX=23; TAXLABELS Corallomycetella_repens_AR4547 Cosmospora_coccinea_AR2741 Cosmospora_flavoviridis_IMI338173 Cosmospora_obscura_MF241484 Cosmospora_stegonsporii_AR4385 Cosmospora_viliuscula_GJS09411 Cosmospora_viliuscula_GJS10247 Cosmospora_viliuscula_GJS83197 Cosmospora_viliuscula_GJS86315 Cosmospora_viridescens__CBS102433 Dialonectria_episphaeria_CH1001 Dialonectria_sp_CH1014 Dialonectria_sp_CH1106 Dialonectria_sp_GJS091197 Microcera_coccophila_GJS9850 Microcera_coccophila_MF241482 Microcera_larvarum_AR4580 Pseudocosmospora_eutypae_CH1101 Pseudocosmospora_eutypellae_AR4562 Pseudocosmospora_joca_AR4779 Pseudocosmospora_rogersonii_GJS9056 Pseudocosmospora_vilior_PC1246 Pseudonectria_pachysandricola_AR4592 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16462] TITLE Cosmospora_s.l._tub; LINK TAXA = TaxaForAnalysisStep11182; DIMENSIONS NCHAR=580; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Corallomycetella_repens_AR4547 GACGCGTC---------CCTGATC-AGGAGCCCCTGAGC-CTACCCCGCCGAGGC-ATCCCATAACATAGGTCAGGCTGTATC---ACAGCTTCAAGACACAAGAACACGACGCGATATGT----------GGAAAC-GTCATGGCTAACTGTGCGGTTTTTTTGCGACATAGGTTCACCTCCAGACCGGCCAGTGCGTAAGT-AGCTCAAC-----GC------TCGATATTGT--TGCGACCCGACACGAAGCTCACCACGTTGCGATAGGGTAACCAAATCGGTGCCGCTTTCTGGCAGACCATCTCTGGCGAGCATGGTCTTGACAGCAATGGTGTCTACAACGGCACCTCTGAGCTTCAGCTGGAGCGCATGAGCGTCTACTTCAACGAGGTACGGGCC--GAAAATCACCCCATGCTTCCGCATCCGCTG-----TGACCAGCACCT--GACACGTCGTCTAGGCCTCTGGCAACAAGTATGTTCCTCGCGCCGTTCTCGTCGATCTCGAGCCCGGCACCATGGATGCCGTCCGTGCCGGTCCTTTCGGCCAGCTCTTCCGCCCCGACAACTTC Cosmospora_coccinea_AR2741 GACGCGTT---------CCTCAT--GCGAGCCCCTGATT-CTACCCCGCCGAAAC-ATTCCA-CCA-C-CGTCGGGCCATATC---GCAGCTTCAG-GCACA--GACGCCATGTGATGCTTGGGAACTGGAGGGAACAAAGATTGCTGACCATGTGG-TTTTTTGCGACATAGGTTCACATCCAGACCGGTCAGTGCGTAAGT-AACTCTGC-----AT------GCTGTCGTGT--TGCGGATCGAC---CAACTCACCATGTTTCAATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGCACCTCCGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTACG---T--GGAAATCACCTCACTTTTGGCTG------------GTTTCGGCTATT--GACACGTC--TTAGGCCTCCGGCAACAAGTATGTCCCTCGCGCCGTTCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGCCAGCTCTTCCGTCCCGACAACTTC Cosmospora_flavoviridis_IMI338173 GACGCGTC---------CCTGGC--CAGAGCCCCTGATT-CTACCCCGCCGAGGC-CTTCCA-CCA-CACGTGGAGCCATATCGCAGCAGCTTCGG-ACACA--GACACGATATGATATTC----------GAGAAC-ATGATGGCTAACTACGTGG-TTTTCCGTGATATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT-AACTCACT-----AT------TTCGACATGT--TGCCGGCCGAC---GAACTCACGATGTT-TGATAGGGCAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTCTATAACGGCACCTCCGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTATG---C--GGAAATCACCCCATTCGCGTTTT------------ATTTCGGCTACT--GACGCTTC--TCAGGCCTCTGGCAACAAGTATGTCCCTCGCGCCGTCCTCGTGGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCTTTTGGCCAGCTCTTCCGCCCCGACAACTTC Cosmospora_obscura_MF241484 GACGCGTC---------CCTGAGC-CAGAGCCCCTGATT-CTACCCCGCCGAGGC-CTTCCA-CCA-CACGTCGAGCCATATCGCAGCAGCTTCGG-ATACA--GACACGACGTGATATTTGA--------GAGAAC-ATGATGGCTAACTACGTGG--TTTCTGTGATATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT-AACTCACT-----AT------TTCGACGTGT--TGCCGGCCGAC---GGACTGACCATGTT-TGATAGGGCAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTCTACAACGGCACCTCCGAGCTTCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTACG---T--AGAAATCACCTCATTCGCGCTTT------------ATTTCGGCTACT--GACACTTC--TCAGGCCTCCGGCAACAAGTATGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCTTTCGGCCAGCTCTTCCGCCCCGACAACTTC Cosmospora_stegonsporii_AR4385 GACGCGTC---------CCTGATCAGAGAGCCCCTGATTCCTACCCCGCCGAAGC-AATCCA-CCA-CCCGTCGGGCCATATTGCAGCAACTTCAG-ACGCA--GACACGATGTGATATTT----------GGGAAT-GTTATGGCTAACAATGTGA-TTTTCTGTATCATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT-AACTCGCC-----AT------TTCAACGTGT--TGCGGACCGAC---GAACTCACAATGTTTTGATAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTACG---C--AACAATCACCCCATTCACGCTTT------------CTTTCGGCTACT--GACTCGTC--TTAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCTTTCGGCCAGCTCTTCCGCCCCGACAACTTC Cosmospora_viliuscula_GJS09411 GACGCGTT---------CCTGAT--TAGAGCCCCTGACT-TTACCCCGCCGAAAC-ATTCCA-CCT-CTTGTCGGGCTATATC---GCAGCTTCAG-AAACA--GACGCGATGCGATGCTT----------AGGAACAATGATTGCTAACCATGTGA-TTTTCTGCGACATAGGTTCACCTTCAGACCGGCCAGTGCGTAAGT-AACTCACC-----GT------CTCGTCATAT--CGCGGATCGGC---AAGCTCACGAAATCTTGACAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTCTACAACGGCAGCTCTGAGCTCCAGCTTGAGCGTATGAGCGTCTACTTCAACGAGGTACG---G--GGGAATCCGCTTACTTGCAGTC-------------GACACAGCTATT--GACACGTC--TTAGGCTTCTGGCAACAAGTATGTCCCTCGCGCCGTTCTCGTCGATCTCGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTTGGCCAGCTCTTCCGTCCCGACAACTTC Cosmospora_viliuscula_GJS10247 GACGCGTT---------CCTGAT--CAGAGCCCCTGATT-CTACCCCGCCGAAAC-ATTCCA-CCT-CCGTTGGGCCCATATC---GCAGCTTCGG-ACACA-GGACGCGATACGATGCTG----------GGGAACAACAATTGCTAACCATGTGT-TTTTCTGCGACATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT-AACTCATT-----GT------GTCGACGTGT--TGGGGACGACA---AAACTCACGGTGTCTTGACAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGAACCTCTGAGCTCCAGCTGGAGCGCATGAGCGTCTACTTCAACGAGGTTCG---T--GGGCACAGCTTTACTATTGTG--------------GGTGCGGCTATT--GACACGCC--TTAGGCTTCCGGCAACAAGTATGTCCCTCGCGCCGTTCTCGTCGATCTCGAGCCTGGTACCATGGATGCCGTCCGTGCTGGTCCCTTTGGCCAGCTCTTCCGTCCTGACAACTTC Cosmospora_viliuscula_GJS83197 GACGCGTT---------CCTGATC-CAGAGCCCCTGATT-TTACCCCGCCGAAAC-ATTCCACCCT-CACGTCGGGCCATATC---GCAGCTTCAGAACATC--GACGCGATGTGATGCTTG---------GGGAACAACGATTGCTAACCATGTGG-TTTTCTGCGACATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT-AACTCGCC-----AT------GCTGCCGTGC--TGCGGATCGAC---AAACTCACGATTTCTTGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCATGGCCTCGACAGCAATGGTGTCTACAACGGCACTTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTACG---C--GAAAATGCCTTCACTTGTGCTT-------------GGGTCGGTTATT--GACACGTC--TTAGGCTTCTGGTAACAAGTATGTCCCTCGCGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGATGCCGTTCGCGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTT Cosmospora_viliuscula_GJS86315 GACGCGTT---------CCTGAT---AGCGCCCCTGATT--TACCCCGCCGAAAC-ATTCCA-CCT-TGGGTCGGGCCATATG---GCAGCTTCAG-ACCCA--GACGCGATATGATGCTT----------GAGAACAACGATTGCTGACTCTTTGA-TTTTCTGCGATATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT-AACTCACT-----AT------CTCGTCAGGT--CGCGGATCGGC---AAGCTCACGATGTCTTGATAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGCGTCTACAACGGCAGCTCTGAGCTCCAGCTTGAGCGTATGAGCGTTTACTTCAACGAGGTACG---G--GGAAATACCCTCACTTCTGGGC-------------GATTTGGCCATT--GACACGTC--TTAGGCATCTGGAAACAAGTATGTCCCTCGCGCCGTCCTCGTCGATCTCGAGCCTGGTACCATGGACGCTGTCCGTGCCGGCCCCTTCGGCCAGCTCTTCCGTCCCGACAACTTC Cosmospora_viridescens__CBS102433 GACGCGTT---------CCTGAT--CAGAGCCCCTGATT-CTACCCCGCCGACAC-ATTCCA-CCA-CCCGTCGTGCCATATC---GCAGCTTCAG-ACACA--GACGCGATGTGATACTT----------GGGAACAAAGATTGCTAACCATGTGG-TTTTCTGCGACATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT-AACTCATC-----AT------GCTGTTGTGT--TGCCGATCGAC---GAACTCACGATGTTCTAATAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTCTACAACGGCACCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTACG---C--GGAAATCGCCTCATTTGTGGTT-------------GTTTCGGCTATT--GACACTTC--TTAGGCCTCTGGCAACAAGTATGTCCCTCGCGCCGTTCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTC Dialonectria_episphaeria_CH1001 GACGCGTC---------CGTGATC-AGGAGCCCCTGATT-CTACCCCGCCGAAGC-ATTCCA-CTT-CACATAGGGCCATATC---ACAGCTTCGG-ACACG--AACAAACTGTGGTGTTCTG--------GGGAACAATGATTGCTAACCATGTGG-TTTTCCGCGACATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT-AACTCGTC-----A-------GTTGCCGTGT--CGCGAAGCGTC---GAACTCACAATGTTATGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGCCTTGACAGCAATGGTGTCTACAATGGTACCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTAAG--------GAGCCACCGCCTCGACGCGTTTTCTCTCCCTATTTTTCAGCTGCT--GACACGTG--CTAGGCCTCTGGCAACAAATATGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGAGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTTC Dialonectria_sp_CH1014 GACGCGTC---------CGTGATC-AGGAGCCCCTAATT-CTACCCCGCCGAAGC-ATTCCA-CTT-CACGGAGGGCCATATC---ACAGCTTTGG-ACACA--AACAAGATGTGATGTTCTG--------GGGAACAATGATTGCTAACGATGTGG-TTTTCCGCGACATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT-AACTCATC-----A-------GTTGTCGTGTGCCGCGAAACGTC---GAACTCACCATGTTATGATAGGGTAACCAGATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAA-GGTGTCTACAATGGTACCTCTGAGCTTCAACTCGAGCGTATGAGCGTCTACTTCAACGAGGTAAA--------AA-CCACCGCCTACACGCGTTTTTCCTCCCTA-ATTTCAGCTACT--GACACGTG--GTAGGCCTCTGGCAACAAATATGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCTGTCCGAGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTTC Dialonectria_sp_CH1106 GACGCGTC---------CGCGATC-AGGAGCCCCTGATTTCTACCCCGCCGAAGC-ATTCCA-CTTCCCCGTTGGGCCATATC---GCAGCTTTGG-ACACG-GGATACGACGTGATGCTCTTGAGAACAAACGAACCAAGATTGCTAACCATGTGG-TTTTCTGCGACATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTCAATTCGCC-----A-------GTCGACGTGC--CGCGGATTATC---AAACTCACCATGTTGTGATAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTATAACGGTACCTCTGAGCTCCAGCTCGAGCGTATGAGCGTCTACTTCAATGAGGTATG---A--AGAAGCCACCGCCTACGCGTTCCCCTCCTCTTTA-CTTGCGGCTACT--GACGCTCT--TTAGGCTTCTGGAAACAAGTATGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGATGCCGTCCGCGCTGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTTC Dialonectria_sp_GJS091197 GACGCGTC---------CGTGATC-AGGAGCCCCTGATT-CTACCCCGCCGAAGC-ATTCCA-CTT-CACGTCGGGCCAAATC---GCAGCTTCGG-ACTCA--GACACGATGTGATGCTCTG--------GGGAACAATGATTGCTGACCATGTGG-TTTTCCACGACATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT-AACTCGTT-----G-------GTTGTCGTGC--CGCGAAATGTC---GAACTCACCATGTTATGATAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACTATCTCTGGCGAGCATGGCCTCGATAGCAATGGCGTCTACAATGGTACCTCTGAGCTTCAGCTCGAGCGTATGAGCGTCTACTTCAACGAGGTATG--------GAGCCACCGTTTACACGCGTTTGCCCTCCTTC-TTTTCAGCTACT--GACACCTT--GTAGGCCTCCGGCAACAAATATGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGCGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTTC Microcera_coccophila_GJS9850 AACGCGTT---------CCTGATC-GCGAGCCCCTGATT-TTACCCCACCGAAGT-ATTCGA-CCT-CAGGTCGTGCCACACT---GAAAGCTTCT-ACACA--TGCACGAAGCGATACTT----------GGGAACG--TATGGCTAACGACTTTG--TTTCTCCGA-ACAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTTAACTCACC-----ATGTTCCTGCCAACACGT--TACGAGCGGGG---AAACTCACGATGCTTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAATGGCACTTCCGAGCTCCAGCTCGAGCGGATGAGCGTTTACTTCAACGAGGTACG---T--GGATATAGCCTCCCTTTTGTCGGTT----------GTTTTGGCCACT--GACACGTT--GCAGGCATCTGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCTGACAACTTC Microcera_coccophila_MF241482 AACGCGTT---------CTTGATC-GTGAGCCCCTGATT-TTACCCCGCCGAAAC-ATTCGA-CCT-CATATCGAGCCACATG---GGAGCTTCC--ACAAA--TGCACGAAGTGATACTT----------GGGAAT---GATGGCTAACCGTGTTG-TTTTCTCTGA-ATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT-TACTCACC--------TTGCTGTCTGTACGC--TACGAGTGCGG---GAACTCACGATATTTCGATAGGGTAACCAAGTTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGCACCTCTGAGCTTCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTATG---C--AAAAAAATTCCATCTCGCAAAGTG-----------TGTTCGGCAGCT--GACACGTC--CTAGGCCTCTGGCAACAAGTATGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGCCAGCTCTTCCGTCCCGACAACTTC Microcera_larvarum_AR4580 AACGCGTT---------CTTGATC-GTGAGCCCCTGATT-CTACCCCGCCGAACC-ATTCGA-CCT-CATATCGAGCCACATC---GGAGCTTTC--ACAAA--TGCACGAAGGGATACTT----------GAGAATA--GATGGCTAACCGTGTTG-TTTTCTCTGA-ATAGGTTCACCTTCAGACCGGTCAGTGCGTAAGT-TACTCACC--------TTGCTGTCTGTACAC--TACGAGTGCGG---GAACTCACGATATTTCCATAGGGTAACCAAGTTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGCACCTCTGAGCTTCAGCTCGAGCGCATGAGCGTTTACTTCAACGAGGTATG---C--AAAAATATTTCACCCCACAAAGTG-----------TGTTCGGCAGCT--GACACGTC--CTAGGCCTCTGGCAACAAGTATGTCCCTCGCGCCGTCCTTGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGCCAGCTCTTCCGTCCCGACAACTTC Pseudocosmospora_eutypae_CH1101 ------------------------------CCCCTGATT-CTACCCCGCCGAAGC-ATTCCA-CCA-CACGTCGGGCC--ATC---GCAGCTTCTG-ACACA--GACACGATATAATGCTT----------GGGAACAATGATTGCTAACCATGTGGTTTTTCTGCGACATAGGTTCACCTCCAGACCGGCCAGTGCGTAAGT-AACTCACC-----AT-TCGAATTCGACGTGT--TGCCGATCAAC---AAACTCACCATATTGTGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACTATTTCTGGCGAGCATGGCCTCGACAGCAATGGTGTCTACAATGGCACTTCTGAGCTCCAGCTCGAGCGTATGAGCGTCTACTTCAACGAGGTACG---T--AGAGTTCTTTTTTCTCACGATTTTTTTAGTGCTC-CGTTCGGCTACT--GACGTGCC--ATAGGCCTCTGGCAACAAGTATGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCTGTCCGTGCCGGTCCTTTCGGTCAGCTCTT---------------- Pseudocosmospora_eutypellae_AR4562 GACGCGTT---------TCTGAT--CAGAGCCCCTGATT-CTACCCCGCCGAAGC-ATTCCA-CCA-CACAACGGGTGATATC---GCAGCTTCAGGACATT--GGCAAAATATGATGCAT----------TTGGACAACGATTGCTAACCATATGATTTTTCCGGGATACAGGTTCACCTTCAGACCGGTCAGTGCGTAAGT-AACTCGCT-----G-------TTCGACGTGT--CGTCCGTCCGC---AAACTCACATTGTTGTGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACTATCTCTGGCGAGCACGGTCTCGACAGCAACGGCGTCTACAATGGCACCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTACG---C--GAAATTTACCTTATTCGCGCTT-------------CCCTCGGTTACT--GACACGTT-CATAGGCCTCTGGCAACAAGTATGTCCCTCGCGCCGTTCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTTC Pseudocosmospora_joca_AR4779 GACGCGTC---------CCTGATC-AGAGGCCCCTGATT-CTACCCCGCCGAAGC-ATTCCA-CCA-CACGTCGGGCCAGATC---CCACCTGCAG-ACACA--AGCACGATATCATACTC----------AGGAACAATGATTGCTAAC-ATTTGG-TTTTTTGCGACTTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT-AACTCACC-----T-------TTCAACGTGT--TGTCGATCCGC---AAACTCACGATGCTGTGTTAGGGTAACCAAATTGGTGCCGCTTTCTGGCAGACCATTTCTGGCGAGCACGGCCTCGACAGCAACGGTGTTTACAATGGCACTTCTGAGCTTCAGCTTGAGCGCATGAGCGTCTACTTCAACGAGGTACG---TTGAGAAAAGAACTTGTTCGCGCTT-------------CTCTGGGTCACT--GACACGCT--CTAGGCCTCTGGAAACAAGTATGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCTTTCGGTCAGCTTTTCCGTCCCGACAACTTC Pseudocosmospora_rogersonii_GJS9056 GACGCGTT---------TCTGAT--CAGAGCCCCTGATT-CTACCCCGCCGAAGC-ATTCCA-CCA-CACAACGGGTGATATC---GCAGCTTCACGATATT--GGCACAATATGATCCGT----------TTGGACAACGATTGCTAACCATATAATTTTTCCGTGATATAGGTTCACCTTCAGACCGGTCAGTGCGTAAGT-AGCTCGCC-----G-------TTCGACGTGT--CGTCCGTCCAT---AAACTCACATTGTTGTGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACAATGGCACCTCTGAGCTCCAGCTCGAGCGTATGAGCGTCTACTTCAACGAGGTACG---C--GAAATGTACCCTATTCGCGCTT-------------CCCTCGGTTACT--GACACGTT-TATAGGCCTCTGGCAACAAGTATGTCCCTCGCGCCGTTCTCGTCGATCTTGAGCCCGGTACAATGGACGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTTC Pseudocosmospora_vilior_PC1246 GACGCGTC---------CTTGCT--CAGAGCCCCTGATT-CTACCCCGCCGAAGC-ATTCCA-CCACCATGTCGGGCCATATT---GCAGCTTCAG-ACACA--GTCACGACATAATTGTT----------GGGAACGACGATTGCTAACCATGTG--CCTTCTTCGATACAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT-ACTTCACC-----AT------TCGAACGTGTGGCGCCGATCCAC---GAACTCACGTTCTTGTATTAGGGTAACCAAATTGGTGCTGCTTTCTGGCAAACCATTTCTGGCGAGCACGGCCTTGACAGCAATGGTGTCTACAATGGCACCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTGCG---T--ACAATCTCTCTT-CTATCGCGC-------------TCCTCGGCAACT--GACACGTT--GTAGGCCTCTGGCAACAAGTATGTCCCTCGCGCCGTCCTCGTCGATTTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTC Pseudonectria_pachysandricola_AR4592 GACGCGTCTTGTACCAGCTTGGGGGAGGAGCCCCTGATC-CTACCCCGCCGAAACAAATCCA-CCA-CCCGATGCACGACTTGAC-GCGATTCCGG-GTACA--GACTGGATATTTTGATG----------GAACGAGTTGGCTAACGATTTCTTCC-TTTTTGCTATTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT-GCTATCCTCTCCGATGTTGGCTTCACTATGC--GGGGGATTTGC--------TAACATCGTCCGACAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAACGGTGTCTACAATGGCACCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTACG---T--AGAACGCTACAGCCGAGTTCGCAAGCACCAAAAGACGTGAAGCTGACAGGCTACAAC--ATAGGCCTCCGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTC ; END; [ The following blocks are output data for analysis step 11182 ] BEGIN TREES; TITLE tub_overview_con; LINK TAXA = TaxaForAnalysisStep11182; TREE con_50_majrule = [&R] (Corallomycetella_repens_AR4547:0.227763,(Cosmospora_flavoviridis_IMI338173:0.037368,Cosmospora_obscura_MF241484:0.020357):0.044592,(Cosmospora_stegonsporii_AR4385:0.023922,Pseudonectria_pachysandricola_AR4592:0.549778):0.043907,((((Cosmospora_coccinea_AR2741:0.052869,Cosmospora_viridescens__CBS102433:0.02563):0.013101,(((Cosmospora_viliuscula_GJS09411:0.062402,Cosmospora_viliuscula_GJS86315:0.070247):0.035435,Cosmospora_viliuscula_GJS10247:0.12253):0.015971,Cosmospora_viliuscula_GJS83197:0.056481):0.018833):0.038352,((Microcera_larvarum_AR4580:0.034545,Microcera_coccophila_MF241482:0.008586):0.087502,Microcera_coccophila_GJS9850:0.136022):0.112134,(((Dialonectria_episphaeria_CH1001:0.041941,Dialonectria_sp_CH1014:0.026126):0.023797,Dialonectria_sp_GJS091197:0.04434):0.034317,Dialonectria_sp_CH1106:0.089533):0.071097):0.008484,(((Pseudocosmospora_eutypellae_AR4562:0.021232,Pseudocosmospora_rogersonii_GJS9056:0.02586):0.094981,Pseudocosmospora_vilior_PC1246:0.120641):0.013892,Pseudocosmospora_joca_AR4779:0.105354,Pseudocosmospora_eutypae_CH1101:0.066272):0.027006):0.018104); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr62282] END; BEGIN TREES; TITLE tub_overview_con; LINK TAXA = TaxaForAnalysisStep11182; TREE con_50_majrule = [&R] (Corallomycetella_repens_AR4547:0.227763,(Cosmospora_flavoviridis_IMI338173:0.037368,Cosmospora_obscura_MF241484:0.020357)1.00:0.044592,(Cosmospora_stegonsporii_AR4385:0.023922,Pseudonectria_pachysandricola_AR4592:0.549778)0.96:0.043907,((((Cosmospora_coccinea_AR2741:0.052869,Cosmospora_viridescens__CBS102433:0.02563)0.87:0.013101,(((Cosmospora_viliuscula_GJS09411:0.062402,Cosmospora_viliuscula_GJS86315:0.070247)1.00:0.035435,Cosmospora_viliuscula_GJS10247:0.12253)0.56:0.015971,Cosmospora_viliuscula_GJS83197:0.056481)0.98:0.018833)0.98:0.038352,((Microcera_larvarum_AR4580:0.034545,Microcera_coccophila_MF241482:0.008586)1.00:0.087502,Microcera_coccophila_GJS9850:0.136022)1.00:0.112134,(((Dialonectria_episphaeria_CH1001:0.041941,Dialonectria_sp_CH1014:0.026126)1.00:0.023797,Dialonectria_sp_GJS091197:0.04434)1.00:0.034317,Dialonectria_sp_CH1106:0.089533)1.00:0.071097)0.55:0.008484,(((Pseudocosmospora_eutypellae_AR4562:0.021232,Pseudocosmospora_rogersonii_GJS9056:0.02586)1.00:0.094981,Pseudocosmospora_vilior_PC1246:0.120641)0.57:0.013892,Pseudocosmospora_joca_AR4779:0.105354,Pseudocosmospora_eutypae_CH1101:0.066272)0.98:0.027006)0.88:0.018104); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr62281] END;