#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 16:54 GMT TreeBASE (cc) 1994-2008 Study reference: Passamaneck Y., & Martindale M. 2013. Evidence for a phototransduction cascade in an early brachiopod embryo. Integrative and Comparative Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S14096] [ The following blocks are input data for analysis step 11275 ] BEGIN TAXA; TITLE TaxaForAnalysisStep11275; DIMENSIONS NTAX=60; TAXLABELS Alloteuthis_subulata_Opsin Anolis_carolinensis_P_opsin Anopheles_gambiae_GPRop11 Anopheles_gambiae_GPRop12 Bos_taurus_RGR Branchiostoma_belcheri_Amphiop1 Branchiostoma_belcheri_Amphiop2 Branchiostoma_belcheri_Amphiop3 Branchiostoma_belcheri_Opsin4 Branchiostoma_belcheri_Opsin5 Ciona_intestinalis_Opsin1 Cynops_pyrrhogaster_SWS1 Danio_rerio_VAL_opsin Drosophila_melanogaster_Allatostatin Drosophila_melanogaster_Tachykinin_like_receptor Enteroctopus_dofleini_Opsin Gallus_gallus_Blue_Cone_opsin Geotria_australis_LWS Geotria_australis_RhA Geotria_australis_RhB Geotria_australis_SWS Geotria_australis_SWS2 Hemigrapsus_sanguineus_Rh1 Homo_sapiens_Encephalopsin Homo_sapiens_Melanopsin Homo_sapiens_NK_1_receptor Homo_sapiens_Peropsin Homo_sapiens_RGR Homo_sapiens_Rhodopsin Homo_sapiens_Somatostatin Latimeria_chalumnae_Rh1 Latimeria_chalumnae_Rh2 Limulus_polyphemus_Ocellus_opsin Loligo_forbesii_Opsin Mizuhopecten_yessoensis_Go_rhodopsin Mizuhopecten_yessoensis_Gq_rhodopsin Mus_musculus_Encephalopsin Mus_musculus_MLT Mus_musculus_Melanopsin Mus_musculus_Peropsin Mus_musculus_RGR Mus_musculus_Rhodopsin Oncorhynchus_nerka_LWS Petromyzon_marinus_Pineal_opsin Petromyzon_marinus_RhA Platynereis_dumerilii_C_opsin Platynereis_dumerilii_R_opsin Rana_catesbeiana_SWS1 Rattus_norvegicus_Blue_cone_opsin Schistosoma_mansoni_Opsin Sepia_officinalis_Opsin Takifugu_rubripes_TMT_opsin Terebratalia_transversa_C_opsin Terebratalia_transversa_Go_opsin1 Terebratalia_transversa_Go_opsin2 Terebratalia_transversa_R_opsin Todarodes_pacificus_Opsin Xenopus_laevis_Green_rod_opsin Xenopus_laevis_MLT Xenopus_laevis_Melanopsin ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16617] TITLE opsins; LINK TAXA = TaxaForAnalysisStep11275; DIMENSIONS NCHAR=536; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=X GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Alloteuthis_subulata_Opsin YYSLGI--FIAI-----------------------CGII-------GCAGNGIVI----YLF-TK-TKSLQ-TPANMFIINLAF--SDFTFS-----LVNGFPMMTISCFLK-HWVFGQAA-CKVYGLIGGIFGLTS---IMTMTMISIDRYNVIR--RP-------MSASKKMSH-RK--AF---IMIVFV-WIWSTIWAIGPIFGWGAYQLEGVLC-----------NCSFDY--------ITRDA--ST--RS-NIVCMYIFAFMFPIVV------------------------IFFCYFNI-VMSVSNHEKEMA---AA---------Q---A------G---A-----------------S---A---EMK----LAKISIVIVTQS------LLSWSPYA-IVALLAQ--FGP-----IE-W-------V---------T-PY---AAQLPVM------FAKASAIHNPMIYSV----SH----------------------------------------------PKFR Anolis_carolinensis_P_opsin --VAVL--MGLV------------------------VVL-------ATVVNGLVI----VVS-VR-YKRLR-SPLNYILVNLAV--ADLLVT-----SFGS-TISFANNIYG-FFVFGPTA-CEFEGFMVSLTGIVG---LWSLAILAFERYLVIC--KP---------VG-DFRF-QQRHAV---IGCAFT-WLWSLLWTLPPLFGWSSYIPEGLRT-----------SCGPNW--------YTGGN--DN--NS-YIMTLFVTCFITPLAM------------------------IIFSYANLLLTL---R----A---VA---------AQQKE------MATTQ-----------------Q---A---ERE----VTRMVVTMVMAF------LVCWLPYA-SFAMVVA--TNK-----DL-L-------I---------Q-PA---LASLPSY------FSKTATVYNPIIYVF----MN----------------------------------------------KQFR Anopheles_gambiae_GPRop11 --AAVT--LFFI------------------------GFF-------GFFLNIFVI----ALM-YK-DVQLW-TPMNIILFNLVC--SDFSVS-----IIGN-PLTLTSAISH-RWLYGKSI-CVAYGFFMSLLGIAS---ITTLTVLSYERFCLIS--RP-------FAAQ-NRSK-QG--AC---LAVLFI-WSYSFALTSPPLFGWGAYVNEAANI-----------SCSVNW--------ESQTA--NA--TS-YIIFLFIFGLILPLAV------------------------IIYSYINIVLEM---R----K---NS---------A---R------VGRVN-----------------R---A---ERR----VTSMVAVMIVAF------MVAWTPYA-IFALIEQ--FGP-----PE-L-------I---------G-PG---LAVLPAL------VAKSSICYNPIIYVG----MN----------------------------------------------TQFR Anopheles_gambiae_GPRop12 --SAVT--LFFI------------------------GFF-------GFFLNLFVI----ALM-CK-DMQLW-TPMNIILFNLVC--SDFSVS-----IIGN-PLTLTSAISH-RWIFGRTL-CVAYGFFMSLLGITS---ITTLTVLSYERYCLIS--RP-------FSSR-NLTR-RG--AF---LAIFFI-WGYSFALTSPPLFGWGAYVQEAANI-----------SCSVNW--------ESQTK--NA--TT-YIIFLFVFGLVVPLIV------------------------IVYSYTNIIVNM---R----E---NS---------A---R------VGRIN-----------------R---A---EQR----VTSMVAVMIVAF------MVAWTPYA-IFALIEQ--FGP-----PE-L-------I---------G-PG---LAVLPAL------VAKSSICYNPIIYVG----MN----------------------------------------------TQFR Bos_taurus_RGR ---------VLA-----------------------VGTVLLVEALSGLSLNILTI----LSF-CK-TPELR-TPSHLLVLSLAL--ADSGISLNA-LV------AATSSLLR-RWPYGSEG-CQAHGFQGFVTALAS---ICSSAAVAWGRYHHFC--------TRSRLDW------NT--AV---SLVFFV-WLSSAFWAALPLLGWGHYDYEPLGT-----------CCTLDY--------SRGDR--NF--TS-FLFTMAFFNFLLPLFI------------------------TV---------------------------------------------VSYR-----------------L---M---EQK----LGKTSRPPVNTVLPARTLLLGWGPYA-LLYLYAT--IAD-----AT-S-------I---------S-PK---LQMVPAL------IAKAVPTVNAMNYAL----GS----------------------------------------------EMVH Branchiostoma_belcheri_Amphiop1 ----AI--YITL-----------------------TGLI-------AFFGNVITI----TVFLTE-KEFRK-KQQNGFVLNLAI--ADLSVC-----VFAY-PSSAIAGYAG-RWVLGDVG-CTIYGFLCFTFALVS---MVTLCVISIYRYILIC--KP-------QYAH-LLTH-RR--TV---YVIIGT-WLYALVFTVPPLVGVKRYTYEPMQI-----------TCSLDW--------NVQHP--GE--KA-YIAAVLVIVYVLQVLI------------------------MCFCYFNIIFKSANLK----F---AA---------L---A------SEKTK-----------------K---D---TWK----TSVMCLTMVVSF------LIAWTPYA-VSSTWDI--LSA-----EDLP-------I------------I---ATILPSL------FAKSSCMMNPIIYAC----CN----------------------------------------------TKFR Branchiostoma_belcheri_Amphiop2 --IMGV--YLTI-----------------------VGLV-------ATVGNATVV----LMFIMKWRQLCR-KAPNLLVINLAA--ANLCIT-----IFGY-PFSASSGYAH-QWLFPDAI-CTLYGFSCFLLSMVS---MHTLCLISAHRYITIC--RP-------EHAS-KLTM-NR--TV---LAVIGT-WLYAIAVAVPPLFNIARYTYEPSGL-----------SCTIDF--------RVTTV--AD--LV-YLGSLIVLCYVIHVAV------------------------MATCYFKIIRKFSRHR----F---RQ---------V---R------DIRTS-----------------S---F---EMG----VTMRCILMTLFY------LLSWTPYT-AVCIWTM--VGP-----PP-P-------V------------V---VSMAAAL------IAKTHCAFNPILYAF----MS----------------------------------------------EVYR Branchiostoma_belcheri_Amphiop3 --IVGL--YLFV-----------------------IGII-------GTIENGITL----ATF-SK-FRSLR-SPTTMLLVHLAI--ADLGIC-----IFGY-PFSGASSLRS-HWLFGGVG-CQWYGFNGMFFGMAN---IGLLTCVAVDRYLVIC--RH-------DLVD-KVNY-NT--YG---VMAALG-WLFAAFWAALPLVGWAEYALEPSGT-----------ACTINF--------QKNDS--LY--IS-YVTSCFVLGFVVPLAV------------------------MAFCYWQ----ASCFV----S---KV---------L---K------GDIAA-----------------N---V---DWEYQNHFSKMCLAMVAAF------VVAWTPYS-VLFLFAA--FWN-----PA-D-------I---------P-AW---LTLLPPL------IAKSSALYNPIIYII----AN----------------------------------------------RRFR Branchiostoma_belcheri_Opsin4 --IATG--LALI------------------------GLV-------GSMNNFVVI----LLI-GC-HRQLR-TPFNLLLLNVSV--ADLLVS-----VCGN-TLSFASAVQH-RWLWGRPG-CVWYGFANSLFGIVS---LVTLSALAFERYCVVV--RS-------SEM---LTYKSS--LG---M-IAFI-WMYSLLWTSLPLLGWSSYQFEGHSV-----------GCSVNW--------VKHNV--NN--VS-YIITLMVTCFFVPMVV------------------------VCWSYACIWRTV---R----M---SA------EMKS---E------FGNPQ-----------------N---T---GRL----VTTMVVVMIVCF------LVCWTPYT-VMALIVT--FGA-----DH-L-------V---------T-PT---ASVIPSL------VAKSSTAYNPIIYVL----MN----------------------------------------------NQFR Branchiostoma_belcheri_Opsin5 --VAGV--IAII------------------------GVV-------GFVSNGAVV----VLF-LK-FPQLR-TPFNLLLLNMAV--ADLLVS-----VCGN-TLSFASAVRH-RWLWGRPG-CVWYGFANHLFGLVS---LISLAVISFLRYRMVV--KPKGPG---SSY---LTY-TK--VG---LAILFI-YLYCLLWTTLPIAGWSSYQLEGPKI-----------GCSVAW--------EEHSW--SN--TS-YIVVLFITCLFAPLLI------------------------IVYSYYRLWHKV---K----Q---GS------RNLP---A------MRKSS-----------------Q---K---EQK----IAMMVIVMITCF------MVCWLPYG-AMALVVT--FGG-----ER-L-------I---------S-HT---AAVVPSL------LAKSSTCYNPVVYFA----MN----------------------------------------------SQFR Ciona_intestinalis_Opsin1 --LCVY--MTFV------------------------FLL-------SCSLNILVI----VAT-LK-NKVLR-QPLNYIIVNLAV--VDLLSG-----FVGG-FISIAANGAG-YFFWGKTM-CQIEGYFVSNFGVTG---LLSIAVMAFERYFVIC--KP---------FG-PVRF-EEKHSI---FGIVIT-WVWSMFWNTPPLIFWDGYDTEGLGT-----------SCAPNW--------FVKEK--RE--RL-FIILYFVFCFVIPLAV------------------------IMICYGKLILTL---R----Q---IA---------K-ESS------LSGGT-----------------S---P---EGE----VTKMVVVMVTAF------VFCWLPYA-AFAMYNV--VNP-----EA-Q-------I---------D-YA---LGAAPAF------FAKTATIYNPLIYIG----LN----------------------------------------------RQFR Cynops_pyrrhogaster_SWS1 --QTAF--MGFV------------------------FFV-------GTPLNAIVL----IVT-VK-YKKLR-QPLNYILVNVSL--AGFTFC-----IFSV-FSVFVASSQG-YFIFGKFM-CEMEAFLGSVSGLVT---GWSLAFLAIERYIVIC--KP---------MG-NFRF-ASKHAL---MIVLTT-WVIGFSVSIGPLVGWSRYIPEGLQC-----------SCGPDW--------YTVGTKYNS--ET-YTWFLFIFCFIIPLSL------------------------ICFCYSQLLGAL---R----A---VA---------AQQQE------SATTQ-----------------K---A---ERE----VTRMVIVMVASF------CVCYVPYA-AMAMYMV--NNR-----NH-G-------L---------D-LR---LVTIPAF------FSKSACVYNPIIYSF----MN----------------------------------------------KQFR Danio_rerio_VAL_opsin --LAAL--MFVV------------------------TAL-------SLSENFTVM----LVT-FR-FQQLR-QPLNYIIVNLSL--ADFLVS-----LTGG-SISFLTNYHG-YFFLGKWA-CVLEGFAVTFFGIVA---LWSLAVLAFERFFVIC--RP---------LG-NIRL-RGKHAA---LGLVFV-WSFSFIWTVPPVLGWSSYTVSRIGT-----------TCEPNW--------YSGNF--HD--HT-FIITLFSTCFIFPLGV------------------------IIVCYCKLIRKL---R----K---VS---------NTHGR------LGNAR-----------------K---P---ERQ----VTRMVVVMIVAF------MVAWTPYA-AFSIIIT--AHP-----SM-H-------V---------D-PR---LAAIPAF------VAKTAAVYNPIIYVF----MN----------------------------------------------KQFR Drosophila_melanogaster_Allatostatin --IVPV--FFGI-----------------------IGFA-------GLLGNGLVI----LVV-VA-NQQMR-STTNLLIINLAV--SDILFV-----IFCV-PFTATDYVLP-EWPFGNVW-CKFVQYMIVVTCHCS---VYTLVLMSFDRFLAVV--HP-------VTSMSLRTE-RN--AT---LAIMCA-WITIVTTAIPVAL-SHS-----VR-IYQYHGNAGTA-CVFSTEE---EI--------WS--LVGFQVSFFLSSYVAPLTL------------------------ICFLYMGMLARLWKSA----PGCKPS---------A---E------S---R-----------------K---G---KRR----VTRMVVVVVLAF------AICWLPIH-VILVLKA--LNL-----YG-G-------S------------H---LSVI--IQIISHVVAYTNSCINPILYAF----LS----------------------------------------------DNFR Drosophila_melanogaster_Tachykinin_like_receptor --IWAI--IFGL-----------------------MMFV-------AIAGNGIVL----WIV-TG-HRSMR-TVTNYFLLNLSI--ADLLMS-----SLNC-VFNFIFMLNS-DWPFGSIY-CTINNFVANVTVSTS---VFTLVAISFDRYIAIV--HP-------L---KRRTS-RR--KV---RIILVLIWALSCVLSAPCLL-YSS-----IMTKHYYNGKSRTV-CFMMWPDGRYPTS----M--AD--YA-YNLIILVLTYGIPMIV------------------------MLICYSLMGRVLWGSR----S---IGENTDRQ---M---E------S---M-----------------K---S---KRK----VVRMFIAIVSIF------AICWLPYH-LFFIYAY--HNN-----QV-A-------STKYVQHM-----Y---LGFY--W------LAMSNAMVNPLIYYW----MN----------------------------------------------KRFR Enteroctopus_dofleini_Opsin YYSVGI--FIGV-----------------------VGII-------GILGNGVVI----YLF-SK-TKSLQ-TPANMFIINLAM--SDLSFS-----AINGFPLKTISAFMK-KWIFGKVA-CQLYGLLGGIFGFMS---INTMAMISIDRYNVIG--RP-------MAASKKMSH-RR--AF---LMIIFV-WMWSIVWSVGPVFNWGAYVPEGILT-----------SCSFDY--------LSTDP--ST--RS-FILCMYFCGFMLPIII------------------------IAFCYFNI-VMSVSNHEKEMA---AA---------Q---A------G---A-----------------S---A---EMK----LAKISMVIITQF------MLSWSPYA-IIALLAQ--FGP-----AE-W-------V---------T-PY---AAELPVL------FAKASAIHNPIVYSV----SH----------------------------------------------PKFR Gallus_gallus_Blue_Cone_opsin --MAAF--MFLL------------------------IAL-------GVPINTLTI----FCT-AR-FRKLR-SHLNYILVNLAL--ANLLVI-----LVGS-TTACYSFSQM-YFALGPTA-CKIEGFAATLGGMVS---LWSLAVVAFERFLVIC--KP---------LG-NFTF-RGSHAV---LGCVAT-WVLGFVASAPPLFGWSRYIPEGLQC-----------SCGPDW--------YTTDNKWHN--ES-YVLFLFTFCFGVPLAI------------------------IVFSYGRLLITL---R----A---VA---------RQQEQ------SATTQ-----------------K---A---DRE----VTKMVVVMVLGF------LVCWAPYT-AFALWVV--THR-----GR-S-------F---------E-VG---LASIPSV------FSKSSTVYNPVIYVL----MN----------------------------------------------KQFR Geotria_australis_LWS --LTSFW-MIIV------------------------VIL-------SLFTNGLVL----VAT-LK-FKKLR-HPLNWILVNLAI--ADIGET-----IFAS-TVSVVNQIFG-YFILGHPL-CVFEGFTVSVCGITA---LWSLAIISFERWMVVC--KP---------FG-NLKF-DGKVAI---VLIIFS-WAWSAGWCAPPIFGWSRYWPHGLKT-----------SCGPDV--------FSGST--DPGVQS-YMVVLMITCCFIPLAL------------------------IIICYLQVWLAI---H----T---VA---------QQQKE------SETTQ-----------------K---A---ERD----VSRMVVVMIFAY------IFCWGPYT-FFACFAA--ANP-----GY-A-------F---------H-PL---AAALPAY------FAKSATIYNPIIYVF----MN----------------------------------------------RQFR Geotria_australis_RhA --LAAY--MFFL------------------------ILV-------GFPVNFLTL----FVT-VQ-HKKLR-TPLNYILLNLAV--SNLFMI-----LFGF-TTTMYTSMNG-YFVFGPTM-CSIEGFFATLGGEVS---LWSLVVLAIERYIVIC--KP---------MG-NFRF-GNTHAI---MGVALT-WVMALSCAAPPLLGWSRYLPEGMQC-----------SCGPDY--------YTMNPTYNN--ES-FVIYMFIVHFTIPFVI------------------------IFFSYGRLLCTV---K----E---AA---------AAQQE------SASTQ-----------------K---A---EKE----VTRMVVLMVVGF------LVCWVPYA-SVAFYIF--TNQ-----GS-D-------F---------G-AT---FMTLPAF------FAKSSALYNPVIYIL----MN----------------------------------------------KQFR Geotria_australis_RhB --ISAY--VFTL------------------------ILI-------GFPVNFMTL----FVT-FK-LKKLR-QPLNFILVNLCV--ADLLMI-----MFGF-TTTFYTAMNG-YFVFGPTG-CNIEGFFATLGGEVS---LWSLVMLAIERYIVVC--KP---------MG-NFRF-ATTHAA---LGVVFT-WVMASACAVPPLVGWSRYIPEGMQC-----------SCGPDY--------YTLNPKYYN--ES-YVIYLFLVHFLLPVTI------------------------IFFTYGRLICTV---K----E---AA---------AQQQE------SASTQ-----------------K---A---ERE----VTRMVIIMVVGF------LVCWVPYA-SFAFYLF--MNK-----GI-L-------F---------S-AT---AMTVPAF------FSKSSVLYNPIIYVL----LN----------------------------------------------KQFR Geotria_australis_SWS --QAAF--MGFV------------------------FIC-------GTPLNAIVL----VVT-IK-YKKLR-QPLNYILVNISA--AGLVFC-----LFSI-STVFVASMQG-YFFLGPTI-CALEAFFGSLAGLVT---GWSLAFLAAERYIVIC--KP---------FG-NFRF-GSKHAL---VAVGLT-WMLGLSVALPPFFGWSRYIPEGLQC-----------SCGPDW--------YTVGTKYKS--EY-YTYFLFVFCFVVPLSI------------------------IIFSYGSLLGTL---R----A---VA---------AQQQE------SASTQ-----------------K---A---ERE----VSRMVIMMVASF------CTCYVPYA-ALAVYMV--TNR-----DH-N-------I---------D-LR---FVTVPAF------FSKASCVYNPLIYSF----MN----------------------------------------------KQFR Geotria_australis_SWS2 --MSAF--MLFL------------------------VLA-------GFPLNFLTV----FVT-IK-YKKLR-SHLNYILVNLAI--ANLIVV-----CCGS-TLAFYSFMHK-YFILGPLF-CKMEGFTATLGGMLS---LWSLAVLAFERCLVIC--KP---------FG-NIAF-RGTHAL---IRCGFA-WAAAIAASTPPLFGWSRYIPEGLQC-----------SCGPDW--------YTTNNKYNN--ES-YVMFLFIFCFGTPFTI------------------------IIVSYSKLILTL---R----A---AA---------AQQQE------SASTQ-----------------K---A---EKE----VSRMVVIMVGGF------LVCWLPYA-SLALWIV--FNR-----GS-P-------F---------D-LR---LATIPSV------FSKASTVYNPVIYIF----LN----------------------------------------------KQFR Hemigrapsus_sanguineus_Rh1 HYLLGV--VYLF-----------------------LGVI-------SIAGNGLVI----YLY-MK-SQALK-TPANMLIVNLAL--SDLIML-----TTNF-PPFCYNCFSGGRWMFSGTY-CEIYAALGAITGVCS---IWTLCMISFDRYNIIC--NG-------FNGP-KLTQ-GK--AT---FMCGLA-WVISVGWSLPPFFGWGSYTLEGILD-----------SCSYDY--------FTRDM--NT--IT-YNICIFIFDFFLPASV------------------------IVFSYVFI-VKAIFAHEAAMR---AE---------A---E------T---Q-----------------R---A---EIR----IAKTALVNVSLW------FICWTPYA-AITIQGL--LGN-----AE-G-------I---------T-PL---LTTLPAL------LAKSCSCYNPFVYAI----SH----------------------------------------------PKFR Homo_sapiens_Encephalopsin --LALL--LGSI------------------------GLL-------GVGNNLLVL----VLY-YK-FQRLR-TPTHLLLVNISL--SDLLVS-----LFGV-TFTFVSCLRN-GWVWDTVG-CVWDGFSGSLFGIVS---IATLTVLAYERYIRVVHARV-------INFS-------W--AW---RAITYI-WLYSLAWAGAPLLGWNRYILDVHGL-----------GCTVDW--------KSKDA--ND--SS-FVLFLFLGCLVVPLGV------------------------IAHCYGHILYSI---R----M---LR---------C---V------EDLVI-----------------K---ILKYEKK----LAKMCFLMIFTF------LVCWMPYI-VICFLVV--NGH-----GH-L-------V---------T-PT---ISIVSYL------FAKSNTVYNPVIYVF----MI----------------------------------------------RKFR Homo_sapiens_Melanopsin HYTLGT--VILL-----------------------VGLT-------GMLGNLTVI----YTF-CR-SRSLR-TPANMFIINLAV--SDFLMS-----FTQA-PVFFTSSLYK-QWLFGETG-CEFYAFCGALFGISS---MITLTAIALDRYLVIT--RP-------LATFGVASK-RR--AA---FVLLGV-WLYALAWSLPPFFGWSAYVPEGLLT-----------SCSWDY--------MSFTP--AV--RA-YTMLLCCFVFFLPLLI------------------------IIYCYIFI-FRAIRETGRALQ---TQ---------R---Q------R---L-----------------Q---S---ECK----MAKIMLLVILLF------VLSWAPYS-AVALVAF--AGY-----AH-V-------L---------T-PY---MSSVPAV------IAKASAIHNPIIYAI----TH----------------------------------------------PKYR Homo_sapiens_NK_1_receptor --LWAA--AYTV-----------------------IVVT-------SVVGNVVVM----WII-LA-HKRMR-TVTNYFLVNLAF--AEASMA-----AFNT-VVNFTYAVHN-EWYYGLFY-CKFHNFFPIAAVFAS---IYSMTAVAFDRYMAII--HP-------L---QPRLS-AT--AT---KVVICVIWVLALLLAFPQGY-YST-----TETMP-----SRVV-CMIEWPE--HPNK----I--YE--KV-YHICVTVLIYFLPLLV------------------------IGYAYTVVGITLWASE----I---PGDSSDRY---H---E------Q---V-----------------S---A---KRK----VVKMMIVVVCTF------AICWLPFH-IFFLLPY--INP-----DL-Y-------LKKFIQQV-----Y---LAIM--W------LAMSSTMYNPIIYCC----LN----------------------------------------------DRFR Homo_sapiens_Peropsin --IVAT--YLIM-----------------------AGMI-------SIISNIIVL----GIF-IK-YKELR-TPTNAIIINLAV--TDIGVS-----SIGY-PMSAASDLYG-SWKFGYAG-CQVYAGLNIFFGMAS---IGLLTVVAVDRYLTIC--LP-------DVGR-RMTT-NT--YI---GLILGA-WINGLFWALMPIIGWASYAPDPTGA-----------TCTINW--------RKNDR--SF--VS-YTMTVIAINFIVPLTV------------------------MFYCYYH----VTLSI----K---HH---------T---T------SDCTL-----------------N---R---DWSDQIDVTKMSVIMICMF------LVAWSPYS-IVCLWAS--FGD-----PK-K-------I---------P-PP---MAIIAPL------FAKSSTFYNPCIYVV----AN----------------------------------------------KKFR Homo_sapiens_RGR ---------VLA-----------------------VGMVLLVEALSGLSLNTLTI----FSF-CK-TPELR-TPCHLLVLSLAL--ADSGISLNA-LV------AATSSLLR-RWPYGSDG-CQAHGFQGFVTALAS---ICSSAAIAWGRYHHYC--------TRSQLAW------NS--AV---SLVLFV-WLSSAFWAALPLLGWGHYDYEPLGT-----------CCTLDY--------SKGDR--NF--TS-FLFTMSFFNFAMPLFI------------------------TI---------------------------------------------TSYS-----------------L---M---EQK----LGKSGHLQVNTTLPARTLLLGWGPYA-ILYLYAV--IAD-----VT-S-------I---------S-PK---LQMVPAL------IAKMVPTINAINYAL----GN----------------------------------------------EMVC Homo_sapiens_Rhodopsin --LAAY--MFLL------------------------IVL-------GFPINFLTL----YVT-VQ-HKKLR-TPLNYILLNLAV--ADLFMV-----LGGF-TSTLYTSLHG-YFVFGPTG-CNLEGFFATLGGEIA---LWSLVVLAIERYVVVC--KP---------MS-NFRF-GENHAI---MGVAFT-WVMALACAAPPLAGWSRYIPEGLQC-----------SCGIDY--------YTLKPEVNN--ES-FVIYMFVVHFTIPMII------------------------IFFCYGQLVFTV---K----E---AA---------AQQQE------SATTQ-----------------K---A---EKE----VTRMVIIMVIAF------LICWVPYA-SVAFYIF--THQ-----GS-N-------F---------G-PI---FMTIPAF------FAKSAAIYNPVIYIM----MN----------------------------------------------KQFR Homo_sapiens_Somatostatin --LVPV--LYLL-----------------------VCAA-------GLGGNTLVI----YVV-LR-FAKMK-TVTNIYILNLAV--ADVLY------MLGL-PFLATQNAAS-FWPFGPVL-CRLVMTLDGVNQFTS---VFCLTVMSVDRYLAVV--HP-------LSSARWRRP-RV--AK---LASAAA-WVLSLCMSLPLLV-FAD-----VQ--------EGGT-CNASWPE---PVG----L--WG--AV-FIIYTAVLGFFAPLLV------------------------ICLCYLLIVVKV--RA----AGVRVG---------C---V------R---R-----------------R---S---ERK----VTRMVLVVVLVF------AGCWLPFFTVNIVNLA--VALPQEPASA-G-------L------------Y---FFVV--I------LSYANSCANPVLYGF----LS----------------------------------------------DNFR Latimeria_chalumnae_Rh1 --LCAY--MFLL------------------------IIL-------GFPINFLTL----LVT-FK-HKKLR-QPLNYILVNLAV--ASLFMV-----VFGF-TVTFYSSLNG-YFVLGPMG-CAMEGFFATLGGQVA---LWSLVVLAIERYIVVC--KP---------MG-NFRF-ASSHAI---MGIAFT-WIMALACAAPPLVGWSRYIPEGLQC-----------SCGPDY--------YTLNPDFHN--ES-YVMYLFLVHFLLPIII------------------------IFFTYGRLICKV---K----E---AA---------AQQQE------SASTQ-----------------K---A---EKE----VTRMVILMVIGF------LTAWVPYA-SAAFWIF--CNR-----GA-E-------F---------T-AT---LMTVPAF------FSKSSCLFNPIIYVL----LN----------------------------------------------KQFR Latimeria_chalumnae_Rh2 --LAAY--MFFL------------------------ILV-------GFPINFLTL----FVT-IQ-HKKLR-TPLNYILLDLAV--ADLCMV-----FGGF-FVTMYSSMNG-YFVLGPTG-CNIEGFFATLGGQVA---LWALVVLAIERYVVVC--KP---------MS-NFRF-GENHAI---MGVIFT-WIMALSCAVPPLFGWSRYIPEGMQS-----------SCGVDY--------YTLKPEVNN--ES-FVIYMFVVHFTIPLIV------------------------IFFCYGRLVCTV---K----D---AA---------AQQQE------SATTQ-----------------K---A---EKE----VTRMVIVMVISF------LVCWVPYA-SVAAYIF--FNQ-----GS-E-------F---------G-PV---FMTAPSF------FAKSASFYNPVIYIL----LN----------------------------------------------KQFR Limulus_polyphemus_Ocellus_opsin YSILGV--AMII-----------------------LGII-------CVLGNGMVI----YLM-MT-TKSLR-TPTNLLVVNLAF--SDFCMM-----AFMM-PTMASNCFAE-TWILGPFM-CEVYGMAGSLFGCAS---IWSMVMITLDRYNVIV--RG-------MAAA-PLTH-KK--AT---LLLLFV-WIWSGGWTILPFFGWSRYVPEGNLT-----------SCTVDY--------LTKDW--SS--AS-YVIIYGLAVYFLPLIT------------------------MIYCYFFI-VHAVAEHEKQLR---ED---------Q---Q------K---Q-----------------S---A---ECR----LAKVAMMTVGLW------FMAWTPYL-IIAWAGV--FSS-----GT-R-------L---------T-PL---ATIWGSV------FAKANSCYNPIVYGI----SH----------------------------------------------PRYK Loligo_forbesii_Opsin YYSLGI--FIAI-----------------------CGII-------GCVGNGVVI----YLF-TK-TKSLQ-TPANMFIINLAF--SDFTFS-----LVNGFPLMTISCFMK-YWVFGNAA-CKVYGLIGGIFGLMS---IMTMTMISIDRYNVIG--RP-------MSASKKMSH-RK--AF---IMIIFV-WIWSTIWAIGPIFGWGAYTLEGVLC-----------NCSFDY--------ITRDT--TT--RS-NILCMYIFAFMCPIVV------------------------IFFCYFNI-VMSVSNHEKEMA---AA---------Q---A------G---A-----------------N---A---EMK----LAKISIVIVTQF------LLSWSPYA-VVALLAQ--FGP-----IE-W-------V---------T-PY---AAQLPVM------FAKASAIHNPMIYSV----SH----------------------------------------------PKFR Mizuhopecten_yessoensis_Go_rhodopsin --IIGI--FISI-----------------------CCII-------GVLGNLLII----IVF-AK-RRSVR-RPINFFVLNLAV--SDLIVA-----LLGY-PMTAASAFSN-RWIFDNIG-CKIYAFLCFNSGVIS---IMTHAALSFCRYIIIC--QY-------GYRK-KITQ-TT--VL---RTLFSI-WSFAMFWTLSPLFGWSSYVIEVVPV-----------SCSVNW--------YGHGL--GD--VS-YTISVIVAVYVFPLSI------------------------IVFSYGMILQEKVCKD----S---RK---------N---G------IRAQQ-----------------R---Y---EQR----VTFISFLMMAAF------MVAWTPYA-IMSALAIGSFNV-----EN-S-------F------------A---A--LPTL------FAKASCAYNPFIYAF----TN----------------------------------------------ANFR Mizuhopecten_yessoensis_Gq_rhodopsin HYIIGV--YITI-----------------------VGLL-------GIMGNTTVV----YIF-SN-TKSLR-SPSNLFVVNLAV--SDLIFS-----AVNGFPLLTVSSFHQ-KWIFGSLF-CQLYGFVGGVFGLMS---INTLTAISIDRYVVIT--KP-------LQASQTMTR-RK--VH---LMIVIV-WVLSILLSIPPFFGWGAYIPEGFQT-----------SCTFDY--------LTKTA--RT--RT-YIVVLYLFGFLIPLII------------------------IGVCYVLI-IRGVRRHDQKML---TN---------N---K------R---A-----------------R---S---ELR----ISKIAMTVTCLF------IISWSPYA-IIALIAQ--FGP-----AH-W-------I---------T-PL---VSELPMM------LAKSSSMHNPVVYAL----SH----------------------------------------------PKFR Mus_musculus_Encephalopsin --LALL--LGCL------------------------ALL-------GVGGNLLVL----LLY-SK-FPRLR-TPTHLFLVNLSL--GDLLVS-----LFGV-TFTFASCLRN-GWVWDAVG-CAWDGFSGSLFGFVS---ITTLTVLAYERYIRVVHARV-------INFS-------W--AW---RAITYI-WLYSLAWAGAPLLGWNRYILDIHGL-----------GCTVDW--------RSKDA--ND--SS-FVLFLFLGCLVVPVGI------------------------IAHCYGHILYSV---R----M---LR---------C---V------EDLVI-----------------K---MLRYEKK----VAKMCFLMAFVF------LTCWMPYI-VTRFLVV--NGY-----GH-L-------V---------T-PT---VSIVSYL------FAKSSTVYNPVIYIF----MN----------------------------------------------RKFR Mus_musculus_MLT --FMFC--AMVI-----------------------TVVV-------DLIGNSMVI----LAV-TK-NKKLR-NSGNIFVASLSV--ADMLVA-----IYPY-PLMLYAMSVG-GWDLSQLQ-CQMVGLVTGLSVVGS---IFNITAIAINRYCYIC--HS-------LQYKRIFSL-RN--TC---IYLVVT-WVMTVLAVLPNMY-IGT-----IE----Y--DPRTYTCIFNY------------V--NN--PA-FTVTIVCIHFVLPLII------------------------VGYCYTKIWIKVLAAR----D---PA---------G---QNPDNQFA-------------------------E---VRN----FLTMFVIFLL-F------AVCWCPVN-VLTVLVA--VIP-----KE-MAGKIPNWL------------Y---LAAY--C------IAYFNSCLNAIIYGI----LN----------------------------------------------ESFR Mus_musculus_Melanopsin HYTLGT--VILL-----------------------VGLT-------GMLGNLTVI----YTF-CR-NRGLR-TPANMFIINLAV--SDFLMS-----VTQA-PVFFASSLYK-KWLFGETG-CEFYAFCGAVFGITS---MITLTAIAMDRYLVIT--RP-------LATIGRGSK-RR--TA---LVLLGV-WLYALAWSLPPFFGWSAYVPEGLLT-----------SCSWDY--------MTFTP--QV--RA-YTMLLFCFVFFLPLLI------------------------IIFCYIFI-FRAIRETGRACE---GQ---------W---Q------R---L-----------------Q---S---EWK----MAKVALIVILLF------VLSWAPYS-TVALVAF--AGY-----SH-I-------L---------T-PY---MSSVPAV------IAKASAIHNPIIYAI----TH----------------------------------------------PKYR Mus_musculus_Peropsin --VIAA--YLIV-----------------------AGIT-------SILSNVVVL----GIF-IK-YKELR-TPTNAVIINLAF--TDIGVS-----SIGY-PMSAASDLHG-SWKFGHAG-CQIYAGLNIFFGMVS---IGLLTVVAMDRYLTIS--CP-------DVGR-RMTT-NT--YL---SMILGA-WINGLFWALMPIIGWASYAPDPTGA-----------TCTINW--------RNNDT--SF--VS-YTMMVIVVNFIVPLTV------------------------MFYCYYH----VSRSL----R---LY---------A---A------SDCTL-----------------H---R---DWADQADVTKMSVIMILMF------LLAWSPYS-IVCLWAC--FGN-----PK-K-------I---------P-PS---MAIIAPL------FAKSSTFYNPCIYVA----AH----------------------------------------------KKFR Mus_musculus_RGR ---------VLA-----------------------VGTVLLMEALSGISLNGLTI----FSF-CK-TPDLR-TPSNLLVLSLAL--ADTGISLNA-LV------AAVSSLLR-RWPHGSEG-CQVHGFQGFATALAS---ICGSAAVAWGRYHHYC--------TRRQLAW------DT--AI---PLVLFV-WMSSAFWASLPLMGWGHYDYEPVGT-----------CCTLDY--------SRGDR--NF--IS-FLFTMAFFNFLVPLFI------------------------TH---------------------------------------------TSYR-----------------F---M---EQK----FSRSGHLPVNTTLPGRMLLLGWGPYA-LLYLYAA--IAD-----VS-F-------I---------S-PK---LQMVPAL------IAKTMPTINAINYAL----HR----------------------------------------------EMVC Mus_musculus_Rhodopsin --LAAY--MFLL------------------------IVL-------GFPINFLTL----YVT-VQ-HKKLR-TPLNYILLNLAV--ADLFMV-----FGGF-TTTLYTSLHG-YFVFGPTG-CNLEGFFATLGGEIA---LWSLVVLAIERYVVVC--KP---------MS-NFRF-GENHAI---MGVVFT-WIMALACAAPPLVGWSRYIPEGMQC-----------SCGIDY--------YTLKPEVNN--ES-FVIYMFVVHFTIPMIV------------------------IFFCYGQLVFTV---K----E---AA---------AQQQE------SATTQ-----------------K---A---EKE----VTRMVIIMVIFF------LICWLPYA-SVAFYIF--THQ-----GS-N-------F---------G-PI---FMTLPAF------FAKSSSIYNPVIYIM----LN----------------------------------------------KQFR Oncorhynchus_nerka_LWS --VSTLW-MIIV------------------------VIL-------SVFTNGLVL----VAT-AK-FKKLQ-HPLNWILVNLAI--ADIGET-----LLAS-TISVCNQFFG-YFILGHPM-CVFEGYTVSTCGIAA---LWSLAVISWERWVVVC--KP---------FG-SVKF-DAKWAM---GGIIFS-WVWSAFWCAPPIFGWSRYWPHGLKT-----------SCGPDV--------FGGNE--DPGVKS-YMITLMITCCFFPLFV------------------------IIFCYIFVWLAI---R----A---VA---------AQQKD------SESTQ-----------------K---A---EKE----VSRMVVVMIIAY------CVCWGPYT-CFACFAA--ANP-----GY-A-------F---------H-PL---AAAIPAY------FAKSATIYNPVIYVF----MN----------------------------------------------KQFR Petromyzon_marinus_Pineal_opsin --LAAL--MGTI------------------------TAL-------SLGENFAVI----VVT-AR-FRQLR-QPLNYVLVNLAA--ADLLVS-----AIGG-SVSFFTNIKG-YFFLGVHA-CVLEGFAVTYFGVVA---LWSLALLAFERYFVIC--RP---------LG-NFRL-QSKHAV---LGLAVV-WVFSLACTLPPVLGWSSYRPSMIGT-----------TCEPNW--------YSGEL--HD--HT-FILMFFSTCFIFPLAV------------------------IFFSYGKLIQKL---K----K---AS---------ETQRG------LESTR-----------------R---A---EQQ----VTRMVVVMILAF------LVCWMPYA-TFSIVVT--ACP-----TI-H-------L---------D-PL---LAAVPAF------FSKTATVYNPVIYIF----MN----------------------------------------------KQFR Petromyzon_marinus_RhA --LAAY--MFFL------------------------ILV-------GFPVNFLTL----FVT-VQ-HKKLR-TPLNYILLNLAV--ANLFMV-----LFGF-TLTMYSSMNG-YFVFGPTM-CNFEGFFATLGGEMS---LWSLVVLAIERYIVIC--KP---------MG-NFRF-GSTHAY---MGVAFT-WFMALSCAAPPLVGWSRYLPEGMQC-----------SCGPDY--------YTLNPNFNN--ES-FVIYMFLVHFIIPFIV------------------------IFFCYGRLLCTV---K----E---AA---------AAQQE------SASTQ-----------------K---A---EKE----VTRMVVLMVIGF------LVCWVPYA-SVAFYIF--THQ-----GS-D-------F---------G-AT---FMTVPAF------FAKTSALYNPIIYIL----MN----------------------------------------------KQFR Platynereis_dumerilii_C_opsin --CAAY--LFFI------------------------ACL-------GVSLNVLVL----VLF-IK-DRKLR-SPNNFLYVSLAL--GDLLVA-----VFGT-AFKFIITARK-TLLREEDGFCKWYGFITYLGGLAA---LMTLSVIAFVRCLAVL--RL-------GSFT-GLTT-RM--GV---AAMAFI-WIYSLAFTLAPLLGWNHYIPEGLAT-----------WCSIDW--------LSDET--SD--KS-YVFAIFIFCFLVPVLI------------------------IVVSYGLIYDKV---R----K---VA---------K---T------GGSVA-----------------K---A---ERE----VLRMTLLMVSLF------MLAWSPYA-VICMLAS--FGP-----KD-L-------L---------H-PV---ATVIPAM------FAKSSTMYNPLIYVF----MN----------------------------------------------KQFR Platynereis_dumerilii_R_opsin HYAVAA--WMTF-----------------------FGIL-------GVSGNLLVV----WTF-LK-TKSLR-TAPNMLLVNLAI--GDMAFS-----AINGFPLLTISSINK-RWVWGKLW-RELYAFVGGIFGLMS---INTLAWIAIDRFYVIT--NP-------LGAAQTMTK-KR--AF---IILTII-WANASLWALAPFFGWGAYIPEGFQT-----------SCTYDY--------LTQDM--NN--YT-YVLGMYLFGFIFPVAI------------------------IFFCYLGI-VRAIFAHHAEMM---AA---------D---A------D---K-----------------K---S---EIQ----IAKVAAMTIGTF------MLSWTPYA-VVGVFGM--IKP-----HS-E-------M-------FIH-PL---LAEIPVM------MAKASARYNPIIYAL----SH----------------------------------------------PKFR Rana_catesbeiana_SWS1 --QAIF--MGVV------------------------FII-------GTPLNAVVL----LVT-VK-YKKLR-QPLNYILVNISV--GGLLIC-----IFSN-FVVFINSWQG-YFFFGKAF-CAIEAFVGTLAGLVT---GWSLAFLAFERYIVIC--KP---------MG-TFTF-TSKHAL---AVVLTT-WMIGVGVSVPPFFGWSRYIPEGLQC-----------SCGPDW--------YTVGTKYHS--EY-YTWFIFVFCFIIPLTL------------------------ICYSYARLLGAL---R----A---VA---------AQQQE------SASTQ-----------------K---A---EKE----VSRMVVVMVGSF------CLCYVPYA-AMAMYMI--TNR-----NH-G-------L---------D-LR---FVTIPAF------FSKSACVYNPIIYTF----MN----------------------------------------------KQFR Rattus_norvegicus_Blue_cone_opsin --QAAF--MGFV------------------------FFA-------GTPLNATVL----VAT-LH-YKKLR-QPLNYILVNVSL--GGFLFC-----IFSV-FTVFIASCHG-YFLFGRHV-CALEAFLGSVAGLVT---GWSLAFLAFERYLVIC--KP---------FG-NIRF-NSKHAL---TVVLIT-WTIGIGVSIPPFFGWSRFIPEGLQC-----------SCGPDW--------YTVGTKYRS--EH-YTWFLFIFCFIIPLSL------------------------ICFSYFQLLRTL---R----A---VA---------AQQQE------SATTQ-----------------K---A---ERE----VSHMVVVMVGSF------CLCYVPYA-ALAMYMV--NNR-----NH-G-------L---------Y-LR---LVTIPAF------FSKSSCVYNPIIYCF----MN----------------------------------------------KQFR Schistosoma_mansoni_Opsin YYLVGI--YIGI-----------------------VGIL-------AVMGNSLVI----TLF-LL-CKQLR-TPPNMLIVSLAI--SDFSFA-----LINGFPLKTIAAFNH-RWGWGKLA-CELYGFAGSIFGFIS---LTTMAFIALDRYLVIV--QP-------FETFSRITY-GK--VI---VMIFIT-WIWSALWSIPPFFGYGSYIPEGFHT-----------SCTFDY--------LSTDL--PN--LI-FNAGLYILGFLCPVFI------------------------IIFSYYQI-VKTVRLNELELM---KK---------T---G------D---K-----------------K---A---DIE----AAKTSIILVLLY------LMSWSPYA-IVCLMTL--IGS-----RD-S-------L---------T-PF---HSELPVL------FAKTSAVYNPIVYAV----KH----------------------------------------------PKFR Sepia_officinalis_Opsin YYSLGI--FIGI-----------------------CGII-------GCTGNGIVI----YLF-TK-TKSLQ-TPANMFIINLAF--SDFTFS-----LVNGFPLMTISCFIK-KWVFGMAA-CKVYGFIGGIFGLMS---IMTMSMISIDRYNVIG--RP-------MAASKKMSH-RR--AF---LMIIFV-WMWSTLWSIGPIFGWGAYVLEGVLC-----------NCSFDY--------ITRDS--AT--RS-NIVCMYIFAFCFPILI------------------------IFFCYFNI-VMAVSNHEKEMA---AA---------Q---A------G---A-----------------S---A---EMK----LAKISIVIVTQF------LLSWSPYA-VVALLAQ--FGP-----IE-W-------V---------T-PY---AAQLPVM------FAKASAIHNPLIYSV----SH----------------------------------------------PKFR Takifugu_rubripes_TMT_opsin --VVSV-FLGFI------------------------GTF-------GLVNNLLVL----VLF-CR-YKMLR-SPINLLLMNISI--SDLLVC-----VLGT-PFSFAASTQG-RWLIGEAG-CVWYGFANSLFGVVS---LISLAVLSFERYSTMM--TP-------TEAD-PSNY-CK--VC---LGITLS-WVYSLVWTVPPLFGWSSYGPEGPGT-----------TCSVNW--------TAKTT--NS--IS-YIICLFVFCLIVPFLV------------------------IVFCYGKLLCAI---R----Q---VS------GINA---S--------TSR-----------------K---R---EQR----VLCMVVIMVICY------LLCWLPYG-VVALLAT--FGP-----PD-L-------V---------T-PE---ASIIPSV------LAKSSTVINPIIYVF----MN----------------------------------------------KQ-- Terebratalia_transversa_C_opsin --IIVL--VLFV-----------------------TAIL-------GFFMNGSVL----IIF-YR-KKELR-SPTNMFIISMAF--NDLMMS-----ILGN-PFAAVSNLHH-RWIFGDAA-CVWYGFIMFFLGLNG---IYHLTAIAFDRYIVIA--KP-------LLSS-KITT-RV--AA---LAISVC-WFGAFLWSVFPVFGWSSYVEEGEHS-----------SCSINW--------ISQSI--VD--SS-YIISIFIFCFFLPILL------------------------VIFSYFHVYMTV---R----T---IA---------K---S------NTFTK-----------------KNEAV---ERK----MAKMVIIMITVF------FGSWSPYA-IVSMFVA--FGD-----GS-S-------L---------P-AA---AIAAPAI------IAKSAMIWNPIIYVL----MN----------------------------------------------VQFR Terebratalia_transversa_Go_opsin1 ---------MLATTTNHNLTSLSTHLSTHDSLHMLVGGILAALVFVGVTENTTAIYFLHQMK-KN-ARQAR-PFYILL---HAMTACDILVLLTAGMM------SSISGLSR-KWLFGDAG-CKAYAFLSFFFALTNENLI---VGISLYRYIFVC--KP----HYKEFLS------TK--NVYYW--IAMS-MGYSVFWCSLPLLGFSNYELEPIGI-----------VCSANW--------QSNEL--DS--VS-YTCLIMFFCFILQAIILGKLYHEIVNKTKGLFGFAGCNSSII---------------------------------------------TKMK-----------------K---L---EKR----RNWLCLLLVLTF------IITWSPYA-IISM-------------LR-R-------I---------TGPIDKWIHAFPIL------LAKTSPVICPIIY--RFAGHDFNMSMPCSNCCNIHVHCSCLLGQDAETIVDDIAIRNLKFHGILTDHQAVK Terebratalia_transversa_Go_opsin2 ---------MEVETCYRI-------------LYIIIG-------LSGTITNAYAI----RMF-WN-SPMKQ-KWYHIL---YFI--CNIGVILPS-FA------SSILLIEG-WWTI--RV-CNLYGVVAHAFGFSS---I---VAVS-----FVT--KV----TLTQSAP------SK--VV-----VLTT-VATCILLAMFPYIGLCRYVPDKHHT-----------NCFIDW--------HSNNT--T--------------CHLLLAVI-GLLFY-LVPCT----GSCLCYTTTI---------------------------------------------TTDG-----------------M---F---THA----KSKLVVSLIAMT------IVCWLPFG-VISLWEI--FAD-----VK-Y-------V---------T-PM---MEATPPI------VAKLGVTLTPLLYVLYWDGKD----------------------------------------------QKNK Terebratalia_transversa_R_opsin HILFGT--YISI-----------------------IGLL-------AVFGNGLIL----GVF-KR-CKALRLRPSSVLTISLLA--SDMAFS-----AVNGFPILTFTSYYK-KWIFGSTG-CQLYAFLGSLFGITS---INTMNLMAIERYLTIK--TN-------LYLMHSGTF-KR--NL---VFVAIA-WLWALLIALMPVLGWGRYVLEGFQT-----------TCSFDY--------LTKSA--NN--LS-YIMFLMILGFCNPLAC------------------------ITTSYAAI-FKKVNSNYKVLT---QA---------A---T------S---NGCGAGLRSGREIEEKAYR---T---ELK----IIKTAFVVTLAF------LLSWLPYT-IVAMLGL--TRY-----DY-L-------I---------S-PY---VSQIPVM------VAKTSAIYNPIIHVF----LY----------------------------------------------PKLR Todarodes_pacificus_Opsin YYSLGI--FIGI-----------------------CGII-------GCGGNGIVI----YLF-TK-TKSLQ-TPANMFIINLAF--SDFTFS-----LVNGFPLMTISCFLK-KWIFGFAA-CKVYGFIGGIFGFMS---IMTMAMISIDRYNVIG--RP-------MAASKKMSH-RR--AF---IMIIFV-WLWSVLWAIGPIFGWGAYTLEGVLC-----------NCSFDY--------ISRDS--TT--RS-NILCMFILGFFGPILI------------------------IFFCYFNI-VMSVSNHEKEMA---AA---------Q---A------G---A-----------------N---A---EMR----LAKISIVIVSQF------LLSWSPYA-VVALLAQ--FGP-----LE-W-------V---------T-PY---AAQLPVM------FAKASAIHNPMIYSV----SH----------------------------------------------PKFR Xenopus_laevis_Green_rod_opsin --ISAF--MLFT------------------------IIF-------GFPLNLLTI----ICT-VK-YKKLR-SHLNYILVNLAV--ANLIVI-----CFGS-TTAFYSFSQM-YFSLGTLA-CKIEGFTATLGGIIG---LWSLAVVAFERFLVIC--KP---------MG-NFTF-RESHAV---LGCILT-WVIGLVAAIPPLLGWSRYIPEGLQC-----------SCGPDW--------YTVNNKWNN--ES-YVLFLFCFCFGFPLAI------------------------IVFSYGRLLLAL---H----A---VA---------KQQEQ------SATTQ-----------------K---A---ERE----VTRMVIVMVVGF------LVCWLPYA-SFALWAV--THR-----GE-L-------F---------D-LR---MSSVPSV------FSKASTVYNPFIYIF----MN----------------------------------------------RQFR Xenopus_laevis_MLT --ALAV--VLIF-----------------------TIVV-------DVLGNILVI----LSV-LR-NKKLQ-NAGNLFVVSLSI--ADLVVA-----VYPY-PVILIAIFQN-GWTLGNIH-CQISGFLMGLSVIGS---VFNITAIAINRYCYIC--HS-------LRYDKLYNQ-RS--TW---CYLGLT-WILTIIAIVPNFF-VGS-----LQ----Y--DPRIFSCTFAQ------------T--VS--SS-YTITVVVVHFIVPLSV------------------------VTFCYLRIWVLVIQVK----H---RV---------R---QDFKQKLT---Q-----------------T---D---LRN----FLTMFVVFVL-F------AVCWAPLN-FIGLAVA--INP-----FH-VAPKIPEWL------------F---VLSY--F------MAYFNSCLNAVIYGV----LN----------------------------------------------QNFR Xenopus_laevis_Melanopsin LYTIGS--FILI-----------------------IGSV-------GIIGNMLVL----YAF-YR-NKKLR-TAPNYFIINLAI--SDFLMS-----ATQA-PVCFLSSLHR-EWILGDIG-CNVYAFCGALFGITS---MMTLLAISINRYIVIT--KP-------LQSIQWSSK-KR--TS---QIIVLV-WMYSLMWSLAPLLGWSSYVPEGLRI-----------SCTWDY--------VTSTM--SN--RS-YTMMLCCCVFFIPLIV------------------------ISHCYLFM-FLAIRSTGRNVQ---KL---------S---Q------S---M-----------------K---N---EWK----MAKIAFVIIIVF------VLSWSPYA-CVTLIAW--AGH-----GK-S-------L---------T-PY---SKTVPAV------IAKASAIYNPIIYGI----IH----------------------------------------------PKYR ; END; [ The following blocks are output data for analysis step 11275 ] BEGIN TREES; TITLE 'opsin-5M'; LINK TAXA = TaxaForAnalysisStep11275; TREE opsin_con_50_majrule = [&R] (Terebratalia_transversa_Go_opsin2:0.8666791598166114,Terebratalia_transversa_Go_opsin1:0.3835803275669745,((((Mus_musculus_RGR:0.06006838457383274,(Bos_taurus_RGR:0.06216606018465384,Homo_sapiens_RGR:0.03751585531590549):0.0541498543855105):0.6842344618826676,(Branchiostoma_belcheri_Amphiop3:0.4077025838983336,(Mus_musculus_Peropsin:0.05809126281879778,Homo_sapiens_Peropsin:0.0568995637251714):0.3200684111214618):0.167713546840811):0.1393614672826312,((((((((Terebratalia_transversa_R_opsin:0.5249070257224521,Schistosoma_mansoni_Opsin:0.3468517038243416):0.07488036224719656,Platynereis_dumerilii_R_opsin:0.3390300781602382):0.06416226161166166,(Enteroctopus_dofleini_Opsin:0.05027017905082964,(((Loligo_forbesii_Opsin:0.01655479040699409,Alloteuthis_subulata_Opsin:0.02532394310088233):0.03673562972571259,Sepia_officinalis_Opsin:0.02414870338065487):0.01921030982584876,Todarodes_pacificus_Opsin:0.03627517294269025):0.1138465592256186):0.1933046159418628):0.04257084193408015,Mizuhopecten_yessoensis_Gq_rhodopsin:0.2485473247730411):0.1042903329690615,(Xenopus_laevis_Melanopsin:0.2221093031772858,(Mus_musculus_Melanopsin:0.03643015652067508,Homo_sapiens_Melanopsin:0.03596128499811171):0.1562804837392987):0.2469035021089338):0.05390149860174258,(Limulus_polyphemus_Ocellus_opsin:0.411027681492844,Hemigrapsus_sanguineus_Rh1:0.3401241378516178):0.1963114199864864):0.1714227369222506,((Mus_musculus_MLT:0.2806563526854677,Xenopus_laevis_MLT:0.2607979056815578):0.5645475744791713,((Homo_sapiens_Somatostatin:0.497046979571417,Drosophila_melanogaster_Allatostatin:0.401175976639575):0.1965744909587007,(Homo_sapiens_NK_1_receptor:0.4280362690687478,Drosophila_melanogaster_Tachykinin_like_receptor:0.3927180125294593):0.2475922063871038):0.1363841025440738):0.2642165069562111):0.09256866570937394,(Terebratalia_transversa_C_opsin:0.4383642661104891,(Platynereis_dumerilii_C_opsin:0.4822220177426759,(((Homo_sapiens_Encephalopsin:0.01764385011314352,Mus_musculus_Encephalopsin:0.08880405557041149):0.4831933177642187,Takifugu_rubripes_TMT_opsin:0.2973764564492163,(Branchiostoma_belcheri_Opsin5:0.2872248647427697,Branchiostoma_belcheri_Opsin4:0.1908276253984273):0.1651411939483314):0.08318920962334724,(Anopheles_gambiae_GPRop11:0.08327414943686569,Anopheles_gambiae_GPRop12:0.0227137861151459):0.4100943649178104,(Ciona_intestinalis_Opsin1:0.4310094113419806,(Danio_rerio_VAL_opsin:0.1306993113489908,Petromyzon_marinus_Pineal_opsin:0.159196358889521):0.2173481503234056,((Oncorhynchus_nerka_LWS:0.08626815992228565,Geotria_australis_LWS:0.08856236824225361):0.3438851120026361,(Anolis_carolinensis_P_opsin:0.1587462432209323,((Geotria_australis_SWS:0.06891561011154833,(Rana_catesbeiana_SWS1:0.0929577616677107,(Rattus_norvegicus_Blue_cone_opsin:0.07973992835448397,Cynops_pyrrhogaster_SWS1:0.07811093438673813):0.04372190783391743):0.07073093093638279):0.209910284773471,((((Petromyzon_marinus_RhA:0.03206612319608503,Geotria_australis_RhA:0.04756241178169698):0.03544007474583842,(Latimeria_chalumnae_Rh2:0.07436153022342155,(Homo_sapiens_Rhodopsin:0.03044459093672729,Mus_musculus_Rhodopsin:0.01018579011766695):0.05650365785868387):0.07090965065703202):0.04631979582456754,(Latimeria_chalumnae_Rh1:0.1067460396948839,Geotria_australis_RhB:0.08659482293406721):0.03236896245038362):0.1923899869543813,(Geotria_australis_SWS2:0.140110455137425,(Xenopus_laevis_Green_rod_opsin:0.09077780090054559,Gallus_gallus_Blue_Cone_opsin:0.1304896063148605):0.07902720868186815):0.07820531152751924):0.06343611919466217):0.1509544837448004):0.05125793292347382):0.05543374178930627):0.2797270768606784):0.0774772706494071):0.118436715453859):0.08051873710202424):0.08964998367124756):0.1045278600228003,((Branchiostoma_belcheri_Amphiop2:0.4332540265077043,Branchiostoma_belcheri_Amphiop1:0.4033732840168339):0.2008730009871817,Mizuhopecten_yessoensis_Go_rhodopsin:0.5782155146205085):0.1130340838924135):0.289704727978331); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr62477] END;