#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 21, 2025; 4:48 GMT

TreeBASE (cc) 1994-2008

Study reference:
Engene N., & Paul V.J. 2013. Five Chemically Rich Species of Tropical Marine Cyanobacteria
of the Genus Tropicimarinus Gen. Nov. (Oscillatoriales, Cyanobacteria).
Journal of Phycology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S14246]

[ The following blocks are input data for analysis step 11475 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep11475;
        DIMENSIONS NTAX=19;
        TAXLABELS
            Microcoleus_chthonoplastes_AF013025
            Oscillatoria_sancta_AY221815
            Oscillatoria_sancta_PCC_7515_AY768418
            Trichodesmium_erythraeum_L00689
            Trichodesmium_sp_IMS101_AF016484
            Trichodesmium_sp_L00688
            Trichodesmium_thiebautii_M29709
            Trichodesmium_thiebautii_TTU23507
            Tropicimarinus_coarmio_3LOSC_KC992980
            Tropicimarinus_erythrofloccus_FFP12_1_KC992981
            Tropicimarinus_erythrofloccus_FFP12_7_KC992982
            Tropicimarinus_plumacii_BCBC12_21_KC992986
            Tropicimarinus_plumacii_FFP12_27_KC992985
            Tropicimarinus_plumacii_FK12_4_KC992984
            Tropicimarinus_plumacii_NAB11_47_KC992987
            Tropicimarinus_plumacii_NAC8_45_KC992988
            Tropicimarinus_plumacii_NAC8_46_KC992989
            Tropicimarinus_verber_FK12_17_KC992983
            Tropicimarinus_villus_NAC11_70_KC992990
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M17127]

	TITLE Tropicimarinus_nifH;
	LINK TAXA = TaxaForAnalysisStep11475;
	DIMENSIONS NCHAR=361;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360 ]
[                                                           .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         . ]
Microcoleus_chthonoplastes_AF013025                ---------------TCCACTCGTTTGATTCTACACGCTAAAGCACAAACCACCGTGCTACACATGGCTGCTGAAAGAGGCGCCATTGAAGATGTAGAACTCGAAGAAGTACTCAAAGCTGGCTACGCTGGCATCCAGTGCGTTGAGTCCGGTGGTCCAGAGCCTGGAGTTGGCTGCGCTGGTCGGGGTATCATCACTGCCATTAACTTCCTCGAAGAAAATGGTGCTTACGAAGACCTAGACTTCGTTAGCTATGACGTACTAGGTGACGTTGTTCGCGGTGGTTTTGCAATGCCAATTCGCGAAGGCAAAGCCCAAGAAATCTACATCGT-TGTTTCT---------------------
Oscillatoria_sancta_AY221815                       ---------------TCTACTCGTTTGATCTTAAACGCAAAAGCTCAAACTACTGTACTTCACGTTGCTGCTGAACGCGGTGCAGTTGAAGACGTAGAACTAGACGAAGTATTGAAAGCAGGTTTCGCTGGCATCAAGTGCGTTGAGTCTGGTGGTCCTGAGCCTGGAGTTGGTTGTGCAGGTCGTGGTATTATCACTGCTATCAACTTCCTAGAAGAAGAAGGTGCTTATACAGATTTAGATTTCGTAAGCTATGATGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATACCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCC----------------------
Oscillatoria_sancta_PCC_7515_AY768418              ------AAGGCTGACTCTACTCGTTTGATCTTAAACGCAAAAGCTCAAACTACTGTACTTCACGTTGCTGCTGAACGCGGTGCAGTTGAAGACGTAGAACTAGACGAAGTATTGAAAGCAGGTTTCGCTGGCATCAAGTGCGTTGAGTCTGGTGGTCCTGAGCCTGGAGTTGGTTGTGCAGGTCGTGGTATTATCACTGCTATCAACTTCCTAGAAGAAGAAGGTGCTTATACAGATTTAGATTTCGTAAGCTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGCGAATTGATGG---------
Trichodesmium_erythraeum_L00689                    GACCCTAAAGCTGACTCTACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCTGAACGCGGTGCAGTTGAAGACGTAGAACTAGATGAAGTATTGAAACCAGGTTTCGGTGGCATTAAGTGTGTTGAGTCTGGTGGTCCTGAGCCTGGTGTAGGTTGCGCTGGCCGTGGTATTATTACTGCTATCAACTTCCTAGAAGAAGAAGGAGCTTATACAGATCTAGATTTCGTAAGCTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAGATGATGGCA-------
Trichodesmium_sp_IMS101_AF016484                   GACCCTAAAGCTGACTCTACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCTGAGCGCGGTGCAGTTGAAGACGTAGAACTAGATGAAGTATTGAAACCAGGTTTCGGTGGCATTAAGTGTGTTGAGTCTGGTGGTCCTGAGCCTGGTGTAGGTTGCGCTGGCCGTGGTATTATTACTGCTATCAACTTCCTAGAAGAAGAAGGAGCTTATACCGATCTAGACTTCGTAAGCTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAGATGATGGCTATGTATG
Trichodesmium_sp_L00688                            GACCCTAAAGCTGACTCTACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCTGAGCGCGGTGCAGTTGAAGACGTAGAACTAGATGAAGTATTGAAACCAGGTTTCGGTGGCATTAAGTGTGTTGAGTCTGGTGGTCCTGAGCCTGGTGTAGGTTGCGCTGGCCGTGGTATTATTACTGCTATCAACTTCCTAGAAGAAGAAGGAGCTTATACAGATCTAGATTTCGTAAGCTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAGATGATGGCA-------
Trichodesmium_thiebautii_M29709                    GACCCTAAAGCTGACTCTACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCTGAACTCGGTGCAGTTGAAGACGTAGAACTAGACCAAGTATTGAAGCCAGGTTTCGGTGGCATTAAGTGTGTTGAGTCTGGTGGTCCTGAGCCTGGTGTAGGTTGCGCTGGCCGTGGTATTATTACTGCTATCAACTTCTTAGAAGAAGAAGGAGCTTATACAGATCTAGATTTCGTAAGCTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAGATGATGGCA-------
Trichodesmium_thiebautii_TTU23507                  GACCCTAAAGCTGACTCTACTCGTTTAATCTTAGACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCTGAACTCGGTGCAGTTGAAGACGTAGAACTAGACCAAGTATTGAAGCCAGGTTTCGGTGGCATTAAGTGTGTTGAGTCTGGTGGTCCTGAGCCTGGTGTAGGTTGCGCTGGCCGTGGTATTATTACTGCTATCAACTTTCTAGAAGAAGAAGGAGCCTATACCGATCTAGATTTCGTAAGCTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAGATGATGGCAATGTACG
Tropicimarinus_coarmio_3LOSC_KC992980              GACCCTAAGGCTGATTCTACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCAGAGCGCGGTGCAGTTGAAGATGTAGAGCTAGAAGAAGTATTGAAAGATGGTTTCGCTGGCATCAAGTGCGTTGAGTCTGGTGGTCCTGAGCCTGGAGTAGGTTGTGCAGGTCGTGGTATTATCACTGCTATCAACTTCCTAGAAGAAGAGGGTGCTTATACCGATCTAGATTTCGTAAGTTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAAATGATGGCGATGTATG
Tropicimarinus_erythrofloccus_FFP12_1_KC992981     GACCCTAAGGCTGATTCTACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCAGAGCGCGGTGCAGTTGAAGATGTAGAACTAGATGAAGTATTGAAAGATGGTTTCGCTGGAATCCGTTGCGTTGAGTCTGGTGGTCCTGAGCCTGGAGTAGGTTGTGCAGGTCGTGGTATCATCACTGCTATCAACTTCCTAGAAGAAGAAGGTGCTTATACCGATCTAGATTTCGTAAGTTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAAATGATGGCGATGTATG
Tropicimarinus_erythrofloccus_FFP12_7_KC992982     GACCCTAAGGCTGATTCTACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCAGAGCGCGGTGCAGTTGAAGATGTAGAACTAGATGAAGTATTGAAAGATGGTTTCGCTGGAATCCGTTGCGTTGAGTCTGGTGGTCCTGAGCCTGGAGTAGGTTGTGCAGGTCGTGGTATCATCACTGCTATCAACTTCCTAGAAGAAGAAGGTGCTTATACCGATCTAGATTTCGTAAGTTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAAATGATGGCGATGTATG
Tropicimarinus_plumacii_BCBC12_21_KC992986         GACCCTAAGGCTGACTCAACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCAGAGCGTGGTGCAGTTGAAGATGTAGAACTAGACGAAGTATTGAAAGATGGTTTTGCAGGCATCCGTTGCGTTGAGTCTGGTGGTCCTGAGCCTGGTGTAGGTTGCGCAGGTCGTGGTATTATCACTGCTATCAACTTCCTAGAAGAAGAAGGTGCTTATACAGACCTAGATTTCGTAAGTTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAAATGATGGCGATGTATG
Tropicimarinus_plumacii_FFP12_27_KC992985          GACCCTAAGGCTGACTCAACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCAGAGCGTGGTGCAGTTGAAGACGTAGAACTAGACGAAGTATTGAAAGATGGTTTTGCAGGCATCCGTTGCGTTGAGTCTGGTGGTCCTGAGCCTGGTGTAGGTTGCGCAGGTCGTGGTATTATCACTGCTATCAACTTCCTAGAAGAAGAAGGTGCTTATACAGACCTAGATTTCGTAAGTTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAAATGATGGCGATGTATG
Tropicimarinus_plumacii_FK12_4_KC992984            GACCCTAAGGCTGACTCAACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCAGAGCGTGGTGCAGTTGAAGACGTAGAACTAGACGAAGTATTGAAAGATGGTTTTGCAGGCATCCGTTGCGTTGAGTCTGGTGGTCCTGAGCCTGGTGTAGGTTGCGCAGGTCGTGGTATTATCACTGCTATCAACTTCCTAGAGGAAGAAGGTGCTTATACAGACCTAGATTTCGTAAGTTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAAATGATGGCGATGTATG
Tropicimarinus_plumacii_NAB11_47_KC992987          GACCCTAAGGCTGACTCAACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCAGAGCGTGGTGCAGTTGAGGACGTAGAACTAGACGAAGTATTGAAAGATGGTTTTGCAGGCATCCGTTGCGTTGAGTCTGGTGGTCCTGAGCCTGGCGTAGGTTGCGCAGGTCGTGGTATTATCACTGCTATCAACTTCCTAGAAGAAGAAGGTGCTTATACAGACCTAGATTTCGTAAGTTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAAATGATGGCGATGTATG
Tropicimarinus_plumacii_NAC8_45_KC992988           GACCCTAAGGCTGACTCAACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCAGAGCGTGGTGCAGTTGAAGACGTAGAACTAGACGAAGTATTGAAAGATGGTTTTGCAGGCATCCGTTGCGTTGAGTCTGGTGGTCCTGAGCCTGGTGTAGGTTGCGCAGGTCGTGGTATTATCACTGCTATCAACTTCCTAGAAGAAGAAGGTGCTTGTACAGACCTAGATTTCGTAAGTTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAAATGATGGCGATGTATG
Tropicimarinus_plumacii_NAC8_46_KC992989           GACCCTAAGGCTGACTCAACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCAGAGCGTGGTGCAGTTGAAGACGTAGAACTAGACGAAGTATTGAAAGATGGTTTTGCAGGCATCCGTTGCGTTGAGTCTGGTGGTCCTGAGCCTGGTGTAGGTTGCGCAGGTCGTGGTATTATCACTGCTATCAACTTCCTAGAAGAAGAAGGTGCTTATACAGACCTAGATTTCGTAAGTTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAAATGATGGCGATGTATG
Tropicimarinus_verber_FK12_17_KC992983             GACCCTAAGGCTGATTCAACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCAGAGCGCGGTGCAGTTGAAGACGTAGAACTAGACGAAGTATTGAAAGATGGTTTTGCTGGAATCCGTTGCGTTGAGTCTGGTGGTCCTGAGCCTGGAGTTGGTTGTGCAGGTCGTGGTATTATCACTGCTATCAACTTCCTAGAGGAAGAAGGTGCTTATCAAGACCTAGATTTCGTAAGTTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAAATGATGGCGATGTATG
Tropicimarinus_villus_NAC11_70_KC992990            GACCCTAAGGCTGATTCTACTCGTTTAATCTTAAACGCTAAAGCTCAAACTACTGTACTTCACGTTGCTGCAGAGCGCGGTGCAGTTGAAGACGTAGAACTAGACGAAGTATTGAAAGATGGTTTCGCAGGCATCCGTTGCGTTGAGTCTGGTGGTCCTGAGCCTGGAGTAGGTTGTGCAGGTCGTGGTATCATCACTGCTATCAACTTCCTAGAAGAAGAAGGTGCTTATACCGATCTAGATTTTGTAAGTTATGACGTACTAGGTGACGTTGTTTGCGGTGGATTTGCAATGCCTATCCGTGAAAACAAAGCTCAAGAAATCTACATCGTATGTTCCGGTGAAATGATGGCGATGTATG
;
END;

[ The following blocks are output data for analysis step 11475 ]
BEGIN TREES;
      TITLE Tropicimarinus_nifH;
      LINK TAXA = TaxaForAnalysisStep11475;
      TREE PAUP_1 = [&R] (Microcoleus_chthonoplastes_AF013025:0.13722202,(((Oscillatoria_sancta_PCC_7515_AY768418:1.0E-8,Oscillatoria_sancta_AY221815:0.00815947):0.01834255,(Trichodesmium_sp_IMS101_AF016484:0.01521784,((Trichodesmium_thiebautii_TTU23507:0.01684556,Trichodesmium_thiebautii_M29709:0.00351608):0.01694158,(Trichodesmium_sp_L00688:0.0036752,Trichodesmium_erythraeum_L00689:1.0E-8):1.0E-8):0.0):0.04503205):0.00603284,((Tropicimarinus_villus_NAC11_70_KC992990:0.00624172,(Tropicimarinus_coarmio_3LOSC_KC992980:0.02095306,(Tropicimarinus_erythrofloccus_FFP12_7_KC992982:1.0E-8,Tropicimarinus_erythrofloccus_FFP12_1_KC992981:1.0E-8):0.00510324):0.00412151):0.00631317,(Tropicimarinus_verber_FK12_17_KC992983:0.0162694,(Tropicimarinus_plumacii_FK12_4_KC992984:0.00360685,(Tropicimarinus_plumacii_NAB11_47_KC992987:0.00724433,(Tropicimarinus_plumacii_BCBC12_21_KC992986:0.00361355,(Tropicimarinus_plumacii_NAC8_46_KC992989:1.0E-8,(Tropicimarinus_plumacii_NAC8_45_KC992988:0.00360688,Tropicimarinus_plumacii_FFP12_27_KC992985:1.0E-8):1.0E-8):1.0E-8):1.0E-8):8.0E-7):0.01424913):0.00912464):0.02471927):0.13722202);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr63639]


END;