#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 10, 2025; 9:37 GMT TreeBASE (cc) 1994-2008 Study reference: Yang X., Gallegly M.E., & Hong C. 2013. A new high-temperature tolerant species in clade 9 of the genus Phytophthora: P. hydrogena sp. nov. Mycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S14412] [ The following blocks are input data for analysis step 11707 ] BEGIN TAXA; TITLE TaxaForAnalysisStep11707; DIMENSIONS NTAX=28; TAXLABELS Phytophthora_andina_EC3421_AY770738 Phytophthora_aquimorbida_40A6_FJ666127 Phytophthora_captiosa_310C_DQ297402 Phytophthora_chrysanthemi_GF749_AB437135 Phytophthora_cinnamomi_CBS14422_HQ643189 Phytophthora_constricta_CBS125801_HQ013225 Phytophthora_fallax_310L_DQ297391 Phytophthora_foliorum_LT192_HQ261560 Phytophthora_gonapodyides_CBS55467_HQ643236 Phytophthora_hedraiandra_CBS111725_AY707987 Phytophthora_heveae_IMI180616_AF266770 Phytophthora_humicola_CBS20081_HQ643243 Phytophthora_hydrogena_44G8_KC249958 Phytophthora_hydrogena_46A3_KC249959 Phytophthora_hydrogena_46A4_KC249960 Phytophthora_hydropathica_5D1_EU583793 Phytophthora_ilicis_CBS114348_JX524158 Phytophthora_infestans_2C_KC733443 Phytophthora_insolita_PMC5_GU111612 Phytophthora_irrigata_23J7_EU334634 Phytophthora_macrochlamydospora_UQ778_KC733445 Phytophthora_meadii_CBS21988_HQ643268 Phytophthora_parsiana_SUC25_KC733446 Phytophthora_pinifolia_CMW26668_EU725806 Phytophthora_polonica_UASWS0198_DQ396410 Phytophthora_quininea_CBS40648_DQ275189 Phytophthora_rubi_CBS96795_HQ643340 Pythium_aphanidermatum_P1779_GU983641 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M17636] TITLE Figure.2A_ITS_Matrix; LINK TAXA = TaxaForAnalysisStep11707; DIMENSIONS NCHAR=901; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Phytophthora_andina_EC3421_AY770738 CCACACCTAAAAA--CTTTCCACGTGAACCGTTTCAACCCAA-TAGTTGGGGGTCTTACTTGG-CG-GCGGCTGCTGGCTTTATT---GCTGGCG-GCTACTGCTGGGCGAGCCCTATCAAAAGGCGAGCGTTTGGACTTC--------GGTCTGAGCTAGTAGCTTT-TTTATTTTAAACCCTTTACTTAA--T-ACTGATT-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAACAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGATGC-CAGATGTGAAGTGTCTTGC--GGTTGGT-------------------TTTCGGACCGA--CTGCGAGTCCTTTTAAATGTACTAAACTGTACT-TCTCTTTGCTCCAAAAGTGGTGGCATT--GCTGGTTGTGGACGCTGCT-ATTGTAGCGAGTTGG---CGACCGGTTTGTCTGCTGCGGCGTT-AATGGAGAAATGCTCGATTCGTGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGGTGATTTTCCTGCTGT---GGCGTG---ATGGACTGGTGAACCATGGCTCTTTA--GCT-TGGCATTTGAATCGGCTTTGCTG-TTGCGAAGTAGAGTGGCGGCT--------------TCGGC-TGCCGAGGG--TCGAT-CCATTTGGGAAATGT---T----------GTGTA---CTTCG-GT------ATGCATCTCAA Phytophthora_aquimorbida_40A6_FJ666127 CCACACCTAAAAA--CTTTCCACGTGAACTGTCTG------------TGA------TGTTGGGGGGCTG--CTGCT---GCTGCTTC------------GGTGGCGGCGTGCTCCCATCA---AACGAGGCCCTGGGCTGCA------AAGTCGGGGGTAGTAGTTAC--TTTTTGTAAACCCTTTTCCTGTATTTTCTGAAT-ATACTGGGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAATCTTGGCTTCCTTCCTTCCGTGTAGTCGGTGGC-GGGAACGCGCAGACGTGAAGTGTCTTGC--CTGTGGCTCCAGCTGTTGT---------TGGGGTGGTGTGGGCGAGTCCTTTGAAATGTAAGATACTGTTCT-TCTCTTTGCTGGAAAAGCG-T-GCGCTG-TGTGGTTGTGGAGGCTGCC-GTGGTGGCCAGTCGG---CGACTGACTT-CGTGCTGATGCGT---GTGGAGAGGCTCTGGATTCGCGGTATGGTTGGCTTCGGCTGAACT-TCTGCTTATTTGGGTGTCTTTTCGCTGCGTTGGCGTG--TCGGGGTTGGTGAACCGTAGTCATTTCGG-CT-TGGCTTTTGAACCGCGTGGCTGTAGCGCGAAGTATGGCGGCTGCCTTTGTG-----------GC-GGCCGAGAGG-ACGAC-CTATTTGGGACGATT--GT----------GC----GGCCTCGTGCT-------GCATCTCAA Phytophthora_captiosa_310C_DQ297402 CCACACCTTAAAAAAT--TCCACGTGAACTGTATTGTCAACCAAATTCGGGGAC--TCCTTGCTAGTGTGCTTTC-----------------GGGCGTGCCGGTAGGTTGAGACCCATCAA---ACGAAAACATCGACTGAA------AGGTCGGAGCCAGTAGTTAC---CTTTGTAAACCCTTTACTAAA---TACTGAA--AAACTGTGGGGACGAAAGTCCTTGCTTTTA-CTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCGTATATCAAACTTGCCTTCCTTCCTTCCGTGTAGTCGGTGGATGGGAACGTGCAGATGTGAAGTGTCTTGG--CGGCGTCGC-------------------TTCGGCGGTGCTGGCGAGTCCTTTTAAATACAAGATACTGTTCT-TCTCTTTGCTCGAAAAGCG--TGTGGGA-TGTGGTTGTGGAGGCTGCC-TGCGTGGCCAGTCGG---CGACTGATTT-CGTGCTGAGACGG----TGGGGAGGGGCTTGATTCGCGGTATGGTTGGCTTCGGCTGAACT-TCTGCTTATTGGGCTTCTTTCATGTCTT---GGCGTAT-GCGATTTTGGTGTACCGTAGCTGTGTGTGGCT-TGGCTTTTGAACCGTGTT--CTGTGTGCGAAGTAGAGTGGGCGTGTGGTTTTCGGA--CTGCGT-GGCCGAGGGG-ACGAGACCTTTTGGGAAATTGT-------------GCTGCTACTTTATTGTGGC----GGCATCTCAA Phytophthora_chrysanthemi_GF749_AB437135 CCACACCTAAAAA--CTTTCCACGTGAACTGTATTGTC---------TGT------TGTTGGGGGCTTGGGCTGGC---GTTTCGGC------------GCCGGCTCG-GGCTCC-ATCA---AACGAGGCTCTGGGCTGCA------AAGTCTGGGGTAGTAGTTACATTTTTTGTAAACCCTTTTCTTAATTTTTCTGATC-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGCTTCCTTCCTTCCGTGTAGTCGGTGGC-GGGAACGCGCAGACGTGAAGTGTCTTGC--TGGCCGTGTCTCCTCCTCTTTTGGGGTGGGGGGCATGGTCGGCGAGTCCTTTGAAATGTAAGATACTGTTCT-TCTCTTTGCTGGAAAAGCG-T-GGGTGG-TGTGGTTGTGGAGGCTGCC-GTTGTGGCAAGTCGG---CGACTGACTT-CGTGCTGAGGCGT---GTGGAGAGGAGCTCGATTCGCGGTATGGTTGGCTTCGGCTGAACT-TCTGCTTATTGGGCTGTTTT-CTGCTGTTTCGGCGTG--GCGTTGTTGGTGAACCGTAGTCATGGTGG-CT-TGGCTTTTGAACCGCGCTG-TGTTGCGCGAAGTATGGTGGCTTC---------------------GGCCGAGAGG-ACGAC-CTATTTGGGACCATTT-GT----------GC----GGCTTCGTGCT-------GCATCTCAA Phytophthora_cinnamomi_CBS14422_HQ643189 CCACACTAAAAAA--CTTTCCACGTGAACCGTATCAACCCAATTAGTTGGGGGCCTGCTCTGGGCG-GCGGCTGTCGATGTCAAAGTCGACGGCT-GCTGCTGCGTGGCGGGCCCTATCAC-TGGCGAGCGTTTGGGTCCCTCTCGGGGGAACTGAGCTAGTAGCC---TCTCTTTTAAACCCATTCTGTAA--T-ACTGAAC-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGGAGGTGC-CAGACGTGAGGTGTCTTGC--GGGCGGT-------------------CTTCGGACTGG--CTGTGAGTCCCTTGAAATGTACTGAACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTT--GCTGGTTGTGGAGGCTGCC-TGTATGGCCAGTCGG---CGACCGGTTTGTCTGCTGCGGCGTTTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAAAGCGCTTATTGGATGTTCTTCCTGCTGT---GGCGGT---ACGGATCGGTGAACCGTAGCTGTGCTAGGCT-TGGCGTTTGAACCGGCGGTGTTG-TTGCGAAGTAGGGTGGCGGCT--------------TCGGC-TGTCGAGGG--TCTAT-CCATTTGGGAACTCT--GTGTCT-CTGCGGCGCACTT--GTGTGCTTGTGGTGGCATCTCAA Phytophthora_constricta_CBS125801_HQ013225 CCACACCTTAAAAAACCATCCACGTGAACCGTATTGTCAAA-ACATTTGGGGAC--TCCTTGCTAGCGGGCTTTC-----------------GGGCTTGCCGGTCGGTTGAGACCTAACA-----CGAGAGCCTTGGCTGAA------AAGCCGGGGTGAGTAGTTTC---TTTT-TAAACCCTTTACTAAA---AACTGAA--AAACTGTGGGGACGAAAGTCCTTGCTTTTA-CTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCGTATATCAAACTTGCCTTCCTTCCTTCCGTGTAGTCGGTGGATGGGAACGTGCAGATGTGAAGTGTCTTGG--CGGCGTCGC-------------------TTTGGCGGTGCTGGCGAGTCCTTTTAAATACAAGATACTGTTCT-TCTCTTTGCTCGAAAAGCG--TGTGGGA-TGTGGTTGTGGAGGCTGCC-TGCGTGGCATGTCGG---CGACTGATTT-CGTGCTGAGGCGT----TGGAGGTGGGCTTGATTCGCGGTATGGTTGGCTTCGGCTGAACT-TCTGCTTATTGGGTTCTAATCTTGCTTT---GGCGTAT-GCGGGGTCGGTGTACCGTAGTCGTGTG-GGCT-TGGCTTTTGAACCGTGTT--TTGCGTGCGAAGTAGAGTGGCCGTGTGGTTTTCGGA--CTGCGT-GGCCGAGGGA-ACGAGACCTTTTGGGAAATTGT-------------GCTGCTACTTT--TGTGGC----GGCATCTCAA Phytophthora_fallax_310L_DQ297391 CCACACCTTAAAAAAT--TCCACGTGAACTGTATTGTCAACCAAATTCGGGGAT--TCCTTGCTAGCGTGCCTTC-----------------GGGCGTGCCGGTAGGTTGAGACCCATCAA---ACGAAAACATCGGCTGAA------AGGTCGGAGCCAGTAGTTAC---CTTTGTAAACCCTTTACTAAA---TACTGAA--AAACTGTGGGGACGAAAGTCCTTGCTTTTA-CTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCGTATATCAAACTTGCCTTCCTTCCTTCCGTGTAGTCGGTGGATGGGAACGTGCAGATGTGAAGTGTCTTGG--CGGCGTCGC-------------------TTCGGCGGTGCTGGCGAGTCCTTTTAAATACAAGATACTGTTCT-TCTCTTTGCTCGAAAAGCG--TGTGGGA-TGTGGTTGTGGAGGCTGCC-TGCGTGGCCAGTCGG---CGACTGATTT-CGTGCTGAGACGG----TGGGGAGGGGCTTGATTCGCGGTATGGTTGGCTTCGGCTGAACT-TCTGCTTATTGGGCTTCTTTCATGTCTT---GGCGTAT-GCGATTTCGGTGTACCGTAGCTGTGTGTGGCT-TGGCTTTTGAACCGTGTT--CTGTGTGCGAAGTAGAGTGGGCATGTGGTTTTCGGA--CTGCGT-GGCCGAGGGG-ACGAGACCTTTTGGGAAATTGT-------------GCTGCTACTTTATTGTGGC----GGCATCTCAA Phytophthora_foliorum_LT192_HQ261560 CCACACCTAAAAA--CTTTCCACGTGAACCGTATCAACACCCTTAGTTGGGGGC-TGCTGTT-CGG-CTGGCTT----------------CGGCT-G--GCTGGGCGGCGG-CTCTATCA--TGGCGAGCGCCTGGGCCTTC------GGGTCTGAGCTAGTAGCC----CACTTTTAAACCCATTCCTAAT--T-ACTGAAC-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGACGTGAAGTGTCTTGC--GGCTGGT-------------------CTTCGGTCCGG--CTGCGAGTCCTTTGAAATGTACTGAACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTTT-GTTGGTTGTGGAGGCTGCC-TGTGTGGCCAGTCGG---CGACCGGTTTGTCTGCTGCGGCGTTTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAGAGCGCTTATTGGATGCTTTTCCTGCTGT---GGCGGT---ACGGACTGGTGAACCGTAGCTGTGCGAGGCT-TGGCTTTTGAATCGGCGATGTGG--TGCGAAGTAGAGTGGCTGTTCGGCGCAAGC----TGGGC-GGTCGAGGG--TCGAT-CCATTTGGGAAATTT--GTGTT------GGCG-GCTTCGGCTTGCT------GGCATCTCAA Phytophthora_gonapodyides_CBS55467_HQ643236 CCACACCTAAAAAAACTTTCCACGTGAACCGTATCAACCCCTATAATTTGGGGGCTTGCTCGGCGGCGTGCGTGCTGGCCTGTAATGGGTCGGCGTGCTGCTGCTGGGCGGGCTCTATCAT-GGGCGAGCGTTTGGGCTTC--------GGCTCGAGCTAGTAGCTAT-CAA-TTTTAAACCCTTTCTTAAA--T-ACTGAAC-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATATGC-CAGACGTGAAGTGTCTTGC--TGGCGGT------------------CTTTCGAGTCTGC-CGGTGAGTCCTTTGAAATGTACTGAACTGTACTCTCTCTTTGCGCGAAAAGCG-TGGCGTT--GCTGGTTGTGGAGGCTGCC-TGTGTGGCCAGTCGG---CGACCGGTTTGTTAGCTGTGACGTTTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATCTGCTTATTGGGTGCTTTTCCTGTCATT--GGCGGT---ACGAACTGGTGAACCGTAGCTGTGTGGTGCT-TGGCTTTTGAACCGGCTTTGCT--TTGCGAAGTAGTGTGACGGCT--------------TCGGC-TGTCGAGGGG-TCGAT-CCATTTTGGGAAACT--TTTGT-------GTGTGCGGCTTCGTGCTGC---GCGCATCTCAA Phytophthora_hedraiandra_CBS111725_AY707987 CCACACCTAAAAA--CTTTCCACGTGAACCGTTTCAAACCAAATAGTTGGGGGTCTTGTCTGG-TG-GCGGCTGCTGACTTTATT---GTTGGCG-GCTGCTGCTGGACGAGCCCTATCA--TGGCGAGCGTTTGGGCTTC--------GGCCTGAGCTAGTAGCTTT-TCT--TTTAAACCCATTCCTTAA--T-ACTGATT-ATACTGTGGGGACGAAAGTCCTTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGATGC-CAGATGTGAAGTGTCTTGC--GGCTGGT-------------------TTTCGGACCGA--CTGCGAGTCCTTTTAAATGTACTGAACTGTACT-TCTCTTTGCTCGAAAAGCG-TGGCGTT--GCTGGTTGTGGAGGCTGCT-ATTGTAGCAAGTTGG---CGACCGGTTTGTCTGCTGCGGCGTT-AATGGAAGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGATGTTTTTTCTGCTGT---GGCGTG---ATGGACCGGTGAACCATAGCTCAGTG--GCT-TGGCTTTTGAATCGGCTTTGCTG-TTGCGAAGTAGAGTGGCGGCT--------------TCGGC-TGTCGAGGG--TCGAT-CCATTTGGGAAATGT--GT----------GTGTA---CTTCG-GT------ATGCATCTCAA Phytophthora_heveae_IMI180616_AF266770 CCACACCTAAAAA--ATTTCCACGTGAACCGTAACAAACCAAT-AGTTGGGGGC----------------------------GAGTTTGGCGGCT-ACTGCTGCTGGACGAGCTCTATCA--TGGCGAGCGTTTGGACTTC--------GGTCTGAACTAGTAGCC---CTTCTTTTAAACCCATTCCTAAT--T-ACTGATT-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACAACAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGATGC-CAGATGTGAAGTGTCTTGC--GGCTGGT-------------------TCTCGAACTGG--CTGCGAGTCCTTTGAAATGTACTGAACTGTACT-TCTCTTTGCTCGAAAAGCA-TGGCGTT--GCTGGTTGTGGAGGCTGCC-TGTGTGGCATGTCGG---CGACCGGTCTGTCTGCTGCAGCGTT-AATGGAGGCGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGTATGTGTTTCCTGTTGT---GGCGGT---AATGGCTGGTGTACCGTAGCTATGTGGTGCT-TGGCTTTTGAATCGGCTTTGCTG-TTGTGAAGTAGAGTGGCGGCT--------------TCGGC-TGTCGAGGG--TCGAT-CCATTTGGGAAATTT--GTGTGT------GCCTTTATTGGCGTGC----------ATCTCAA Phytophthora_humicola_CBS20081_HQ643243 CCACACCTAAAAA--CTTTCCACGTGAACCGTATCAACCCCTTAAGATTGGGAGCTTGCTCGGCGGCGTGCGTGCTGGCCTGTAATGGGTCGGCGTGCTGCTGCTGCGCGGGCTCTATCAT-GGGCGAGCGTTTGGGCTTC--------GGCTCGAGCTAGTAGCTTT-TTC-TTTTAAACCCCTTCTTTAA--TTACTGAA--ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATATGC-CAGACGTGAAGTGTCTTGC--TAGCGGT------------------CTTTCGAGTCTGC-CGGCGAGTCCTTTGAAATGTACTGAACTGTACTCTCTCTTTGCTCGAAAAGCG-TGGCGTT--GCTGGTTGTGGAGGCTGCC-CGTATGGCCAGTCGG---CGACCGGTTTGTTAGCTGTAGTATATACTGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATCTGCTTATTGGGTACTTTTCCTGCTATT--GGCGGT---ACGAACTGGTGAACCGTAGCTGTGTGGAGCT-TGGCTTTTGAATCGGCTTTGCT--T-GCGAAGTAGAGTGGCGGCT--------------TCGGC-TGCCGAGGGG-TCGAT-CCATTTTGGGAAATT--AT-GT-------GTGTGCGGCTTCGTGCTGC---GCGCATCTCAA Phytophthora_hydrogena_44G8_KC249958 CCACACCTAAAAA--CTTTCCACGTGAACTGTCTG------------TGA------TGTTGGGGGCT-----------------GCC------------CTTGGTGGT-GGCTCC-ATCA---AACGAGGCCCTGGGCTGCA------AAGTCGAGGGTAGTAGTTAC--TTGTTGTAAACCCTTTT-GTAATTTTTCTGATC-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGCTTCCTTCCTTCCGTGTAGTCGGTGGC-GGGAACGCGCAGACGTGAAGTGTCTTGC--TGGGCGTGA---------------G------------TCCGGCGAGTCCTTTGAAATGTAAGATACTGTTCT-TCTCTTTGCTGGAAAAGCG-T-GCGTTG-TGTGGTTGTGGAGGCTGCC-GTTGTGGCCAGTCGG---CGACTGATTT-CGTGCTGAGGCGT---GTGGGGAGGAGCTCGATTCGCGGTATGGTTGGCTTCGGCTGAACT-TCTGCTTATGGGGCTGTTTTTCTGCTGTTTCGGCGTT--GCGGGGTCGGTGAACCGTAGTCATGGTGG-CT-TGGCTTTTGAACCGCGCGGCTGTTGCGCGAAGTATGGTGGCTTC---------------------GGCCGAGAGG-ACGAC-CTATTTGGGACGATT--GT----------GC----GGCTTCGTGCT-------GCATCTCAA Phytophthora_hydrogena_46A3_KC249959 CCACACCTAAAAA--CTTTCCACGTGAACTGTCTG------------TGA------TGTTGGGGGCT-----------------GCC------------CTTGGTGGT-GGCTCC-ATCA---AACGAGGCCCTGGGCTGCA------AAGTCGAGGGTAGTAGTTAC--TTGTTGTAAACCCTTTT-GTAATTTTTCTGATC-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGCTTCCTTCCTTCCGTGTAGTCGGTGGC-GGGAACGCGCAGACGTGAAGTGTCTTGC--TGGGCGTGA---------------G------------TCCGGCGAGTCCTTTGAAATGTAAGATACTGTTCT-TCTCTTTGCTGGAAAAGCG-T-GCGTTG-TGTGGTTGTGGAGGCTGCC-GTTGTGGCCAGTCGG---CGACTGATTT-CGTGCTGAGGCGT---GTGGGGAGGAGCTCGATTCGCGGTATGGTTGGCTTCGGCTGAACT-TCTGCTTATGGGGCTGTTTTTCTGCTGTTTCGGCGTT--GCGGGGTCGGTGAACCGTAGTCATGGTGG-CT-TGGCTTTTGAACCGCGCGGCTGTTGCGCGAAGTATGGTGGCTTC---------------------GGCCGAGAGG-ACGAC-CTATTTGGGACGATT--GT----------GC----GGCTTCGTGCT-------GCATCTCAA Phytophthora_hydrogena_46A4_KC249960 CCACACCTAAAAA--CTTTCCACGTGAACTGTCTG------------TGA------TGTTGGGGGCT-----------------GCC------------CTTGGTGGT-GGCTCC-ATCA---AACGAGGCCCTGGGCTGCA------AAGTCGAGGGTAGTAGTTAC--TTGTTGTAAACCCTTTT-GTAATTTTTCTGATC-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGCTTCCTTCCTTCCGTGTAGTCGGTGGC-GGGAACGCGCAGACGTGAAGTGTCTTGC--TGGGCGTGA---------------G------------TCCGGCGAGTCCTTTGAAATGTAAGATACTGTTCT-TCTCTTTGCTGGAAAAGCG-T-GCGTTG-TGTGGTTGTGGAGGCTGCC-GTTGTGGCCAGTCGG---CGACTGATTT-CGTGCTGAGGCGT---GTGGGGAGGAGCTCGATTCGCGGTATGGTTGGCTTCGGCTGAACT-TCTGCTTATGGGGCTGTTTTTCTGCTGTTTCGGCGTT--GCGGGGTCGGTGAACCGTAGTCATGGTGG-CT-TGGCTTTTGAACCGCGCGGCTGTTGCGCGAAGTATGGTGGCTTC---------------------GGCCGAGAGG-ACGAC-CTATTTGGGACGATT--GT----------GC----GGCTTCGTGCT-------GCATCTCAA Phytophthora_hydropathica_5D1_EU583793 CCACACCTAAAAA--CTTTCCACGTGAACTGTCTG------------TGA------TGTTGGGGGCT------------GTCTGCCT------------GTTGGCGGC-GGCTCC-ATCA---AACGAGGCTCTGGGCTGCA------AAGTCGAGGGTAGTAGTTAC--TTTTTGTAAACCCTTCCTATA--TTTTCTGATC-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGC-GGGGACGCGCAGACGTGAAGTGTCTTGC--TGGCCGTTC---------------------------GGCCGGCGAGTCCTTTGAAATGTAAGATACTGTTCT-TCTCTTTGCTGGAAAAGCG-T-GCGTTG-TGTGGTTGTGGAGGCTGCC-GTTATGGCCAGTCGG---CGACTGATTT-CGTGCTGAGGCGT---GTGGAGAGGAGCTCGATTCGCGGTATGGTTGGCTTCGGCTGAACT-TCTGCTTATGGGGCTGTTTTTCTGCTGTTTCGGCGTG--GCGGGGTCCGTGAACCGTAGTCATAGTGG-CT-TGGCTTTTGAACCGTGCGACTAGTGCGCGAAGTATGGTGGCTTC---------------------GGCCGAGAGG-ACGAC-CTATTTGGGACGATT--GT----------GC----GGCTTCGTGCT-------GCATCTCAA Phytophthora_ilicis_CBS114348_JX524158 CCACACCTAAAAA--CTTTCCACGTGAACTGTATCGAAC-AACTAGTTGGGGGTCTTGTTTGGCGT-GCGGCTGCT-------------TCGGTA-GCTGCTGCTAGGCGAGCCCTATCA--CGGCGAGCGTTTGGACTTC--------GGTCTGAGCTAGTAGCTAT-TTT---TTAAACCCATTCTTTAA--T-ACTGATT-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGACGC-CAGACGTGAAGTGTCTTGC--GGCGAAT-------------------TTTCGAATTTG--CTGTGAGTCCTTTGAAATGTACTGAACTGTACT-TCTCTTTGCTCGAAAAGCG-TGGCGTT--{GT}CTGGTTGTGGAGGCTGCC-CGCGTGGCCAGTCGG---CGACCGGTTTGTCTGCTGTGGCGTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTAGCTTCGGCTGAACAA-GCGCTTATTGGATGTTCTTCTTGCTGT---GGCGTG---ATGGACTGGTGAACCGTAGCTATGTGTGGCT-TGG{CT}TTTTGAATCGGCTTTGCTG-TTGCGAAGTAGAGTGGCGGCT--------------TCGGC-TGTCGAGGG--TCGAT-CCATTTGGGAAATTT--GT----------GTGTATGACTTCG-GTTGT---ATGCATCTCAA Phytophthora_infestans_2C_KC733443 CCACACCTAAAAA--CTTTCCACGTGAACCGTTTCAACCCAA-TAGTTGGGGGTCTTACTTGGGCG-GCGGCTGCTGGCTTTATT---GCTGGCG-GCTACTGCTGGGCGAGCCCTATCAAAAGGCGAGCGTTTGGACTTC--------GGTCTGAGCTAGTAGCTTT-TTTATTTTAAACCCTTTACTTAA--T-ACTGATT-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAACAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGATGC-CAGATGTGAAGTGTCTTGC--GGTTGGT-------------------TTTCGGACCGA--CTGCGAGTCCTTTTAAATGTACTAAACTGTACT-TCTCTTTGCTCCAAAAGTGGTGGCATT--GCTGGTTGTGGACGCTGCT-ATTGTAGCGAGTTGG---CGACCGGTTTGTCTGCTGCGGCGTT-AATGGAGAAATGCTCGATTCGTGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGGTGATTTTCCTGCTGT---GGCGTG---ATGGACTGGTGAACCATGGCTCTTTA--GCT-TGGCATTTGAATCGGCTTTGCTG-TTGCGAAGTAGAGTGGCGGCT--------------TCGGC-TGCCGAGGG--TCGAT-CCATTTGGGAAATGT---T----------GTGTA---CTTCG-GT------ATGCATCTCAA Phytophthora_insolita_PMC5_GU111612 CCACACCTAAAAA--CTGTCCACGTGAACTGTGTCGATG-------TTGGGGCG--TGCTGGGCGTGCGTGTGTGTGTGGCTTCGGCCGCGTGCGTGCGCGTGTTCGGTTGTGCTCATCA---AACGAGGAGGCGGGTCGCA------AGGCCTG{CT}GTTCTTTGTTAC---TGTTTTAAATCCTTCT--TA--TACACTGATT-GTACTGTGGGGACGAAAGTCTCTGCTTTGAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATGAAACTTGGCTTCCTTCCTTCCGTGTAGTCGGTGGC-GGGAACGCTCAGACGTGAAGTGTCTTGCCTTGGCAATTT-------------------GTAGGTTGTTGTGGCGAGTCCTTTGAAATGTAGGACG-TGTG-T-TCTCTTTGCTGGAAAAGCG-T-GTGGCG-CGTGGTTGTGGAGGCTGCC-TGTGTGGCCAGTCGG---CGACTGATTT-CGTGCTGATGCGT---GCGGAGAGCGGTTCGATTCGCGGTATGGTTGGCTTCGGCTGATTT-TCTGCTTATTGGGTTGCTGT-TTGCTGCGTCGGCGTTT-GCGGGGTCGGTGAACCGTAGCTGCGTTGGGCT-TGGCTTCTGAACTGTGT-GCTGTGCTGCGAAGTATGGTGGCTGCGTGTGCCTTGTGGTTCGCGC-GGCCGAGAGA-CTGTCACCATTTGGGAAGTTT--GT----------GTCGTCGGCCTCGGCCGGT----GGCATCTCAA Phytophthora_irrigata_23J7_EU334634 CCACACCTAAAAA--CTTTCCACGTGAACTGTCTG------------TGA------TGTTGGGGGC--------------------C------------GCTGGTC---GGCTCC-ATCA---AACGAGGCTCTGGGCTGCA------AAGTCGAGGGTAGTAGTTAC-TTTTTTGTAAACCCTTTTTACTATTTT-CTGATG-ATACTGTGGGGACGAAAGTCTCTGCTTTGAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATGAACTTTGTCTTCCTTCCTTCCGTGTAGTCGGTGGC-GGGGACGCGCAGACGTGAAGTGTCTTGC--TGGTCATTT-----------------TGTAAGAGATGGCAGGCGAGTCCTTTGAAATGTAAGATACTGTTCT-TCTCTTTGCTGGAAAAGCG-T-GCGTTG-TGTGGTTGTGGAGGCTGCC-GTTGTGGCCAGTCGG---CGACTGATTT-CGTGCTGAGGCGT---GTGGAGAGGAGGTCGATTCGCGGTATGGTTGGCTTCGGCTGAACT-TCTGCTTATGGGTCTGTTTT-CTGCTGTTTTGGCGTG--GCGGGGTCGGTGCACCGTAGTCATGGCGG-CT-TGGCTTTTGAACCGCGCAGGTGTTGCGCGAAGTATGGTGGCTTG---------------------TGCCGAGAGG-ACGAC-CTATTTGGGACAATT--GT----------GC----GGCTTTTGGCT-------GCATCTCAA Phytophthora_macrochlamydospora_UQ778_KC733445 CCACACCTAAAAC--TTTTCCACGTGAACCGTATTT----------TTGA------CGTTGGGGACTCCTG-------------------------GCTTCGGCCGGTTGAGACCTATCAC---GCGACCGCTCGGGCTGAA------AAGTCGGGGCCAGTAGCC----TTTTTTTAAACCCATTCCGAAC--TACTGAACC-ATACTGTGGGGACGAAAGTCCTTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATGAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGACGTGAAGTGTCTTGCGGCGGCGGC--------------------TTCGGCCGGCTGCTGCGAGTCCTTTGAAATGTAAGAC-CTGTTCT-TCTCTTTGCCCGAAAAGCG-TTGCGTGAGTGTGGTTGTGGAGGCTGCCGTTTGCGGCATGTCGG---CGACTGATTT-CGTGCTGAGGCGT---GTGGGGAGAGGCTCGATTCGCGGTATGGTTGGCTTCGGCTGAACT-TCTGCTTATTGGTCTTTTTT-TCGCGGCTTTGGCGTTTTGCGGGGTCGGTGTACCGTAGCTGCGGGTGGCT-TGGCCTTTGAACCGTGTTCGTGCGGAGCGAAGTAAGGTGGGCGTGACTGTAGTG------TTAT-GGCCGAGGGGGACGCAACCATTTGGGAAAGTAGTGCTTTTCTGCCGGCTTTGGGGCTGGCGGGGC----TGCATCTCGA Phytophthora_meadii_CBS21988_HQ643268 CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCTTTTAGTTGGGGGTGTTGCTTGG---------CATT---------------------TTGCTG--AGCCGCGCCCTATCA--TGGCGAATGTTTGGACTTC--------GGTCTGGGCTAGTAGCTTT-TTG--TTTTAAACCATTTAACAA--T-ACTGATT-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATGTGC-CAGATGTGAAGTGTCTTGC--GGTTTGTGT---------------GCCTTCGGGCCGAGGCTGCGAGTCCTTTGAAATGTACTGAACTGTACT-TCTCTTTGCTCGAAAAGCG-TGGTGTT--GCTGGTTGTGGAGGCTGCC-TGCGTGGCCAGTCGG---CGACCGGTTTGTCTGCTGCGGCGTTTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGTATGCTTTTCCTGCTGT---GGCGTG---ATGGGCTGGTGAACCGTAGCTGTGTGTGGCT-TGGCTTTTGAATCGGCTTTGCTG-TTGCGAAGTAGAGTGGCGGCT--------------TCGGC-TGTCGAGTG--TCGAT-CCATTTTGGGAACTT--TT----------GTGTGCGCTTTCG-AGT-----GTGCATCTCAA Phytophthora_parsiana_SUC25_KC733446 CCACACCTAAAAA--CTTTCCACGTGAACTGTCTG------------TGA------TGTTGGGGGCCT-----------GTCTGCCT------------GTTGGCGGGCGGCTCC-ATCA---AACGAGGCCCTGGGCTGAA------AAGTCGAGGGTAGTAGTTAC--TTTTTGTAAACCCTTAC-ACAACCTTTCTGATC-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTACGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGC-GGGGACGCGCAGACGTGAAGTGTCTTGC--TGGGCTTTG--------------------------TGGCCGGCGAGTCCTTTGAAATGTAAGATACTGTTCT-TCTCTTTGCTGGAAAAGCG-T-GCGCTG-TGCGGTTGTGGAGGCTGCC-GTTGTGGCCAGTCGG---CGACTGATTT-CGTGCTGAGGCGT---GTGGAGAGGAGCTCGATTCGCGGTATGGTTGGCTTCGGCTGAACT-TCTGCTTATGGGGCTGCTTGTCTGCTGCTTTGGCGTG--GCGGGGTCGGTGAACCGTAGTCATTTCGG-CT-TGGCTTTTGAACTGCGCGGGCGCTGCGCGAAGTATGGTGGCTTC---------------------GGCCGAGAGG-ACGAC-CTATTTGGGACGATT--GT----------GC----GGCTTCGTGCT-------GCATCTCAA Phytophthora_pinifolia_CMW26668_EU725806 CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCCTTAAATTTGGGGGCTTGCTCGGCGGCGTGCGTGCTGGCCTGTAATGGGTCGGCGTGCTGCTGCTGGGTAGGCTCTATC-----GCGAGCGTTTGGGCTTC--------GGCTCGAGCTAGTAGCTAT-TAA-TTTTAAACCCTTTCTTAAA--T-ACTGAAC-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATATGC-CAGACGTGAAGTGTCTTGC--TAGCGGT------------------CTTTCGAGTCTGC-CGGTGAGTCCTTTGAAATGTACTGAACTGTACTCTCTCTTTGCTCGAAAAGCG-TGGCGTT--GCTAGTTGTGGAGGCTGCC-CGTGTGGCCAGTCGG---CGACCAGTTTGTTAGCTTTGGCGTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTAAACAATCTGCTTATTGGGTGCTTTTTCAGTCATT--TGCGGT---ACGAACGGGTGAACCGTAGCTGTGTGGTGCT-TGGCTTTTGAACCGGCTTTGCT--TTGCGAAGTAGGGTGGCGGCT--------------TCGGC-TGTCGAGGGG-TCGAT-CCATTTTGGGAAACT--TT-GT-------GTGTGCGGCTTCGTGCTGC---GCGCATCTCAA Phytophthora_polonica_UASWS0198_DQ396410 CCACACCTAAAAA--CTGTCCACGTGAACTGTGCTGAAG---ATGATTGGGGCG--TGCTGGGCGTGCGTGTGCG----GCTTCGGC----TGCGTGCGTGTGTTTGGC-GTGCCCATCA---AACGAGGAGGCGGGTCGCA------AGGCCTGCTTTAGTAGTTAC---TATTTTAAACCCTTTTACTG--TTAACTGAT--ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAAGCCTGGGAGTATGCCTGTATCAGTGTCCGTACAACAACCTTGGCTTCCTTCCTTCCGTGTAGTCGGTGGC-GGGAACGCTCAGACGTGAAGTGTCTTGCGTCAGTAATTT-------------------GTAA-TTGCTAAGGCGAGTCCTTTGAAAAGTAGGACG-TGTTCT-TCTCTTTGCTGGAAAAGCG-TTGCGGTG-CGTGGTTGTGGAGGCTGCC-TGTGTGGCCAGTCGG---CGACTGATTT-CGTGCTGATGCGT---GTGGGGAGTGGTTCGATTCGCGGTATGGTTGGCTTCGGCTGATTT-TCTGCTTATTGGGTCGTTTT-CTGCTGCGTTGGCGTTT-GCGGGGTCGGTGAACCGTAGCTGCGTTGGGCT-TGGCTTTTGAACTGTGT-GCTGTGCTGCGAAGTATGGTGGCTGCGTGCGCCTTCGGGTGCGTGC-GGCCGAGAGA-CGGTCACCATTTGGGAAGTTT--GT----------GCTTTGGGCCTCGGCCTTT----GGCATCTCAA Phytophthora_quininea_CBS40648_DQ275189 CCACACCTAAAAC--TTT-CCACGTGAACCGTATTT----------TTGA------CGTTGGGGACTCCTG-------------------------GCTTCGGCCGGTTGAGACCTATCAC---GCGACCGCTCGGGCTGAA------AAGTCGGGGCCAGTAGCC----TTTTTT-AAACCCATTCCGAAC--TACTGAACC-ATACTGTGGGGACGAAAGTCCTTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGACGTGAAGTGTCTTGCGGCGGCGGC--------------------TTCGGCCGGCTGCTGCGAGTCCTTTGAAATGTAAGAC-CTGTTCT-TCTCTTTGCCCGAAAAGCG-TTGCGTGAGTGTGGTTGTGGAGGCTGCCGTTTGCGGCATGTCGG---CGACTGATTT-CGTGCTGAGGCGT---GTGGGGAGAGGCTCGATTCGCGGTATGGTTGGCTTCGGCTGAACT-TCTGCTTATTGGGCTTTTTT-CC-TGGCTTTGGCGTTTTGCGGGGTCGGTGTACCGTAGCTGCGGGTGGCT-TGGCCTTTGAACCGTATTCGTGCGGAGCGAAGTAAGGTGGCCGTGACTGTAGTG------TTAT-GGCCGAGGGGGACGCAACCATTTGGGAAACTACTGCTTTTCTGCCGGCTTCGGG-CTGGCGGGGC----TGCATCTCAA Phytophthora_rubi_CBS96795_HQ643340 CCACACCTAAAAA--CTTTCCACGTGAACCGTATCAACCCACTTAGTTGGGGGCCTGTCCTGGCGG-CTGGCTGTCGATGTCAAAGTTGACGGCT-GCTGCTGTGTGTCGGGCCCTATCA--TGGCGAGCGTTTGGGTCCCTCTCGGGGGAACTGAGCCAGTAGCCCT-TTTCTTTTAAACCCATTCTTGAA--T-ACTGAAT-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGGGGACGC-CAGACGTGAGGTGTCTTGC--GGGTGGC-------------------CTTCGGGCTGC--CTGCGAGTCCCTTGAAATGTACTGAACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTT--GTTGGTTGTGGAGGCTGCC-TGTGTGGCCAGTCGG---CGACCGGTTTGTCTGCTGCGGCGTTTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGACGTTCTTCCTGCTGT---GGCGGT---ACGGATCGGTGAACCGTAGCTGTGCGAGGCT-TGGCCTTTGAACCGGCGGTGTTGGTCGCGAAGTAGGGTGGCGGCT--------------TCGGC-TGTCGAGGGG-TCGAT-CCATTTGGGAACT-T--GTGTCTTCTGCGGCGCGCTTCGGTGTGCTGCGGGTGGCATCTCAA Pythium_aphanidermatum_P1779_GU983641 CCACACCATAAAAA-CTTTCCACGTGAACCGTTGAAA----------TCA------TGTTCTGTGC-------------------------------TCTCTTTCGGGAGGGCTG--------AACGAAGG--TGGGCTGCTT------AATTGTAGTCTGCCGATGT--ATTTTTCAAACCCATTTACCTA--ATACTGATCTATACTCCAAAAACGAAAGTTTATGGTTTTAATCT-ATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCACATTGCACTTTCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGCCTTTCTTT-TTCTGTGTAGTCAG-GGAGAGAGATGGCAGAATGTGAGGTGTCTCGC--TGGCTCCCT----------------TTTCGGAGGAGAAGACGCGAGTCCCTTTAAATGTACGTT--CGCTCT-TTCTTGTGTCTAAGATGAAGT-GTGATTCTCGAATCGCGGTGATCTGTTTGGATCGCTTTGCGCATTTGGGCGACTT--CGGTTAGGACATT-AAAGGAAGCAACCTCTATTGGCGGTATGTTAGGCTTCGGCCCGACGTTGCAGCTGACAGAGTGTGGTTTT-CTGTTCTTTCCTT--------GAGGTGTACCTGAATTGTGTGAGGCAATGGTCTGGGCAAATGGTTGCTGTGTAGTAGGGTTTTGCTGCTCTTGGACGCCCTGTTTTCGGATAGGGTAAAGGAGGCAACACCAATTTGGGACCT---------------GTTTGCAATTTATTGTGAA---CAACTTTCTAA ; END; [ The following blocks are output data for analysis step 11707 ] BEGIN TREES; TITLE Figure.2A_ITS; LINK TAXA = TaxaForAnalysisStep11707; TREE Fig._2A = [&R] ((((((((Phytophthora_andina_EC3421_AY770738:0.0,Phytophthora_infestans_2C_KC733443:0.0)1.0000:0.03707714,Phytophthora_hedraiandra_CBS111725_AY707987:0.0115039)0.9610:0.01614146,(Phytophthora_meadii_CBS21988_HQ643268:0.03654014,Phytophthora_ilicis_CBS114348_JX524158:0.01979527)0.5330:0.00320182)0.5840:0.00930362,Phytophthora_heveae_IMI180616_AF266770:0.02881813)0.5980:0.00762456,(Phytophthora_foliorum_LT192_HQ261560:0.01609514,(Phytophthora_cinnamomi_CBS14422_HQ643189:0.01919695,Phytophthora_rubi_CBS96795_HQ643340:0.00680271)0.9910:0.02519589)0.8650:0.01705028)0.6350:0.01439076,((Phytophthora_gonapodyides_CBS55467_HQ643236:0.0090871,Phytophthora_pinifolia_CMW26668_EU725806:0.0138841)0.6160:0.00793806,Phytophthora_humicola_CBS20081_HQ643243:0.01718326)1.0000:0.03194103)0.9960:0.05538936,(((Phytophthora_aquimorbida_40A6_FJ666127:0.04142362,((((Phytophthora_hydrogena_46A4_KC249960:0.0,Phytophthora_hydrogena_46A3_KC249959:0.0)0.3640:0.0,Phytophthora_hydrogena_44G8_KC249958:0.0)0.9930:0.006471,((Phytophthora_hydropathica_5D1_EU583793:0.00869321,Phytophthora_parsiana_SUC25_KC733446:0.02534487)0.5480:0.00452928,Phytophthora_irrigata_23J7_EU334634:0.02868115)0.4040:0.00162439)0.7510:0.00566949,Phytophthora_chrysanthemi_GF749_AB437135:0.01818805)0.6010:0.00952276)0.9960:0.02845089,(Phytophthora_insolita_PMC5_GU111612:0.03761925,Phytophthora_polonica_UASWS0198_DQ396410:0.02224727)1.0000:0.04812285)0.9480:0.02427355,(((Phytophthora_captiosa_310C_DQ297402:0.00316862,Phytophthora_fallax_310L_DQ297391:0.00155777)1.0000:0.02784397,Phytophthora_constricta_CBS125801_HQ013225:0.02123366)0.9950:0.05013404,(Phytophthora_macrochlamydospora_UQ778_KC733445:0.00940419,Phytophthora_quininea_CBS40648_DQ275189:0.00330514)1.0000:0.05420676)0.9080:0.02494753)0.6410:0.02152135)0.0000:0.12031724,Pythium_aphanidermatum_P1779_GU983641:0.26024415); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64545] END;