#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 06, 2025; 8:26 GMT TreeBASE (cc) 1994-2008 Study reference: Wolfe J.M., & Hegna T.A. 2013. Testing the phylogenetic position of Cambrian pancrustacean larval fossils by coding ontogenetic stages. Cladistics, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13368] [ The following blocks are input data for analysis step 11979 ] BEGIN TAXA; TITLE TaxaForAnalysisStep11979; DIMENSIONS NTAX=23; TAXLABELS Argulus_japonicus_Instar_1 Baccalaureus_falsiramus_Nauplius_1 Bredocaris_admirabilis_Instar_1 Darwinula_stevensoni_Instar_1 Derocheilocaris_remanei_Instar_1 Eubranchipus_grubii_Stage_1 Glomeris_marginata_Adult Hesslandona_angustata_Instar_1 Hutchinsoniella_macracantha_Instar_1 Klausmuelleria_salopensis Labidocera_aestiva_Nauplius_1 Lepas_anatifera_Nauplius_1 Manawa_staceyi_Instar_2 Nebalia_sp._Stage_g Orchestia_cavimana_Stage_1 Pleomothra_apletocheles_Nauplius_1 Porcellio_scaber_Stage_14 Rehbachiella_kinnekullensis_A_Instar_2_l2a Rehbachiella_kinnekullensis_B_Instar_4_l4b Sacculina_carcini_Nauplius_1 Triops_cancriformis_Stage_1 Vargula_hilgendorfii_Instar_1 Yicaris_dianensis_Instar_1 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M18997] TITLE Early_Semaphoronts; LINK TAXA = TaxaForAnalysisStep11979; DIMENSIONS NCHAR=146; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5 6 7 8 9 E F I J L O P Q X" MISSING=? GAP= -; CHARSTATELABELS 1 Antennule / absent rudimentary_limb_bud present, 2 'Antennule, with a secondary annulated branch (flagellum)' / flagellum_absent present, 3 'Antennule, with a tertiary branch (flagellum)' / tertiary_flagellum_absent present, 4 'Antennule, with a scale' / absent present, 5 'Antennule, number of annulations' / not_annulated two three four_ five six seven eight_ nine ten_or_more, 6 'Antennule, extent of setation' / 'setation setae/sensilla not confined to tip' 'setae/sensillae confined to tip' No_setae, 7 'Antennule, insertion of anterior setae' / seta_absent setae_insert_medially_ setae_insert_anteriorly, 8 Distinctive_large_seta_on_antennule / large_seta_absent present, 9 Aesthetascs_on_antennule / hundreds_ one_on_every_or_almost_every_antennular_segment only_a_few_aesthetascs_situated_distally_on_the_antennule No_aesthetascs, 10 'Antennule, shape ' / 'shape elongate, tubular' as_small_buds 'as horn-like structure' with_proximal_hook as_chelicerae Sacculina_Cyprid, 11 'Antennule, positioning' / remain_separate 'basally close to each other in "''V"''-shaped pattern', 12 Antennule_with_an_attachment_disc_covered_with_cuticular_villi / absent present, 13 'Antennule with (motile) distal claw for mechanical attachment' / absent present, 14 Antenna / absent rudimentary_limb_bud present, 15 'Antennae, length of protopod' / length_of_protopod_less_than_half_total_length_of_limb more_than_half_total_length_of_limb protopod_undifferentiated, 16 'Antenna with masticatory/arthritic/gnathobasic process' / absent present, 17 'Antenna, morphology of masticatory process' / 'cluster of about 2-5 spines' divided_in_two_branches single_spine 'brush-like fringe of stiff bristles', 18 'Antenna, anterior branch of masticatory process' / 'with brush-like setae' 'with single comb-row' no_visible_setae, 19 Antennal_endopod / absent present, 20 'Antenna, endopod setation' / endopod_setation_not_distal_setation_alone only_distal_setation no_setation, 21 'Second antennae: exopod' / absent present, 22 'Antenna, number of setae on exopod' / many seven six five two None, 23 'Second antennae: basipodite' / with_small_segment_absent present, 24 Antennal_endopod_segments / endopod_not_clearly_divided_into_segments two_clear_segments three_clear_segments four_clear_segments five_segments six_segments Flagellum, 25 'Antennal exopod multi-annulated' / 'not multiannulated or paddle-shaped' multiannulated, 26 'Second antennal exopod paddle-shaped' / 'not paddle-shaped' 'exopod forms a leaf-shaped paddle ', 27 Antennal_exopod_setation_type / no_setae single_row_of_setae_on_inner_surface 'plumose/feathered', 28 'Antenna, segmentation of exopod' / segments_of_same_size_or_gradually_getting_smaller_distally 'one or two small segments proximally, followed by larger segment, again followed by three setae-bearing segments' Original_segmentation_obscurred_by_the_fusion_of_segments, 29 Antenna_with_proximal_endite / absent present, 30 Proximal_endite_on_antenna_is_enlarged_to_form_a_coxa / median_structure coxa, 31 Mandible / absent rudimentary_limb_bud present, 32 'Mandibular endopod (palp)' / absent present, 33 'Mandible, segmentation of endopod' / three_segments_ two_segments segmentation_indistinct one_segment 'none"-coxa only' four, 34 'Mandibular palp: setation of endopod segment 1' / more_than_two_setae two_setae one_seta no_setae, 35 'Mandibular palp as filter screen of >3 setae' / absent present, 36 Mandibular_exopod / absent present, 37 'Mandibular exopod multi-annulated' / 'paddle-shaped or a lamellae-bearing shaft' made_up_of_a_number_of_tubular_articles_, 38 'Mandibular exopod paddle-shaped' / 'multi-annulated or a lamellae-bearing shaft ' 'exopod forms a leaf-shaped paddle ', 39 Exopods_of_mandibular_segments_with_inwardly_directed_setae / absent row_of_setae 'plumose/feathered', 40 'Mandibular exopod with 3-2 setation pattern' / absent present, 41 Mandible_with_proximal_endite / absent present, 42 Proximal_endite_of_mandible_enlarged_to_form_a_coxa / median_structure coxa, 43 Mandibular_coxa_fused_with_basis / separate_coxa_and_basis '"normal" coxal podomere secondarily fused with basis' coxa_only, 44 Mandibular_basis_with_toothed_endite / absent present, 45 Mandibular_gnathal_edge / consisting_of_molar_and_incisor_process_ only_ellipsoid_molar_present number_of_teeth_arranged_in_a_row shovel_with_terminal_teeth 'series of 1-3 long spines' 'none (larval)' '''blade'' with one plumose seta', 46 'Mandible: row of teeth along edge of molar surface' / absent present, 47 Maxillule / absent__ rudimentary_limb_bud present, 48 Maxillular_exopod / absent present, 49 'Maxillular exopod multi-annulated' / 'paddle-shaped or a lamellae-bearing shaft' made_up_of_a_number_of_slightly_flattened_tubular_articles_, 50 'Maxillular exopod paddle-shaped' / 'multi-annulated or a lamellae-bearing shaft ' 'exopod forms a leaf-shaped paddle', 51 Maxillular_exopod_reaching_into_arthrodial_membrane / 'exopod arises from limb stem, does not reach into arthrodial membrane' basipod_not_completely_closed_sclerotised_ring, 52 Maxillular_exopod_modification_as_branchial_plate / absent present, 53 Maxillule_with_proximal_endite / absent present, 54 Maxillular_palp / absent present, 55 Maxillule_differentiated_from_thoracopods / differentiated not_differentiated, 56 'Maxillular modification (Branchiura)' / absent hooks suction_discs, 57 Maxillular_endopod_chelate_ / absent present, 58 Maxilla / absent rudimentary_limb_bud present, 59 Maxillary_exopod / absent present, 60 'Maxillary exopod multi-annulated' / 'paddle-shaped or lamellae-bearing shaft' made_up_of_a_number_of_slightly_flattened_tubular_articles_, 61 'Maxillary exopod paddle-shaped' / 'multi-annulated or a lamellae-bearing shaft ' 'exopod forms a leaf-shaped paddle', 62 Maxillary_exopod_reaching_into_limb_membrane / 'exopod arises from limb stem, does not reach into arthrodial membrane' basipod_not_completely_closed_sclerotized_ring, 63 Maxilla_with_proximal_endite / absent present, 64 Epipodite_on_maxilla / absent present, 65 Maxilla_with_tooth / absent present, 66 Maxilla_as_labium / absent present, 67 'Maxillary palp (labial palp)' / absent composed_of_3_or_4_segments 'short, unsegmented, or replaced by a row of short setae' transformed_into_a_setigerous_plate transformed_into_labella, 68 Maxillary_endopod_chelate / absent present, 69 Maxilla_differentiated_from_thoracopods / differentiated not_differentiated, 70 Labrum / absent present, 71 'Labrum, number of major posterior spines' / none one three four '>four', 72 Labrum_reduced / absent 'present (reduced)', 73 Sternum / unfused fused, 74 Paragnaths / absent present, 75 'Post-cephalic filter feeding apparatus with sternitic food groove' / absent present, 76 'Postmandibular limbs with limb base differentiated as basipod + coxa' / absent present, 77 'Protopodite of post-mandibular limbs elongate, fleshy, extended as numerous soft, setiferous endites ' / absent present, 78 'First thoracopod (sixth limb)' / absent present, 79 First_thoracopod_as_maxilliped / normal transformed_into_maxilliped, 80 Epipodite_on_maxilliped_respiratory / absent present, 81 'Second thoracopod (seventh limb)' / absent present, 82 Seventh_limb_as_cleaning_limb / absent 'present, articulated' 'present, vermiform', 83 'Third thoracopod (eighth limb)' / absent present, 84 Number_of_additional_thoracic_limbs / none one two three four five six seven eight nine_or_more, 85 'Eighth thoracopod modified into small, subspherical appendages' / absent present, 86 'Trunk limbs, dorsal lobe of exopods' / absent small long, 87 'Sixth limb, number of endites' / about_eight six five less_than_five_ 'none/undifferentiated/indistinct' one, 88 Trunk_limbs_with_lobate_endites_formed_by_folds_in_limb_bud / absent present, 89 Thoracopods_with_epipodites / absent present, 90 'Thoracopod epipodites paddle-shaped' / absent present, 91 'Trunk limb tips, developmental direction' / points_ventrally points_laterally, 92 'Intercoxal sclerites on thoracopods 2-6' / absent 'present (as couplers)', 93 Denticles_on_limbs / absent present, 94 Differentiated_pleopods / absent present, 95 Number_of_pleopods / one two 'three (pleopods 1, 2, & 3)' 'three (third to fifth pleopods missing)' four five six, 96 Uropods / absent present, 97 Gonopods / absent gonopods_formed_from_one_pair_of_limbs_in_males 'genitals in both sexes (gonopods) formed from two pairs of limbs', 98 Paired_thoracic_dorsal_setae / Absent present, 99 Annulated_caudal_filament / absent present, 100 'Furcal rami/cerci' / absent present 'present, not multi-annulated (reduced to buds with or without setae)', 101 Furcal_position / 'terminal, in line with anus' posterior_to_anus anterior_to_anus, 102 Furcal_setae / absent present, 103 Telson_shape / round laterally_depressed 'dorso-ventrally depressed', 104 Dorsal_pair_of_telsonal_setae / absent present, 105 Dorsocaudal_spine / absent present, 106 Telson_cleft / absent 'distinct, shallow to almost reaching the base', 107 Caudal_papilla / absent 'present, anteroventrally folded, derived from preanal growth zone', 108 Caudal_process / absent present, 109 Body_segmentation_externally_visible / absent present, 110 Toothed_furrows / absent type_1_with_5_lobes 'type 1 with 4 lobes (forming X-shape)', 111 Tergopleural_outgrowths / absent present, 112 Coxal_plates / absent present, 113 Number_of_somites / three five eight nine 10 11 12 13 14 15 16 18 19 20 21 22 24 25_or_more, 114 'Neck (dorsal) organ' / absent present, 115 Lattice_organs / absent present, 116 Carapace / absent present, 117 Presence_of_headshield / absent present, 118 Headshield_extension / 'develops as a simple posterior extension of the head shield to cover post-cephalic body' headshield_fuses_with_paired_carapace_anlagen_to_cover_postcephalic_limbs 'absent (does not extent to cover post-cephalic body)', 119 Cephalic_shield_continuous_with_free_trunk_dorsum / absent present, 120 Cephalic_shield_with_distinct_facetotectan_ridges / absent present, 121 Carapace_with_distinct_hinge_line / absent 'Dorsal fold or crease (carina) along the midline' 'discrete valves physically separated at the midline (hinge)', 122 Ventral_extent_of_the_carapace / Carapace_partially_covers_limbs Carapace_can_enclose_limbs_with_the_margins_of_the_carapace_meeting_ventrally 'Carapace small (larval)', 123 Dorsal_area_of_bivalved_carapace / with_dorsal_furrow with_interdorsum, 124 Incisur / absent present, 125 Doublure / absent present, 126 'Frontolateral horns/pores' / absent present, 127 Frontal_filaments / absent present, 128 Rostrum / absent present_and_fused_to_head present_and_hinged_to_head, 129 Carapace_adductor_muscles / absent present, 130 Postoral_adductor_muscle / absent present, 131 'Carapace molt retention (i.e. ''growthlines'')' / absent present, 132 Corpora_allata / absent present, 133 Wings / absent present, 134 Number_of_median_eyes / none one two three four, 135 'Naupliar eye, number of ocelli' / three four, 136 Number_of_lateral_eyes / none one two, 137 Number_of_compound_eyes / none two, 138 Internalized_compound_eyes / absent present, 139 'Head/mouth orientation' / 'prognathous, mouth directed anteroventrally' 'hypognathous, mouth directed ventrally' mouth_directed_posteriorly, 140 Gut / present absent_or_reduced, 141 Bellonci_organ / absent present, 142 Dorsal_heart_with_segmental_ostia_and_pericardial_sinus / absent present, 143 'Role of serosa (= cuticle secreting membrane) in definitive dorsal closure (formation of dorsal body wall)' / serosa_and_embryo_contribute_to_definitive_dorsal_closure 'provisional dorsal closure (serosa degenerates without contributing to definitive dorsal closure)', 144 Differentiation_of_amnion_as_provisional_dorsal_closure_of_embryo / absent present, 145 'Blastodermal cuticle (cuticular egg envelope)' / absent present, 146 'Ectoteloblasts (forming part of metanaupliar/egg-naupliar region of germ band)' / absent present_, ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 ] [ . . . . . . . . . . . . . . ] Argulus_japonicus_Instar_1 2000200033000200--1010?20022??21300-----??????20----??01?20---?0000?0?????0?010-0-00-04-0-0-00-00002?1200?001000??01110000-0000000000??010?0?????? Baccalaureus_falsiramus_Nauplius_1 2000?0?0?0000200--1013100010??212-011010???05-0----------0-----------101?00--0--0-00---------0-00002?1200?010000???01000-----000??-001?00-?1?????? Bredocaris_admirabilis_Instar_1 200090?1?0000200--1010??10101121000110101100??11-----0-000-----------100??0000--0-00--------10-00001010000010000?10010?0----000010-?00-010???????? Darwinula_stevensoni_Instar_1 2000400030000200--111512000211210000----1100300----------0-----------1????0000--0-00------?-00-0000120?000000000??010-0-21-010001?000??00-2000???? Derocheilocaris_remanei_Instar_1 20007000?0000201101010?2101011210?0110101100??20----1?-000-----------100??0?00--0-00---------0-00002?100100011002?0010-0-----00000-00??00-???????? Eubranchipus_grubii_Stage_1 20000100300002112011100010100-210100--0-1100??0---------00---------0-100?00000--0-00-0-00---?0-00?010000000010008100120------000-0-00100??2??????? Glomeris_marginata_Adult 2000??00300000----------------204--0----???00-20----?100020---?00??00100??0?010-10190-400-?000-0?000--000?001000F00012-------0000?-000-21000010010 Hesslandona_angustata_Instar_1 2000?100?10002?1??101?1110101121110110101100??21100010-000-----------100110?00--0-00------?-?0-0?000--0000000000?001??0021101000??0?02?00-???????? Hutchinsoniella_macracantha_Instar_1 20005010200002010-10100110001121220110001100201101?010-001---??0-000-100??0010--0-00------?-00-000010120010010102?0010-0----0000?0-000-00-2?0????? Klausmuelleria_salopensis 2000???0?10002?10?1?1?12101011210?01101?1100??21100010-000-----------100110000--0-00---????-?0-0?00????00?000000?001??0011-01000??000??00-???????? Labidocera_aestiva_Nauplius_1 2000200030?002?12-1012?010100-2120011010???05-0----------0-----------140??0--0--0-00------?--0-0000101000?000000??00??-0-----00000-00??0??20??000? Lepas_anatifera_Nauplius_1 2000000030?00200--1013100010??212001101????04?0---------?0---------?-100?00--0--0-00------?--0-00001?0?000010000?0?01000-----110??-003?00-2?0????? Manawa_staceyi_Instar_2 200030?0?00002?0--1?1??400????210?01???0???0??1----------1-----------101??0?-0--0-00---------0-00000--?00?00?000??010-0-12-00000??0000-00-2??????? Nebalia_sp._Stage_g 2000020031000220--?2?50???0?0-202--?----0-?05-10---000?0010---000000?101?000010-1015004?0-1001200001000000001000I?000--------00110-000-00-2??????? Orchestia_cavimana_Stage_1 1--------1---1----------------1---------------0----------0-----------0--000--0--0-00---------0-00000---00-100000?1000--------000??-000-0???0?????0 Pleomothra_apletocheles_Nauplius_1 2000??00?00002????1?1?????????2???????????????0----------0-----------0--??0--0--0-00------0-10-00000--?0000000000?00??-?-----00000-000-00-21?????0 Porcellio_scaber_Stage_14 20002200310002?0--120-?5----??1---------------2??????00002?????000000100110?011010150040100001600000--0000001000F00012-0-----000??-000-00-?0?????0 Rehbachiella_kinnekullensis_A_Instar_2_l2a 20009??0?00002012?10100310100-215001101?11014-0----------0-----------100100--0--0-00---------0-0000200001000000011001?-0-----000?0-00??0102??????? Rehbachiella_kinnekullensis_B_Instar_4_l4b 200090?0?00002010-10110310100-215001101?11002-21010001-0011??0000000-100??01?0--0-00---------0-00001010000001000?1001?-0-----000?0-00??0102??????? Sacculina_carcini_Nauplius_1 2000?100?0?002?0--1?1???10????21?--110?0???05-0----------0-----------1???00--0--0-00---------0-00001?00000000000???010-0-----110??-00??00-???????? Triops_cancriformis_Stage_1 20000100?000021122111300101011211100----11005-0---------00---------0-100100--0--0-00------?--0-00000--00000010002101110002-00000?0000110??2??????? Vargula_hilgendorfii_Instar_1 2000501020000210--11101210001121000100001100?02100?0??0002?00??110000100??00010-0-00--300-?-00-0000110?0000000003?010-0-21-110001?0001?01020?????? Yicaris_dianensis_Instar_1 20003?00?10002????1???1?1010??20---110101100??210100100001?0101100000???110010--0-00---?--?-00-0?000--0000?01000??0010?0----0000-?-?0??010???????? ; END; [ The following blocks are output data for analysis step 11979 ] BEGIN TREES; TITLE Early_Semaphoronts; LINK TAXA = TaxaForAnalysisStep11979; TREE implied10_NT = [&R] (Glomeris_marginata_Adult,((Argulus_japonicus_Instar_1,((Labidocera_aestiva_Nauplius_1,((Bredocaris_admirabilis_Instar_1,((Orchestia_cavimana_Stage_1,Manawa_staceyi_Instar_2,Pleomothra_apletocheles_Nauplius_1,Baccalaureus_falsiramus_Nauplius_1)27,(Lepas_anatifera_Nauplius_1,Sacculina_carcini_Nauplius_1)24)23)23,(Rehbachiella_kinnekullensis_A_Instar_2_l2a,(Rehbachiella_kinnekullensis_B_Instar_4_l4b,(Hutchinsoniella_macracantha_Instar_1,(Yicaris_dianensis_Instar_1,(Derocheilocaris_remanei_Instar_1,((Hesslandona_angustata_Instar_1,Klausmuelleria_salopensis)59,(Vargula_hilgendorfii_Instar_1,Darwinula_stevensoni_Instar_1)58)39)23)23)23)24)25)7)0,(Eubranchipus_grubii_Stage_1,Triops_cancriformis_Stage_1)65)21)85,(Nebalia_sp._Stage_g,Porcellio_scaber_Stage_14)75)100); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr67374] END; BEGIN TREES; TITLE Early_Semaphoronts; LINK TAXA = TaxaForAnalysisStep11979; TREE implied1_traditional = [&R] (Glomeris_marginata_Adult,((Eubranchipus_grubii_Stage_1,(Triops_cancriformis_Stage_1,(Argulus_japonicus_Instar_1,Labidocera_aestiva_Nauplius_1,Orchestia_cavimana_Stage_1,Pleomothra_apletocheles_Nauplius_1,(Bredocaris_admirabilis_Instar_1,Baccalaureus_falsiramus_Nauplius_1)10,((Yicaris_dianensis_Instar_1,(Manawa_staceyi_Instar_2,((Hesslandona_angustata_Instar_1,Klausmuelleria_salopensis)48,(Vargula_hilgendorfii_Instar_1,Darwinula_stevensoni_Instar_1)33)24)3)7,(Lepas_anatifera_Nauplius_1,Sacculina_carcini_Nauplius_1)45)17,(Rehbachiella_kinnekullensis_A_Instar_2_l2a,Derocheilocaris_remanei_Instar_1)46,(Rehbachiella_kinnekullensis_B_Instar_4_l4b,Hutchinsoniella_macracantha_Instar_1)9)6)13)86,(Nebalia_sp._Stage_g,Porcellio_scaber_Stage_14)75)100); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr67369] END; BEGIN TREES; TITLE Early_Semaphoronts; LINK TAXA = TaxaForAnalysisStep11979; TREE equal_traditional = [&R] (Glomeris_marginata_Adult,((Bredocaris_admirabilis_Instar_1,Rehbachiella_kinnekullensis_A_Instar_2_l2a,Rehbachiella_kinnekullensis_B_Instar_4_l4b,Yicaris_dianensis_Instar_1,Argulus_japonicus_Instar_1,Hutchinsoniella_macracantha_Instar_1,Labidocera_aestiva_Nauplius_1,Orchestia_cavimana_Stage_1,Derocheilocaris_remanei_Instar_1,Manawa_staceyi_Instar_2,Pleomothra_apletocheles_Nauplius_1,Baccalaureus_falsiramus_Nauplius_1,Lepas_anatifera_Nauplius_1,Sacculina_carcini_Nauplius_1,((Hesslandona_angustata_Instar_1,Klausmuelleria_salopensis)61,(Vargula_hilgendorfii_Instar_1,Darwinula_stevensoni_Instar_1)44)26,(Eubranchipus_grubii_Stage_1,Triops_cancriformis_Stage_1)58)73,(Nebalia_sp._Stage_g,Porcellio_scaber_Stage_14)60)100); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr67368] END; BEGIN TREES; TITLE Early_Semaphoronts; LINK TAXA = TaxaForAnalysisStep11979; TREE implied10_traditional = [&R] (Glomeris_marginata_Adult,((Argulus_japonicus_Instar_1,((Labidocera_aestiva_Nauplius_1,((Bredocaris_admirabilis_Instar_1,((Orchestia_cavimana_Stage_1,Manawa_staceyi_Instar_2,Pleomothra_apletocheles_Nauplius_1,Baccalaureus_falsiramus_Nauplius_1)27,(Lepas_anatifera_Nauplius_1,Sacculina_carcini_Nauplius_1)24)23)23,(Rehbachiella_kinnekullensis_A_Instar_2_l2a,(Rehbachiella_kinnekullensis_B_Instar_4_l4b,(Hutchinsoniella_macracantha_Instar_1,(Yicaris_dianensis_Instar_1,(Derocheilocaris_remanei_Instar_1,((Hesslandona_angustata_Instar_1,Klausmuelleria_salopensis)59,(Vargula_hilgendorfii_Instar_1,Darwinula_stevensoni_Instar_1)58)39)23)23)23)24)25)7)0,(Eubranchipus_grubii_Stage_1,Triops_cancriformis_Stage_1)65)21)85,(Nebalia_sp._Stage_g,Porcellio_scaber_Stage_14)75)100); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr67373] END; BEGIN TREES; TITLE Early_Semaphoronts; LINK TAXA = TaxaForAnalysisStep11979; TREE implied100_traditional = [&R] (Glomeris_marginata_Adult,((Argulus_japonicus_Instar_1,((Labidocera_aestiva_Nauplius_1,((Bredocaris_admirabilis_Instar_1,((Orchestia_cavimana_Stage_1,Manawa_staceyi_Instar_2,Pleomothra_apletocheles_Nauplius_1,Baccalaureus_falsiramus_Nauplius_1)26,(Lepas_anatifera_Nauplius_1,Sacculina_carcini_Nauplius_1)23)21)21,(Rehbachiella_kinnekullensis_A_Instar_2_l2a,(Rehbachiella_kinnekullensis_B_Instar_4_l4b,(Hutchinsoniella_macracantha_Instar_1,(Yicaris_dianensis_Instar_1,(Derocheilocaris_remanei_Instar_1,((Hesslandona_angustata_Instar_1,Klausmuelleria_salopensis)60,(Vargula_hilgendorfii_Instar_1,Darwinula_stevensoni_Instar_1)57)34)21)21)21)22)22)7)0,(Eubranchipus_grubii_Stage_1,Triops_cancriformis_Stage_1)71)26)81,(Nebalia_sp._Stage_g,Porcellio_scaber_Stage_14)70)100); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr67375] END; BEGIN TREES; TITLE Early_Semaphoronts; LINK TAXA = TaxaForAnalysisStep11979; TREE implied1_NT = [&R] (Glomeris_marginata_Adult,((Eubranchipus_grubii_Stage_1,(Triops_cancriformis_Stage_1,(Argulus_japonicus_Instar_1,Labidocera_aestiva_Nauplius_1,Orchestia_cavimana_Stage_1,Pleomothra_apletocheles_Nauplius_1,(Bredocaris_admirabilis_Instar_1,Baccalaureus_falsiramus_Nauplius_1)10,((Yicaris_dianensis_Instar_1,(Manawa_staceyi_Instar_2,((Hesslandona_angustata_Instar_1,Klausmuelleria_salopensis)48,(Vargula_hilgendorfii_Instar_1,Darwinula_stevensoni_Instar_1)33)24)3)7,(Lepas_anatifera_Nauplius_1,Sacculina_carcini_Nauplius_1)45)17,(Rehbachiella_kinnekullensis_A_Instar_2_l2a,Derocheilocaris_remanei_Instar_1)46,(Rehbachiella_kinnekullensis_B_Instar_4_l4b,Hutchinsoniella_macracantha_Instar_1)9)6)13)86,(Nebalia_sp._Stage_g,Porcellio_scaber_Stage_14)75)100); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr67370] END; BEGIN TREES; TITLE Early_Semaphoronts; LINK TAXA = TaxaForAnalysisStep11979; TREE implied3_NT = [&R] (Glomeris_marginata_Adult,((Argulus_japonicus_Instar_1,((Labidocera_aestiva_Nauplius_1,Orchestia_cavimana_Stage_1,Pleomothra_apletocheles_Nauplius_1,(Bredocaris_admirabilis_Instar_1,Baccalaureus_falsiramus_Nauplius_1)16,((Yicaris_dianensis_Instar_1,(Manawa_staceyi_Instar_2,((Hesslandona_angustata_Instar_1,Klausmuelleria_salopensis)50,(Vargula_hilgendorfii_Instar_1,Darwinula_stevensoni_Instar_1)52)34)10)4,(Lepas_anatifera_Nauplius_1,Sacculina_carcini_Nauplius_1)36)23,(Rehbachiella_kinnekullensis_A_Instar_2_l2a,Derocheilocaris_remanei_Instar_1)25,(Rehbachiella_kinnekullensis_B_Instar_4_l4b,Hutchinsoniella_macracantha_Instar_1)10)7,(Eubranchipus_grubii_Stage_1,Triops_cancriformis_Stage_1)45)9)88,(Nebalia_sp._Stage_g,Porcellio_scaber_Stage_14)78)100); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr67372] END; BEGIN TREES; TITLE Early_Semaphoronts; LINK TAXA = TaxaForAnalysisStep11979; TREE implied3_traditional = [&R] (Glomeris_marginata_Adult,((Argulus_japonicus_Instar_1,((Labidocera_aestiva_Nauplius_1,Orchestia_cavimana_Stage_1,Pleomothra_apletocheles_Nauplius_1,(Bredocaris_admirabilis_Instar_1,Baccalaureus_falsiramus_Nauplius_1)16,((Yicaris_dianensis_Instar_1,(Manawa_staceyi_Instar_2,((Hesslandona_angustata_Instar_1,Klausmuelleria_salopensis)50,(Vargula_hilgendorfii_Instar_1,Darwinula_stevensoni_Instar_1)52)34)10)4,(Lepas_anatifera_Nauplius_1,Sacculina_carcini_Nauplius_1)36)23,(Rehbachiella_kinnekullensis_A_Instar_2_l2a,Derocheilocaris_remanei_Instar_1)25,(Rehbachiella_kinnekullensis_B_Instar_4_l4b,Hutchinsoniella_macracantha_Instar_1)10)7,(Eubranchipus_grubii_Stage_1,Triops_cancriformis_Stage_1)45)9)88,(Nebalia_sp._Stage_g,Porcellio_scaber_Stage_14)78)100); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr67371] END; BEGIN TREES; TITLE Early_Semaphoronts; LINK TAXA = TaxaForAnalysisStep11979; TREE implied100_NT = [&R] (Glomeris_marginata_Adult,((Argulus_japonicus_Instar_1,((Labidocera_aestiva_Nauplius_1,((Bredocaris_admirabilis_Instar_1,((Orchestia_cavimana_Stage_1,Manawa_staceyi_Instar_2,Pleomothra_apletocheles_Nauplius_1,Baccalaureus_falsiramus_Nauplius_1)26,(Lepas_anatifera_Nauplius_1,Sacculina_carcini_Nauplius_1)23)21)21,(Rehbachiella_kinnekullensis_A_Instar_2_l2a,(Rehbachiella_kinnekullensis_B_Instar_4_l4b,(Hutchinsoniella_macracantha_Instar_1,(Yicaris_dianensis_Instar_1,(Derocheilocaris_remanei_Instar_1,((Hesslandona_angustata_Instar_1,Klausmuelleria_salopensis)60,(Vargula_hilgendorfii_Instar_1,Darwinula_stevensoni_Instar_1)57)34)21)21)21)22)22)7)0,(Eubranchipus_grubii_Stage_1,Triops_cancriformis_Stage_1)71)26)81,(Nebalia_sp._Stage_g,Porcellio_scaber_Stage_14)70)100); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr67376] END;