#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 12, 2024; 4:23 GMT TreeBASE (cc) 1994-2008 Study reference: Kang J., Crous P.W., Old K., & Dudzinski M. 2001. Non-conspecificity of Cylindrocladium quinqueseptatum and Calonectria quinqueseptata based on ß-tubulin gene phylogeny and morphology. Canadian Journal of Botany, 79(10): 1241–1247. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S771] [ The following blocks are input data for analysis step 1218 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1218; DIMENSIONS NTAX=21; TAXLABELS Calonectria_multiseptata_1589 Calonectria_multiseptata_1602 Calonectria_quinqueseptata Calonectria_reteaudii_16550 Calonectria_reteaudii_3201 Calonectria_reteaudii_3205 Calonectria_reteaudii_3210 Calonectria_reteaudii_3213 Calonectria_reteaudii_3214 Calonectria_reteaudii_3216 Calonectria_reteaudii_3217 Calonectria_reteaudii_516 Calonectria_reteaudii_582.50 Calonectria_reteaudii_759 Calonectria_rumohrae_1603 Calonectria_rumohrae_215 Calonectria_rumohrae_218 Cylindrocladium_heptaseptatum_1002 Cylindrocladium_heptaseptatum_1003 Cylindrocladium_spathiphylli Fusarium_nygamai ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M812] TITLE 'b-tubulin'; LINK TAXA = TaxaForAnalysisStep1218; DIMENSIONS NCHAR=610; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Calonectria_multiseptata_1589 -----GAGT-GCCTTTG-TT-GCTTTCTGGCCCTGATTCTACCCCGCGGCCCCGGTTTCCACCGCTCCGACGA--AAACAAAGCC-G-CAACCTC-ACGAATGTGACGAGATATCAGAACAAGATT--GCTAACCTTGTGCTTCTTTCTCGATTATAGGTCCACCTCCAGACCGGCCAGTGCGTAAGTGCTCCTCTCGACTCCAACGATA-TTCTT-ATGACAAGATTCACTGACAGTTTTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTC{GT}ACAGCAATGGTGTCTACGCCGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGCGAAAAA--TCATGAG-TGCGC-TCGC-TTTGTGGAGAAA-CATA-GTCAAACTGACACACCATGTGTAGGCTTCCGGCAACAAGTTCGTTCCTCGCGCTG-CCTCGTTGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTTCGCCCCGACAACTT----------------------------------------------------- Calonectria_multiseptata_1602 ---GAGTGCCTTTGTTGCTT---T-GCTGCCCCTGATTCTACCCCGCGGCCCCGGTTTCCACCGCTCCGACGA--AAACAAAGCC-G-CAACCTC-ACGAATGTGACGAGATATCAGAACAAGATT--GCTAACCTTGTGCTTCTTTCTCGATTATAGGTCCACCTCCAGACCGGCCAGTGCGTAAGTGCTCCTCTCGACTCCAACGATA-TTCTT-ATGACAAGATTCACTGACAGTTTTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCCGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGCGAAAAA--TCATGAG-TGCGC-TCGC-TTTGTGGAGAAA-CATA-GTCAAACTGACACACCATGTGTAGGCTTCCGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTTGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGCCCCGACAACTT----------------------------------------------------- Calonectria_quinqueseptata TCTT-GAGACGCGTGCC-TTTGTT-GCTGCCCCTGATTCTACCCCGCCGTCCCGGTTTCCACCGCTTCGACGA--CAACAAAGCC-G-CACCCTTTTTGAACATGACGAGATATCAAAACAAGATT--GCTGACCATATGCTTCTTTCTCAATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCTTCTCAACTCCAACAAAAATTCTTCACGGCGAGATTCGCTGACAGTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCCGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGTGTCAATCATCAAGA--TGTGC-TCCC-TTGAGTGCAAGGT-GCAAGT-AAACT--CACACCATGT--AGGCTTCTGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTG Calonectria_reteaudii_16550 ----------GCGTGCC-TTGGTT-GCTGCCCCTGATTCTACCCCGCCGACCCGGTTTCCACCGCTTCGACGA--CAACAAAGCC-G-CAACCTCG-TGAACATGACGAGATATCGGAACAAGATT--GCTAACCATGTGCTTCTTTCTCGATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCCTCGC---TCCGAAAATG-TTCT-CATGACAACGTTCACTGACAGTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACGCTGGTACTTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTAT-C-AAAAAAC--ATGCG-TGCGC-TCAC-TTTGACGAGAAAT-ACAGG-CAAACTGACACACCATGTGTAGGCTTCCGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGCCCCGACAACTT----------------------------------------------------- Calonectria_reteaudii_3201 TCTGAGAGACGCGTGCC-TTTGTT-GCTGCCCCTGATTCTACCCCGCCGACCCGGTTTCCACCGCTTCGACGA--CAACAAAGCC-G-CAACATC-ATGAACAAGACGAGATATCCGAACAAGATT--GCTAACCATGTGCTTCTTTCTGGATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCCTCTTGATTGCAAATATG-TTCT-CATGACAAGATTCACTGACAGTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGCGAAAAACC--ATG-CCTGCGC-TCGC-TTTGTCGAAAAAGCACAAG-CAAACTGACACACCATGT--AGGCTTCCGGCAACAAGTTCGTTCCTGGCGCTGTCCTCGTCGATCTTGAGCCCCGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTG Calonectria_reteaudii_3205 TCT--GAGACGCGTGCC-TTTGTT-GCTGCCCCTGATTCTACCCCGCCGACCCGGTTTCCACCGCTTCGACGA--CAACAAAGCC-G-CAACATC-ATGAACAAGACGAGATATCGGAACAAGATT--GCTAACCATGTGCTTCTTTCTCGATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCCTCTCGATTCCAAATATG-TTCT-CATGACAAGATTCACTGACAGTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGCGAAAAACC--ATG-CCTGCGC-TCGC-TTTGTCGAAAAAGCACAAG-CAAACTGACACACCATGT--AGGCTTCCGGCAACAAGTTCGTTCCTGGCGCTGTCCTCGTCGATCTTGAGCCCCGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTG Calonectria_reteaudii_3210 TCTCAGAGACGCGTGCC-TTTGTT-GCTGCCCCTGATTCTACCCCGCCGACCCGGTTTCCACCGCTTCGACGA--CAACAAAGCC-G-CAACATC-ATGAACAAGACGAGATATCGGAACACGATT--GCTAACCATGTGCTTCTTTCTCGATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCCTCTTGACTCCGAATATG-TTCT-CATGACAGGATTCACTGACAGTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGCGAAAAACC--ATG-CCTGCGC-TCGC-TTTGTCGAAAAAGCACAAG-CAAACTGACACACCATGT--AGGCTTCCGGCAACAAGTTCGTTGCTCGCGCTGTCCTCGGCTATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTG Calonectria_reteaudii_3213 TCTGAGAGACGCGTGCC-TTTGTT-GCTGCCCCTGATTCTACCCCGCCGACCCGGTTTCCACCGCTTCGACGA--CAACAAAGCC-G-CAACATC-ATGAACAAGACGAGATATCGGAACACGATT--GCTAACCATGTGCTTCTTTCTCGATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCCTCTTGACTCCGAATATG-TTCT-CATGACAAGATTCACTGACAGTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGCGAAAAACC--ATG-CCTGCGC-TCGC-TTTGTCGAAAAAGCACAAG-CAAACTGACACACCATGT--AGGCTTCCGGCAACAAGTTCGTTGCTCGCGCTGTCCTCGGCTATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTG Calonectria_reteaudii_3214 TCT--GAGACGCGTGCC-TTTGTT-GCTGCCCCTGATTCTACCCCGCCGACCCGGTTTCCACCGCTTCGACGA--CAACAAAGCC-G-CAACATC-ATGAACAAGACGAGATATCGGAACAAGATT--GCTAACCATGTGCTTCTTTCTCGATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCCTCTCGATTCCAAATATG-TTCT-CATGATAAGATTCACTGACAGTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGCGAAAAACC--ATG-CCTGCGC-TCGC-TTTGTCGAAAAAGCACAAG-CAAACTGACACACCATGT--AGGCTTCCGGCAACAAGTTCGTTCCTGGCGCTGTCCTCGTCGATCTTGAGCCCCGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTG Calonectria_reteaudii_3216 TCTGAGAGACGCGTGCC-TTTGTT-GCTGCCCCTGATTCTACCCCGCCGACCCGGTTTCCACCGCTTCGACGA--CAACAAAGCC-G-CAACATC-ATGAACAAGACGAGATATCGGAACACGATT--GCTAACCATGTGCTTCTTTCTCGATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCCTCTTGACTCCGAATATG-TTCT-CATGACAAGATTCACTGACAGTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGCGAAAAACC--ATG-CCTGCGC-TCGC-TTTGTCGAAAAAGCACAAG-CAAACTGACACACCATGT--AGGCTTCCGGCAACAAGTTCGTTGCTCGCGCTGTCCTCGGCTATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTG Calonectria_reteaudii_3217 TCT--GAGACGCGTGCC-TTTGTT-GCTGCCCCTGATTCTACCCCGCCGACCCGGTTTCCACCGCTTCGACGA--CAACAAAGCC-G-CAACATC-ATGAACAAGACGAGATATCGGAACAAGATT--GCTAACCATGTGCTTCTTTCTCGATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCCTCTCGATTCCAAATATG-TTCT-CATGACAAGATTCACTGACAGTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGCGAAAAACC--ATG-CCTGCGC-TCGC-TTTGTCGAAAAAGCACAAG-CAAACTGACACACCATGT--AGGCTTCCGGCAACAAGTTCGTTCCTCGCGCTGTCCTAGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTG Calonectria_reteaudii_516 ----------GCGTGCC-TTTGTT-GCTGCCCCTGATTCTACCCCGCCGACCCGGTTTCCACCGCTTCGACGA--CAACAAAGCC-G-CAACATC-ATGAACAAGACGAGATATCGGAACAAGATT--GCTAACCATGTGCTTCTTTCTCGATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCCTCTCGATTCCAAATATG-TTCT-CATGACAAGATTCACTGACAGTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTTTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGCGAAAAAC--CATG-CCTGCGC-TCGC-TTTGTCGAAAAAGCACAAG-CAAACTGACACACCATGT--AGGCTTCCGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGCCCCGACAACTT----------------------------------------------------- Calonectria_reteaudii_582.50 TCT--GAGACGCGTGCC-TTTGTT-GCTGCCCCTGATTCTACCCCGCCGACCCGGTTTCCACCGCTTCGACGA--CAACAAAGCC-G-CAACATC-ATGAACAAGACGAGATATCGGAACAAGATT--GCTAACCATGTGCTTCTTTTTCGATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCCTCTCGATTCCAAATATG-TTCT-CATGACAAGATTCACTGACAGTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGCGAAAAACC--ATG-CCTGCGC-TCGC-TTTGTCGAAAAAGCACAAG-CAAACTGACACACCATGT--AGGCTTCCGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTG Calonectria_reteaudii_759 ----------GCGTGCC-TTTGTT-GCTGCCCCTGATTCTACCCCGCCGACCCGGTTTCCACCGCTTCGACGA--CAACAAAGCC-G-CAACATC-ATGAACAAGACGAGATATCGGAACAAGATT--GCTAACCATGTGCTTCTTTCTCGATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCCTCTCGATTCCAAATATG-TTCT-CATGACAAGATTCACTGACAGTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGCGAAAAAC--CATG-CCTGCGC-TCGC-TTTGTCGAAAAAGCACAAG-CAAACTGACACACCATGT--AGGCTTCCGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTTCGTGCCGGTCCTTTCTGGT-AGCTCTTTCGC---------------------------------------------------------------- Calonectria_rumohrae_1603 ---------------CC-TTTGTT-GCTTGCCCTAATTCAACCCCGCCGCCCCGGTTTCCACCGCTTCGACAA--CAGCAAAGTC-G-CACCCTC-TTGAACATGATGATATATTGGAATCAGATT--GCTGACCGTGTGCTTCTTTCTCAATAATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTACTTTTCTCAACTCCAGCAAAA-TTCT-CGCAGCGAGATGAACTGACATTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCCGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGTTACAA-CC----GCGCGGCGTATCGCCTTTAACCAGCAGT-GCAAG-AAAACT--CACATCATGT--AGGCCTCTGGCAACAAGTTCGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGCCCCGACAACTT----------------------------------------------------- Calonectria_rumohrae_215 ----------GCGTGCCCTTTGTT-GCTGCCCCTGATTCTACCCCGCCGCCCCGGTTTCCACCGCTTCGACAA--CAGCAAAGCC-G-CACCCTC-TTGAACATGACGATATATTGGAATCAAATT--GCTGACCATGTGCTTCTTTCTCAATTATAGGTCTACCTCCAGACCGGTCAGTGCGTAAGTACATTTCTCAACTCCAACAAAA-TTCT-CGCAGCGAGATAAACTGACATTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTGTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCCGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGTTGCAA-CC----GCGCGGCGTATCGCCTTTAACCGGCAGT-GCAAG-AAAACT--CACATCATGT--AGGCCTCTGGCAACAAGTTCGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGCCCCGACAACTT----------------------------------------------------- Calonectria_rumohrae_218 ----------GCGTGCCCTTTGTT-GCTGCCCCTGATTCTACCCCGCCGCCCCGGTTTCCACCGCTTCGACAA--CAGCAAAGCC-G-CACCCTC-TTGAACATGACGATATATTGGAATCAAATT--GCTGACCATGTGCTTCTTTCTCAATTATAGGTCTACCTCCAGACCGGTCAGTGCGTAAGTACATTTCTCAACTCCAACAAAA-TTCT-CGCAGCGAGATAAACTGACATTTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTT{CG}TGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCCGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGTTGCAA-CC----GCGCGGCGTATCGCCTTTAACCGGCAGT-GCAAG-AAAACT--CACATCATGT--AGGCCTCTGGCAACAAGTTCGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGG-CAGCTCTTCCGCCCCGACAACTT----------------------------------------------------- Cylindrocladium_heptaseptatum_1002 ----------GCGGGCC-TTTGTT-GTTGCCCCTGATTCTACCCCGCCGCCCCGGTTTCCACCGCTTCGACGA--CAGCAAAGCC-G-CGTCCTC-ATGAACATGGCGAGATATCAGAACAAGATT--GCTGACTATGTGCTTCTTTCTCAATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCTTCTCAACTCCAACAAAA-TTCT-CCCGGCGAGATTTACTGACATGTTTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGT?TACGCCGGTACCTCCGAGCTTCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGT-TCAAACCACACGACCTAC---TCCC-TCATACCAGCAGTATGA-G-AAAACT--CACATCATGT--AGGCCTCTGGCAACAAGTTCGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATG{AG}ATGCCGTCCGTGCCGGTCCTTTCGG-TCAGCTCTTCCGCCCCGACAACTT----------------------------------------------------- Cylindrocladium_heptaseptatum_1003 ----------GCGTGCC-TTTGCT-GCTGCCCCTGATACTACCCCGCCGCCCCGGTTTCCACCGCTTCGACGA--CAGCAAAGCC-G-CGTCCTC-ATGAACGTGGCGAGATATCACAACAAGATT--GCTGACTATGTGCTTCTTTCTCAATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCTTCTCAACTACAACAAAA-TTCT-CGCGGCAAGATTTACTGACATGTGTCGAT-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTGTGGCGAGCACGGTCTCAACAGCAATGGTGTCTACGCCGGTACCTCCGAGCTTCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTTTGT-AAAAACCACACGAACTAC-T-TCC--TTATACCAGCAGTATG--G-AAAACT--CACATC-TGTG--GGCCTCTGGCAACAAGTTCGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTT-GG-TCAGCTCTTCCGCCCCGACAACTT----------------------------------------------------- Cylindrocladium_spathiphylli ----------GCGTGCC-TTTGTT-GCTGCCCCTGATTCTACCCCGCCGCCCCGGTTTCCACCGCTTCGACGA--CAACAAAGCC-G-CAGCCTC-ACGAGCATCATGAGATATCGGAACAAGATT--GCTAACCGTGTGCTTCTTTCTCCATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTCCTCA--ACTCCAACAAAA-TTCT-CACGACCGGATTCACTGACAGTTATCGAC-AGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGTGAAAA-CC--ACGCGGTGTTC-TCGC-T----CGAGAG-GCACAAG-CAAACTGACAC--CATGT--AGGCTTCTGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGC-CAGCTCTTTCGACCCGACAACTT----------------------------------------------------- Fusarium_nygamai TGTT-G-CACGCGT----TGTGTTTCGTGCCCCTGATTCTACCCCGC--TGGGCGGTGGCAGCTCAGCGACAATGCATGATAGATAGCCAGCAGCTTTCA-CAT-ACCTTCTGTC--AAGACGAAGAAGCTAATCAGAT-CTT--TTCTCTACGATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGCTCATCGC--TTCCTCAACG--T-CG-CATGCGGGGGAT-ACTTACAGT-GTTGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGAGCTTCAGCTCGAGCGCATGAGTGTTTACTTCAACGAGGTATGC-ATTA------GCAG-TCAA--T-G--TC-AAG----AGT-TC--C-CAAGCTTACACA---TCT--AGGCCTCTGGCAACAAGTATGTTCCCCGAGCCGTCCTCGTCGATCTCGAGCCTGGTACCATGGACGCCGTCCGTGCTGGTCCCTTCGG-TCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGTCAGTCCGGTGC-------------------------------- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'b-tubulin') = N: 1-610; CODONPOSSET CodonPositions (CHARACTERS = 'b-tubulin') = N: 1-610; END; [ The following blocks are output data for analysis step 1218 ] BEGIN TREES; TITLE Tb5994; LINK TAXA = TaxaForAnalysisStep1218; TREE Fig._1 = [&R] ((((Cylindrocladium_spathiphylli,((Cylindrocladium_heptaseptatum_1002,Cylindrocladium_heptaseptatum_1003)Cylindrocladium_heptaseptatum,(Calonectria_rumohrae_1603,(Calonectria_rumohrae_215,Calonectria_rumohrae_218))Calonectria_rumohrae)),(((Calonectria_multiseptata_1589,Calonectria_multiseptata_1602)Calonectria_multiseptata,(Calonectria_reteaudii_516,Calonectria_reteaudii_759)),Calonectria_reteaudii_16550)),(((Calonectria_reteaudii_3217,(Calonectria_reteaudii_3214,Calonectria_reteaudii_3205,Calonectria_reteaudii_3201),Calonectria_reteaudii_582.50),((Calonectria_reteaudii_3216,Calonectria_reteaudii_3213),Calonectria_reteaudii_3210)),Calonectria_quinqueseptata))Calonectria,Fusarium_nygamai); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3850] END;