#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 18, 2025; 7:34 GMT TreeBASE (cc) 1994-2008 Study reference: Harder C.B., & Frøslev T.G. 2013. A three-gene phylogeny of the Mycena pura complex reveals 11 phylogenetic species and shows ITS to be unreliable for species identification. Fungal Biology, 117(11-12): 764-775. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S14759] [ The following blocks are input data for analysis step 12208 ] BEGIN TAXA; TITLE TaxaForAnalysisStep12208; DIMENSIONS NTAX=46; TAXLABELS Mycena_cf._pura_I_CBH039 Mycena_cf._pura_II_CBH105 Mycena_cf._pura_II_CBH169 Mycena_cf._pura_II_CBH366 Mycena_cf._pura_II_CBH404 Mycena_cf._pura_III_CBH019 Mycena_cf._pura_III_CBH022 Mycena_cf._pura_III_KK Mycena_cf._pura_IV_CBH410 Mycena_cf._pura_IV_JV06979 Mycena_cf._pura_IV_TL12786 Mycena_cf._pura_IV_TL4571 Mycena_cf._pura_IX_CBH166 Mycena_cf._pura_IX_CBH358 Mycena_cf._pura_IX_CBH367 Mycena_cf._pura_IX_CBH371 Mycena_cf._pura_VI_BAP132 Mycena_cf._pura_VII_IS10_11_20 Mycena_cf._pura_VIII_CBH216 Mycena_cf._pura_VIII_CBH402 Mycena_cf._pura_X_BAP165A Mycena_cf._pura_XI_CBH187 Mycena_cf._pura_XI_CBH386 Mycena_diosma_CBH400 Mycena_diosma_LK1191_200 Mycena_dura_Holotypus Mycena_lammiensis_TUR165927 Mycena_luteovariegata_CBH226 Mycena_luteovariegata_DB2005_152 Mycena_luteovariegata_TL5614 Mycena_pearsoniana_CBH068 Mycena_pearsoniana_JV06890 Mycena_pearsoniana_LK880_2002 Mycena_pelianthina_CBH015 Mycena_pelianthina_CBH016 Mycena_rosea_CBH097 Mycena_rosea_CBH383 Mycena_rosea_CBH409 Mycena_rosea_TL12393 Mycena_rosea_TL12409 Mycena_rosea_UP2 Mycena_rubromarginata_MrubJV362 Mycena_spp._Ecuador_TL8052 Mycena_spp._Ecuador_TL9433 Mycena_spp._Ecuador_TL9450 Mycena_spp._Ecuador_TL9678 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19758] TITLE Mycena_tEF_alignment; LINK TAXA = TaxaForAnalysisStep12208; DIMENSIONS NCHAR=343; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Mycena_cf._pura_I_CBH039 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATCAC--CCCTAACGAATAATTTCGATTCGATTCACAGTGGAGCGAGGACCGTTTCAACGAAATCGTTCCACTTTCATTAAGAAGGTCGGCTACAACCCCAAAAATACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGA-TTGTATT--TCTACCGAACCTAACTTG-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGACGGCCTATGGAC Mycena_cf._pura_II_CBH105 TGCCTTCACTCTCGGTGTGCGCCAGCT{CT}ATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTGTCAG--CC{CG}TAACGAATAATTTTGATCCGATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCACCTT{CT}ATTAAGAAGGTCGGCTACAACCCCAAAACTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAAATTTGTATT--TCTACCGAACCTAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTAGCGAC Mycena_cf._pura_II_CBH169 TGCCTTCACTCTCGGTGTGCGCCAGCTCATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTGTCAG--CCGTAACGAATAATTTTGATCCGATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCACCTTCATTAAGAAGGTCGGCTACAACCCCAAAACTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAAATTTGTATT--TCTACCGAACCTAACCTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTAGCGAC Mycena_cf._pura_II_CBH366 TGCCTTCACTCTCGGTGTGCGCCAGCTCATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTGTCAG--CCGTAACGAATAATTTTGATCCGATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCACCTTCATTAAGAAGGTCGGCTACAACCCCAAAACTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAAATTTGTATT--TCTACCGAACCTAACCTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTAGCGAC Mycena_cf._pura_II_CBH404 TGCCTTCACTCTCGGTGTGCGCCAGCTCATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTGTCAG--CCGTAACGAATAATTTTGATCCGATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCACCTTCATTAAGAAGGTCGGCTACAACCCCAAAACTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAAATTTGTATT--TCTACCGAACCTAACCTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTAGCGAC Mycena_cf._pura_III_CBH019 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTACATTATCAG--CTCCAACGAACAATTTTGATCCTATTCACAGTGGAGCGAGGACCGTTTCAACGAAATCGTTCGACTTTTATTAAGAAGGTCGGCTACAACCCCAAATGTACCCTATCTCTGGCTGGCACGGTGACAACATGCTCGAGGAGATGAAGTCCATATTTGTATT--T{CT}T-CCGAACCTAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTATGGAC Mycena_cf._pura_III_CBH022 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTACATTATCAG--CTCCAACGAACAATTTTGATCCTATTCACAGTGGAGCGAGGACCGTTTCAACGAAATCGTTCGACTTTTATTAAGAAGGTCGGCTACAACCCCAAATGTACCCTATCTCTGGCTGGCACGGTGACAACATGCTCGAGGAGATGAAGTCCATATTTGTATT--T{CT}T-CCGAACCTAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTATGGAC Mycena_cf._pura_III_KK TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTACATTATCAG--CCCCAACGAACAATTTTGATCCTATTCACAGTGGAGCGAGGACCGTTTCAACGAAATCGTTCGACTTTTATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATCTCTGGCTGGCACGGTGACAACATGCTCGAGGAGATGAAGTTCATATTTGTATT--TCT-CCGAAC{CT}TAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTATGGAC Mycena_cf._pura_IV_CBH410 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATCAG--CCCTAACGAATAATTTTGATCCGATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCACTTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT--TCTACCGAATCTAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCCATCGCCGGCCTGTGGAC Mycena_cf._pura_IV_JV06979 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATCAG--CCCTAACGAATAATTTTGATCCGATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCACTTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT--TCTACCGAATCTAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCCATCGCCGGCCTGTGGAC Mycena_cf._pura_IV_TL12786 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATCAG--CCCTAACGAATAATTTTGATCCGATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCACTTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT--TCTACCGAATCTAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCCATCGCCGGCCTGTGGAC Mycena_cf._pura_IV_TL4571 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATCAG--CCCTAACGAATAATTTTGATCCGATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCACTTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT--TCTACCGAATCTAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCCATCGCCGGCCTGTGGAC Mycena_cf._pura_IX_CBH166 CGCGTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATAAG----CCAACGAATGATTTTGATCCTAT--ACAGTGGAGCGAGGACCGTTACAACGAAATCGTTCCACTTTCATTAAGAAGGTCGGCTACAACCCCAAAGCGACCCTATTTCTGGCTGGCACGGCGACAACATGCTTGAGGAGATGAAAGTTCAGATTGTGTT--TCTGTCGAAGCCAACTCA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAATCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGTCGGCCTGTGGAC Mycena_cf._pura_IX_CBH358 CGCGTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATAAG----CCAACGAATGATTTTGATCCTAT--ACAGTGGAGCGAGGACCGTTACAACGAAATCGTTCCACTTTCATTAAGAAGGTCGGCTACAACCCCAAAGCGACCCTATTTCTGGCTGGCACGGCGACAACATGCTTGAGGAGATGAAAGTTCAGATTGTGTT--TCTGTCGAAGCCAACTCA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAATCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGTCGGCCTGTGGAC Mycena_cf._pura_IX_CBH367 CGCGTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATAAG----CCAACGAATGATTTTGATCCTAT--ACAGTGGAGCGAGGACCGTTACAACGAAATCGTTCCACTTTCATTAAGAAGGTCGGCTACAACCCCAAAGCGACCCTATTTCTGGCTGGCACGGCGACAACATGCTTGAGGAGATGAAAGTTCAGATTGTGTT--TCTGTCGAAGCCAACTCA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAATCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGTCGGCCTGTGGAC Mycena_cf._pura_IX_CBH371 CGCGTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATAAG----CCAACGAATGATTTTGATCCTAT--ACAGTGGAGCGAGGACCGTTACAACGAAATCGTTCCACTTTCATTAAGAAGGTCGGCTACAACCCCAAAGCGACCCTATTTCTGGCTGGCACGGCGACAACATGCTTGAGGAGATGAAAGTTCAGATTGTGTT--TCTGTCGAAGCCAACTCA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAATCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGTCGGCCTGTGGAC Mycena_cf._pura_VI_BAP132 ---------------TGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATAAG--CCCCAACGAATAATTTTGATCCTATTCACAGTGGAGCGAAGACCGTTTCAACGAAATCGTTCCACTTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT--TCTGCCGAACCTAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTGTGGAC Mycena_cf._pura_VII_IS10_11_20 ---------------TGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATAAG--CCCTAATGAATAATTTTGATCCTATTCACAGTGGAGCGAGGACCGTTTCAACGAAATCGTTCCACTTTCATTAAGAAGGTCGGGTACAACCCCAAAAGTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT--TCTGCCGAACCTAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAGGCTATCGATGCTATCGCCGGCCTGTGGAC Mycena_cf._pura_VIII_CBH216 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCCGTCAACAAGATGGGGTTCGGTGCATTATAAG--CCCTAATGAATAATTTTGATCCTATTCACAGTGGAGCGAGGACCGTTTCAACGAAATCGTTCCACTTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATCTCTG{AG}CTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT--TCTGCCGAACCTAACTTAACAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTGTGGAC Mycena_cf._pura_VIII_CBH402 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCCGTCAACAAGATGGGGTTCGGTGCATTATAAG--CCCTAATGAATAATTTTGATCCTATTCACAGTGGAGCGAGGACCGTTTCAACGAAATCGTTCCACTTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT--TCTGCCGAACCTAACTTAACAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTGTGGAC Mycena_cf._pura_X_BAP165A --------------------------------------------------GGTTCGGTGCATTAAAAG--CCATAACGAATAA{AG}TTTGATCCTATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCGACTTTCATTAGGAAGGTCGGCTACAACCCCAAATGCACCCTATTTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGCATT--TCTACCGAACCCAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATTGCCGGCCTAGTGAC Mycena_cf._pura_XI_CBH187 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATCAG--CCCTGACGAATAATGTTGATTCTATTCGCAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCACCTTCATTAAGAAGGTCGGCTACAACCCCAAAACTACCCTATCTCTGGCTGGCACGGTGACAATATGCTTGAGGAGATGTAGTTCAGATTTGTATT--TCTACCGACCCTAACTTG-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTACGGAC Mycena_cf._pura_XI_CBH386 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATCAG--CCCTGACGAATAATGTTGATTCTATTCGCAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCACCTTCATTAAGAAGGTCGGCTACAACCCCAAAACTACCCTATCTCTGGCTGGCACGGTGACAATATGCTTGAGGAGATGTAGTTCAGATTTGTATT--TCTACCGACCCTAACTTG-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTACGGAC Mycena_diosma_CBH400 TGCCTTCACTCTCGGTGTGCGCCAGCTCATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTACATG--GCCTGACGAACCATTTTGACCCTGTTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCGGCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTACCCTATTTCTGGTTGGCACGGTGACAACATGTTGGAGGAGATGAAGTTCAGATTTGTATT--TCTATCGAACCCAACTTA-CAGCATGCCGTGGTTCAAGGGCTGGGTCAAAGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATTGCCGGCCTACCGAC Mycena_diosma_LK1191_200 TGCCTTCACTCTCGGTGTGCGCCAGCTCATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTACATG--GCCTGACGAACCATTTTGACCCTGTTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCGGCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTACCCTATTTCTGGTTGGCACGGTGACAACATGTTGGAGGAGATGAAGTTCAGATTTGTATT--TCTATCGAACCCAACTTA-CAGCATGCCGTGGTTCAAGGGCTGGGTCAAAGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATTGCCGGCCTACCGAC Mycena_dura_Holotypus TGCCTTCACTCTTGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATAAG--CCCCAACGAATAA-TCTGATCCTGTTCACAGTGGAGTGAGGACCGTTTCAACGAAATCATTCCACTTTCATTAAGAAGGTCGGCTACAACCCCAAAGCTACCCTATTTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT--TTTACCG-ACCCAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCCATCGATGCTATTGTCGGCCTGTGGAC Mycena_lammiensis_TUR165927 TGCCTTCACCCTCGGTGTACGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATAAGCCCCCTATCGAATAATTTTGAT-CTATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCATTCCACTTTCATTAAGAAGGTCGGCTTCAACCCCAAAAGTACCCTATTTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT--TCT------CCCAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAATCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATTGCCGGCCTCTGGAC Mycena_luteovariegata_CBH226 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATAAG--CCCTAACGAATGATTTTGATCCTATTCACAGTGGAGCGAGGACCGTTTCAACGAAATCGTTCCACCTTCATTAAGAAGGTCGGGTACAACCCCAAATCTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATA--TCTACCGAACCTAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAAACCAAGTCAAGGCCAAAGAGCTTCTTGAAGCTATCGATGCTATCGCCGGCCTGTGGAC Mycena_luteovariegata_DB2005_152 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATAAG--CCCTAACGAATGATTTTGATCCTATTCACAGTGGAGCGAGGACCGTTTCAACGAAATCGTTCCACCTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATA--TCTACCGAACCTAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTGTGGAC Mycena_luteovariegata_TL5614 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATAAG--CCCTAACGAATGATTTTGATCCTATTCACAGTGGAGCGAGGACCGTTTCAACGAAATCGTTCCACCTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATA--TCTACCGAACCTAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAAACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTGTGGAC Mycena_pearsoniana_CBH068 TGCTTTCACTCTCGGTGTCCGCCAGCTCATCGTCGCGGTCAACAAGATGGGGTTTGGTGCACTATAAG--CGCTAACGAATAATTTCGATCCTATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCACCTTCATTAAGAAGGTCGGCTACAACCCCAAAAATACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGGAG-----ATTTGTGTT--TCTGCCGAATCCGACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATTGCCGGCCTGTGGAC Mycena_pearsoniana_JV06890 TGCTTTCACTCTCGGTGTCCGCCAGCTCATCGTCGCGGTCAACAAGATGGGGTTTGGTGCACTATAAG--CGCTAACGAATAATTTCGATCCTATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCACCTTCATTAAGAAGGTCGGCTACAACCCCAAAAATACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGGAG-----ATTTGTGTT--TCTGCCGAATCCGACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATTGCCGGCCTGTGGAC Mycena_pearsoniana_LK880_2002 -----------TCGGTGTCCGCCAGCTCATCGTCGCGGTCAACAAGATGGGGTTTGGTGCACTATAAG--CGCTAACGAATAATTTCGATCCTATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCACCTTCATTAAGAAGGTCGGCTACAACCCCAAAAATACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGGAG-----ATTTGTGTT--TCTGCCGAATCCGACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATTGCCGGCCTGTGGAC Mycena_pelianthina_CBH015 TGCCTTCACCCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATAAGGCCCCTATCGAATAATTTTGGTCCTATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCATTCCACTTTCATTAAGAAGGTCGGCTACAACCCTAAATCTACCCTATTTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT--TCT------CACAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTTAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTAAGGAC Mycena_pelianthina_CBH016 TGCCTTCACCCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTGCATTATAAGCCCCCTATCGAATAATTTTGGTCCTATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCATTCCACTTTCATTAAGAAGGTCGGCTACAACCCTAAATCTACCCTATTTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT--TCT------CACAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTTAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATCGCCGGCCTAAGGAC Mycena_rosea_CBH097 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTACATTATAAA--CCCTAACGAATAATTTTGATCCTGTTTACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCGACTTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATTTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGA-TTGTATT--TCTACCGAACCCAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTGCTTGAAGCTATCGATGCTATTGCCGGCCTACGGAC Mycena_rosea_CBH383 TGCCTTCACTCTCGGTGTGCGCCA{AG}CTTATCGTTGCGGTCAACAAGATGGGGTTCGGTACATTATAAA--CCCTAACGAATAATTTTGATCCTGTTTACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCGACTTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATTTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGA-TTGTATT--TCTACCGAACCCAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTGCTTGAAGCTATCGATGCTATTGCCGGCCTACGGAC Mycena_rosea_CBH409 TGCCTTCACTCTCGGTGTGCGCC{AT}{AG}CTTATCGTTGCGGTCAACAAGATGGGGTTCGGTACATTATAAA--CCCTAACGAATAATTTTGATCCTGTTTACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCGACTTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATTTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGA-TTGTATT--TCTACCGAACCCAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTGCTTGAAGCTATCGATGCTATTGCCGGCCTACGGAC Mycena_rosea_TL12393 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTACATTATAAA--CCCTAACGAATAATTTTGATCCTGTTTACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCGACTTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATTTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGA-TTGTATT--TCTACCGAACCCAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTGCTTGAAGCTATCGATGCTATTGCCGGCCTACGGAC Mycena_rosea_TL12409 TGCCTTCACTCTCGGTGTGCGCC{AT}{AG}CTTATCGTTGCGGTCAACAAGATGGGGTTCGGTACATTATAAA--CCCTAACGAATAATTTTGATCCTGTTTACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCGACTTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATTTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGA-TTGTATT--TCTACCGAACCCAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTGCTTGAAGCTATCGATGCTATTGCCGGCCTACGGAC Mycena_rosea_UP2 TGCCTTCACTCTCGGTGTGCGCCAGCTTATCGTTGCGGTCAACAAGATGGGGTTCGGTACATTATAAA--CCCTAACGAATAATTTTGATCCTGTTTACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCGACTTTCATTAAGAAGGTCGGCTACAACCCCAAATCTACCCTATTTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGA-TTGTATT--TCTACCGAACCCAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAGACTCTGCTTGAAGCTATCGATGCTATTGCCGGCCTACGGAC Mycena_rubromarginata_MrubJV362 TGCCTTCACCCTCGGTGTGCGTCAGCTCATCGTCGCCGTCAACAAGATGGGGTTTG----TCTTTTAG---CTTGGATAATTATCTTAGTAACTTTTACAGTGGAGCGAGGACCGTTTCAACGAAATTATTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAAAGCAGCCCATCTCGGGCTGGCACGGTGACAACATGTTGGAGGAGATGATTCTTATTTTTGCTTCAATATTTTGTTTTTTGCTCA-CAGCATGCCGTGGTTCAAGGGCTGGACCAAGGAGACCAAGTCAAGGGCAAAACCCTCCTCGAGGCTATCGACGCCATCGCCGGCCTTCCGAC Mycena_spp._Ecuador_TL8052 TGCCTTCACTCTCGGTGTGCGCCAGCTTATTGTTGCGGTCAACAAGATGGGGTTCGGTGTGCTTGAAG--TCCTAACGAATAATGTTGATCCTATTCACAGTGGAGTGAGGACCGTTTCAACGAAATCGTTCCACTTTCATAAAGAAGGTCGGCTACAACCCCAAAACTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAATTCAGACTTGTATT--TCTACCGAATCCAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACGAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATTGCCGGCCTGTGGAC Mycena_spp._Ecuador_TL9433 TGCCTTCACTCTCGGTGTGCGCCAGCTTATTGTTGCGGTCAACAAGATGGGGTTCGGTGTACTTGAAG--TCCTAACGAATAATTTTCATCCTATTCACAGTGGAGTGAGGATCGTTTCAACGAAATCGTTCCACTTTCATAAAGAAGGTCGGCTACAACCCCAAAGCTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT--TCTACCGAATCCAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACGAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATTGCCGGCCTACGGAC Mycena_spp._Ecuador_TL9450 TGCCTTCACTCTCGGTGTGCGCCAGCTTATTGTTGCGGTCAACAAGATGGGGTTCGGTGTACTTGAAG--TCCTAACGAATAATTTTCATCCTATTCACAGTGGAGTGAGGATCGTTTCAACGAAATCGTTCCACTTTCATAAAGAAGGTCGGCTACAACCCCAAAGCTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT--TCTACCGAATCCAACTTA-CAGCATGCCCTGGTTCAAGGGCTGGACCAAGGAGACGAAGTCAAGGGCAAGACTCTTCTTGAAGCTATCGATGCTATTGCCGGCCTACGGAC Mycena_spp._Ecuador_TL9678 --------------GTGTGCGCCAGCTTATTGTTGCGGTCAATAAGATGGGGTTCGGTGTACTTGAAG--TCCTAACGAATAATTTCGATCCTATTCACAGTGGAGCGAGGACCGTTTCAACGAAATCGTTCCACTTTCATAAAGAAGGTTGGCTACAACCCCAAAACTACCCTATCTCTGGCTGGCACGGTGACAACATGCTTGAGGAGATGAAGTTCAGATTTGTATT-------CGAATCCAGCTTA-CAGCATGCCTTGGTTCAAGGGCTGGACCAAGGAGACGAAGT{CT}AAGGGCAAGACTCTTCTTGAAGCTAT{CT}GATGCCATTGCCGGCCTGTGGAC ; END; [ The following blocks are output data for analysis step 12208 ] BEGIN TREES; TITLE RAxML_bipartitionsBranchLabels_tEF; LINK TAXA = TaxaForAnalysisStep12208; TREE tree_1 = [&R] (Mycena_rubromarginata_MrubJV362:0.3442213007254913,((Mycena_cf._pura_XI_CBH187:1.57138158037176E-6,Mycena_cf._pura_XI_CBH386:1.57138158037176E-6):0.03662934758140254,((Mycena_cf._pura_I_CBH039:0.023430422598709165,(Mycena_cf._pura_II_CBH105:1.57138158037176E-6,(Mycena_cf._pura_II_CBH366:1.57138158037176E-6,(Mycena_cf._pura_II_CBH169:1.57138158037176E-6,Mycena_cf._pura_II_CBH404:1.57138158037176E-6):1.57138158037176E-6):0.0031418502608567384):0.028888565220285226):0.004725014380367653,((Mycena_cf._pura_III_KK:1.57138158037176E-6,(Mycena_cf._pura_III_CBH019:1.57138158037176E-6,Mycena_cf._pura_III_CBH022:1.57138158037176E-6):0.007437902674626077):0.019780069123906598,((Mycena_cf._pura_IV_TL4571:1.57138158037176E-6,(Mycena_cf._pura_IV_CBH410:1.57138158037176E-6,(Mycena_cf._pura_IV_JV06979:1.57138158037176E-6,Mycena_cf._pura_IV_TL12786:1.57138158037176E-6):1.57138158037176E-6):1.57138158037176E-6):0.013163580603352886,(((Mycena_luteovariegata_DB2005_152:1.57138158037176E-6,(Mycena_luteovariegata_CBH226:0.01508391906184005,Mycena_luteovariegata_TL5614:1.57138158037176E-6):0.0024307553643516657):0.009995196550278232,(Mycena_cf._pura_VI_BAP132:0.007633276414815587,(Mycena_cf._pura_VII_IS10_11_20:0.015517347621548525,(Mycena_cf._pura_VIII_CBH216:1.57138158037176E-6,Mycena_cf._pura_VIII_CBH402:1.57138158037176E-6):0.002483072564245543):0.002359314638030714):0.005051059440587167):0.0017578619256558487,(((Mycena_pearsoniana_LK880_2002:1.57138158037176E-6,(Mycena_pearsoniana_CBH068:1.57138158037176E-6,Mycena_pearsoniana_JV06890:1.57138158037176E-6):1.57138158037176E-6):0.04177315049852928,((Mycena_spp._Ecuador_TL8052:0.009967428007672903,Mycena_spp._Ecuador_TL9678:0.026835489890371145):1.57138158037176E-6,(Mycena_spp._Ecuador_TL9433:1.57138158037176E-6,Mycena_spp._Ecuador_TL9450:1.57138158037176E-6):0.014945138235318152):0.018931817052738113):0.006741815789332395,((Mycena_dura_Holotypus:0.027922791241971952,((Mycena_cf._pura_IX_CBH166:1.57138158037176E-6,Mycena_cf._pura_IX_CBH371:1.57138158037176E-6):1.57138158037176E-6,(Mycena_cf._pura_IX_CBH358:1.57138158037176E-6,Mycena_cf._pura_IX_CBH367:1.57138158037176E-6):1.57138158037176E-6):0.0715732070262881):0.005479684718661126,((Mycena_lammiensis_TUR165927:0.021740200795366267,(Mycena_pelianthina_CBH015:0.0024165951846337364,Mycena_pelianthina_CBH016:0.002602450757289913):0.024667704805063084):0.009994991042631239,(Mycena_cf._pura_X_BAP165A:0.04224334169544801,((Mycena_diosma_CBH400:1.57138158037176E-6,Mycena_diosma_LK1191_200:1.57138158037176E-6):0.08602965873990645,((Mycena_rosea_UP2:1.57138158037176E-6,(Mycena_rosea_CBH097:1.57138158037176E-6,Mycena_rosea_TL12393:1.57138158037176E-6):1.57138158037176E-6):1.57138158037176E-6,(Mycena_rosea_CBH383:1.57138158037176E-6,(Mycena_rosea_CBH409:1.57138158037176E-6,Mycena_rosea_TL12409:1.57138158037176E-6):1.57138158037176E-6):1.57138158037176E-6):0.02282163628909615):0.008366678048752399):1.57138158037176E-6):0.0024875339746747035):0.002584698344847324):0.005515626324408214):0.002578311435834396):0.0023659193782083073):0.0032391672464941084):1.57138158037176E-6):0.3442213007254913); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr68903] END;