#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 04, 2024; 9:54 GMT TreeBASE (cc) 1994-2008 Study reference: Sharma G., Gryzenhout M., Hyde K.D., Pinnaka A.K., & Shenoy B.D. 2013. First report of Colletotrichum asianum causing mango anthracnose in South Africa. Plant Disease, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S14807] [ The following blocks are input data for analysis step 12266 ] BEGIN TAXA; TITLE TaxaForAnalysisStep12266; DIMENSIONS NTAX=32; TAXLABELS 'Colletotrichum asianum Type_G' 'Colletotrichum cordylinicola Type_G' 'Colletotrichum fragariae Type_B' 'Colletotrichum fragariae Type_G' 'Colletotrichum fructicola Type_G' Colletotrichum_gloeosporioides_R 'Colletotrichum gloeosporioides Type_B' 'Colletotrichum horii Type_B' 'Colletotrichum horii Type_G' 'Colletotrichum hymenocallidis Type_G' 'Colletotrichum ignotum Type_R' 'Colletotrichum jasminisambac Type_G' 'Colletotrichum kahawae Type_B' 'Colletotrichum kahawae Type_G' 'Colletotrichum musae Type_C' 'Colletotrichum siamense Type_G' Colletotrichum_sp._MFLUCC11_0361 Colletotrichum_sp._MFLUCC11_0362 Colletotrichum_sp._MFLUCC11_0363 Colletotrichum_sp._MFLUCC11_0364 Colletotrichum_sp._MFLUCC11_0365 Colletotrichum_sp._MFLUCC11_0366 Colletotrichum_sp._MFLUCC11_0367 Colletotrichum_sp._MFLUCC11_0368 Colletotrichum_sp._MFLUCC11_0369 Colletotrichum_sp._MFLUCC11_0370 Colletotrichum_sp._MFLUCC11_0371 Colletotrichum_sp._MFLUCC11_0372 Colletotrichum_sp._MFLUCC11_0373 'Colletotrichum theobromicola Type_R' 'Colletotrichum tropicale Type_R' 'Colletotrichum xanthorrhoeae Type_B' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M41919] TITLE Colletotrichum_5tef1_gene; LINK TAXA = TaxaForAnalysisStep12266; DIMENSIONS NCHAR=627; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'Colletotrichum asianum Type_G' CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTTGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAAA-AAGAT-AGT--GGCAAGGGGTCTTTCAAATATGCCTG----TTGGACCCACTTTTTATTCCCCCGTAATGCTGCCGGAA--TA-CTGATCGTTTCTAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTCCGAAAACCTC--TTGTT----TGGGCGCAATTGTTCAGTGTGCAAATCTCTCACAAGGCACATGCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG 'Colletotrichum cordylinicola Type_G' CGACTCCGGCAAGTCGACCACCACTGTAAGCTTCCGCGCCCGCGACCGAACCGAAACAACACAATACTGACATGAGAGCAGGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGGTAAGTTGATGCCAATTTCTCTACCTAGGCAATGAATTCAGCTAATCTTTTGCGATCTAGCCGCCGAGTTG----------GTTTGTGATACCGCACGAAGTTCTGCCAAAATTTCAGTTACTGA------CAAATTCAAC-AG---GGCAAGGGTTCCTTCAAGTACGCTTG---------------------------------------------------------------GGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGTCTCATTTCCTCTCATTTCAAAG--------CAAAATCCGC-----------------------TTCA-------------------------------------------------------------GCGAATTTTGCCTG 'Colletotrichum fragariae Type_B' ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CATCGAGAAGTTCGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGTAAGAAAATTCCCCGCCTCATCACATCAGAAT-----------TTGTGTACTGA------CAA--TCCAC-AGC--GGCAAGGGTTCCTTCAAGTACGCCTG---------------------------------------------------------------GGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCCGCTACTATGTCACCGTCATTGGTAAGTTT---CCACTTGCAGTGAAGACTCGCTCTC------------TGTTTTGGACGGGCGCTGTTTTTCAGTGCGCGAAATTTTCACAAGCCACATATTCTGACATCACATTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG 'Colletotrichum fragariae Type_G' CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGTAAGAAAATTCCCCGCCTCATCACATCAGAAT-----------TTGTGTACTGA------CAA--TCCAC-AGC--GGCAAGGGTTCCTTCAAGTACGCCTG---------------------------------------------------------------GGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCCGCTACTATGTCACCGTCATTGGTAAGTTT---CCACTTGCAGTGAAGACTCGCTCTC------------TGTTTTGGACGGGCGCTGTTTTTCAGTGCGCGAAATTTTCACAAGCCACATATTCTGACATCACATTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG 'Colletotrichum fructicola Type_G' ????????????????????????T--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGGTAAGTCACAACCACATCCACCTAC------ATCAGAACAATAAACTGACTTCTCCAAAGCCGCCGAATTGTATTTTCA--ACCCGTCCCATCACATCATGGATCG-------TTCAAGTATTAA------CAAG-AAGAC-AGG--GGCAAGGGTTCGTTCAAATACGCATGG--TTGGGGTTCCCAGTTTAT----CCGCGACGCTGAGAATATTTT-CTGACTTTTCCCA--GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTTCGAAAACCTGTTTTTTTTGGATGGGGGC-ATTTTGCAGTGTGGAAATCTCTCATAAGACACACGCACTGACATGTCACTCAGACGCTCC??????????????????????? Colletotrichum_gloeosporioides_R ?????????????????????????????????????????????????????????????????????????????????????????????????????????GGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAG------------------------------------------------------------GCGGCTGAGCTCGGTTCGTAGAACACCATTCCTCGCATGATTTG----------CGAGTTTACTAA------CAAA-CGAAT-A----GGCAAGGGTTCATTCAAATACGCATG---TCCGGACCCAC-TTTTATACCCCCCTCATGCTGTCAACA--TA-CTGATTTTTCCCAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAATACTATGTTACCGTCATTGGTAAGTCTG----CTCTGCGCTGAAAATGCTCTCCCTGAAGACCAC--TCTTCTGGGCAGGCGCAACTTTCCA-CGGGCAAAATTCTGTCAAGGCAC--GCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG 'Colletotrichum gloeosporioides Type_B' ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CATCGAGAAGTTCGAGAAGGAG------------------------------------------------------------GCGGCTGAGCTCGGTTCGTAGAACACCATTCCTCGCATGATTTG----------CGAGTTTACTAA------CAAA-CGAAT-A----GGCAAGGGTTCATTCAAATACGCATG---TCCGGACCCAC-TTTTATACCCCCCTCATGCTGTCAACA--TA-CTGATTTTTCCCAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAATACTATGTTACCGTCATTGGTAAGTCTG----CTCTGCGCTGAAAATGCTCTCCCTGAAGACCAC--TCTTCTGGGCAGGCGCAACTTTCCA-CGGGCAAAATTCTGTCAAGGCAC--GCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG 'Colletotrichum horii Type_B' ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGTTTGTATA--------------------------------------------------------------------------------------ATCTG-TCCATCTCTTGATGAT-------------TCTGACTGACATCCACAAATCCGCCGAACTTGGCAAGGGTTCGTTTAAGTACGCATG----TCGGTCTTCC-CCGTTTTTTCCCGTGATGCTGTCAAAA--TA-CTGATTTCTCCCAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGTCGGGTTTCCCTACGCTGAGAATCCGCTCTTCAAAAATCGC--TATTTTGGATGGGCGC-ATTTTTCAGTGCGCAAATGTCTCACAAGGCACA--CACTGACATGTCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG 'Colletotrichum horii Type_G' CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAA------------------------------------------------------------------GGTTTGTATA------ATCTG-TCCATCTCTTGATGAT-------------TCTGACTGACATCCACAAATCCGCCGAACTTGGCAAGGGTTCGTTTAAGTACGCATG----TCGGTCTTCC-CCGTTTTTTCCCGTGATGCTGTCAAAA--TA-CTGATTTCTCCCAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGTCGGGTTTCCCTACGCTGAGAATCCGCTCTTCAAAAATCGC--TATTTTGGATGGGCGC-ATTTTTCAGTGCGCAAATGTCTCACAAGGCACA--CACTGACATGTCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG 'Colletotrichum hymenocallidis Type_G' CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAAA-AAGAT-AGT--GGCAAGGGCTCCTTCAAGTACGCTTG----GGTGGGTCGC----CGTTTCTTCGCGATCCTGAAATTG--TT-TTGCTGATTTCTCGCAGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGTCTGGCTTCCTTGCGCTGAAAATTGGCTGCCCGAATACCTC--TTTTTTGGATGGGCGCGATTTTGCAGTGTGGAAATCTCTCATAAGGCACACGCACTGACACATCACTCAGACGCTCCCG????????????????????? 'Colletotrichum ignotum Type_R' ?????????????????????????????????????????????????????????????????????????????????????????????????????????GGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGGTAAGTCACAACCACATCCACCTAC------ATCAGAACAATAAACTGACTTCTCCAAAGCCGCCGAATTGTATTTTCA--ACCCGTCCCATCACATCATGGATCG-------TTCAAGTATTAA------CAAG-AAGAC-AGG--GGCAAGGGTTCGTTCAAATACGCATGGGTTTGGGGTTCCCAGTTTAT----TCGCGACGCTGAGAATATTTT-CTGACTTTTCCCA--GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTAGCTTTCTTGCGCTGAAAATTGGCTCTTCGAAAACCTG-TTTTTTTGGATGGGCGCAATTTTTCAGTGTGTAAATCTCTCATACGACACACGCACTGACATGTCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG 'Colletotrichum jasminisambac Type_G' ??????????????????????????????????????????????????????????????????????????????????????????????????GTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAG------------------------------------------------------------GCTGCTGAGCTCGGTTCGTAGAACACCAACCCTCGCTTGACTTG----------CGAGTTTGCTAA------CAAA-CGAAT-A----GGCAAGGGTTCATTCAAATATGCTTG---TCGGGACCCACTTTTTATTCCCCCGTAATGCTGTCGAAA--TA-CTGACTGTTCCTAG-GGGTTCTTGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCTAAGTACTATGTCACCGTCATTGGTAAGTCTGCCTTCCTTGCGCTGAAAATTGGCTGCCCGAATACCTC--TTTTT-------------TTTTT????????????????????????????????????????????????????????????????????????????? 'Colletotrichum kahawae Type_B' ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CATCGAGAAGTTCGAGAAGGAG------------------------------------------------------------GCCGCCGAATTGTATTTCAC---CCCACCTCATCACATCATCGT------------CGTTTATTAA------CAAA-ACTAT-AGG--GGCAAGGGCTCCTTCAAGTATGCCTG--GGTCGGTTCCCC-----GTTTTCTCGCGATCCTGAAATTGTCTTGCTGACTCTCTACAG---GTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTACGTCACCGTCATTGGTAAGTC-GTTTTTCCTGCTCTGAAGATTCGCTCATCAAAAAC-----TCTTCTGGACGGGCGCAATTTTTCAGTGCTCAAACATCTCACAAGGCAC------TGACATGTCATTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG 'Colletotrichum kahawae Type_G' CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAG------------------------------------------------------------GCCGCCGAATTGTATTTCAC---CCCACCTCATCACATCATCGT------------CGTTTATTAA------CAAA-ACTAT-AGG--GGCAAGGGCTCCTTCAAGTATGCCTG--GGTCGGTTCCCC-----GTTTTCTCGCGATCCTGAAATTGTCTTGCTGACTCTCTACAG---GTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTACGTCACCGTCATTGGTAAGTC-GTTTTTCCTGCTCTGAAGATTCGCTCATCAAAAAC-----TCTTCTGGACGGGCGCAATTTTTCAGTGCTCAAACATCTCACAAGGCAC------TGACATGTCATTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG 'Colletotrichum musae Type_C' CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAA------------------------------------------------------------------GGTTTGCAC-------AGTCTCTCCGGCTCTTGATGAT-------------TCTGACTGACATCCCCAAATCCGCTGAACTTGGCAAGGGCAGCTTCAAATACGCATG----GTGCGATTCCCGAGAATATCTTCGCGACCCTGAGAATATCTT-CTAACTTTTCCCAG--GGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTTTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGTCCGGCTTTCTTGCGCTGAAAATTGGCTGTCCGAAATCCTC--TTTTTTGGATGGGCGCGATTTTGCAGTGTGGAAATCTCTCGCAAGGACCACGCACTGACATGTTATTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG 'Colletotrichum siamense Type_G' CGACTCTGGCAAGTCGACCA-CACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAG---------------------------------------------------------------GGTAAGTCACAACCACA--TCCAGCTACATCAGAACAACAA-----------------ACTAACTTCTCCAAG-CCGCCGAGTTGGGCAAGGGCTCCTTCAAGTACGCCTG---GGTGGGTCGCC-----GTCTCTTCGCGATCCTGAAATTG--TT-TTACTTATTTTTCGCAGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTAGCGCTGAAAATTGGCTGTCCCACAACCTC--TTTTTTGGATGGGCGCGATTTTGCAGTGTGGAAATCTCTCATAAGACACACTCACTGACATGTCTCTCAGACGCTCCCGGTCACCGGTGACTTCATCAAG Colletotrichum_sp._MFLUCC11_0361 CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTTGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAGA-AAGAT-AGT--GGCAAGGGGTCTTTCAAATATGCCTG----TTGGACCCAC-TTTTATTCCCCCGTAATGCTGCCGGAA--TA-CTGATCGTTTCTAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTCCGAAAACCTC--TTGTT----TGGGCGCAATTGTTCAGTGTGCAAATCTCTCACAAGGCACATGCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG Colletotrichum_sp._MFLUCC11_0362 CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTTGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAGA-AAGAT-AGT--GGCAAGGGGTCTTTCAAATATGCCTG----TTGGACCCAC-TTTTATTCCCCCGTAATGCTGCCGGAA--TA-CTGATCGTTTCTAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTCCGAAAACCTC--TTGTT----TGGGCGCAATTGTTCAGTGTGCAAATCTCTCACAAGGCACATGCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG Colletotrichum_sp._MFLUCC11_0363 CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTTGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAGA-AAGAT-AGT--GGCAAGGGGTCTTTCAAATATGCCTG----TTGGACCCAC-TTTTATTCCCCCGTAATGCTGCCGGAA--TA-CTGATCGTTTCTAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTCCGAAAACCTC--TTGTT----TGGGCGCAATTGTTCAGTGTGCAAATCTCTCACAAGGCACATGCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG Colletotrichum_sp._MFLUCC11_0364 CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTTGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAGA-AAGAT-AGT--GGCAAGGGGTCTTTCAAATATGCCTG----TTGGACCCAC-TTTTATTCCCCCGTAATGCTGCCGGAA--TA-CTGATCGTTTCTAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTCCGAAAACCTC--TTGTT----TGGGCGCAATTGTTCAGTGTGCAAATCTCTCACAAGGCACATGCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG Colletotrichum_sp._MFLUCC11_0365 CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTTGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAGA-AAGAT-AGT--GGCAAGGGGTCTTTCAAATATGCCTG----TTGGACCCAC-TTTTATTCCCCCGTAATGCTGCCGGAA--TA-CTGATCGTTTCTAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTCCGAAAACCTC--TTGTT----TGGGCGCAATTGTTCAGTGTGCAAATCTCTCACAAGGCACATGCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG Colletotrichum_sp._MFLUCC11_0366 CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTTGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAGA-AAGAT-AGT--GGCAAGGGGTCTTTCAAATATGCCTG----TTGGACCCAC-TTTTATTCCCCCGTAATGCTGCCGGAA--TA-CTGATCGTTTCTAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTCCGAAAACCTC--TTGTT----TGGGCGCAATTGTTCAGTGTGCAAATCTCTCACAAGGCACATGCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG Colletotrichum_sp._MFLUCC11_0367 CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTTGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAGA-AAGAT-AGT--GGCAAGGGGTCTTTCAAATATGCCTG----TTGGACCCAC-TTTTATTCCCCCGTAATGCTGCCGGAA--TA-CTGATCGTTTCTAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTCCGAAAACCTC--TTGTT----TGGGCGCAATTGTTCAGTGTGCAAATCTCTCACAAGGCACATGCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG Colletotrichum_sp._MFLUCC11_0368 CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTTGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAGA-AAGAT-AGT--GGCAAGGGGTCTTTCAAATATGCCTG----TTGGACCCAC-TTTTATTCCCCCGTAATGCTGCCGGAA--TA-CTGATCGTTTCTAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTCCGAAAACCTC--TTGTT----TGGGCGCAATTGTTCAGTGTGCAAATCTCTCACAAGGCACATGCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG Colletotrichum_sp._MFLUCC11_0369 CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTTGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAGA-AAGAT-AGT--GGCAAGGGGTCTTTCAAATATGCCTG----TTGGACCCAC-TTTTATTCCCCCGTAATGCTGCCGGAA--TA-CTGATCGTTTCTAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTCCGAAAACCTC--TTGTT----TGGGCGCAATTGTTCAGTGTGCAAATCTCTCACAAGGCACATGCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG Colletotrichum_sp._MFLUCC11_0370 CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTTGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAGA-AAGAT-AGT--GGCAAGGGGTCTTTCAAATATGCCTG----TTGGACCCAC-TTTTATTCCCCCGTAATGCTGCCGGAA--TA-CTGATCGTTTCTAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTCCGAAAACCTC--TTGTT----TGGGCGCAATTGTTCAGTGTGCAAATCTCTCACAAGGCACATGCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG Colletotrichum_sp._MFLUCC11_0371 CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTTGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAGA-AAGAT-AGT--GGCAAGGGGTCTTTCAAATATGCCTG----TTGGACCCAC-TTTTATTCCCCCGTAATGCTGCCGGAA--TA-CTGATCGTTTCTAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTCCGAAAACCTC--TTGTT----TGGGCGCAATTGTTCAGTGTGCAAATCTCTCACAAGGCACATGCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG Colletotrichum_sp._MFLUCC11_0372 CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTTGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAGA-AAGAT-AGT--GGCAAGGGGTCTTTCAAATATGCCTG----TTGGACCCAC-TTTTATTCCCCCGTAATGCTGCCGGAA--TA-CTGATCGTTTCTAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTCCGAAAACCTC--TTGTT----TGGGCGCAATTGTTCAGTGTGCAAATCTCTCACAAGGCACATGCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG Colletotrichum_sp._MFLUCC11_0373 CGACTCTGGCAAGTCGACCACCACT--------------------------------------------------------GGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTTGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGCAAGTACC--ACCTT-TCCATCACATCATCGT------------CATTTACTAA------CAGA-AAGAT-AGT--GGCAAGGGGTCTTTCAAATATGCCTG----TTGGACCCAC-TTTTATTCCCCCGTAATGCTGCCGGAA--TA-CTGATCGTTTCTAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGAAAATTGGCTCTCCGAAAACCTC--TTGTT----TGGGCGCAATTGTTCAGTGTGCAAATCTCTCACAAGGCACATGCACTGACACATCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG 'Colletotrichum theobromicola Type_R' ?????????????????????????????????????????????????????????????????????????????????????????????????????????GGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTGTAAGAAAATTCCCCGCCTCATCACATCAGAAT-----------TTGTGTACTGA------CAA--TCCAC-AGC--GGCAAGGGTTCCTTCAAGTACGCCTG---------------------------------------------------------------GGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCCGCTACTATGTCACCGTCATTGGTAAGTTT---CCACTTGCAGTGAAGACTCGCTCTC------------TGTTTTGTACGGGCGCTGTTTTTCAGTGCGCGAAATTTTCACAAGCCACATATTCTGACATCACATGCAGACGCTCCCGGTCACC-GTGACTTCATCAAG 'Colletotrichum tropicale Type_R' ?????????????????????????????????????????????????????????????????????????????????????????????????????????GGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAG------------------------------------------------------------GCTGCCGAGCTCGGTTCGTAGAACACCAACCCTCGCTTGACTTG----------CGAGTTTGCTAA------CAAA-CGAAT-A----GGCAAGGGTTCATTCAAATATGCTTG----TGGGCCCCACTTTTTATTCCCCCGTAATGCTGTCGAAA--TA-CTGACTCTTCCCAG-GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGTCTGGCTTTCTTGCGCTGTAAATTGGCTCTCCGAAAATCTC-TTTTTTTGGATGGGCGCAATTTCTCAGTGTGCAAA--TCTCATACGACACACGCACTGACATGTCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG 'Colletotrichum xanthorrhoeae Type_B' ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CATCGAGAAGTTCGAGAAGGAG------------------------------------------------------------GCTGCTGAACTGCATGTGTA--ACCCA-TCAATCACACCATGGTT-----------CATTTACTAA------CTGA-GAGAT-AGC--GGCAAGGGTTCTTTCAAATACGCCTG---GTTGGAAATCC---CCGTCTTTTCGCGATCCTGAGAAAATTTGACTGACTCTGTACAG--GGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGCGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACCCCCAGGTACTACGTCACCGTCATTGGTAAGTTGATATTTCATGCTCTGAAAATTCGCTCTCCGAAACCCAC--CATTTTGGATGGGCGCAATATTTCGGTGCGCGAATTTCTCACCAGG-ACACGCACTGACATGTCACTCAGACGCTCCCGGTCACC-GTGACTTCATCAAG ; END; BEGIN SETS; CHARSET excluded (CHARACTERS = Colletotrichum_5tef1_gene) = 26-81 145-204 249-260 271-276 281 287 291-292 319-322 333 361-362 365 380 526-527 613; END; [ The following blocks are output data for analysis step 12266 ] BEGIN TREES; TITLE Colletotrichum_5tef1; LINK TAXA = TaxaForAnalysisStep12266; TREE Strict = [&R] ('Colletotrichum cordylinicola Type_G':0.164089,(('Colletotrichum horii Type_B':0.013118,'Colletotrichum horii Type_G':0.0):0.120876,(((Colletotrichum_gloeosporioides_R:0.0,'Colletotrichum gloeosporioides Type_B':0.0):0.114823,('Colletotrichum jasminisambac Type_G':0.02685,'Colletotrichum tropicale Type_R':0.017495):0.017929):0.082765,(((('Colletotrichum fructicola Type_G':0.004545,'Colletotrichum ignotum Type_R':0.009326):0.080101,('Colletotrichum musae Type_C':0.143867,('Colletotrichum hymenocallidis Type_G':0.0354,'Colletotrichum siamense Type_G':0.107196):0.048267):0.016756):0.012326,('Colletotrichum xanthorrhoeae Type_B':0.115834,(('Colletotrichum kahawae Type_B':0.0,'Colletotrichum kahawae Type_G':0.0):0.088405,('Colletotrichum fragariae Type_B':0.0,'Colletotrichum fragariae Type_G':0.0,'Colletotrichum theobromicola Type_R':0.006468):0.184521):0.046071):0.036428):0.04464,('Colletotrichum asianum Type_G':0.0,(Colletotrichum_sp._MFLUCC11_0361:0.0,Colletotrichum_sp._MFLUCC11_0362:0.0,Colletotrichum_sp._MFLUCC11_0363:0.0,Colletotrichum_sp._MFLUCC11_0364:0.0,Colletotrichum_sp._MFLUCC11_0365:0.0,Colletotrichum_sp._MFLUCC11_0366:0.0,Colletotrichum_sp._MFLUCC11_0367:0.0,Colletotrichum_sp._MFLUCC11_0368:0.0,Colletotrichum_sp._MFLUCC11_0369:0.0,Colletotrichum_sp._MFLUCC11_0370:0.0,Colletotrichum_sp._MFLUCC11_0371:0.0,Colletotrichum_sp._MFLUCC11_0372:0.0,Colletotrichum_sp._MFLUCC11_0373:0.0):0.002273):0.069037):0.01646):0.048075):0.164089); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr105873] END;