#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 10, 2026; 2:52 GMT TreeBASE (cc) 1994-2008 Study reference: Cannon C., & Manos P. 2001. Combining and comparing morphometric shape descriptors with a molecular phylogeny: the case of fruit type evolution in Bornean Lithocarpus (Fagaceae). Systematic Biology, 50(6): 860-880. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S781] [ The following blocks are input data for analysis step 1243 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1243; DIMENSIONS NTAX=24; TAXLABELS Chrysolepis_chrysophylla Lithocarpus_beccarianus Lithocarpus_bennettii Lithocarpus_blumeanus Lithocarpus_clementianus Lithocarpus_conocarpus Lithocarpus_densiflorus Lithocarpus_echinifer Lithocarpus_enclesiacarpus Lithocarpus_havilandii Lithocarpus_kalkmanii Lithocarpus_keningauensis Lithocarpus_lampadarius Lithocarpus_lucidus Lithocarpus_luteus Lithocarpus_palungensis Lithocarpus_pulcher Lithocarpus_revolutus Lithocarpus_rotundatus Lithocarpus_ruminatus Lithocarpus_sericobalanus Lithocarpus_turbinatus Quercus_acutissima Quercus_alba ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M838] TITLE ITSEFACML; LINK TAXA = TaxaForAnalysisStep1243; DIMENSIONS NCHAR=991; FORMAT DATATYPE=Standard SYMBOLS= "0 1 A G C T 2" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Chrysolepis_chrysophylla TCGAAACTTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG-C-GGGGGGCGCCCGTCGCCCCCTCGCCCCCCCCCTCGCGGGCGGGG--AC-CTCGCGTC-TCCC--GCCC-GCAAACCTAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGCGCGCCCCCGGGTTCGGCGCCTT-ACGAACTATTCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCTTTC--GGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCCCCCC--AAA-CTCCGG-TTCGGG-CGGGG-CGGAAGTTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGCCGTGCGCGCCCC-GTCGCCCGAACGCGCTCCTAC-GACCCTC---GCGCGTCGCC---TCGGCGGCG---CTC-----CCAACGC------0000000000000000000000010000000000000000000001000000000000011100000010000000000000000000001100000000000001100000010000000000000000000010000000000000000001000010000000000000000000000000000000000000011000010000000000000000000000000000000010000000000000000000000000000010000000000000000000010000000000001011000100000000000000000000010000000000000011 Lithocarpus_beccarianus TCGAAACCTGCGCAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG-CGGGGGGGCGCCCGTCGCCCCCTCG-CCCCCCTCTCGCGGGCGGGG--AC-CTCGCGTC-TCTC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCCAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCGAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCACCCCC-AAACCTCCGAGTTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGGGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCT-GACGCCCG------GTCTCGA-GACCCTC---GCGCGCCGCC---TCGGCGGCG---CTC-----ACAACGC------1000000000000110010000000000000000000100000000000110011111111100000000000000000000100000000000010011111111100000000000000000000100000001111111110111111111000000000000000000100000000111111000111111111000000000000000000100000000001111100000000000000000100000000111100000000000000000100000000000000110111011000000000000000001000000000000000001111111 Lithocarpus_bennettii TCGAAACCTGCACAGCAGAACGACCCGCGCACCGTTGACAACCGACGGGGGG---------CGCTCGTCG---------CCCCCCTCTCGCGG-CGGGG--AC-TTCGCGTC-TCCT--GCCC-GCAAACCGAACCCCGGCACGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGTCGGAGGCCCCTGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTCGTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCC----AAACCTCCGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCATGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGTCGCC---TCGGCGGCG---CTC-----ACAACGC------0000010100001110010000000000010000000000000000000000000000001100000000000010000000000000000100000000000001100000000000010000000000000000000000000000011111000000000010000000000000000000000000000111111000000000010000000000000000000000000000000010000000000000000000000000000010000000000000000000000000000111000000000100000000000000110000000000000011 Lithocarpus_blumeanus TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG---------CGCTCGCCG----------CCCCCTCTCGCGGGCGGGG--AC-CTCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCAAAGGAAATCGAA-CCAAGAGA-GCCGCGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTTGTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCC---AAACCTCCGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCAGTCGTGCGCGCCCC-GCCGTCCG------GCCTCGA-GACCCTC---GCGCGTCGCC---TCGGCGGCG---CTC-----ACAACGCGACCC-0000010100001110010000000001000000000000000000000000000011111100000000001000000000000000000000000000000111100000000001000000000000000000000000000000000111000000001000000000000000000000000000000000111000000001000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000111000000010000000000000000110000000000000011 Lithocarpus_clementianus TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGGGC-GGGGGGCGCTCGTCGCCCCTGCG-CCCCCCTCCCGCGGGCGGGG--AC-CTCGCGCC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCCT-GCGAACTGTACAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCATTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTCGCCCCCCCC---AAACCTCCGGGTTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAACCGGTGGTTCTCCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGCCGCCGCCTCGGCGGCG---CTC-----GCAACGC------0000000000000110010000000000000000000000000100000000000111111100000000000000000000000000100000000000011111100000000000000000000000000100000000000000111111000000000000000000000000100000000000001111111000000000000000000000000100000000000000000000000000000000100000000000000000000000000000101100000000011011000000000000000000000001001011100000000111 Lithocarpus_conocarpus TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG--------GCGCTCGTCG---------CCCCCCTCTCGCGGGCGGGGG-AC-CTCGCGTC-TCCT--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGTCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTTGTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCCC--AAACCTCCGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GCCTCGA-GACCCTC---GCGCGTCGCC---TCGGCGGCG---CTC-----ACAACGCGACCCC0100011100000110010000000000000100000000000000000000000000000100000000000000100000000000000000000000000000100000000000000100000000000000000000000000000011000000000000100000000000000000000000000001111000000000000100000000000000000000000000000000100000000000000000000000000000100000000000000000000000000111000000000001000000000000110000000000000011 Lithocarpus_densiflorus TCGAAACCTGCACAGCAGAACGACCCGCGAACTGGTTACAACCGACGGGAGG--GGGGGGGCGCTCGTCGAGTGCTCG----CCCCCCTGCGGGC------------------TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGCCTT-ACGAATTATTCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCATTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCC---GAA-CTCCGG-TTCGGG-CGGGGGCGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAATGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTTTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GTCGCCCGAACGCGCTCCTCC-GACCCTC---GCGCGCCGTCGCCTCGGCGGCGGCGCTC-----CCAACGCGACCCC0000000010000000100100100000000000000000000000000000000000000010000100000000000000000000000000000000000000010000100000000000000000000000000000000000000000100100000000000000000000000000000000000000000100100000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000000000 Lithocarpus_echinifer TCGAAACCTGCACAGCAGAACTACCCGCGAACCGGTGACAACCGACGGGGGG---------CGCTCGTCG---------CCCCCCTCTCGCAGGCGGGG--AC-CTCGCGTC-TCCT--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGTCCCCCCCC--AAATCTCCGGGTTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCTCGCCGCC---TCGGCGGCG---CTC-----ACAACGC------0000010100000210010000000100000000000000000000000010011111111100000000100000000000000000000000000001111111100000000100000000000000000000001111110111111111000000100000000000000000000001111000111111111000000100000000000000000010100111100000100000000000000000010011100000100000000000000000000010110010111011000001000000000000000000000000000100011111 Lithocarpus_enclesiacarpus TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAA--------------------------------------CCCCCCTCTCGCGGGCGGGG--AC-CTCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCGCGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGGCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTCGTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCACCCC-AAACCTCCGGGCTAGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GCCTCGA-GACCCTCCTCGCGCGTCGCC---TCGGCGGCG---CTCGCATCACAACGCGACCCC0000010100001110011000000000001000000000000011000000000000011100000000000001000000000000011100000000000001100000000000001000000000000000000000000000001111000000000001000000000000000000000000000011111000000000001000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000111000000000010000000000000110000000000000011 Lithocarpus_havilandii TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG---------CGCTCGTCG---------CCCCCCCCTCGCGGGCGGGG--AC-CTCGCGTC-TCCC--GCCACGCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTTTACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTTGTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCCC--AAACCTCCGGGCTCGGG-CGGGG-CGGAAGCTGGC-TCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GTCGCCCG------GCCTCGA-GACCCTC---GCGCGTCGCC---TCGGCGGCG---CTC-----ACAACGCGACCCC0000110100101110010000000000100000000000000011000000000000011100000000000100000000000000011100000000000001100000000000100000000000000010000000000000000001000000000100000000000000000000000000000000001000000000100000000000000000000000100000000100000000000000000000000000000100000000000000010000000000001011000000001000000000000000010000000000000011 Lithocarpus_kalkmanii TCGATGCCTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG-C-GGGGGGCGCCCGTCGCCCCCTCG-CCCCCCTCTCGCGGGCGGGG--AC-CTCGCGTC-TCTC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCCAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGCGCGCCCCCGGCGTCGGCGCCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTCGCCCCCCCCC--AAACCTCCGAGTTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GGCCCTC---GCGCGTCGCC---TCGACGGCG---CTC-----ACAACGCGACCC-0000000000000110010000000000000000000010000000011110011111111100000000000000000000010000000001110011111111100000000000000000000010000000111111110111111111000000000000000000010000011111111000111111111000000000000000000010000000011111100000000000000000010000001111100000000000000000010000000000001110111011000000000000000000100000000000000011111111 Lithocarpus_keningauensis TCGAAACCTGCCCCGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG-CGGGGGGGCGCTCGTCGCCCCCGCG-CCCCCCTCTCGGGGGCGGGGG-AC-CTCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAGTCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACCGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCCCTCGGGGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTCGCCCCCCCCC--GAGCCTCCGGGCCCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAACCGGTGGTTCTCCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGCCGCCGCCCCGGCGGCG---CTC-----GCAACGC------1100000000002110010100000000000000000000001000111110011111111100000000000000000000000001000011110011111111100000000000000000000000001000011111110111111111000000000000000000000001011111111000111111111000000000000000000000001000000011100000000000000000000001000001100000000000000000000001000000000110111011000000000000000000000010000000000000111111 Lithocarpus_lampadarius TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAACTGACGGGGGG--------GCGCTCGTCGCCCC-TCG-CCCCCATTCCGGGGGCGGGGGGAC--TCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCCC-ACGAACTGTACAGAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCCC--AAACCTCCGGGTTCGGG-CGGGG-CGAAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAACCGGTGGTTCTCCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGTCGCCGCCTCGGCGGCG---CTC-----ACAACGCGACCC-0110011000000110010100000000000000010000000000000000000000000011100000000000000010000000000000000000000000011100000000000000010000000000000000001111111111000000000000000010000000000000000011111111111000000000000000010000000000000000000000000000000010000000000000000000000000000010000000000100000000011011000000000000000100000000000111100000000111 Lithocarpus_lucidus TCGAAACCTGCCCCGCAGAACGACCCGCGAACGGGTGACAACCGACGGGGGG---------CGCTCGTCG----------CCCCCTCTCGCGGGCGGGG--AC-CCCGCGTC-TCCC--GCCC-GCAAACCAAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCGCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCATTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTCGCCCCCCCC-TCAAACCTCCGGGTTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTCCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGCCGCCGCCCCGGCGGCG---CTC-----GCAACGCGACCC-0000010100000110010100001000000000000000000000000000000000111100000001000000000000000000000000000000000011100000001000000000000000000000000000000001111111000001000000000000000000000000000000011111111000001000000000000000000000000000000001000000000000000000000000000001000000000000000000001100000000011011000010000000000000000000001011100000000111 Lithocarpus_luteus TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG---------CGCTCGTCG---------CCCCCCTCTCGCGGGCGGGG--AC-CTCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGAGACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGG-TCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCATTC---GCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCCC--AAACCTCCGGGTCCGGG-CGGGG-CGGAAGCTGGCCTCCCGCGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACGATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GCCTCGA-GACCCTC---GCGCGTCGCC---TCGGCGGCG---CTC-----ACAACGC------0000010100000110010000000000000010000000000000000000000001111100000000000000010000000000000000000000001111100000000000000010000000000000000000000011111111000000000000010000000000000000000001111111111000000000000010000000000000000000000000000000010000000000000000000000000000010000000000001100000000011011000000000000100000000000000111100000000111 Lithocarpus_palungensis TCGAAACCTGCCCCGCAAAACGACCCGCGAACCGGTGACAACCGACGGGGGG-CGGGGGGGCGCTCGC-GCCCCCGCG-CCCCCCCCTCGCGGGCGGGGG-AC-CTCGCGTC-TCCC--GCCC-ACAGACCGAACCCCGGCGCGGAACGCGCCAAGGAAGTCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACCGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAAGCCCCTCGGGACCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTCGCCCCCCCCC--AAACCTCCGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGCGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAACCGGTGGTTCTCCGACCCTCGATCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGC------GCCCCAGCGGCG---CTC-----GCAACGCGACCCC1100000000002110010100000000000000000001000000000001111111111100000000000000000000001000000000001111111111100000000000000000000001000000000001110111111111000000000000000000001000000000111000111111111000000000000000000001000001100111100000000000000000001000010011100000000000000000001000000001110010111011000000000000000000010000000000011100011111 Lithocarpus_pulcher TCGAAACCTGCCCCGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG-CGGGGGGGCGCTCGCCGCCCCCGCG-CCCCCCCCTCGGGGGCGGGGG-AC-CCCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAGTCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGGCACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCGAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCCCTCGGGGCTGAGGGCACGTCTGCCTGGGTGTCACGCACCGTCGCCCCCCCC---AAACCTCCGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAACCGGTGGTTCAACGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCG-CGCCGCCCCGGCGGCG---CTC-----GCAACGCGACCCC1100000000002110010100000000000000000000100000000001111111111100000000000000000000000100000000001111111111100000000000000000000000100000000111110111111111000000000000000000000100000011111000111111111000000000000000000000100001100111100000000000000000000100010011100000000000000000000100000010110010111011000000000000000000001000000000011100011111 Lithocarpus_revolutus TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACGACCGACGGGGGG---------CGCTCGTCGCCCCC-------CCCCCTCGCGGGCGGGG--AC-CTCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACG-GC-AAGGAAACCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATATAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAG-GCC--TC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCCTCCAGACCTCCGGGCCGGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGCCGCC---TCGGCGGCG---CTC-----ACAACGCGACCC-0000010000000110010000000000000000100000000000000000000000000011100000000000000100000000000000000000000000011100000000000000100000000000000000001111111111000000000000000100000000000000000111111111111000000000000000100000000000000001100000000000000100000000000000100000000000000100000000000000000001111011000000000000001000000000000000100000000111 Lithocarpus_rotundatus TCGAAACCGGCACGGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG---------CGCTCGTCG----------CCCCCTCCAGCGGGCGGGG--AC-CTCGCGTC-TCTC--GCGC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAACCGAA-CCAAGAGA-GCCGCGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGCCGGCGTCTT-ACGAACCGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAG-GCCACTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCCC--AAGCCCCCGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACGATCGGTGGTTCTTCGGCCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GCCTCGA-GACCCTC---GCGCGCCGCC---CCGGCGGCG---CTC-----ACAACGCGACCC-0000010100000110010000000010000000000000000000111110011111111100000000010000000000000000000011110011111111100000000010000000000000000000000011110111111111000000010000000000000000000000011000111111111000000010000000000000000000011111100000010000000000000000001111100000010000000000000000000001110010111011000000100000000000000000000000001100011111 Lithocarpus_ruminatus TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAAACGACGGGGGA--------GCGCCCGTCG---------CCCCCCTCTCGCGTGCGGGG--AC-CTCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGCTTTTGAACGCAAGTTGCGCCCGAA-GCCACTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCTCC----AACCCTCTGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGTGCCCGCGCG----CGCGGTTAGCCTAAAAGCGAGTCCTCGGTGACGAGCGCCACGACAATCGGTGGTTGTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGTCGCC---TCGGCGGCG---CTC-----ACAACGC------0000011100000110010000000000000001000000000000000000111111111100000000000000001000000000000000000111111111100000000000000001000000000000000000110111111111000000000000001000000000000000000111111111111000000000000001000000000000100111100000000000001000000000000111100000000000001000000000000000000001111011000000000000010000000000000000000000001111 Lithocarpus_sericobalanus TCGAAACCTGCCCCGCAGAACGACCCGCGAAC-GGTGACAACCGACGGGGGG---------C-CTCGGCG----------CCCCCTCTCGCGGGCGGGGG-AC-CTCGCGTC-TCCCT-GCCC-GCAAACCGAACCC-GGCGCGGAACGCGCCAAGGAAGTCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGGCACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACCGTCCAGAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAA-GCCCCTCGGGGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTCGCCCCCCCC---GAGCCTACGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAACCGGTGGTTCTCCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGCCGCCGCCCCGGCGGCG---CTC-----GCAACGCGACCCC1100010100002110010100000000000000000000010000000000001111111100000000000000000000000010000000000000111111100000000000000000000000010000000000010111111111000000000000000000000010000000001000111111111000000000000000000000010010100111100000000000000000000010000111100000000000000000000010000000010010111011000000000000000000000100000001100000000111 Lithocarpus_turbinatus TCGAAGCCTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG-CAGGGGGGCGCCCGTCGCCCCCTCG-CCCCCCTCTCGCGGGCGGGG--AC-CTCGCGTC-TCTC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCCAA-CCAAGAGA-GCCACGTCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCCC--AAACCTCCGAGTTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTGTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GTGCGTCGCC---TCGGCGGCG---CTC-----ACAACGC------2000000000000110010000000000000000001000000000001110011111111100000000000000000001000000000000110011111111100000000000000000001000000001111111110111111111000000000000000001000000001111111000111111111000000000000000001000000000011111100000000000000001000000001111100000000000000001000000000000001110111011000000000000000010000000000000000011111111 Quercus_acutissima TCGAAACCTGCACAGCAGAACGACCCGCGAATTGGTTACAACCGACGGGGGG-C-GGGGGGCGCTCGTCGCCCCCTCG---CCCCCCCTGCGGGCGGGGAGAC-CT-------------GCCT-GCAAACCGAACCCCAGCGCGGAACGCGCCAAGGAAATCTAA-CCAAGAGA-GCCACGCTGGAGGCCCCGGACACGGTGTGCCCCCGACGTCGGCGCTTT-ACGAATTATTCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCTGAA-GCCATTC--GGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCCCC----AAA-CTCCGG-TTCGGG-CGGGG-CGGAAGTTGGCCTCCCGTGCGTGCCTGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTTTCTTGCCCTCGTTCCTCGTCGTGCGCGCCCC-GTCGCCCGAACGCGCTC-CTC-GACCCTC---ACGCGTCGTCGCCTCGGCGGCG---CTC-----CCAACGCGACCCC0210000000000000000110000000000000000000000000000000000000000010110000000000000000000000000000000000000000010110000000000000000000000000000000000000000000110000000000000000000000000000000000000000000110000000000000000000000000000000010000000000000000000000000000010000000000000000000000000000000000000001100000000000000000000000000000000000000001 Quercus_alba TCGAAACCTGCCCAGCAGAACGACCCGCGAATTGGTTACAACCGACGGGGGG-C-GGGGGGCGTTCGTCGCCCCCTCG--CCCCCTCCTGCGGGGGGGG--AC-CTCGCGTC-TCCT--GCCC-GCAGACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCTAA-CCAAGAGA-GCCATGTCGGAGGCCCCGGACACGGTGTGCCCCCGGCGTCGGCGTCTT-ATGAATTATTCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCATTC--GGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCCCCC---AAA-CTCCGG-TTCGGG-CGGGG-CGGAAGTTGGCCTCCCGTGCGTGCCTGCACG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTTTTTTACCCTCGTTCCTCGTCGTGCGTGCCCC-GTCGCCCGAACGCGCTCCTGC-GACCCTC---ACGCGTCGCC---TCGGTGGCG---CTC-----CCAACGC------0000000000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000010000000000000000000000000000000000000000 ; END; BEGIN SETS; CHARSET dna (CHARACTERS = ITSEFACML) = 1-645; CHARSET code58 (CHARACTERS = ITSEFACML) = 240-404; CHARSET itsegscml (CHARACTERS = ITSEFACML) = 1-52 54-78 84-112 114-117 120-416 421-566 568-588 590-621 625-627 633-648 650 652 654 656 658-660 662-665 711-755 801-845; CHARSET itsefaclu (CHARACTERS = ITSEFACML) = 1-52 54-78 84-112 114-117 120-416 421-566 568-588 590-621 625-627 633-648 650 652 654 656 658-660 662-665 846-878 909-949; CHARSET indels (CHARACTERS = ITSEFACML) = 646-648 650 652 654 656 658-660 662-665; CHARSET its2 (CHARACTERS = ITSEFACML) = 405-645; CHARSET itsefacml (CHARACTERS = ITSEFACML) = 1-52 54-78 84-112 114-117 120-416 421-566 568-588 590-621 625-627 633-648 650 652 654 656 658-660 662-710 756-800; CHARSET its1 (CHARACTERS = ITSEFACML) = 1-239; CHARSET itsegsclu (CHARACTERS = ITSEFACML) = 1-52 54-78 84-112 114-117 120-416 421-566 568-588 590-621 625-627 633-648 650 652 654 656 658-660 662-665 879-908 950-991; CHARSET onegap (CHARACTERS = ITSEFACML) = 53 79-83 113 118-119 417-420 567 589 622-624 628-632; END; BEGIN ASSUMPTIONS; WTSET ITSMRIS = 0.5: 823 860 893 922-923 , 0.51: 745 , 2.23: 815 , 0.64: 964 986 , 0.36: 971 , 0.06: 737 739 742 750 774 781 830 , 0.0: 666-667 670-672 676-677 682-683 685 687 689 696-697 711-712 714-717 721-722 727-728 730 732 734 744 757-758 760 765 767-768 771-772 775-777 779 791 802-803 805 808 810 813 816-818 820-822 824 835 839 , 0.42: 699 770 , 0.3: 692 698 , 0.95: 741 , 0.04: 720 726 748 , 0.82: 983 , 0.35: 789 829 , 0.45: 814 944 972 , 0.13: 684 709 756 , 0.12: 735 762 764 792-793 811 844-845 , 0.68: 831 , 0.94: 680 , 0.91: 834 , 1.5: 769 , 0.2: 754 788 , 2.73: 963 , 0.26: 674 , 0.02: 701-702 713 753 795 , 0.09: 675 759 780 799 807 909 914 929 935 937 940 947 951-952 954 956 958-961 965-966 968-970 973-977 981-982 990-991 , 0.22: 673 , 0.88: 725 , 0.01: 669 736 749 763 766 796 , 0.25: 801 , 0.34: 731 806 , 0.18: 752 778 930 934 950 953 955 957 978 980 984-985 , 0.08: 681 704 785-786 800 , 0.83: 875 , 0.39: 809 , 0.05: 668 703 747 784 828 841 843 910-911 913 915-916 918-921 925 927-928 932-933 936 938 946 948-949 , 6.83: 868 901 , 0.17: 846-853 855-858 861-862 864-867 869-871 873 877-891 894-895 897-899 902 905 , 1.36: 679 , 0.73: 987 , 0.27: 939 962 967 979 , 0.1: 836 , 0.03: 678 691 705 708 723 , 0.38: 826 , 0.28: 773 , 0.84: 694 , 0.31: 686 693 719 729 838 , 0.33: 854 859 863 872 874 892 896 900 903-904 908 , 4.44: 733 , 0.11: 790 798 , 0.19: 706 710 755 761 , 1.38: 724 , 0.15: 707 787 812 840 , 0.55: 989 , 0.29: 738 743 804 , 0.16: 819 825 , 0.07: 690 797 , 0.93: 833 , 0.62: 695 827 , 0.21: 751 837 842 , 4.03: 688 , 0.23: 924 , 0.14: 794 912 917 926 931 945 , 0.32: 718 782 941-942 ; END; [ The following blocks are output data for analysis step 1243 ] BEGIN TREES; TITLE Tb6019; LINK TAXA = TaxaForAnalysisStep1243; TREE Fig._7 = [&R] (Quercus_acutissima,(Quercus_alba,(Lithocarpus_densiflorus,(Chrysolepis_chrysophylla,(Lithocarpus_luteus,(Lithocarpus_lampadarius,(Lithocarpus_clementianus,(Lithocarpus_lucidus,((Lithocarpus_palungensis,Lithocarpus_pulcher),(Lithocarpus_sericobalanus,Lithocarpus_keningauensis))Section_Synaedrys_sensu_stricto))),((Lithocarpus_ruminatus,((Lithocarpus_echinifer,(Lithocarpus_beccarianus,(Lithocarpus_turbinatus,Lithocarpus_kalkmanii))Section_Lithocarpus_sensu_stricto),(Lithocarpus_rotundatus,Lithocarpus_revolutus))),(Lithocarpus_bennettii,(Lithocarpus_enclesiacarpus,(Lithocarpus_blumeanus,(Lithocarpus_havilandii,Lithocarpus_conocarpus))))))))Subfamily_Castaneoideae)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5630] END;