#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 18:04 GMT

TreeBASE (cc) 1994-2008

Study reference:
Wu X.Y. 2013. The evolutionary pattern and the regulation of stearoyl-CoA desaturase
genes. BioMed Research International, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S14739]

[ The following blocks are input data for analysis step 12511 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep12511;
        DIMENSIONS NTAX=16;
        TAXLABELS
            Caenorhabditis_elegans_FAT5
            Caenorhabditis_elegans_FAT6
            Caenorhabditis_elegans_FAT7
            Drosophila_melanogaster_SCD
            Gorilla_gorilla_SCD1
            Gorilla_gorilla_SCD5
            Homo_sapiens_SCD1
            Homo_sapiens_SCD5
            Macaca_mulatta_SCD1
            Macaca_mulatta_SCD5
            Mus_musculus_SCD1
            Pan_troglodytes_SCD1
            Pan_troglodytes_SCD5
            Rattus_norvegicus_SCD1
            Tupaia_belangeri_SCD1
            Tupaia_belangeri_SCD5
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M18751]

	TITLE SCD_AA;
	LINK TAXA = TaxaForAnalysisStep12511;
	DIMENSIONS NCHAR=389;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                       10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380         ]
[                                        .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         ]
Caenorhabditis_elegans_FAT5     M----------------------TQIKVDAIISKQFLAAD-----------LNEIRQMQEE----SKKQVIKME-IVWKNVALFVALHIGALVGLYQLVFQAKWATVGWVFLLHTLGSMGVTGGAHRLWAHRAYKATLSWRVFLMLINSIAFQNDIIDWARDHRCHHKWTDTDADPHSTNRGMFFAHMGWLLVKKHDQLKIQGGKLDLSDLYEDPVLMFQRKNYLPLVGIFCFALPTFIPVVLWGESAFIAFYTAALFRYCFTLHATWCINSVSHWVGWQPYDHQASSVDNLWTSIAAVGEGGHNYHHTFPQDYRTSEHA-EFLNWTRVLIDFGASIGMVYDRKTTPEEVIQRQCKKFGCETEREKMLHKLG-----------------
Caenorhabditis_elegans_FAT6     M-------------TVKTRSNIAKKIEKDGGPETQYLAVD-----------PNEIIQLQEE----SKKIPYKME-IVWRNVALFAALHFAAAIGLYQLIFEAKWQTVIFTFLLYVFGGFGITAGAHRLWSHKSYKATTPMRIFLMILNNIALQNDVIEWARDHRCHHKWTDTDADPHNTTRGFFFAHMGWLLVRKHPQVKEQGAKLDMSDLLSDPVLVFQRKHYFPLVILCCFILPTIIPVYFWKETAFIAFYTAGTFRYCFTLHATWCINSAAHYFGWKPYDSSITPVENVFTTIAAVGEGGHNFHHTFPQDYRTSEYS-LKYNWTRVLIDTAAALGLVYDRKTACDEIIGRQVSNHGCDIQRGKSIM--------------------
Caenorhabditis_elegans_FAT7     M-------------TVKTRASIAKKIEKD-GLDSQYLFMD-----------PNEVLQVQEE----SKKIPYKME-IVWRNVALFAALHVAAAIGLYELVFHAKWQTAVFSFALYVFSGFGITAGAHRLWSHKSYKATTPMRIFLMLLNNIALQNDIIEWARDHRCHHKWTDTDADPHNTTRGFFFTHMGWLLVRKHPQVKEHGGKLDLSDLFSDPVLVFQRKHYFPLVILFCFILPTIIPVYFWKETAFIAFYVAGTFRYCFTLHATWCINSAAHYFGWKPYDTSVSAVENVFTTVVAVGEGGHNFHHTFPQDYRASEYS-LIYNWTRVLIDTAAVLGLVYDRKTIADEFISRQVANHGSEESRKKSIM--------------------
Drosophila_melanogaster_SCD     MP----PNAQAGAQSISDSLIAAASAAADAGQSPTKLQEDSTGVLFECDV-ETTDGGLVKDITVMKKAEKRRLK-LVWRNIIAFGYLHLAALYGAYLMVTSAKWQTCILAYFLYVISGLGITAGAHRLWAHRSYKAKWPLRVILVIFNTIAFQDAAYHWARDHRVHHKYSETDADPHNATRGFFFSHVGWLLCKKHPEVKAKGKGVDLSDLRADPILMFQKKYYMILMPIACFIIPTVVPMYAWGESFMNAWFVATMFRWCFILNVTWLVNSAAHKFGGRPYDKFINPSENISVAILAFGEGWHNYHHVFPWDYKTAEFGKYSLNFTTAFIDFFAKIGWAYDLKTVSTDIIKKRVKRTGDGTHATWGWGDVDQPKEEIEDAVITHKKSE
Gorilla_gorilla_SCD1            MPAHLLQDDISSSYTTTTTITAPPSRVLQNGGDKLETTPLYLEDDIRPDIKDDIYDPTYKD----KEGPSPKVE-YVWRNIILMSLLHLGALYGIT-LIPTCKFYTWLWGVFYYFISALGITAGAHRLWSHRSYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGSTLDLSDLEAEKLVMFQRRYYKPGLLLMCFILPTLVPWYFWGETFQNSVFVATFLRYAVVLNATWLVNSAAHLFGYRPYDKNISPRENILVSLGAVGEGFHNYHHSFPYDYSASEYR-WHINFTTFFIDCMAALGLAYDRKKVSKAAILARIKRTGDGNYKSG-----------------------
Gorilla_gorilla_SCD5            M--------PGPATDAGKIPFCDAKEEIRAG---L----------------ESSEGGGGPE----RPGARGQRQNIVWRNVVLMSLLHLGAVYSLV-LIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAFQNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLLADPVVRIQRKYYKISVVLMCFMVPTLVPWYIWGESLWNSYFLASILRYTISLNISWLVNSAAHMYGNRPYDKHISPRQNPLVALGAIGEGFHNYHHTFPFDYSASEFG-LNFNPTTWFIDFMCWLGLATDRKRATKPMIEARKARTGDSSA--------------------------
Homo_sapiens_SCD1               MPAHLLQDDISSSYTTTTTITAPPSRVLQNGGDKLETMPLYLEDDIRPDIKDDIYDPTYKD----KEGPSPKVE-YVWRNIILMSLLHLGALYGIT-LIPTCKFYTWLWGVFYYFVSALGITAGAHRLWSHRSYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGSTLDLSDLEAEKLVMFQRRYYKPGLLMMCFILPTLVPWYFWGETFQNSVFVATFLRYAVVLNATWLVNSAAHLFGYRPYDKNISPRENILVSLGAVGEGFHNYHHSFPYDYSASEYR-WHINFTTFFIDCMAALGLAYDRKKVSKAAILARIKRTGDGNYKSG-----------------------
Homo_sapiens_SCD5               M--------PGPATDAGKIPFCDAKEEIRAG---L----------------ESSEGGGGPE----RPGARGQRQNIVWRNVVLMSLLHLGAVYSLV-LIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAFQNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLLADPVVRIQRKYYKISVVLMCFVVPTLVPWYIWGESLWNSYFLASILRYTISLNISWLVNSAAHMYGNRPYDKHISPRQNPLVALGAIGEGFHNYHHTFPFDYSASEFG-LNFNPTTWFIDFMCWLGLATDRKRATKPMIEARKARTGDSSA--------------------------
Macaca_mulatta_SCD1             MPAHLLQEDISSSYTTTTTITAPPSRVLQNGRDKLETTPLYLEEDVRPDIKDDIYDPTYKD----KEGPSPKVE-YVWRNIILMSLLHLGALYGIT-LIPTCKLYTCLWGLFYYVVSALGITAGAHRLWSHRSYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGATLDLSDLEAEKLVMFQRRYYKPGLLLMCFILPTLVPWCFWGETFQHSVFVATFLRYAIVLNVTWLVNSAAHLFGYRPYDKNISPRENILVSLGAVGEGFHNYHHSFPYDYSASEYR-WHINFTTFFIDCMA------------------------------------------------------
Macaca_mulatta_SCD5             M--------PGPATDAGKIPFCDAKEEIRAG---L----------------ESSEGGGGPE----RPGARGQRQNIVWRNVVLMSLLHLGAVYSLV-LIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYKAKLPLRIFLAVANSMAFQNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHPDVIEKGRKLDVTDLLADPVVRIQRKYYKISVVLMCFAVPTLVPWYIWGESLWNSYFLASILRYTISLNVAWLVNSAAHMYGNRPYDKHISPRQNPLVALGAIGEGFHNYHHTFPFDYSASEFG-LNFNPTTWFIDLMCWLGLATDRKRATKPMIEARKARTGDSSA--------------------------
Mus_musculus_SCD1               MPAHMLQE-ISSSYTTTTTITAPPSG---NEREKVKTVPLHLEEDIRPEMKEDIHDPTYQD----EEGPPPKLE-YVWRNIILMVLLHLGGLYGII-LVPSCKLYTCLFGIFYYMTSALGITAGAHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYYKPGLLLMCFILPTLVPWYCWGETFVNSLFVSTFLRYTLVLNATWLVNSAAHLYGYRPYDKNIQSRENILVSLGAVGEGFHNYHHTFPFDYSASEYR-WHINFTTFFIDCMAALGLAYDRKKVSKATVLARIKRTGDGSHKSS-----------------------
Pan_troglodytes_SCD1            MPAHLLQDDISSSYTTTTTITAPPSRVLQNGGDKLETTPLYLEDNIRPDIKDDIYDPTYKD----KEGPSPKVE-YVWRNIILMSLLHLGALYGIT-LIPTCKFYTWLWGVFYYFVSALGITAGAHRLWSHRSYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGSTLDLSDLEAEKLVMFQRRYYKTGLLLMCFILPTLVPWYFWGETFQNSVFVATFLRYAVVLNATWLVNSAAHLFGYRPYDKNISPRENILVSLGAVGEGFHNYHHSFPYDYSASEYR-WHINFTTFFIDCMAALGLAYDRKKVSKAAILARIKRTGDGNYKSG-----------------------
Pan_troglodytes_SCD5            M--------PGSATDAGKIPFCDAKEEIRAG---L----------------ESSEGGGGPE----RPGARGQRQNIVWRNVVLMSLLHLGAVYSLV-LIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAFQNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLLADPVVRIQRKYYKISVVLMCFVVPTLVPWYIWGESLWNSYFLASILRYTISLNISWLVNSAAHMYGNRPYDKHISPRQNPLVALGAIGEGFHNYHHTFPFDYSASEFG-LNFNPTTWFIDFMCWLGLATDRKRATKPMIEARKARTGDSSA--------------------------
Rattus_norvegicus_SCD1          MPAHMLQEQISSSYTTTTTITEPPSGNLQNGREKMKKVPLYLEEDIRPEMREDIHDPSYQD----EEGPPPKLE-YVWRNIILMALLHVGALYGIT-LIPSSKVYTLLWGIFYYLISALGITAGAHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYYKPGLLLMCFILPTLVPWYCWGETFLHSLFVSTFLRYTLVLNATWLVNSAAHLYGYRPYDKNIQSRENILVSLGAVGEGFHNYHHAFPYDYSASEYR-WHINFTTFFIDCMAALGLAYDRKKVSKAAVLARIKRTGDGSHKSS-----------------------
Tupaia_belangeri_SCD1           MPAHMLQDEISSSYTTTTTITAPPSRVLQNGGGKLEKTSLCFDEDIRPEISDDIHDPSYQD----KEGPAPKLE-YVWRNIILMSLLHLGALYGIV-LFPTSKFYTWLWVLFYYLVSALGITAGAHRLWSHRTYKARLPLRLFLIIANTMAFQNDVYEWARDHRVHHKFSETHADPHNARRGFFFSHVGWLLVRKHPAVKEKGALLDLSDLRAEKLVMFQRRYYVPGVLLMCFILPTLVPWCLWGETFMHSLYVATLLRYATVLNATWLVNSAAHLYGYRPYDKTINPRENILVSLGAVGEGFHNYHHTFPYDYSASEYR-WHINLTTFFIDCMAALGLAYDRKKVSKAAVLARIKRTGDGTYKSG-----------------------
Tupaia_belangeri_SCD5           M--------PGLAADAGKVPFCDAKEEIRAG---L----------------EGSEGGGGPE----RPDARGRRQNIVWRNVVLMSLLHLGAVYSLV-LIPKAKPLTLLWAYFCFLLTALGVTAGAHRLWSHRSYKAKLPLRIFLAAANSMAFQNDIFEWCRDHRVHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDFTDLLADPVVRFQRKYYKITVVLMCFAVPTLVPWYIWGESLWNSYFLASILRYTISLNVTWLVNSAAHMYGNRPYNKHISPRQNPLVTLGAIGEGFHNYHHTFPFDYSASEFG-LNFNPTTWFIDFMCWLGLATDRKRAPKPMIEAQKARTGDGSA--------------------------
;
END;

[ The following blocks are output data for analysis step 12511 ]
BEGIN TREES;
      TITLE SCD_AA;
      LINK TAXA = TaxaForAnalysisStep12511;
      TREE SCD = [&R] (((((((Pan_troglodytes_SCD1:0.00562306,Homo_sapiens_SCD1:0.005519)0.51:1.9426E-4,Gorilla_gorilla_SCD1:0.00259126)1.00:0.01818817,Macaca_mulatta_SCD1:0.02182)1.00:0.0391191,Tupaia_belangeri_SCD1:0.06928394)0.76:0.00925803,(Mus_musculus_SCD1:0.03302462,Rattus_norvegicus_SCD1:0.03176411)1.00:0.04522298)1.00:0.13309019,(Tupaia_belangeri_SCD5:0.03248386,(Macaca_mulatta_SCD5:0.00737393,(Pan_troglodytes_SCD5:0.00142923,(Gorilla_gorilla_SCD5:0.00164141,Homo_sapiens_SCD5:0.00138889)0.57:0.00160108)0.95:0.01005031)1.00:0.02281917)1.00:0.17970044)0.99:0.04266146,Drosophila_melanogaster_SCD:0.24257293,(Caenorhabditis_elegans_FAT5:0.19563748,(Caenorhabditis_elegans_FAT6:0.06820054,Caenorhabditis_elegans_FAT7:0.07085272)1.00:0.08992938)1.00:0.1272336);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr66734]


END;