#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on November 11, 2026; 5:19 GMT

TreeBASE (cc) 1994-2008

Study reference:
Galian J.A., Rosato M., & Rossello J.A. 2013. Partial Sequence Homogenization in
the 5S Multigene Families May Generate Sequence Chimeras and Spurious Results in
Phylogenetic Reconstructions. Systematic Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S14995]

[ The following blocks are input data for analysis step 12571 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep12571;
        DIMENSIONS NTAX=17;
        TAXLABELS
            Medicago_sp._R1
            Medicago_sp._R13
            Medicago_sp._R14
            Medicago_sp._R15
            Medicago_sp._R16
            Medicago_sp._R17
            Medicago_sp._R18
            Medicago_sp._R19
            Medicago_sp._R20
            Medicago_sp._R21
            Medicago_sp._R22
            Medicago_sp._R23
            Medicago_sp._R24
            Medicago_sp._R25
            Medicago_sp._R26
            Medicago_sp._R3
            Medicago_sp._R4
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19590]

	TITLE Medicago_chimeric_sequences;
	LINK TAXA = TaxaForAnalysisStep12571;
	DIMENSIONS NCHAR=119;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -;

MATRIX
[                            10        20        30        40        50        60        70        80        90        100       110         ]
[                             .         .         .         .         .         .         .         .         .         .         .         ]
Medicago_sp._R1      AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCTC
Medicago_sp._R13     AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCGGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCTC
Medicago_sp._R14     AGGTGCGACCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCTC
Medicago_sp._R15     AGGTGCGATCATGCCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCTC
Medicago_sp._R16     AGGTGCGATCATACCAGCACTAATGCAGCGGATCCCATCAGAACTCCACAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCTC
Medicago_sp._R17     AGGTGCGATCATACCAGCACTAATGCATCGGATCCCATCAGAACTCCGCAGTTAAGCGTGTTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTGGGAAGTCGTTGTGTTGCACCTC
Medicago_sp._R18     AGTTGCGATCATGCCAGCACTAATGCACTGGATCCCATCAGAACTTCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCTC
Medicago_sp._R19     AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCACGCGTGCTTGGGCGAGAGTTGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCTC
Medicago_sp._R20     AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCACGCGTGCTTGGGCGAGAGTTGTACTGGG-TGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCTC
Medicago_sp._R21     AGGTGCGATCATACCAGCATTAATGCACCGGATCCCATCAAAACTCCGCAGTTAAGCGTGCTTGGGCGGGAGTTGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCTC
Medicago_sp._R22     AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTTCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGATGACCTCCTGGAATGTCCTTGTGTTGCACCTC
Medicago_sp._R23     AGGTCCTATCATACCATCACTAATGCACCGGATCCCATCAGAACTTCGCAGTTAAGCTTGCTTGGGCTGGAGTAGTACTGGGATGGGTGACCTCCTGGGAAGTCCTGGTGTTGCACCTC
Medicago_sp._R24     AGGTGCGATCATACCAGCACAAATGCTCCGGATCCCATCAGAACTCTGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTCCGAAGTCCTTGTGTTGCACCTC
Medicago_sp._R25     AGGTGCGATCATACCAGCACTAATGTATCGAATCCCATCAGAACTTCACAGTTAAGTGTGCTTGCACGAGAGTAGTACTGGGATGGGTGACCTCCTGGGAAGTCCTAGTGTTGCACCTC
Medicago_sp._R26     AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCG-------------GTAGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGCTGCACCTC
Medicago_sp._R3      AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGTGTAGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCTC
Medicago_sp._R4      AGGTGCGATCATACCAGCGCTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCTC
;
END;

[ The following blocks are output data for analysis step 12571 ]
BEGIN TREES;
      TITLE Medicago_chimeric_sequences;
      LINK TAXA = TaxaForAnalysisStep12571;
      TREE Imported_tree_0 = [&R] (((((((((Medicago_sp._R19,Medicago_sp._R20)0.9000,Medicago_sp._R21)0.6800,Medicago_sp._R26)0.1000,(Medicago_sp._R24,Medicago_sp._R4)0.1300)0.0200,(Medicago_sp._R14,Medicago_sp._R1)0.1100)0.0200,(Medicago_sp._R3,Medicago_sp._R13)0.0600)0.0100,(Medicago_sp._R17,Medicago_sp._R16)0.2100)0.2500,(Medicago_sp._R18,Medicago_sp._R15)0.4200)0.3200,(Medicago_sp._R22,(Medicago_sp._R23,Medicago_sp._R25)0.3500)0.3200);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr68678]


END;