#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 10, 2026; 4:57 GMT TreeBASE (cc) 1994-2008 Study reference: Galian J.A., Rosato M., & Rossello J.A. 2013. Partial Sequence Homogenization in the 5S Multigene Families May Generate Sequence Chimeras and Spurious Results in Phylogenetic Reconstructions. Systematic Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S14995] [ The following blocks are input data for analysis step 12572 ] BEGIN TAXA; TITLE TaxaForAnalysisStep12572; DIMENSIONS NTAX=26; TAXLABELS Medicago_sp._R1 Medicago_sp._R10 Medicago_sp._R11 Medicago_sp._R12 Medicago_sp._R13 Medicago_sp._R14 Medicago_sp._R15 Medicago_sp._R16 Medicago_sp._R17 Medicago_sp._R18 Medicago_sp._R19 Medicago_sp._R2 Medicago_sp._R20 Medicago_sp._R21 Medicago_sp._R22 Medicago_sp._R23 Medicago_sp._R24 Medicago_sp._R25 Medicago_sp._R26 Medicago_sp._R3 Medicago_sp._R4 Medicago_sp._R5 Medicago_sp._R6 Medicago_sp._R7 Medicago_sp._R8 Medicago_sp._R9 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19589] TITLE Medicago_combined_sequences; LINK TAXA = TaxaForAnalysisStep12572; DIMENSIONS NCHAR=187; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 ] [ . . . . . . . . . . . . . . . . . . ] Medicago_sp._R1 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC Medicago_sp._R10 AGGTGCGATCATACCAGCATTAATGCACCGGATCCCATCAAAACTCCGCAGTTAAGCGTGCTTGGGCGGGAGTTGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCGTTGTGTTGCACCTC Medicago_sp._R11 AGGTGCGATCATACCAGCACTAATGTATCGAATCCCATCAGAACTTCACAGTTAAGTGTGCTTGCACGAGAGTAGTACTAGGATGGATGACCTACTG--------------------------------------------------------------------GGAAGTCCTGGTGTTGCACCTC Medicago_sp._R12 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCACGCGTGCTTGGGCGAGAGTTGTACTGGGATGGGTGACCTCCTGTACTGGGATGGGTGACCTCCAGTGTACTGGGATGGTGACCTCCATGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCTC Medicago_sp._R13 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCGGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC Medicago_sp._R14 AGGTGCGACCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC Medicago_sp._R15 AGGTGCGATCATGCCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC Medicago_sp._R16 AGGTGCGATCATACCAGCACTAATGCAGCGGATCCCATCAGAACTCCACAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC Medicago_sp._R17 AGGTGCGATCATACCAGCACTAATGCATCGGATCCCATCAGAACTCCGCAGTTAAGCGTGTTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCGTTGTGTTGCACCTC Medicago_sp._R18 AGTTGCGATCATGCCAGCACTAATGCACTGGATCCCATCAGAACTTCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC Medicago_sp._R19 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCACGCGTGCTTGGGCGAGAGTTGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC Medicago_sp._R2 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC Medicago_sp._R20 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCACGCGTGCTTGGGCGAGAGTTGTACTGGG-TGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC Medicago_sp._R21 AGGTGCGATCATACCAGCATTAATGCACCGGATCCCATCAAAACTCCGCAGTTAAGCGTGCTTGGGCGGGAGTTGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC Medicago_sp._R22 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTTCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGATGACCTCCTG--------------------------------------------------------------------GAATGTCCTTGTGTTGCACCTC Medicago_sp._R23 AGGTCCTATCATACCATCACTAATGCACCGGATCCCATCAGAACTTCGCAGTTAAGCTTGCTTGGGCTGGAGTAGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTGGTGTTGCACCTC Medicago_sp._R24 AGGTGCGATCATACCAGCACAAATGCTCCGGATCCCATCAGAACTCTGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTC--------------------------------------------------------------------CGAAGTCCTTGTGTTGCACCTC Medicago_sp._R25 AGGTGCGATCATACCAGCACTAATGTATCGAATCCCATCAGAACTTCACAGTTAAGTGTGCTTGCACGAGAGTAGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTAGTGTTGCACCTC Medicago_sp._R26 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCG-------------GTAGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGCTGCACCTC Medicago_sp._R3 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGTGTAGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC Medicago_sp._R4 AGGTGCGATCATACCAGCGCTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC Medicago_sp._R5 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCCCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC Medicago_sp._R6 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT-AAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCCCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC Medicago_sp._R7 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGTAGTCACGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGCTGCACCTC Medicago_sp._R8 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCGGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTG--------------------------------------------------------------------GAATGTCCTTGTGTTGCACCTC Medicago_sp._R9 AGGTGCGATCATACCAGCACAAATGCTCCGGATCCCATCAGAACTCTGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--------------------------------------------------------------------GGAAGTCCTTGTGTTGCACCTC ; END; [ The following blocks are output data for analysis step 12572 ] BEGIN TREES; TITLE Medicago_combined_sequences; LINK TAXA = TaxaForAnalysisStep12572; TREE Imported_tree_0 = [&R] (((((((((((Medicago_sp._R19,Medicago_sp._R20)0.3200,Medicago_sp._R12)0.7200,(Medicago_sp._R21,Medicago_sp._R10)0.8000)0.4400,((Medicago_sp._R24,Medicago_sp._R9)0.9800,(Medicago_sp._R26,Medicago_sp._R7)0.4300)0.2800)0.1100,(Medicago_sp._R1,Medicago_sp._R3)0.0900)0.0200,(Medicago_sp._R14,Medicago_sp._R4)0.0500)0.0100,(Medicago_sp._R18,Medicago_sp._R15)0.4300)0.0600,(Medicago_sp._R13,((Medicago_sp._R22,Medicago_sp._R8)0.4600,(Medicago_sp._R2,(Medicago_sp._R6,Medicago_sp._R5)0.6600)0.5300)0.1900)0.0800)0.1500,(Medicago_sp._R16,Medicago_sp._R17)0.2000)0.4000,Medicago_sp._R23)0.9800,(Medicago_sp._R25,Medicago_sp._R11)0.9800); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr68677] END;