#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 12, 2026; 7:32 GMT TreeBASE (cc) 1994-2008 Study reference: Flores-renteria L., Lau M.K., Lamit L.J., & Gehring C.A. 2013. An elusive ectomycorrhizal fungus reveals itself: A new species of Geopora (Pyronemataceae) associated with Pinus edulis. Mycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15011] [ The following blocks are input data for analysis step 12584 ] BEGIN TAXA; TITLE TaxaForAnalysisStep12584; DIMENSIONS NTAX=25; TAXLABELS Geopora_arenicola_DQ220336 Geopora_arenicola_DQ220337 Geopora_cercocarpi_HQ283091 Geopora_cercocarpi_HQ283098 Geopora_cf_cervina_DQ220344 Geopora_clausa_DQ220339 Geopora_cooperi_DQ220340 Geopora_cooperi_DQ220341 Geopora_cooperi_f._gilkeyae_DQ220342 Geopora_pellita_DQ220343 Geopora_pinyonensis_3b Geopora_pinyonensis_5b Geopora_sp_DQ220338 Geopora_sp_DQ220345 Geopora_sp_DQ223973 Geopora_sp._GeoSun3_LROR Geopora_sp._GeoSun5_LROR Geopora_typeC_HQ630381 Geopora_typeE_HQ630382 Geopora_typeJ_HQ630383 Geopora_typeK_HQ630384 Geopora_typeZ_HQ630385 Pyronema_domesticum_NG_027655 Pyronemataceae_sp_GQ281477 Wilcoxina_mikolae_DQ220468 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19649] TITLE Geopora_nuLSU_matrix; LINK TAXA = TaxaForAnalysisStep12584; DIMENSIONS NCHAR=801; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Geopora_arenicola_DQ220336 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-CGTCT-CCACGAGAT--GT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-TGAACCACATTGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTCGATGTCGGGTCAAACC-GTGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTTCGGTCCGGTG--CCCTCGCCATTGGTTGGGCCAGCATCGGTTCCGGCGGTGGGATAAAAGGAGGTGGAATGTGGCTCCCTTTGGGG-AGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATTAAAGTGAACGGAGGTGTGA-ACCCC---TTGCGG-----GGTGCAACATCGACCGGTCCTGATGTCTTCGGAGGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_arenicola_DQ220337 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-CGTCT-CCACGAGAT--GT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-TGAACCACATTGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTCGATGTCGGGTCAAACC-GTGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTTCGGTCCGGTG--CCCTCGCCATTGGTTGGGCCAGCATCGGTTCCGGCGGTGGGATAAAAGGAGGTGGAATGTGGCTCCCTTTGGGG-AGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATTAAAGTGAACGGAGGTGTGA-ACCCC---TTGCGG-----GGTGCAACATCGACCGGTCCTGATGTCTTCGGAGGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_cercocarpi_HQ283091 ----------TAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGTCT-ACCAAACGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-TGAACCACACCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTTGGTGTCGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-CTTGGTGATCAGCCGGGCTCCGGTCCGGTG--CCCTCGCCATTGATTGGGCCAGCATCGGTTCCGACGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCTTCGGGG-AGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Geopora_cercocarpi_HQ283098 ---------------------------------GCTCAAATTTGAAATCGG-TGTCT-ACCAAACGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-TGAACCACACCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTTGGTGTCGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-CTTGGTGATCAGCCGGGCTCCGGTCCGGTG--CCCTCGCCATTGATTGGGCCAGCATCGGTTCCGACGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCTTCGGGG-AGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Geopora_cf_cervina_DQ220344 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGTCT-ACCTTAGGC--GT-CGAGTT-GTAATTTGGAGGGACAACTTCGGAC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTCGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGTGATCGACCGGGCTCCGGTCCGGTG--CCCTCGCCATTGATTGGGCCAGCATCGGTTCCGACGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCTTCGGGG-AGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGCGGAAAACCCTTGCGCGTAATTAAAGTGAATGGAGGTGTGA-ACTCCGGATTGCCG-----GGTGCAACATCGACCGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_clausa_DQ220339 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGTC---CATCAAAC--GC-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGTGATCAGCCGGGCTTCGGTCCGGTG--CCCTCGCCATTGGTTGGGCCAGCATCGGTTCCAGCGGTGGGACAAAAGGAGGAGGAATGTGGCTCCCTTCGGGG-AGTGTTATAGCCACCTTCACAATGCCACCAGTTGGGATCGAGGACCGCGCTTCGGCTAGGATGCTGGTGCAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGCGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGTGA-ACCCC---TTACGG-----GGCGCAACATCGACCGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_cooperi_DQ220340 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGTCC-ATAAAGTGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGG-CGAACCACACCGTAAGTTTTTTGGAACAGGACATCATAGAGGGTGAGAATCCCGTGTCTTGGTGTAGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGAGATCAGCCGGGCTTCTGTTCGGTG--CCCTCTCCATTGATTGGGCCAGCATCGGTTCTGACGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCCTTGGGG-AGTGTTATAGCCACCTTCACAATGCTACCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGTGA-ACCCT---TTACGG-----GGTGCAACATCGACCGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTATCGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_cooperi_DQ220341 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGTCC-ATAAAGTAC--AT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-CGAACCACACCGTAAGTTTTTTGGAACAGGACATCATAGAGGGTGAGAATCCCGTGTCTTGGTGTAGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGAGATCAGCCGGGCTTCGGTTCGGTG--CCCTCTTCATTGATTGGGCCAGCATCGGTTCCGGCGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCCTCGGGG-AGTGTTATAGCCACCTTCACAATGCTACCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGTGA-ACCCT---TTGCCG-----GGTGCAACATCGACTGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_cooperi_f._gilkeyae_DQ220342 -----CTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGTCC-ATAAAGTGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGG-CGAACCACACCGTAAGTTTTTTGGAACAGGACATCATAGAGGGTGAGAATCCCGTGTCTTGGTGTAGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGAGATCAGCCGGGCTTCTGTTCGGTG--CCCTCTCCATTGATTGGGCCAGCATCGGTTCTGACGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCCTCGGGG-AGTGTTATAGCCACCTTCACAATGCTACCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGTGA-ACCCT---TTACGG-----GGTGCAACATCGACCGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_pellita_DQ220343 ATTGCCCCAGTAACTGCGAGTGAAGCGGCAAGAGCTCAAAGTTGAAATCTG-TGTCCCTTGCGGGGC--AC-CGAGTT-GTAATTTGCAGGGATGGCTTCGGGGTGGGACCGCGTCGCAAGTTCCTTGGAACAGGACGTCATGGAGGGTGAGAATCCCGTGTC--GATGGGGGTCCCAACCCATGTGAAGTGTTTCCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTGAGAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCAAACATTTGGTGATCAGCTGGACTTCTGTCCGGTG--CCCTCGCCACTGATTGGGCCAGCATCGGTTCCGACGGTGGGATAAAAGAGGGAGGAACGTGGCTGCCTCCGGGG-AGCGTTATAGCCTCCTTCACAATGCCATCGGTCGGGACCGAGGACCGCGCTTCGGCCAGGATGCTGGTGTAATGGGCTCAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCCATGCGAGTGTTTGGGTGGAA?ACCCTCACGCGCAATGAAAGTGAACTGAGGTGTGA-ACCCT---TTGCCG-----GGTGCAACATCGACCGGTCCCAAAGATTTCGGAAGGATCCGAGTAAGAGCATGGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_pinyonensis_3b ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGCGT-ACCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTCCGGTCCGGTG--CCCTCGCCATTGATCGGGCCAGCATCGGTTCCGACGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCTCCGGGG-AGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGTGA-ACCCT---TTGCCG-----GGCGCAACATCGACCGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_pinyonensis_5b ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGCGT-ACCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTCCGGTCCGGTG--CCCTCGCCATTGATCGGGCCAGCATCGGTTCCGACGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCTCCGGGG-AGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGTGA-ACCCT---TTGCCG-----GGCGCAACATCGACCGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTTTG Geopora_sp_DQ220338 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGA-CGTCT-CCACGAGGT--GT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTTGATGTCGGGTCAAACCCGTGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTTCGGTCCGGTG--CCCTCCCCATTGGTTGGGCCAGCATCGGTTCCGGCGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCTTTGGGG-AGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATTAAAGTGAACGGAGGTGTGA-ACCCC---TTGCGG-----GGTGCAACATCGACCGGTCCTGATGTCTTCGGAGGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_sp_DQ220345 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGCCT-ACCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-TGAACCACACCGCAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTTGGTGTCGGGTCAACCC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGTGATCAGCCGGGCTCCGGTCCGGTG--CCCTCACCATTGATTGGGCCAGCATCGGTTCCGACGGCGGGATAAAAGGAGGCGGAATGTAGCTCCCTTCGGGG-AGTGTTATAGCCACCTTCACAATGCCGCCAGTTGGGACCGAGGACCGCGTTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGTGA-ACCCT---TTGCGG-----GGTGCAACATCGACCGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_sp_DQ223973 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGTCT-ACCTAAGGC--GT-CGAGTT-GTAATTTGGAGGGACAACTTCGGAC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTCGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGTGATCGGCCGGGCTCCGGTCCGGTC--CCCTCGCCATTGATTGGGCCAGCATCGGTTCCGACGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCTTTGGGG-AGTGTTATAGCCACCTTCACAATGCCGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGCGGAAAACCCTTGCGCGTAATTAAAGTGAATGGAGGTGTGA-ACTCCGGATTGCCG----GGGTGCAACATCGACCGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_sp._GeoSun3_LROR ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGCGT-ACCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTCCGGTCCGGTG--CCCTCGCCATTGATCGGGCCAGCATCGGTTCCGACGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCTCCGGGG-AGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGTGA-ACCCT---TTGCCG-----GGCGCAACATCGACCGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_sp._GeoSun5_LROR ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGCGT-ACCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTCCGGTCCGGTG--CCCTCGCCATTGATCGGGCCAGCATCGGTTCCGACGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCTCCGGGG-AGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGTGA-ACCCT---TTGCCG-----GGCGCAACATCGACCGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTTTG Geopora_typeC_HQ630381 ----------TAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATC?GGTGCCTACCCAATCGCGCAT-CGAG?TTGTAATTTGGAGGGACAACTTCGGGC-CGAACCACACCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTCGGTGTCGGGTCGAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGACC-GTTGGTGATCAGCCGGGCTGCGGCCCGGTG--CCCTCACCATCGATTGGGCCAGCATCGGTTCCGACGGCGGGATAAAAGGAGGAGGAATGTGGCTCCCTTCGGGG-AGTGTTATAGCCACCTCCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAAAGGAGGTGTGA-ACCCT---TCGCGG-----GGTGCAACATCGACCGGTCCCGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAA?GATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_typeE_HQ630382 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGCG?TACCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTCGGG?CTGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTCCGGTCCGGTG--CCCTCGCCATTGATCGGGCCAGCATCGGTTCCGACGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCTCCGGGG-AGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGTGA-ACCCT---TTGCGG-----GGCGCAACATCGACCGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_typeJ_HQ630383 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGCCC-ATCTATTGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTCGGG?CTGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATGGAGGGTGAGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGTGTTCAGCCGGACTCCGTTCCGGTGATCCCTCGCCATTGATTGGGCCAGCATCGGTTCCGACGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCTTCGGGGGAGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGTGA-ACCCT---TTACTGTACGGGGTGCAACATCGACCGGTCCTGATGTCTTCGGATGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_typeK_HQ630384 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGATCTATCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGTGATCAGCCGGGCTCCGGTCCGGTG--CCCTCACCATTGATTGGGCCAGCATCGGTTCCGACGGCGGGATAAAAGGAGGAGGAATGTGACTCCCTTTGGGG-AGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAACGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGTGA-ACCCT---TCGCGG-----GGTGCAACATCGACCGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Geopora_typeZ_HQ630385 ----------------------------------------------------------------------T-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTCCGGTCCGGTG--CCCTCGCCATTGATTGGGCCAGCATCGGTTCCGACGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCTCCGGGG-AGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGTGA-ACCCT---TTGCGG-----GGCGCAACATCGACCGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Pyronema_domesticum_NG_027655 --TGCCTCAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCGTCT-----TCGGC--GTCCGAGTT-GTAATTTGGAGAGGCATCTTCGGATATGGCGC-CGTCCTAAGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCCTGGTCGGCTGTCCATATCCATGTGAAGTGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACACCACTCGATC-TTTGGTGATCAGCCGGGCTTCTGTCTGGTG--CACTTGCCATTGATTGGGCCAGCATCGGTTCTGACGGTGGGATAAAAGGCAGAGGAATGTGGCTCTCTTCGGGG-AGTGTTATAGCCTCTGTCATAATGCCGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGCATAAAGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGGGA-ACTCT---TCGGAG-------TGCACCATCGACCGATCCTGATGTTTTCGGAAGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Pyronemataceae_sp_GQ281477 ---------------GCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGG-TGTCT-ACCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTCGGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTCCGGTCCGGTG--CCCTCGCCATTGATTGGGCCAGCATCGGTTCCGACGGTGGGATAAAAGGAGGAGGAATGTGGCTCCCTTCGGGG-AGTGTTATAGCCACCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGTGA-ACCCT---TCGCGG-----GGCGCAACATCGACCGGTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG Wilcoxina_mikolae_DQ220468 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCGTCT-----TTGGC--GTCCGAATT-GTAATTTGGAGAGGCATCTTCGGTGATGGCGC-TGTCCTAAGTTCCTTGGAACAGGATGACATAGAGGGTGAGATCCCCGTGCCTGGGTGGCTGTCCATCTCCATGTGAAGTGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGATT-TGTGGTGATCAGCTGTGCTTCTGTACAGTG--CACTTGCCACAGATTGGGCCAGCATCGGTTCTGACGGTGGGATAAAAGGGTGAGGAATGTGGCTTCCTTCGGGG-AGTGTTATAGCTTCGCTCACAATGCCACCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGTGAACGGAGGTGGGA-ACCCG---CAAGGG-------TGCACCATCGACCGATCCTGATGTCTTCGGAAGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCTG ; END; [ The following blocks are output data for analysis step 12584 ] BEGIN TREES; TITLE Figure_II._LSU; LINK TAXA = TaxaForAnalysisStep12584; TREE Fig._2 = [&R] (Pyronema_domesticum_NG_027655:0.03790606206061639,Wilcoxina_mikolae_DQ220468:0.05983110730777258,((((((((Geopora_pinyonensis_3b:0.001049288965033044,Geopora_sp._GeoSun3_LROR:0.001100648771058702,Geopora_pinyonensis_5b:0.001104171952254287,Geopora_sp._GeoSun5_LROR:0.00267836824401948):0.002769104495182418,Geopora_typeE_HQ630382:0.001153097239648234):0.006292099786487888,Geopora_typeZ_HQ630385:0.003175762882636071):0.003970581387315333,Pyronemataceae_sp_GQ281477:0.00476365295478595):0.004384771585412448,Geopora_typeK_HQ630384:0.01638273242807722,((Geopora_typeC_HQ630381:0.02576462487406244,Geopora_sp_DQ220345:0.01186974338385234):0.005732117024241277,(Geopora_cercocarpi_HQ283091:0.001511217554110991,Geopora_cercocarpi_HQ283098:0.001397428368243649):0.005736489278194677,((Geopora_cooperi_f._gilkeyae_DQ220342:0.001206585722943815,Geopora_cooperi_DQ220340:0.002687093033208549):0.007900379551915162,Geopora_cooperi_DQ220341:0.009805905613668533):0.03113713701716152):0.004587103768920879):0.003400342586914687,Geopora_typeJ_HQ630383:0.02047923937662802):0.007576847437893047,((((Geopora_arenicola_DQ220336:0.001065375793122362,Geopora_arenicola_DQ220337:0.001081451805067146):0.007128317589966384,Geopora_sp_DQ220338:0.004853172423975142):0.01718628837999428,Geopora_clausa_DQ220339:0.02754441780450111):0.008470516389134729,(Geopora_sp_DQ223973:0.005809071120356878,Geopora_cf_cervina_DQ220344:0.004315594296431717):0.01389681604035361):0.006177851718650462):0.02484406516532232,Geopora_pellita_DQ220343:0.1499587976348784):0.07750061659709263); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr68714] END;