#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 23:48 GMT TreeBASE (cc) 1994-2008 Study reference: Rodriguez-prieto A., Igea J., & Castresana J. 2014. Development of rapidly evolving intron markers to estimate multilocus species trees of rodents. PLOS ONE, 9: e96032. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15064] [ The following blocks are input data for analysis step 12649 ] BEGIN TAXA; TITLE TaxaForAnalysisStep12649; DIMENSIONS NTAX=15; TAXLABELS Apodemus_flavicollis Atherurus_macrourus Cavia_porcellus Cynomys_ludovicianus Glis_glis Homo_sapiens Hydrochoerus_hydrochaeris Microtus_duodecimcostatus Microtus_lusitanicus Mus_musculus Myocastor_coypus Octodontomys_gliroides Proechimys_guairae Rattus_norvegicus Sciurus_vulgaris ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19789] TITLE 'Mammal Abcb9-intron-2'; LINK TAXA = TaxaForAnalysisStep12649; DIMENSIONS NCHAR=280; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Apodemus_flavicollis GTAGCCACCCAACGGCAGGAGGGTGCAGGAGCAGCCCAGCACCGCAGCAAC--CCCACACTGACTCGGAA-------CCCTTTGCTTGGGCCACAGCCTGGAGCCATGCCCTCTTGTCTCTGAAAATGGCTCCAGTCCCTGGTTGGTTGCCAGTGTTGAGTCCTTACCCTCTTACTGGGGGAGTGAGGAGGTCCCCTACAGAGGG--AGAAGGGGCTGCTGGTGGGCGGCGCTGCCTGCCGGAAGGATGCCG-GCTATACCGTCTCTCATCTGCAATCAG Atherurus_macrourus GTAGCCACTCCGCGGGGGCCCTGTCCCTCAGCCCGTCACTGCAGTGACCAGCTCCCAAGCCAGCTAGGAGCCCATGTCTCTGAGGAGGGCCGTACCCTAGGAGACATACCCGCTGCTCTCTGAAAGTGGCGTTGGTCCCTGGCTGGTTGACAGCTTTGGGTCCCTTGTCCCTGGCTGGGGAATGCGGGGGACCCCCTGAAGAGTGGCGGAGGGGCGGCCGGGTGGTGGCTGTCGCTTGTCGGAAGGACGTCGTGCTATAACATCTTTTATCTGCAATTAG Cavia_porcellus GTAGCCGCCC-GCGGGGGCCCTGTCCCTCGGCCCGTCACCTCAGTGACCGGT-CCTGAGCCAGCCTAGCACCTCATCCCTGCAGCAGGCAGGCCAC-------------------GTCCTAAATCGAGGCTTCAGCCCCTGGCTGGTTGGCAGCTCTGGGTCCCCTGTCC--------------GGAGGGGCCCCTGGCAGTGGGAGGGGAGGGCGGGCGGGTGGTGGCTGCCGCTCCTCGGA--GGCCGCGCGCTATAACATCTGTTATCTGCAATTAG Cynomys_ludovicianus GTAGCCACTCGGCG--GGACCTGTCCGACAGCC---------CGTGACCAGCTCCCAAACTGGCTTAGAAACCTCGTCCCTGTGATCAGACCACATCCTAGTGCTGCACCCTCTTGTC-------------TTGGTCCCTTGCTGCTTGGCAGAGCTGGGCCCCTTGCCTCCCACAGGGAAAGAGGGACACCCCCCTGGACAGTGGCGGAGGGGCGGCCGGGTGGTGGTTGTCGCA-GTCGGAAGGACGCGGTGCTATAACATCTCTTATCTGCAATTAG Glis_glis ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Homo_sapiens GTAGCTGGCTCAAGGTGGGCCTGTCCCTCAGCTGGTCACCCTGGGAACCGGCTTCCACACTGTCTTAGA-----------------------GCACCCTAGAACCACACCCTCTGGTCCCTGAAAAGGGCTTCAGTCCCTGGCTGTTTGGCACATTTGGGTCTCTTGTCCCCCACTGGGAATGAGGGGGACCCCCCTGGAGTGGGGCGGAGGGGGCAGCCGGGTGTGGTCACTGGT--CTGGAAGGACATCGTGCTATAATATCTCTTATCTGCAATTAG Hydrochoerus_hydrochaeris GTAGCGGCCCTGCGGGGGCCCTGTCCCTCAGCCCGTCACCCCAGTGACCGGTCCCCGAGCCAGCCTAGTGCCTCGTCCCTGCAGCAGGCAGGCCAC-------------------GTCCTAGATCGAGCCTTCAGCCCCCAGCTGGCTGTCAGCTCCGGGTCCCCTGTCCCTGGCTGCAGACCGAGAGGAGCCCCCGGCAGC-----GGGAGGGCGGCCGGGTGGTGGCTGCCGCTCCCCGGA--GGCCGC-CGCTATAACGTCTCTTATCTGCAATTAG Microtus_duodecimcostatus GTAGCCACCCAACGGCAGCAGGGTGCAGGAGCAGCTCAGCACCATGGCTGCGTCCCAGAGTAGCTTTGAA-------CCCTTTGGTTGGGCCACACCTAAAAGCCACACTCTCTTGTCTCTGAAGATGGCACCAGTCCCTGGCTGGTTGACAGTGTTGAGTCCCTCACCCCTTACTGGGGAAT-GAGAGGGTCCCCTACAGAGTGGCGGGAGGGTCAGTGGGTGGTGGCTGCTGCCTGCCGGAAGGACACC--GCTATACCGTCTCTCATCTGCAATCAG Microtus_lusitanicus GTAGCCACCCAACGGCAGCAGGGTGCAGGAGCAGCTCAGCACCATGGCTGCGTCCCAGAGTAGCTTTGAA-------CCCTTTGGTTGGGCCACACCTAAAAGCCACACTCTCTTGTCTCTGAAGATGGCACCAGTCCCTGGCTGGTTGACAGTGTTGAGTCCCTCACCCCTTACTGGGGAAT-GAGGGGGTCCCCTACAGAGTGGCGGGAGGGTCAGTGGGTGGTGGCTGCTGCCTGCCGGAAGGACACC--GCTATACCGTCTCTCATCTGCAATCAG Mus_musculus GTAGCCACCCAACGGCAGAAGGGAGCAGGGCCAGCCCAGCACTGCAGCAACCGCCCAGACTGACGTGGAA-------CCCTTTGGTTGGGCCACATCCCAGAGCTGTACCCTCTTGCCTCTGAAGATGGCTCCAGTCCCTGGCTGGTTGCCAGTGTTAAGTCCTTTACCCCTTACTGGGGAG--TGAGGGGTCCCCTACAGAGTGGCAGGAGGGGCTGCTGGTGGGTGATGCTGCCTGCCGGAAGGACACCG-GCTATACCGTCTCTCATCTTCAATCAG Myocastor_coypus GTAGCG-CCACACTGGGGCCCTGTCCCTCTGCCCATCACCATGGTGACCAGAGCCTGAGCCGGCATAGGACCCCTACCCCTGAGGTGGAGGCATCT----------------------CCTCAAATTGGCTTCAGCCC-------------------GGGTCTCTTGCCCC-GGCTGCAGAATGAAGGGACCACCCTGGAGTGTGCCGGAGGGGGAGCCGGGTGGTGGTTGCCGCTGGTCGGATGGACGTCGTGCTATAACATCTCTTATCTGCAATTAG Octodontomys_gliroides GTAGCACCCGCG-CGGGGCCCCTTCCCTCTGCCC-CTGCCACGGTGACTAGAGCCTGAGCCGGTGTAGGACCCCTGTCCGTGAGGTGGAGGCATCT-----------------------CCTAAATGGGCTTTGGCCC-------------------GGGTCTCCTGTCCC-GACTGCAGAATGAAGGGACCCCCATGCAGAGTGCCGGAGGAGAGGCCGGGTGGTGGCTGCCGCTGGTCGGAAGGACACGGTGCTATAACATCTCTTATCTGCAATTAG Proechimys_guairae GTAGCGCCCACACCGGGGCCCTGTCCCTCTGCCCATCACCATGGTGACCAGAGCCCGAGCCAGCATGGGACCCCTACCCCTGAGGTGGAGGCGTCT----------------------CCTCAAATTGGCTTCAGCCC-------------------GGGTCTCCTGTCCCGGGCTACAGAATGAAAGGACCGCCCTGGAGGGTGTCAGAGGGGAGGCCGGGTGGTGGCTGCCGCTTGTCGGAAGGACGTCGTGCTATAACATCTCTTATCTGCAATTAG Rattus_norvegicus GTAGCCACCCAACGGCAGGAGGGTGCAGGACCGGCCCAGCACCGCGGCAACCTCCCAAACTGACTTGGAA-------CCCTTTGGTTGGGCCACATCCTAGAGCCATACCCTCTTGACTCTGAAAATGGCTC------CTGGCTGTTTGACAGTGTTGAGTCCCTTACCC--------------TGGGGAGTCCCCTACAGAGTGGCGAAGGGGGCTGTTGGTGGGTGGCGCTGCCTGCCGGAAGGACACCG-GCTATACCGTCTCTCATCTGCAATCAG Sciurus_vulgaris GTAGCCACCTGACG--GGGCCTGTCCATCAGCC-GCCGCCATGGTGACCAGCTCCCAAACTGGCTTAGAACCCACGTCCCTTTGAT-AGGCCACCCTCTAGAGCTGCGCCCTCTGGTC-------------TCAGTCCCCGGCTGTGTGGCAGATCTGGGTCCCTTGCCCCCCACAGGAAATGAGGGAGACCCCCCTGGAGAGTGGCGGTGGGGGCGGCGGGTGGTGGCTGTCGCT-GCCGGAAGGACGCGGTGCTATAACATCTCTTATCTGCAATTAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19794] TITLE 'Mammal Nadsyn1-intron-4'; LINK TAXA = TaxaForAnalysisStep12649; DIMENSIONS NCHAR=294; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Apodemus_flavicollis GTGGGGTGTCTGGCCTGTCGGGGATACCTTGTGGCACAGCACACGGAGGAGAATCAAGGTTGGGTTTGTTTGGGTTTTTTATCCTTGCCACCTGGACAATAGACAAGGTAAGGGAAGTCTGGCCACAGCCTCCAGCAAATTTGCATGATGGTGGATGGAGCCATGACCAAAACAGCTTAACCCTAGAGAAAGATTTCCCAGGGCTGCAGACTTGAAACAGCCCCAGAAAGTCTGCTCCTTTTCATAGAGAACTAAGTTTGGAGTTTGGTGTGAACAGTTTTTTCACCGCCATAG Atherurus_macrourus GTAAGCCGCTGGGCTTGCTGGAGGCCTTCTCGGGGACACCACACGAGAGAGACCCAGAGGAT{AG}GGGCCTGGGG---ATGCGTCCTTGTGGCCTTG----TGCTCTAGGTGAGGGAGCACTCTTTATAGCTGCCTGCAAAGCCACCCACCAGTGGGTGGAGCTGTGAGATGAAAAGCTGAAGCTCAGAGGAGATTTGCTCAGGGCTCTGTTCTTGAGCCTGCCTGGCATGGGTTATCTG---GCTTTGGTGATGATGATTGGAGCTTGGTGTGAGCAGCCCTGTTCCCGCTGCAG Cavia_porcellus GTAGGGCCCTGGGCTTGCCACAGCCCTTTTCAGGGACACCAAACGAGACACCCAGAGGGGGTGGGGCTTGGAG---GCGCGATCTTTCAGCCTGAATGTTAATCTAGGTGAGGGAGAACCCCTTTCAGCTGCCTGTGAGGTCACTTTTAGATGGATGGAGCTGTGAGAC--AAAGCTGAAGCTCAGAGGAGATTTATTCAGGGCTTGGTTCTTGAACCGACTC--CATGTATAACCTG---GCTTGGTTGGTGATGACTGCAGCTTGTCCTGACCTGCCCTGTTTCCGCTGTAG Cynomys_ludovicianus GTGGGGCTCTGGGCTTGCTGGAGACTCCCCTGGGGCCAATGCAC--------CCCAGAGGGAGGGCCCTGGGG-----CCCTGTGTGCTACCTGGACACTGGGCTAGGAGGGTG---TCTCCTCACCATGTCCAGCAGGGGCACCTGCCAGTGGGTGGGGCTGTCAGGGAC-------------------{AG}GATTTGTCTGGGCTGCAGTCTCGGGCTGGCTCTGCGTGGCGGTGCTCAGTCCTCTG-TGGCGGTGGCTAGAGCGCTGAGTGAGCCCCTTCCTGTCT----TAG Glis_glis GTGGGGCCCTGGGCTCTCTGGAGGTGGCTTTAGATTCACATGACGGAGTGGCACCCGGGAGCGGGGCTTGGGG{AC}CATGCCCCTCTTG----------------CTAGATGAGGGCGGTCTCCTGGCAGCTGACAGCCGAGCCACCTGCGG-----TGTCGTCGTG-GGAGGGCAACTGAAGCCCAGAGATGATTTTCTCAGGGCTCCGTGCTTAGGCCGGCTCCGCGTGGTGTTACCA---------------------CGACCTCTGTGTGAGCGGCCCTGTTTCCTCTGCAG Homo_sapiens GTAGGGCTCTCAGCTTGCTGGGAGGCTGCTTCTGGCCGATGCACGAGAGAGACGCAGAGGGTGGGGGTGTGGGGACACAGGTCCTTGTGGCCTGGAAGCCAGTCCAGGTGAGCAAGTTCCCTTGGAAGCTGCTGGGGAGGCCACCTTCTGATGGATGCAGCCATG--ATAGAAAGCGGAAGCCCAGAGAAGATTTGCTCGGGGCCCCATTCTCAAGCTGACTCTGCATGGCATCACCTCGTCACTTGGTGGCACTGACCGGAGCCCGGTGTGCACAGCCCTGTTCCCTCTGCAG Hydrochoerus_hydrochaeris ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Microtus_duodecimcostatus GTAAGGCGCCTGGCTGGTGGGGAATATCTTGAGGCACCGTACACGAAGGAGACCCAAGGTTGAGTTTGTTTGGGCTTTTTATCCTTGTCACCTGGACAATA---AAGGTGAGGGAAGTCTTCTGGCAGCTTCCAGCAAAGTCACTTGTTGGCCAGTGAAGTCATGAAGCAGAAAGCTTAAGCCTAGACAAGGCTTTCTCAGGGCCCTGGGCTTGAACCAGCTTCGGTGACCTCACCCTATCCTATGGGG---TAAGTTTGGAGGTTGGTATGATCAGTCCTTTTACCACTGTAG Microtus_lusitanicus GTAAGGCGCCTGGCTGGTGGGGAATATCTTGAGGCACCGTACACGAAGGAGACCCAAGGTTGAGTTTGTTTGGGCTTTTTATCCTTGTCACCTGGACAATA---AAGGTGAGGGAAGTCTTCTGGCAGCTTCCAGCAAAGTCATTTGTTGGCCAGTGAA{AG}TCATGAAGCAGAAAGCTTAAGCCTAGACAAGGCTTTCTCAGGGCCCTGGGCTTGAACCAGCTTCGGTGACCTCACCCTAT{CT}CTATGGGG---TAAGTTTGGAGGTTGGTATGATCAGTCCTTTTACCACTGTAG Mus_musculus GTAGGGTGCCTGGCTTGTTGGGGATACCTTGAGGCACAGCATACGGAGGAGACTCAAGGTTGGGTTTGTTTGGGCTTTTTATCCTTGCCACCTGGACAATAGATAAGGTGGGGGAAGTCTCCTTGCAGGCTACAGCAAAGTCACATGTTGGTGGATAGAGCCATGAAACAGAAACCTTTAGCCTAGAGAAGGTTTGCTCAGGGCCCTGGTCTTGAGCCAGC-TCAGTAGCCTTATCTTATCCTATGGA----CAGATTTGAAGTGTGGTGTGAACAGTTTTTTCACCGCTGTAG Myocastor_coypus GTAGGGCCCTGGGCTTACCAGAGGTCTTCTCAGGGACACCACACGAGAAAGACCCAGTGAGTGGGGCTCGGGG---CCACGTCCTTGTGGCCCGAATGCTGCTCTAGGTGAGGGAGAAAGCCTTATAGCTGCCTGCAGGGTCACCTGTTGGTGGGTGGAGCTGTGAGACAAAAAGCCGAAGCTCAGAGGAGATTTTCTCAGGGCTCAGTTCTTGAGCCAGCTGTGCATGTGTGATCTG---GCTTGGGTGGTGGTGACTGGGGCTTGATATGAGCATCCCTGTTCCCGCTGCAG Octodontomys_gliroides GTAGGGCTGTGGGCTTGCCAGAGGTATTCTTGGGGACACCACACGAGAAAGGCCCAA-GGGTGGGGCTTAGGG---TCACATCCTTGTGACCTGAATGCTATTCTAGCTAAGGGAGAAATCCTTACAGCTGCCTATAAGGTAAACTGCCGGTACATGGAGCTGTGAGACAGAAAGCTAAAGCTCAGAGGAGATTTGCTCATGGCGCAGTTCTTGAGCCAACTCTGCATG-----------------GGTGGTGGTGACTGGAGCTTGTTGTGAGCATCCCTGTTCCCGCTGCAG Proechimys_guairae GTAGGGCGCTGGGCTTACCAGAGGTCTCCTCAGGGATACCACATGAGAAAGACCCAGGAGGTAGGGCTTGGGG---CAACGTCCTTGTGGCCTGAATGCTGCTCTAGGTGAGGGAGAAATCCTGACAGCTGCCTGCAGGGTCACTCGTTGGCGGGTGGAGCTGTGAGACAAAAAGCTGAAGCTCAGAGGATTCTTGCTCAGGGCCCGGTTCTTTAGCCAGCTGTGGGCGCGTTGTCTG---TCTTGGGTGGTGGTGACTGGGGCTTGATGTGAGCGTCCCTGTTCCCGTTACAG Rattus_norvegicus GTAGGGTGCCTGGCCTGTCGGGGAGACCTTGTG-----GCACACGGAGGAGACTCAAGGTTGGGTTTCTTTGGGTTTCTTATCCTTGCTACCTGGACAATAGACAAGGTGAGGGAAGCTTCCTTGCAGCCTACAGCAAAGTCATGTGCTGGTGGATGGAACCATGAAACAGAAAACTTAAGCCTAGAGAAGGTTTGGTCAGAGCCCTAGTCTTGAACCAGC-TCAGTAGCCTTACCATATCCTAT-GGA---CAGATTGGGAGTTTGGTGTGAACAGTTTTTTCACTGCCATAG Sciurus_vulgaris GTGGGGCTCTGGGCTTGCTGGAGGTGC------GGCCGATACAC--------CCCAGAGGGTGGGGCCTGGGG-------CCCTGCGTTGCCTAGACAGTGGCCTAGGTGGGAG--GTCTCCCCGCTGCTGCCAGCAGGG-CGCCAGCTGGTGGATGGGGCTGTCAGGGATGG-----------------GATTTGTTTGGGGCTGCATTCCCAGGCTGGCCCC{GT}CATGGTGCTGCCTAGCCCTCTGGTGGCAGTGACTGGAGCCCTGTGTGAGCAGCCCTGTTCCTTCCACAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19792] TITLE 'Mammal Dhcr24-intron-7'; LINK TAXA = TaxaForAnalysisStep12649; DIMENSIONS NCHAR=254; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . ] Apodemus_flavicollis GTAAGCGGGCATGGTCCCAGGGAACCCAGGCCTTCTCCCTAGAGCTGTGTCACCCACCCATCTTTGTGTATCTGCCCTCTGGGCCTCGGTTTCTCCAAGTTCACAATTAGGGGTCTTGGCCACTCGGACCGAGTGTCCTGATAAGC--------TGGGAGTGTCTGAGTGGGGTGCAGAGTTGCGGGATGTGGGTGAACTAGCTCTGCTACCTGCTGGGAAAAGACAGGCCG-ACCTGTTTCTCTGACCTCTCA Atherurus_macrourus GTGAGCAGGCGCGGTCC{AG}GGGAC-TTCACAGTCTCTCCCCTGAGCC------CACGCCCACCCAGTCGCACCGGCCCTCTCAGCCG----------------------------------CTTGGCAGTGGAGCATTTCTCTGAACTGCTCCCGTGGTGGAGTCAGAGGAGGCGGCAGAGTGCGGGAGGCTGGGAG------------TGTCTGCTGGCGAAGAGGCACCAACGCCTGCCTCGCCGGCTTCCCC Cavia_porcellus GTGAGCAGGCGTGGCCCCAGGAC-TTCACAGCCTCTCCCCTGAGCC-CACAGCCCACCT-GCTGGGCCTGTCTGCCCTCTCGGCCTCAGTTTTTCCAACTGTAAAGTCAGGCTTTGTCCCCTTGGCAGTGGAGCACCTCTGTGAACAGCTCCTGTGGGGGCATCAGAGCAGA--GCAGGGTGTGGGAGGGTGGAAG---------TGTCACCTGCCCAAGAAGAGGCACCATTGCCCACCTGGCCGGCCTCCCC Cynomys_ludovicianus GTGAGCGGGCGGGGTCCCACCGAATCCCCAA-GTCTTGTCTAAGCCACATGCCCCACTT----TGACAGGCCTGCCCTCTGGGCCTCACCTTCCCCAACTACAAAATGGGGGGCTCGTCCCTCAGCGATGGAGCACCTCTGTGGACCACTCGGGTGGGGGAGTCAGAGTCTTAGGCAGGA----GGAGGGGGCGGGCTACAGCCCTGTCACCTGCTGGAGAAAAAGCACCAATACCCTCCTCCCTGGCCTCCTT Glis_glis GTGAG---------TCCC-------------CGTCCCCTCTGAACT--GTGCCCCACCT----CCACAGGCCTGCC--GCAGGGCCTCATCTTCCCAACCGTAAACCAAGGGCCTGTCCC-----------GGCACTTCCATGGACTGTTCCAGTGGTGGAGTTGGAGGATACTGCAGAGTTGGGGATGGGGGACAGCCATGCCCTGCCACCTACTGGAGAAGTAGCTCCAATGCCTGCCTCCTTGTCCCCCC- Homo_sapiens GTGAGCAGGTGCATTCCCTTGGAATCCATGGCTCCTCCCCTGAACCGTGTGACCGACCT----TGGGCACACTGCCCTCTGGGT----GTTTTCCCAACTTTAAGATGAGGTCCTTGTCCCTCAGTGATGGAGCACTCCCATGACCTGCTCCGATGGTGGAGTCAGAGAATGCTGCAAAGTGGGTGGGTATGAGCGGGCCAGCCCTGTCACCTGTTGGAGAAAAAGCACCAATACCCACCTCCCTGGTCTACCC Hydrochoerus_hydrochaeris GTGAGCAGGCATGGCCCCAGCAC-TTCGCAGCCTTT--CCTGAGCC--ACAGCCCACCT-GCTGG--------GCCCTGTCAGCCTCCGTTTTTCCAACTGTAAAATCAGGCTTTGTCCCCTTGGCAGTGGAGTACCTCTATGAATGGGTGCTGTGGTGGCATCAGAGCAGA--GCAGGGTGTGGGAGGGGGGGAG---------TGTCACCTGCCCCAGAAGAGGCTCCATTGCCCACCTCGCCGGCCTCCCC Microtus_duodecimcostatus GTAAGCGGGCATGCTCCCATGGGACCCAGACCTCCTCTCCAGAGCCATGT----CACCCAGCTTTGTGTATCTGCCCTCCGGGCCTCAGTTCCTCCAACCATAAAATGAGGATCTTAGCCCTCAGCCAGGGAAGGGTCTGATGGGCTGCT--GGTAGGAGTATCTGCGAGAGCTGCAAACTGGTGGAATGTGGGCAGGCCAGTCCT{CG}CTACCTG------------AGACCA-ACCCACTTCCCTGGCCTCTCA Microtus_lusitanicus GTAAGC{AG}GGCATGCTCCCATGGGACCCAGACCTCCTCTCCAGAGCCATGT----CACCCAGCTTTGTGTATCTGCCCTCCGGGCCTCAGTTCCTCCAACCATAAAATGAGGATCTTAGCCCTCAGCCAGGGAAGGGTCTGATGGGCTGCT--GGTAGGAGTATCTGCGAGAGCTGCAAACTGGTGGAATGTGGGCAGGCCAGTCCTGCTACCTG------------AGACCA-ACCCACTTCCCTGGCCTCTCA Mus_musculus GTAAGCGGGCGTGGTCCCATGGAACCCAGGTCTTCTCCCTAGCTCTGTGTCGCCCACCCATC--TGTGTATCTGCCCTCTGGGCCTTGGTTTCTCCAACTATACAATTAGGATCTTAGCCCCCAGGAACTGAGTACCCTGATAAGCTGCTTTAGTGGAAGTATTTGAGTGGGTTACAAAGTGCAAGGATGTGGGTGAGCTAGTCCTGCTACCTGCTGGGAAAAGACAGACCA-AGCTGTTTCTCTGACCTCTCA Myocastor_coypus GTGAGCAGACCTGGCCCTGGGACATCCGTGGCCTCT-CCCTGATCC-CATAGCTCACCTGGGCAGATATGCCTGCCCTCTCAGCCTCAGTTTGGCCCAGTGTAAAATCAGGCCTTGTCCCCTTGGCAGCAGAGCATGTATCTGAAGGGCTCCTGTGGCGGCCTCAGAGCAG---GCAGGGTGTGGGAGGGTGAGAA---------TGACGCCTGCTGGAGAAGAGGTGCCAGTGCCCACCTCGCTGCCCTCCCC Octodontomys_gliroides GTGAGCAGGCCTGGCTCCGGGACATTGACAGCCTCTCCCCTGAGCC-CATAGCCCACCTGGCCAGGCATGCCTGTCCTCTCAGCTTCAGTTTGGCCAACTGTAAAATCAGGCCTTGTCCCCTTGGCAGTGGAGCATGTGTCTGAATGTCTCCTGTGGCAGTCTCAGAGCAG---GCA-GGTGTGGGAGGGTGGGAA---------TGGCACCTGCTGGAGAAGAGGCACCAGTGCCCACCTCGCCGGCCTCCCC Proechimys_guairae GTGAGCAGGCCTGGCCCCGGGACATTCATGGCCTCT-GCCTGATCC-CGTAGCTCACTAGGGCAGGCATGCCTGCCCCCTCAGCCTCAGTTTGGCCCAGTGTAAAATCAGGCCTTGTCCCCTTGGCAGCAGAGCGTGTGTCTAGGTGTGCTGAGTG----------AGCAGGCGGCAGGGTGGGGGAGGGTGAGGA---------TGACACCTGTTGGAGAAGAGGTGCCAGTGCCCACCTTGCTGGCCTCCCC Rattus_norvegicus GTAAGTGGGCATGGTCCCATGGAACCCAGGCCTTCTCCCTTGAGCTGTGTCACCCACCCATCTTTGTGTATCCGCCCTCTGGGCCTCAGTTTCTCCAGCTGTATGATTAGGGTCTTGCCTCTCTGGGACCAAGTGCCCTGATAAGCTGCTTCTGTGGGGGTATCTAAGTGAGTTACAAAGTTGTGGGATGTGGATGATTTAGTCCTGCTGCCTGCTGAGAAAAAATAGACCA-ACCTGTTTCTCTGACCTCCCA Sciurus_vulgaris GTGAGCAGGCGGGGTCCCACCAAATTCCCAG--TCTTCTCTGAGTCACATGCCCCACTT----CAGCAGGCCTGTCCTGTGGGCCTCACTTTCCCCACCTATAAAATGGGGCCTCAGCCCCTCAGTGATGG-GTTCCTCTGTGGACTGCTTCGGTGGGGGAGGCGGGGTGTCAACCAGGG----GGAGTGGGTGGGCTGCAGCCCTGTCA-CTGCGGGAGGAAAAGCACCAATGCCCTCCTCCCTGGCCTCCCC ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19791] TITLE 'Mammal Catsper3-intron-5'; LINK TAXA = TaxaForAnalysisStep12649; DIMENSIONS NCHAR=303; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Apodemus_flavicollis --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Atherurus_macrourus GTTA?GCTATGCGATCAGATTAGGTGTGGCAGGTGGTGGTAAGGACCAAGTATCTGGGAGAACCAGATGTGTCTCCCTCCTGAAGTGGAGTGGAGGTGATGATATGGGCCCACCCCTCTTCTCCCTGAGTGTATGCATTTGTCTTGCTTCATGAT--GGCTGATAAGACGGGTCTGGCCCCGTGTGGGGGTA-GCTCCTAATGAGGGCCTAAGCAGCAGGGCAAGGTGAGGTGGGGAAGAAGACCAGGGAGGGGAGAGAATGCATCAAGAGCCTGTCCCCGACTCCACTCTTTGAC----TAG Cavia_porcellus GTGAGGCTGTGCGGATCCATCGGGTGTGGCAGGCGGTGGTGAGGGTCAGGTATCAAGGAGAACCAGGTGTGTCTCTATCCTGAAGTGGAGTGGAGGTCTCGAGCTGGGCCC-TCCCTCTTCTCCCTGAGATTGTGCATTTTTCTTTCCTTATGATGGGGC---------GGGGCTGGCTC-GAATGGGGATGCCCTCCTGCTGAGAACCTAGGCAGCAGGGCCAGGGAAGGCAGGGAGGAAGACTGCAGGGCAGAGAG--TGTACTGAGAGCCTTCCCCTGCCTCCACCTCT-GAC----TAG Cynomys_ludovicianus GTGAGGCTGTGCGGGAATGCCAGGTGCGACAGGCAGAGGTGTGGGCCGGGCCTCTGGGGAGAACAACAGTGTCTCTCT-CTGAAACAGAGTGATGGTGGCCTGGTGGGCCCTTCCCTCTTGGCCATGAGCTTGTGCGTTTGCCTA-------------GCCAACAGGAGGGGGCTGGCTCTGT-TGGGGGGATCTTTGTGCTGAAGGCCTGAGCCACA-GGCAAGAAGAGGCAAGGGGCGAGACCAGGTCGTGGGCAGTG-------------TGCTCCTTACTCTACCCTTTGACTCACTAG Glis_glis GTGAGACTGTGCGGGCAGGTCAGGTGTGGCAGGTAGAGGCATGGGCCAGCTCTCTGGGGAAAACAGCTGTGTTTCCCTCCTGAAGTGGAGTGAAGGCAG-AGCATGGGCTCTGCCCTCTTCCTC-------TGGGCCTTAGCCTTGCCTCGTGATGGGGCCCACAGGGCGGGGTCGGCCCTGTGCGGG-GGATCCTTCTGCTGAGGGTCTGAGCCACAGGGCAAGGCTAGGTGAGGAAAATGACCAGGGAGCGG-GAGTATGGGGCGAGGGCCTGCCCCTCACTCTACCCCCTGACTCACTAG Homo_sapiens GTGAGGCCACACGGTCAGGGCAGGTGTGGCAGATGGAGCTGTAGGGCAAGTCTCCAGGGAGGACAGCTGTGTCTTCCCAATGAAGTGGAGTAGAGGTGGCCAGATGGACCTGTCCCTCTCCTCCCTGAGCCAGTGCATTTGCCTTGCCTGCTGATGGGGTCAACAGGACGCGGCTGGCCCTGTGTGGGGAAGTGCTCCTGCTGAGGGCCTGAGCAGCGGTGCAAGACTGGGGAAGAGGAAAGACTGGGTCTGGG----CATGTAGCGAGAGCCTGTAGTTGACTCCATCGTCTGACTCTCTAG Hydrochoerus_hydrochaeris GTAAGGCTGTGCGGATCCATCAGGTGTGGCAGGTGGTGGTGAGGACCAGGTATCAAGGAGAATCAGATGTATCTCTCTCCCGAAGTGGAGTGGAGGTCACAAGCTAGGCCCTTCCCTCTTCTCCCTGAGATTGTGCCTTTTTCTTTCCTTATGATGGAGCTGATGAGACGGGGCTGGCTCTGTATGGGGGTGCCCTCCTGCTGAGAACCTAAGCAGCAGGGCAAGGTAAGGCAGGGAGGAAGACTGCAGAGGGGAGAG--TATATTGAGAGCCTTCCCTTGCCTCCACCTCT-GAC----TAG Microtus_duodecimcostatus GTGAGTCTGTGCGCTCAGGTTAGGTATGGCAGGTAGAGGTATGGGCCAGGTGTCTTGGACACGCACTCGTGTCTTTTTTATGAAGTGATGTGGGGGTAGCCAGGTGACCCCTCTCCTCTTCTCCCTGAGTTCA----------CCACTTCACGATGGGACCGGCAGGCC----------------------------------------TGGGGTTCAGGGCAAGCTAGGCA--GAGAAAGGCTGGGAACGGAGAGCTGCAGAAGAGACACCGTGGTCTTGACTATCTGTTCTGCT-TGCTAG Microtus_lusitanicus GTGAGTCTGTGCGCTCAGGTTAGGTATGGCAGGTGGAGGTATGGGCCAGGTGTCTTGGACACGCACTCGTGTCTTTTTTATGAAGTGATGTGGGGGTAGCCAGGTGACCCCTCTCCTCTTCTCCCTGAGTTCA----------CCACTTCACGATGGGACCGGCAGGCC----------------------------------------TGGGGTTCAGGGCAAGCTAGGCA------------GAGAACGGAGAGCTGCAGAAGAGACACCGTGGTCTTGACTATCTTTTCTGCT-TGCTAG Mus_musculus GTGAGGATGTGTGCTTAGGTTAGGTGTGGCA------GGTATGGGTCATGTTTCTTGGACAAGCAATTGTGTCTT----ATGAAGAGGTGTAGAGCTAACCAAATGGTCCCCCTCCCCAACCCTGCAAGTTCA----------TCACCTTATGATGGGGGCAGCAGACCGGGGCTGGGCCTGTGTGAGGGGGCCTTTCTGCTG-AGGCCTGAGCAGCAGGGCAAGCTAGGCAAGGAGAAGGGCTTGAAATGAAAAGGGTGTA----GGGAACACAATCCTGACTGTATATTCTGCCGTGTTAG Myocastor_coypus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Octodontomys_gliroides T---------GCAGTCAGGTCAGATATGGCAGGTGGTGGTGAGGACCAGATGTCATGAAGAACCAGAGGTGTCTCCCTCTGGAAGTGGAGTGGATGCGGTGAGGTGAGCCC----------TTCCTGAGTGCATGCGTTTGTCTTGCTTTATGATGGGGCTGATGAGACGGGGCTGGTCCTGTACGGGGACGCCCTCCTGCTGAGGGCCTAAGTGGTAGGGCAAGGTGAGGCAGGAGAGGGGA------------GAGTACATATCAAGAGCCTTCCCCTTCA-----CTGATGAC----TAG Proechimys_guairae --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Rattus_norvegicus GTGAGGGGGTGCGCTCGGGTTAGGTGTGGCAGGTACAGGTATGGGCCAGATTTCTTGGACAAGCAATTGGGTCTT----GTGAAGTGGTGTAGAGGTAACCAAACGGCCCC-CTCCCCAACTCTACAAGTTCA-----------CACCTCGTGATGGGGGCACCAGGTCGGGGCTGGCCCTGTGGGTGGGGGCCTTTCTGCTG-AGGCCTGAGCATCAGGGCAAGCTAGGAAAGGAGAAGGGCTTGAAGTGGAAGGGGTGTG----GGGGACACCATCTTGACGGTATATTCTGCTGTATTAG Sciurus_vulgaris GTGAGCCTGTGCGGGAATACCAGGTATGGAAGGTGGAGGTGTGGGCTGGGCCTCTGGGGGGAACAGCTGTATCTCCCT-CTGAAGTCAAGTGAAGGTGGCCTGGTGGGCCCTTCTCTCTTGGCCCTGAGCTCATGCATTTGCCTAGCCTCATGATGGGGCCAATAGGACGGGGCTGGCTCTGT-GGGGGGGATCCTTCTGCTG-AGGTCTGAGCTGCA-GGCAAGGAAAGACAA-GGGCAAGACCAGGTAGAGGACAGTATTCAGTGAGAGCCTGCTCCTTACTCCACCCTCTGACTCACTAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19796] TITLE 'Mammal Smo-intron-9'; LINK TAXA = TaxaForAnalysisStep12649; DIMENSIONS NCHAR=310; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Apodemus_flavicollis GTGGGGTCAGCAGCCGTCTGATCTTGTCCTTCTTCTCTACCCTCAGCTTCATGAGGGCCTTGACAGACTGGGAC---TTCTTAGCAGCTCACCACTGCCCTCTAGGGAACCAGTGCTTTTCAAGGAGGGGCCACAGGAGCC{AG}TGCATTCTAGGCAGGTTTTGTTGCTGTGAAGGCCTCAGCTCCT--GAGTCCTT--AGGACTCCAGGTCCT-----------AAACCTAGAAAGATCCCAGGTCTTTCGATAAATTTGAAAGGAA---GCTACTCCTGCACTCACCAGCCCCACCCCTTCTGTTCTCAG Atherurus_macrourus GTGGGATCAGCAGCCAGCTCATCCTGTCCCTCCTGTCTAATTGCAGCCTCATTTAGGCTTAGACAGCCTCAGGCAGCTTCTCTGTGGCTCATCACTGCCTCCTGGTGAGGGAGTGATCTGAGGGC--------------------------------------------------------------------------------AGGCCCTCCTCCTTCCCTGGAGGGAATGGAATCATTGGTCTTTCAGGAGAATTGATGGGAAGCAGCTGCTCTTCCACTTCCCGTCTCCACCCTTTCTGCCCTCAG Cavia_porcellus GTAGAGTCAGTAGCCAGCCCATCCTACTGCTCCAGTCTACTGTCAGCCTCATTTAGGTTTAG-TAATCTGTGGCAGCTTCTCTGTGGCTCGCCACTGCCCCCTGGTGAATGAGTGATTTGAGGGCCAGGCACACAGGAGCCTCACATGCCAGGCTCACTTCATCACAGGGCAGGTTTGTCCTCCTCAGAAGCCACGAGGGGCCTGAGGCCTTTCTCCTTCTCTGAAAGGAATGGCATCACTGGTCTTTGACAAGATTTGAGGGGAAGCGGCTACTCTTCCACTTCCTGGTGTCACTCTTTCTGCTCTTAG Cynomys_ludovicianus GTGGGATCAGCAGCCAGCTCATCCTGTCCCTCCTGTCTAATTGCAGCCTCATTTAGGCTTTGACGGTCTTGGGCAGCTTCTCAGTGGCTATCCACCGCCCCCTGGTGAGTTGATGACTTGACAGCAGGGTACACAGGAGCCTTGTGTTCTAGGTTCACTTCTTTGCAGGGAAGGCCTCTACTCCTTAGAGTCTTTGAGGCATTTAAGACTCTCTTCCTAACCTAGAGGGAATGGGAC--ACTATCTTTCACAAGATTTGGTGGTAAGGGGCTGCTCCTCCACTCCCC-TCTCCACACTTTCT-----CAG Glis_glis GTGGGATTGGCAGCCGGCTAGT---------CCTGTCTACTCTCAGCCTCATTTAGGCTTTGACAGCTTTGGGCAGCTTCTCAGTGGCTCACTGACGCCCCCTGGTGAGTGGATGATTGGAGATCGGGGCACACAGGAGCCCTGCAGTCTAGGCTCACTTATTTGCGGGAAAGGCCTCTACTC---AGAGTCCTTGAGGGACTTGAGGTCCTCCTCCTAACCCGAAGGGAATGGGATCGCTGGTCTTGTGCAGGA-TCGATGGGAAGCAGCTGCTCCTCCACTTCCCATCCCCGCCCTTTCCGCTCTCAG Homo_sapiens GTGGGCATGGCAGCCAGCCCCTCCTGCCCTGCCCGCCTACCCTCAGCCTTGTTTAGGTTTTGACAGCCTTGG--------TCAGTGGTTCACCGCTGCCCCCTGGTGAGCGGGTGATTGGAGGGCTGGGCACACAGGAGCTCTGCATTCTGGCCCCACTTCTTTGCAGAGAAGGCCTCTACTCCT--GAGTCCTTGAAGGACTTGAGGCCCTCCTCCTTCTCTGGAAAGAATGGCATCGCTGGCCCTTCCCAAGATTTGATGGGAAGTGGCAGCTTCTTCACGCTCCTTCCCTATCCCTTCTGCTCTCAG Hydrochoerus_hydrochaeris GTAGAGTCAGTAGCCAGCCCATCCTACTGCTCCAGTCTATTGTCAGCCTTATTTAGGTTTAGACTATCCCTTGCAGCTTCTCCGTGGCTCACCACTGCCCCCTGGTGAATGAGTGATTTGAGGCCCAGGCACACAGGAGCCTCACATGCCAGGCTCACTTTGTCACAGGGCTAGTTTGTCCTCCTCAGAGGCCTCGAGGGGCCTGAGGCCTTCCTCCTTCTCTGAAGGGAATGGCATCACTGGTTTTTCACAAAATTTGACAGGAAGTGGCTGTTCTCCCACTTTCCAGCATCACTCTTTCTGCTCTTAG Microtus_duodecimcostatus GTGGGGTCAGCCGCCCTCTGGTCTTGTCCTTCCTGTCTACCCTCAGCCCCATGA-GGCCTTGACAGCTGGGGCA---TTCTTAGCAGCTCACCAGTGCCCTCTAGTGAGCCAGTTTTCTGCAAGGAGGTCCCACGGGAGCCTTGCATTCTAGGTGTGCTTGGTTACAGCGAAGGCCTCAGGCTGTCAGGGTCCTC--ACAACTGCAGGTCCT-----------AGGCCA---AGAATCCCAGGCCTTTCCGTAGATTTGAAAGAAAGCAGCTGCTCCTCCATGTTCCAGCCCCGCCCTTTCTGTTCTCAG Microtus_lusitanicus GTGGGGTCAGCCGCCCTCTGGTCTTGTCCTTCCTGTCTACCCTCAGCCCCATGA-GGCCTTGACAGCTGGGGCA---TTCTTAGCAGCTCACCAGTGCCCTCTAGTGAGCCAGTTTTCTGCAAGGAGGGCCCACAGGAGCCTTGCATTCTAGGTCTGCTTGGTTACAGCGAAGGCCTCAGGCTGTCAGGGTCCTC--ACAACTGCAGGTCCT-----------AGGCCA---AGAATCCCAGGCCTTTACGTAGATTTGAAAGAAAGCAGCTGCTCCTCCATGTTCCAGCCCCGCCCTTTCTGTTCTCAG Mus_musculus GTGGGGTCAGCAGCTGTCTGATCTTGTCCTTCCTCTCTACCCTCAGCCTCATGAGGGCTTTGACAGACTGGGGC---TGCTTAGCTGCTCACCACTGCCCTCTAGGGAACCAGCGCTTTTCAAGTAGGAGCCACAGGAGCCCTGCATTCTGGGCATGTTTTGTTGCTGTGAAGGCCTCAGCTCCT--CAGGACTT--AAACCT-----------------------------AGAATCCCAGGTCTTTCGATAGATTTGGAAGGCAGCGGCTGCTCTTGCACTTGCCAGCCCCACCCCTTCTGTTCTCAG Myocastor_coypus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Octodontomys_gliroides GTAGGCTCAGTAGCCAGCTCATCCTACTGATCCAGTCTACTCTCAGCCTCATTCAGATTTTGATGGTCTGCGGCTGCTTCTCCCTGGCTCACCACTGCCCCCTGGTGAGTGAGCGATTTGAGGGCAGGGTGCCCAGGAGCCCCACACC{CT}CAGGCTCACTTCTTCACAGGACAGTCATGTACCCCTCAGAGGCCCTGAGGGACCTGAGGCCTTCCTCTTTCCCTGGAAGGAATGGAATCACTGGTCTTTCATAAGACTTGACAGGAAACAGCTGCTCTTCCCCTTGGTGTCATCACTCTTTCTGCTCTTAG Proechimys_guairae ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Rattus_norvegicus GTGGGGTCAGCAGCCATCTAATCTTGTCCTTCCCCTCTACTCTCAGCCTTATGAGGGCCTTGACAGACTGGG-C---TTCTTAGCAGCTCACCGCTGCCCTCTAGGGGAACCAGAGTTTTGGAGGAGGAGCCGCAGGAGCCCTGCATTCTAGGCATGTTTTGTTGCTGTGAAGGCCTCTGCTCCTCAGAGTCCTC--AGGACTCCGGGTCCT--------------------AGAATCCCAGGCCTTTCCACAGACTTGAAAGGAAGT-GCTGCTCCTGCACTTGCAAGCCCCACCCCTTCTGTTCTCAG Sciurus_vulgaris GTGGGATCAGCAGCTAGCTCATCCTGTTCCTCCTGTCTACTTGCAGCCTCATTTAGACTTTG-CTGTCCTGGGCTGCTTCTCTGTGGCTAACCACCGCCCCCTGGTGAGTTGGTGACTTGACAGCAGAGTACACAGGAGCCCTTTGTTCTAGATTCACTTCTTTGCAGGGAAGGTCTCTATTCCTTAGAGTCCTGGAGGCACTTAAGACCCTCTTCCTAACCTAGAGGGAATTGGAC--ACTGTCTTTCACAAGATTTGATGACAAGTAACTGCTCCTC--GCTTCCCTCTCCATGCTTTCTGCTCTCAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19798] TITLE 'Mammal Wls-intron-7'; LINK TAXA = TaxaForAnalysisStep12649; DIMENSIONS NCHAR=351; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Apodemus_flavicollis GTGAGCAGATACCAGAGTTACTCCAGGATGAAATGTGCCTTTCTATATCTATTTCTATCTTTCTAGGAAGAAT-TTTGAAAT-AAGCATGATGGTTGGGGATCCATGGGA------TACTGGAGAGGTCAAAATCCTCAAATGAAGTCTGG-----TTTCGAAGGCTTAGACCTTTATATATGAAAAGTGCTTGGCCTCTTATATTCTA-AAGCTCTGCATCCCCTTAACTCTCTGAAG---TTTATTTTCTCAGTATAGTACACCCCCTACCAGTTGCAAGAGAAGCTCTGTTCTGTCTTTGTGTTAT-----------CTCTTCATCTTGTTTGGTTTTGTTTTTATAG Atherurus_macrourus GTGAGCAGGTGCCCGTAGGACTC{AC}GAACCGAGAGGTG-ACCACCGTGTCCACACCTGCCTCTTCCGCGGGGGGATTTGAG{AG}AGGACAACAGT-GTTGGGGGCCTTTGAGATGAAAGCACTGGGTGTGATCCTGCCCTCAA{AG}CCAGGCCTGGGACTTGGCCAAGTGTCCAGCCCTTCAGAGTCACAAAA{CT}CCTC{CT}GGCGACTTTGCTCTCTGAG---TGTCTCTCGCTAGTTCCCTGTGATGCCTCATGGTCTGAACACAGCTCCT-CTCTCCCAGCCGGGAGCGAAGTCCCTCTTTGCCTTAGCAGTGATCCTACCCCATCTCTCCTTCTCATTTCTTTTTGTTTTTGCAG Cavia_porcellus GTGAGCAGGTGCCCC-AGGCCTC-AGCACAAAAGGTG-----CATGACCTCCCCCAATCTCTTCCAAGGGTCAGTTTGAGAA-------GGTGGTTGGGAGCCTTTAGGA---AGTCACTGGGTGTGGTCATGTCTTCAGGTCCAGACTGGGCTTCAGTCCAATGCATAGCCCCTTAGAGTTGCAAAACTTCTGGGCCATCAAGCTCTCTCCAGCTTGTTTCACTGTGGTTCTCTGTGATGCTGC-TGGTCAGGGCACAGCTCCTCCTCCCCCAGCTAGAGACAAAGTCCTGCTTCGCCTTAGCAGCAGTTACACCCCGGCTTTCCCTCTTGGTTCTTTTTTTCTCTGTAG Cynomys_ludovicianus GTGAGTAGGTACCTGTGGGACTC--AGCTGAA-TGTGCATCCCTGTGAACACTTCCA--TCTTTAGGAGGAGTGTTTGAAAGGGAGAAGGGTGGTGAGGAGCCTCTGGGGTGAAAGCATTGTACATATTCATATCCCCAGAGAAAGACTGGGACTAGAGCCAGGGACTAAGTCTTTAGAGTTACAAAATGTTTGCGCTGATATATTCTGCTAGAT-TGTTTCACTTTAGCTCTCTATGAGGTTTCTAAGTCTGAATTCAGCTCCTTCCCTTCCAGCTGCAAAAAGAGTTCCGCCTTGCCTTTGTATTAAT--TGTCTTGCCTTTCCACCTCGTTTTTTTTTTGTTTTGTAG Glis_glis GTGAGCAGGTGCCTATGGAACTCTGAGCTGGAATGTGCATCTCTGTGCCCTCCCCCATCTCTTTAGGAGGAGCATTTGAACAGGAGAATGGTGGTCGGGAACCTCTGGGATGAAAGCACTGGACATGGTCATGTCCTTAGATAAAGACTGAGACTGAGTC--AGACTTGGCTCTTTATAGTTGCAAAACGTTTGGGCTGATATATTCTACAAGTTCTGTTTCCCTTTAGTTCTCTGTGAGGTTTCTTAGTCTAGACATAGCTCCTACCCCTCCGGCTGCAA---AAGTTCGACTTCGCCTTTGCATTAATCTTGTCTTGCTTTTCCATCTCATTTTTTTTTTGTTTTGTAG Homo_sapiens GTGAGCAAGTGTTTGTGGGACACTGAGCCAAACTGTGCATCACCACGCCCACTCCTGTCATTTTAGGAGGAGTGTTTGAAAAGGAGAATGGTGGTCGGGAACCTTTGGTTTGGAAGCACTGGACGTGGTCACATCCTCAGACAAGGTCTGGGATCAAATCAAAGGCACAGCTCTTTACAGTTGAAAAATATTTGGGCCGATGTATTCTACAAGCTTCATTTCTCTTTAGATTTCTGTAATGTTTTTTAGCCTAAATACAGCCCTCACCCCTGCAGCTGAAAAGGAAAGTTCCCGTTGCCTTTGTATTAATTGTGTCTTGCCTTTCCATCTCATTTTCT-------TTGTAG Hydrochoerus_hydrochaeris GTGAGCCAGTGCCCCGGGGCCTC-AACACAGAGGGTG----ACGCCGCCGCCCCCCATCTCTTATGCGGGGCGATTTGAGAA-------GGTGGTTGGGAGCCTTTGAGATGCAGTCACTCGGTGTGATCACGTCCTCAGGTCCGGACTGGGCTTCAGTCCAATGCACAGCCCTTTAGAGGTGCAAAGCTTCTGGGCCAGCGCACTCTCCGAGCCTTGTTCCACTGCGGTTCTCTG----------TGGCCTGGTCACAGTTCTTCTTCCCCAAGCTGGAAGCAAAGTCCTGCTCTGCCTCAGCAGCAGGCGCACCCCAGCTCCCCCCGGTTCTTTCCCCCTGTCTCCTAG Microtus_duodecimcostatus GTAAGCAGATATTGAAGTCACTCCAAGATGAAATGTGACATTCCTTGTCTACTTCCATCTTTCTAGAAGGAGT-TTTTAAATGAAGAATGGTGGTTGGTTGTCCATGGGATTAAA-TATTGGAGAGGTC-ATATGCTCAGATGAAGTCTGTGACAAAACCAAAGGCTTATCCCTATATACATTCAAAGTGCTTTGGA---TATATTCTC-AAGCTCTATATCCCCTTAACTCTCTGAGG---TTTATTTTCTAAATATGGTACACCCCCTACCAGCTTCAAGAAAAGCTCTGCTCTGCACGTGTATTTCA----------TTTTCCATCTTGTTTGTTTTTGTTTTTATAG Microtus_lusitanicus GTAAGCAGATATTGAAGTCACTCCAAGATGAAATGTG{AG}CATTCCTTGTCTACTTCCATCTTTCTAGAAGGAGT-TTTTAAATGAAGAATGGTGGTTGGTTGTCCATGGGATTAAA-TATTGGAGAGGTC-ATATGCTCAGATGAAGTCTGTGACAAAACCAAAGGCTTATCCCTATATACATTCAAAGTGCTTTGGA---TATATTCTC-AAGCTCTATATCCCCTTAACTCTCTGAGG---TTTATTTTCTAAATATGGTACACCCCCTACCAGCTTCAAGAAAAGCTCTGCTCTGCACCTGTATTTCA----------TTTTCCATCTTGTTTGTTTTTGTTTTTATAG Mus_musculus GTGAGCAGATATCAGCATCACTCCAGGATGAAATGTACCTTTCTATGTCTACTTCTATCTTTCTAGGAAGAAT-TTTGAAATGAAGCATGGTGGTTGGGGATTCATGGGATGGAA-TATTGGAGAGGTCAATATCCACAGATGACATATGGGACTAAGTCAAAGGTTTAGTCCTTTATATATGCAAAGTGCTTG------CATATTCTA-AAGCTCTGCATCTCCTTAACTCTCTGAAG---TTTATTTTCTAAATATAGTACACCTCCTCCCAGTTGCAAGAGAGGCTCTGTTCTGCCTTTGTGTTAT-----------CTCTTCATCTTGTTTGGTTTTGTTTTTATAG Myocastor_coypus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Octodontomys_gliroides GTGAGCAGGTGCCAT-GGGACTC-AGCCCAGAAGGTG-ACTACTGCCTCCCT-TTCAGGCAATCTG-AGGGGACTTTGTGAAGGAGAGTGGCAATTGGGAGCTTTGAAG-TGAAAATGCTAGGTGTGATCACGTCCTCAGATCCAGACTGGGCCTACAGCAAATGCATAACCCTTTCAAGTGGCAGAACTTGTGGGCAGTTGTGCTCCCCAAGCTCTGCTTCACTGTAGTTCTCTGTGAGGCTTTGTGGTCTGGACACAGCTCCTCCTCCCCCAGCTGGGAGTGCAGTCCTGCTTTGCCTTAGCGGTGATTACAGCCCACCGTTCCCTC----TACGCTTTGTCTTTGCAG Proechimys_guairae GTGAGCAGGTGCCGT-GGGACTC-AGCCCGGAAGGTG-GCTACCACCTCCCT-TGCAGTCCATCTGTAGGGGGCTTTGTGAAGGAGGGCGGCAGTCGGGAGCCTTGGGGCTAAAAAGGCTGAGTGCGATCCCATCCTCAGATCCAGACTGGGCTTCAGTCAA---CATAGCCCTTTCGAGTTGCAAAGGTTGTGGGCAATGGTGCTTCCTGAGCTCTGCCTCACCGTGGTTC-CCGTGATGCTTTGCGGTGCGGACACAGCTCCTCCTCGCCCTGCTGGAAGTGAAGCCCTGCTTTGCCGAGGCAGTAACTACAGCCCACCTTTCCCTC----TGTCTTTTGTCTTCGTAG Rattus_norvegicus GTGAGCAGGTACCGGAGTCATTCCAGGATGAAATGTGCCTTTCTATGTCTACTTCTATCTTTCTAGGAAGAAT-TTTAAAATGAAGCATGGTGGTTGGGGATCCATGGGATGGAA-TATTGGAGAGGTCAACATCTTCAGATGAAG-CTGGTACTAAGTCAAAGGTTTAGTCCTTTATACATGCAAAGCACTTGGCCTCTTATATTTTA-AAGTTCTGCATC-CCTTAACTCTGTAAAG---TTTATTTTCTAAATAAAGTATACCCCCTACCAGTTGCAAGAGAAGCTCTGTTCCGCCTTTGTGTTAT-----------CTCTTCATCTTGTTTGTTTTTGTTTTTATAG Sciurus_vulgaris GTGAGCAGGTGCCCGTGGGACTCTGAGCTAAA-GGTGCATCCCTGTGCCCACCCCCATCTCTTTAGGAGGAGTGTTTGAAAGGGAGAAGGGTGGTTGGGAGCGCCTGGG{AT}TGAAAGCATGGAACATGTTCATATCCCCAGATAAAGACTGGGACTAGAGCCAAGGACTAGCCCTTTAGAGTTACAAAATGTTTGGGCTGATATATTCTGCCATCTCTGTTTTACTTTAGCTCTCTATGAGGTTTCTGAGTCTGAATTCAGCTCCTATCCTTCCAGCTGCAAAGAAAGTTCCACCTTGCCTTTGCATTAAT--TGTCTTTCCTTTCCACCTCGATTTTTTTTTGTTTTGTAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19790] TITLE 'Mammal Agxt-intron-10'; LINK TAXA = TaxaForAnalysisStep12649; DIMENSIONS NCHAR=273; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Apodemus_flavicollis GGGCTTTGTAGCCAGAGGCACTAGCTCTTATCAAGTCCCACTGCACAGCTCATCTGTGTTGGGTCACTGCAGGGAACAGCCTGATCACTTCAAGTAGAATATCCTCAGCCCTCTCCACCACAGGGGAGGTCACACA---------------TTTACCAGGTCCATTCTGCTGTGTGACCGTCCCTGGCCATGCCCCTGAA--CTCCATGTTTTGGGTACAGTGAGGAGGGCTGGCTCTGGCCCCCTGACGTCTGCCTGCTCCATTCCTACCAG Atherurus_macrourus GGCCC---------AGGACAGCAGCTCTTG-AGAGCGTGAGGGC------------CGGAGGGACCCTG-----AAGGCTTTTCCCA-TCCGCTTACAGTGTCCATCCTTCTGTCCCTGTGGGAGGAAACCGCAGACCTGGTCCAGCGCATTCTCCCCAGCCAGCCATGCTAAGTGACCCTCACTGACCACCACGCCGGCCCCTTCTCCAGCTCTGTGGCACAGTGGGAGCTGACCTGGGTCCCTCGTCATCTGCCTG-CCTGCACCCACCAG Cavia_porcellus GACTC---------GGGACAGCAGCTCTCTGAGAGCAGGAGCAC------------TGGGAGGACACAGCAGTGAGGGCCTTTCCTG-CCCACTTGGAATGGGCTTCCTCCCATCCCCTCGGGGGGAAACCTCAGGCCTGGTCCAACAGACTCTATCAGGCCAGCCATGCTGAGAGACCTTCTCTGCCCACTGGGCTGGC--CTTCTCCAGCTCTGTGCCATAGTGAGGGTTAGCTTAGGCTCACCAGCATCTGCCTG-CTTGTGCCCACCAG Cynomys_ludovicianus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Glis_glis --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Homo_sapiens GGCCGGGGTCATCCGAAAGCCCAGCTCTCCAAGG--------------------------GGTATCCAGTAAAGGCAGCCTTTATGATTCCACTCGGAACATCCTTCCTTCCCTCTGACCAGACGGAAGCCCCACGCCTGGCCTGGCTGTGTCTCTGAG--TGGCAGTGGGGAGGGACCTTCACTG--CACCACCCTGTCCTCCCGTGTGGCTGCGGGTGCAGAGGGAGGCTGGCCTGGGTGCTCTGACGTCAGCCCGCCCTGTGCCCCCCAG Hydrochoerus_hydrochaeris GGCCCAGGACAGCAGGGACAGCAGCTCCCC-AGAGCAGAAGTGC------------TGGGGGGACGCAGTAGTGAGGGCCTTTCCTG-CCCACTCGGAATGGGCTTCCTTCCGTCCCCACGGGGGGAAACCTCAGGCCTGGTCCAGCAGACTCTGTCAGGCCAACCATGCTGAGTGACCTTCTCTGCCCACAGGGCCAGCCCCTTCTCCAGCTCTGTGCCACAGTGGGGGCTGGCTTGGGCTCCCCGACATCTGCCTG-CCTGTGCCCACCAG Microtus_duodecimcostatus -----------CCAGAGGCACTAGCCTGTATTGAGCCCTGCTGCACACGCCCCACCTGTGGGGTCACTGCAGGGGAA-----CAGCACCTCAGGTAGAATATCCTCAACCCTCTCCA-CACAGGGAAAGTCACACATCAG----------CTTTACCAGGTCCACTCTG----------------GCCCCCAACCCTGGACTCTCTATGTTTTGGGGACAGAAGGGAAGGCTGGCTCTGGCCCCCTGACATCTGCCTGTTCCACGCCTGCCAG Microtus_lusitanicus -----------CCAGAGGCACTAGCCTGTATTGAGCCCTGCTGCACACGCCCCACCTGTGGGGTCACTGCAGGGGAA-----CAGCACCTCAGGTAGAATATCCTCAACCCTCTCCA-CACAGGGAAAGTCACACATCAG----------CTTTACCAGGTCCACTCTG-----------------GCCCCAACCCTGGACTCTCTATGTTTTGGGGACAGAAGGGAAGGCTGGCTCTGGCCCCCTGACATCTGCCTGTTCCATGCCTGCCAG Mus_musculus GGGCTTTATAACCAGAGGCACTAGCCCTTATCAAGTCCTGCTGCACAGCCCATCTGTGTTGGGTCACTGCAGGGAAGGGCATGAGCACCTCAAATAGAATATCCTCAGCCCTCTCCACCACAGGGGAGGTCACACATCAG----------CTTTACCAGGTCCACTCTGCTGAGTGACCCTCCCTGGTCGTACCCCTGAA--CTCTATGTTTTAGGTATAGTGGGGAGGGCTGGCTCTGACCCCCTGACATCTGCATGTTCCATGCCTACCAG Myocastor_coypus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Octodontomys_gliroides GCCCTGTGCTG-CGGGGCCCTGAGCCACTCTGGGGCACACGTGTCCCATCCACAAGTGGGAGGG-CCAGGACAGAGAGCCTCTCCCA-CACCCTTGGGACATCCTTCCTCCCAAGCCCATGGGGGGAAACCTCAGGCCTGGTCCAGCAGACTCTGCCAGGCCAGCCACACTGAGGGACCTTCAGTGACCACCGTGCCGGCCCCTTTTCCAGCCCTGCACCACAGGGGTGGCTGGTCCGGGCTCCCCAACACCTGCCCG-CCTGCACCCACCAG Proechimys_guairae GGCCTGTGCTGCCAGGGCCCTGAGCTCTCCCGAGGCCCATGTGCCCCATCCACAGATGGGAGGGCCCAGGACAGAGAGCCTTTCCCA-CACACTTGAGCCGTTCTTCCTCCAGTCTCCATGGGGGGAAGCCTCAGGCCTGGTCCCGCAGACTCTGCCAGGCCAGCCATACTGAGGGACCTTCAGTGACCACTGTGCCAGCCCCTTCTCCAGCCTTGTGCCAT-GGGGTGGCTGGCCTGGGCTCCCCAACACCTG-CCA-CCTGCACCCACCAG Rattus_norvegicus GGGCTTTGTAACCAGAGGCACTAG---TGAGTCAGTCCTGTTGCACAAGCCCACTGTGTGGGGTCACTGCAGGGGACAGCATGATCGCTTCAAGTAGAATAGCCTCAGCCTTCTCCACCACGGGGGGGGTCGCACATCAG----------CTTTACCAGGTCCACTCTGCTGAGTGACCCTCCCTGGCTGTACCCCTGAA--CTCTATGCTTTGGGTACAGTGGGGAGGGCTGGCTCTGGTTCCCTGACCTCTGCCTGTTCCATCCCTACCAG Sciurus_vulgaris --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19797] TITLE 'Mammal Trpv-intron-8'; LINK TAXA = TaxaForAnalysisStep12649; DIMENSIONS NCHAR=184; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 ] [ . . . . . . . . . . . . . . . . . . ] Apodemus_flavicollis GTGAGTGCATGGCCCCAGTGCCACCTGCCTGCCCAGTTCACCCCTTGCTCTCCCTCCTCCCCTGCCTCCAGTCTGGCTTCTATTCCCTCCTTCACTCTGCTTCCTTCCCTTCTG----CTCCCCG----TCCTCCCCCAACTGCTCCAGGCTCCATATTCCTCCCACTGTCTCTTCTCTTCCAG Atherurus_macrourus GTGAGTCCTTGGCGCCGATGCCACCTGCCCTGCCTGGCCTCCTCCTATTTTCCTTCTCTGCTCTTTCCCAACAAAGAGCCCATTGTCCCTGCTATTCTGCCTCCCTCTCTTCTAGTCCTTCCTCTCTCCCCTCCTCTCTCTCCCTCCTGGCCCCAGCCCTGTCACGCCTGC---CCCCTTCCAG Cavia_porcellus GTGAGTGCCTGGCCCTCCTGCAGCCG--CTGCCCAGCCCTCCTCCTCATCTCCTCCGAGTCATCCTGCCAGCAAAGAATCCATTGCCTCTCCTACTCTGCCT------------------------TCCTCTCCTCTCTTCTCCTCGGGGTTCCGCCGCTGTCACGCCCGCTCTCCTCTTCCAG Cynomys_ludovicianus GTGAGTGCTTGGTCCCCGCGCCACCAGCCCGCCCGGCCTCCCTCCTCCTCCAATTCCAGGTTCTCTTCCAACCAAGAGCCCATGTCCTCACATGCTCCGCCTCCCTCTCTTCTGTGCCTCCCTCTCTCCTGTCCTCTACCTTCTTCCCTGATCCACCTGCCACGGGCCCCCTCCCCTCTTTCAG Glis_glis ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Homo_sapiens GTAAGTGCCTGGCCCCCGTGCCCCCCACCCTGCCTGCCCTCCCCACGTTCTCCATCTCTGCTTTTTTCCAGGAAAGAGTCCTTTGTCTACCAGCCTCTGCCTCCCTCTCTTCTATCCCTTTCTCTCTCTCCTCCTCTCCTCTCCTGCTGGCCCCACCCCTTTCACGCCCCCTCCTGTCTTCCAG Hydrochoerus_hydrochaeris GTGAGTGCGTGGCCCCGATGCCAGCC-----CCTGCCCACCCTCCTGTTTTCCTTCTCTGCTCTTTCCCAATAAAGAATCCATTGCCTCTCCTATTCTGCCTCCTTCTCTGTT-----CTTTCCTCTCCTCTCCTCTGTTCTCCTCCTGGTTCCACCCCCATCACGCCTGCTGTTCTCTTCCAG Microtus_duodecimcostatus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Microtus_lusitanicus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mus_musculus GTGAGTGCTTGGCCCCAGTGCCACCTGCCTACCCAGTTCTCCTCTTGCTCTCCCTCTTCCCCTCCCTCCAGTCTGACTTCTATTCTCTCCTTCACTCTGCTTCCTTCCCTTTTGTCCCTTCTCCA----TCCTCCCCCAACTCCTCCTGACTTGATATTCCTCCCACCGTCTCTTCTGTTCCAG Myocastor_coypus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Octodontomys_gliroides GTGAGTGCATGGCCCCGATGCCACCCACCCTCCTGTCCCGCCTCCTCTTTTCCTTCTCTGTGCTGTCC-------------ATTGT--------CTCTGTCTCCCTCTCTTCTATTCTTCCCTCTCTCCTCGCCTCTGTCCTACTCCTGGTTACGCCCCTGTCACGCCTGCTGTCGTCTTCCAG Proechimys_guairae ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Rattus_norvegicus GTGAGTGCTTGGCCCCAGAGCCAGCTGCCTGCCAAGTTCCCTTCCTCCTCTCCCTCCCCTCCCCTCCCCAGTCTGGCTTCTATTCT-TCCCTCACTCTGTTCCCTTCCCTTCTGTCCCTTCCCCG----TCCTCCCCCAACTCCTCCTGGCTCCATATTCCTCTCACCGTCTCTTCTCTTCCAG Sciurus_vulgaris GTGAGTGCTTGGCCCCCGAGCCACCAG-CTGCCCGGCCTCCCTCCTGCTCCAATCCTGTGTTCTCTTCCAGCCAAGAGCCCAGGTCCTCCCGTGCTCTGCCTCCCTCTCCTCTGTCCCTTCCTCTCTCCTGCCCTCGACCTTCTTCCTGGCTCCACCTGTCACGGGCTCCCTCCCCTCCTTCAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19795] TITLE 'Mammal Rras-intron-4'; LINK TAXA = TaxaForAnalysisStep12649; DIMENSIONS NCHAR=421; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Apodemus_flavicollis GTTTGGGTGCCACCTCCCCTGATAACATTTGGCCCTACCAAGCGCTCTCGGGACCATCTCCTACTGGATCCCTGGTCTCTCTACTGTCACATCTTCCACTTAGATG---ACCCCCCAAGTGGAATAACCCATCGCTTAGCCACACTCCATCATTGAGGGATTCTAGGCAGGACCTCTAGAA------------------------CCTGGTCCCTACTTATAGCATATGCTCCCTGTC--------------------CCTGCCCCAGTTAACATCTTCATAATCTCCTGACATCTCACT--GAGGTAGCTTCGACCCTCCAGGACCCTCCTCTTGGGTCTTTCTAGAACTTTCTCTCCTGAGCCTGCTGAGCTT----GCGGCTTTCAGTGTCCCCTCTCCCTGACCTTTCCCTCTGTCT Atherurus_macrourus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cavia_porcellus GTATGGGTGCCTCCTTCTGATGTACCATCAGCACCCC----GCCTGCCCAGGAGCCCCCACTTCTGTGCCCTTTCTTCTGTGCTTGTCACTTCCTGGACATAAAGATGTGATTTCCACACAGAACT---CATCTTTTAGCCGAAT--CTTCTTTGGGGATTTCCAGCT-------------CTACACTTGGCCTCTGCCAAGACCAACA-TCCTTACTTGTAGCCTGCAGACTCTGTCTTAAATAAAAACCCTGGCTTCCATCCCAAACTAGCCTCCTGAGCTGGTCCTGATTCCTTATTTCTATGATGTTAACACTCCC--------------AGCATCCCATAGGAACTTTCCCTCTGGAGCTCCCAGGGCCTTTTGGCTTCCCTAGCTGGGGTCACTCCCTGACTCCTCTCCCCTGCA Cynomys_ludovicianus GTTTGGGTGCCGCCTTCCCTGGGGACAAATGGGTTTGGGAGGCTCCGTCCAGAGCATCCTCCTCTGCATCTCTGCTCCCTCCCATGCCACGCTTCTCATTTGGCTGTGTTATTCCCAAGTGGGACCATCCATTATTCACCAGAGGGCCCCCAGGACAGATGGATGGATGGGGCAAAGGGCACTGCCCCTTGCCCCCTCTTTTCCCACCTAGCTCTCCCCACAGTCTCTCCTTCCTCTACCACTGAAACACCCCCAACCCACACCCTAGTTAACGTCCATGAAACCTCCCGA{CT}TCCTCACTTGAATGGCACCTACTCCCTC---AACATCCACCCGGGATCTTTCTGCAACTTTCCCCTT-GAGCCACCAAAG-------GCTTCCCCAGCTGGGGTCACCCCCTGATTCGTGTCCATAACC Glis_glis ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Homo_sapiens GTTCGGGCACCCCTCTTTCTGGGGACATCTCAGTCTGGGAGGCTCCTTCCAGAGCATCCTCCTCTGCAGTGCTGCGACTGCCACTGTCACACAGCTCACCTAGATGGGTTACCCCCAAACTGGACCTTCCATCACCGAGCAGAGGGCCCTCAGGAGAGGCTGCTGGACGGAACAAAGGACACAGCTCTCTTTGCCCCTTCCTCGCATTCCTCCCTTCCAGCCAACCTCCCACCCTGCCTCTGCCGAACACCCTGACTTCCCTGCCTGGTTAGTGCCCACGAAGCCCCCCCATCCCTTACTTAGAAGACACCAAGCCCCTGCGGCATCTCCCTCCATAATCTCTCAGGAGCTCTTCCTCTTGAGTTCTCACAGCCTGTCTGTCTCTCTGGCTGCGGTCACCCCCTGACTCCCCCGTGTCCCC Hydrochoerus_hydrochaeris GTATGGGTGCCCCCCTTCCGAGGTACATCAGCACCCCGCCTGCCTGCCCAGGAGCCCCTACTCCTTTGTGTTCTCTTCTGCACTTGTCACTTCCTGGACACAAAGGTGTGATTTCCACATAGAACT---CATCTTTTAGCTGAAT--CTCCTTTGGGCATTTCCAGCC-------------CTATACTTGGCCTGTGCCAAGACCGACAATCCTCACTTGTAGCCTGCAGACTCTGTCTTAAACAAAAACCTTGGGTTCCATCCCAACCTAGTCTCCTGAGCTGGTCCTGATTCCTTATTCATA---TGTCAAAACTCCC--------------TGCATCCCACAGGAACTTTCCCTCTGGAGCTCCCAGTGCCTGTTGGCTTCCCTAGCTGGGGTCACTCCCTGATTCCTCTCCCCTGCC Microtus_duodecimcostatus GTTTGGGTGCCCCCTTCCTTGATGGCATTTGGACCTAGGAGGCTCTCTCGGGAACCTCTCCTTCCTGGTCCCTGGTCCCTTCACTGTCAGAACTTTCACTTCGACG---AACCCACAAATGGAACCATCTATCACTGAGCCACACCCCCTCACTAGGGGATTCTAGGCAGGGGTTCCATCACTGACCATCACATAATCCTTTGCTCCTGCACCCTAGCTGCAGTGTGTGTTCCCTCTCGTAGCTAAGCACCCT-----------------AACTTCTTCCCTGCCTCCTGAAGTCTCACTTAGATATAGTTTCAACTCTCCAGTATCCTCCTGTTGGGTCT----------TTCTTTCTTGAGCCTGCTCAGCCTT------GCTTCTGTCAGCCCCCCACCCCAACTCCTTGCTTTGTCC Microtus_lusitanicus GTTTGGGTGCCCCCTTCCTTGATGGCATTTGGACCTAGGAGGCTCTCTCGGGAACCTCTCCTTCCTGGTCCCTGGTCCCTTCACTGTCAGAACTTTCACTTCGACG---AACCCACAAATGGAACCATCTATCACTGAGCCACACCCCCTCACTAGGGGATTCTAGGCAGGGGTTCCATCACTGACCATCACATAATCCTTTGCTCCTGCACCCTAGCTGCAGTGTGTGTTCCCTCTC{CG}TAGCTAAGCACCCT-----------------AACTTCTTCCCTGCCTCCTGAAGTCTCACTTAGATATAGTTTCAACTCTCCAGTATCCTCCTGTTGGGTCT----------TTCTTTCTTGAGCCTGCTCAGCCTT------GCTTCTGTCAGCCCCCCACCCCAACTCCTTGCTTTGTCC Mus_musculus GTTTGAGTGCCCCCTCCCCTGGTCACATTTGGACCTAGGAAGCTCTCTCAGGACCATCTCCTACTGGATCCCTGGTCCCTCTATTGTCACAACTTTCACTTAGATG---ACCCCCCAAGAGGAATCGCCCATCACTGAGCCACACCCCATCACTGAGGGATTCTAACCAGGACCCCTAGCATGGCCCTTATACTAATCCGTTGATACTG-------------------GTTCCCTGTCCTGAACAAACACCCTTACTTCTTGCCCCAGTTAACACCTTCATAATCTCCTGACATCTCACT--GATATCACTTCAACCCTCCAGTAGCCTCCTCTGGGGTCTTTCTAGAACTTTCTATCTTGAGCCTGCTGCACCTTGCGGCGGCTTTCAGCATCTCCTCTCTCCGACGCCTCCCTTTGTCC Myocastor_coypus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Octodontomys_gliroides ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Proechimys_guairae ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Rattus_norvegicus GTTTGGGTGCCCCCTCCCCTGATCACATTAGGACCCAGGAAGCTCTCTCAGGACTGTCTCCTACTGGATCACTGGTCTCTCTACTGTCACAACTTTGACTTATATG---ACCCCCCAAGTAG-ATCACCCATTGCTGAGCCACACCCCATCACTGAGGGATTCTAGGCAGGACCCC-AGCACAGCCCTTCTAGTAATCCTTGGATACTGGTCCCTACTTGTAGTATATGTTCCCTCTCCTGAACAGACACCCTTACTTCTTGCCCTAGTTAACATCTTCATAATCTCCCGACATCTCGCG-----------TGTATCCTCCAGGATCCTCCTCTTGGGTCCTTCTAGAACTTTCTATCTTGAGGCTGATGAGCCTT---ACGGCTTTTGGCATCTCCTCTCTCTGACCCCTCCCTCTGACC Sciurus_vulgaris GTTTGGGTGCTGCCTTCCCTGG------------------GGCTCCGTCTGGAGCATCCTCCTTTGCATCCCTGCCCCCTCCAATGCCACACTCCTCACTTGGATGTGTTATCCCCAAGTTGGACCATCCCTCATTCACCAGAGGGCCCCCAC------------GATGGGGCAAGGGGCACTGCCCTGTCTTCCTGCTTTCCCACCTAGCCTCTCCTCACAGTCTTCCCGTCCTCTACCACTGAAACACCCCCAACCCACACCCTAGTTAACG--------AACCCCTGATTCCTCACTTGAATGGTATCAACTCCCTC---AGCATCCACCCAGGATCTTTCTGGAACTTTCCCCTT-GAGCCACCACAGCCTGTCTGCCTCCCCAGCTGGGGC--CCCCCTGATTCCTGTGTCTTCAC ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M19793] TITLE 'Mammal Ivd-intron-8'; LINK TAXA = TaxaForAnalysisStep12649; DIMENSIONS NCHAR=411; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Apodemus_flavicollis GTAAGTGTGCCTCCTGGAGGCCTGAGATCTCCAGCC{CT}--TTGTCAGGT-----------------TAGCAGCTCCGCCAGGCGCAGGAAAGGGACTTCATGA-------TCTGTCCTAGAGAA---------TCTCCTACGTTTAATTCTTCACCGGGAAGGGAGATGGTATTAGGTGAGAGAGAGGCGC--CTCTGTTTAGTTAATGTGCTTGTGAAACCAGAGGCCCAGCTCTGGCAGCTGGGCAGGC-TGGGCAGGCGGTGTTGTGGCTC-AGCAGGGAGGCTCCCTCTCAGGTTTAGCTCCTTACCCTCCCACCTCAGCTCTCAGGCCTGATCCCCTGAAATACCCATTCCCCACTTGACA-------------ACACAACTCCACAGGCCTCCTCCTTTCTGGCAG Atherurus_macrourus GTAAATGTGCCCTCTGGGGAGCTGAGGTTCTTCAGCCTCTTGGCAGGTGTGGCTGTCAGAAGGAGCAGCAACCTTCCCGGTCCAGAAAGATCCGCCTCTTGGCCGTGCT-----CTCTTGGAAGAAACCCCTTCTCTCACGTTGAATTCTTCACCCAGAAGGGAAACAGCATCAGATGACAGAGAGC-AACGGTTTGCTTGAG----GTGGATAAGAAAGGAGAGGCCAGGCCCCA-----GGGACCCTGCAGGGTGG--GGTGCCGTGACCCCAGGGCAGCAGGAGTTTCTCAGGTCCAGTTCCTTATCTTTAGAGCTTTCTTCCCAGGCCTTTC--TCTGGCATGCTGCCACCCCACCTGGCAGCAGTGGGATGATACACCTCCACAGCG---TTCTCCTTTCTGGCAG Cavia_porcellus GTAAGTGTGCCCTCTGGGGAGCCAAGGTCGTTAAGCCTCTTGGCAGGG--ATGTGTCTAAAGCAGCAGCAACCTTTCTGGGCCAAAAGGAGCCACTTCCTGGTCATGAC----ACTCATGGAGAGAAACCCTCTTCCTACGCTGCATTCTTCACACAGAAGGGAGATGTCATTATCTGACAGAGAGCCAAAGTTCTGCTTGAG----GTGGATGT-AAAAGAGAGGCCAGGC----------AGACCCTGCTGGGCTGCCGGCACTGTGCCCGCAGCGCAGCAGGTGTT-CTCAAGTCCACTTCCTTATCTTTAGAGCTTTCGTTCCAGGCCTTTG--TCTGGCATGCTGCCACCCTGCTTGGCATCTGTGGGATGGCAT-----------------CTCCTTTCTGGCAG Cynomys_ludovicianus GTAAGTATGGCTCCTGGGGATC-----TCTTTTAGCCTCGTGGCAGATGGAACTATCCTAAGCAGCAGCAGCCTTCCCGGGCCAAAGGGAGCTGATTCCTGGCCCCTGCAATCTCTCTTAGAGAAACTTACTCCTCCTGCATTCAGCTTTTCACACGGAAGGAAAATGTCATTAGGTGGATAGGAGGCGCAACTCTGCTTAGGTGGTGTGGATATGAAATGAGAGGCCCTGCTCTGGTGCCTGTCTACTGCTGTACAGTTGGTGCTGTAACTGCTGGATGACAAGAGCTTCTCAAGTCCAGATCCTTATCTTCCAATCTTT-CCTCAGGGCCTTTCCCTCTGTCATTCTGCCACTCCTCTTGGCA-GGGTGGGATGAGACACCTCCACAGTGTGTTTCTCCTTTCTGGCAG Glis_glis GTAAGTGTGGCCCCTGGGGACCTCAGCTCT---------TTGGCAGGTGGAGCCACCCTGAGCGGCCACAGCCTTCCCGGGCTAAAGAGAGCCACCTCCTGGCCCCTGTGCTCTCTTCTAGAGAAAGAACCGACTCCTATGTTTAATTCTTCACGCAGAAGGAAAATGTCCTAAGGTGACAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCAATCTGCCACCCCGCTTGGCAGTGGTGGGATGACACACCACCA-----GCATCTTTCTCTCTGGCAG Homo_sapiens GTAAGTGTGGCTTGAGGGAAGCTGGGCTCTGTCGGCCTCTCGGCAGGT-GACCCACCATGAGCAGCAGCAGCCTTCCCGGGCCAAAGGGAGCTGCCTCTTGGCCCTGCT--CTCTCCTGGGAGAAACCTCCTCTTCCCATGTTGAATTCTTCCCACAGTGGGGAAATATCATTAAGTAACAGAAAGGCGCAGGGTGGCTTACT-----CGGCTGTGAAACGACA-------CTGGGCTGTCACGCCCCTGCTGGCCAGTCAGTGCCGTAACTG-----TGGCAAGACTTTCTGAAG----------------CCTCCCTGGGATTCTGGCCTTCCCACGCTAGCATTTTGCCACCACACCCGGTGGTGGGATGA---GAGGTGCCCACGGGGCCTTTCTCCTTTCTGACAG Hydrochoerus_hydrochaeris GTAAGTGTGCCCTCTGGGGAGCTGAGGTCCTTCAGCCTCTTGGCAGGGGCAGGCATCAGAAGCAGCAGCAAACTTCCTGGGACAAAAGGAGCCACCTCCTGGTCATGGC----ACTCATGGAGAAAACCCCTTTTCTTACGCGGCATTCTTCACTCAGAAGGGAGATGTCACCATATGACAGAGAGCCAAAGTTCTGCTTGAG----GTGGATGT-AAAGGAGAGACCAGG-------CGGAGGGCCCTGCTGTGCCGCTGTCACTGTGAGCACAGGGCCGCAGGCGTTTCTCTGGTCCAGTTCCTTATCTGCAGAGCGTTTGTCCCAGGCCTCTG--TCTAGCATGCTGCCACCCCGCCTGGCA-CAGTGGGGTGTCAC-----------------TTCCTTTCTGGCAG Microtus_duodecimcostatus GTAAGTGTACCTCCTGGCAACCTGAGCTTGCCAGTC---TTGTTAGAT-----------------TAGCAGCCTCCCCGGAACAAAGGAAGCTACTTTGTGGTTTATCCTCTGTCCTTGTCAA------TCTCCTCCTGTATTTAATTCTTCATACAG-AGGGAAATGTCACTATGTGACAGAGAGGCGCAACTCTGCTTAGTCAGTGTGGTTGTGAAACAAGAAACGCAGCTCTGACACCTGCCTGCTGCTGGGCAGGCAATGCTGTCACTGCAGCAGGGAGT------------TTCAGTTCCTCCTCCTCCCACCTCAACCCTCAGGCCTAATCCTTTGACACCCTTTAACCCCGCTTGACA-------------TCACACCCCCATG---CTGTCCTCCTCCGGCAG Microtus_lusitanicus GTAAGTGTACCTCCTGGCAACCTGAGCTTGCCAGTC---TTGTTAGAT-----------------TAGCAGCCTCCCCGGAACAAAGGAAGCTACTTTGTGGTTTATCCTCTGTCCTTGTCAA------TCTCCTCCTGTATTTAATTCTTCACACAG-AGGGAAATGTCACTATGTGACAGAGAGGCGCAACTCTGCTTAGTCAGTGTGGTTGTGAAACAAGAAACGCAGCTCTGACACCTGCCTGCTGCTGGGCAGGCAATGCTGTCACTGCAGCAGGGAGT------------TTCAGTTCCTCCTCCTC{CT}CACCTCAACCCTCAGGCCTAATCCTTTGACACCCTTTAACCCCGCTTGACA-------------TCACACCCCCATG------CTGTCCTCCGGCAG Mus_musculus GTAAGTGTGCCTCCTGGGTACCTGAGATCTCCAGCCC--TCGTTAGGT-----------------TAGCAGCTTCACCAGACACAGGAAAGTTACT-------------TCTGTCCTCGAGAA------TCTCCTCCTACATTTAATTCTTTACCCAGAAGGGAAATGGTATGAGGTGACAGA----------GCTGTTTAGTCACTGTGGTTGTGAAACCAGAGGCCCAGCTCTGCCCGCTGCCCACTGCTGGGCAGGCGGTGCTGTGGCTG-AGCAAGGGG----TCTCTCAGGTTCAGTT---------CCCATCTCAACCCTCGGGCCCGATGCCCTGACATACCCACTCCCCACTTGACA-------------ACACAACTCCACAGGCTTCCTCCTTTCTGGCAG Myocastor_coypus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Octodontomys_gliroides GTAAGTGTGCCCT--GGGGAACTGAGGTCCTTCGGCCTCTTGGCAAAGGCAGGGGTTGATAGCAGCAGCAACCTTCCCGGGCCCAAGGGCGCCACCTTCTGGTTTTG------ACTCTTTGAGAAAATTCC{CT}GTTCCTACCTTGAATTCTTCACACACAAGGGAAATGCCATCATGTGACCCAGAGCCGCAGTTCTGCTTGAG----GTGGATGTGAAAGGCGAGGTGAGGTCCCAGCCATGGGGACTTGTTGGGTAGCC-CTGCTATGCCAGCAGGACAGCAGGAGTTTCTCAGGTCCATTTCCTTATCATCACAGCTTTTGTCCCAGGCCTTTG--CCTGGCATGCTGCCACCCCACCTGGCACCGGTGGGATGACACACCTCCACAGTG---TTCTTCTTTCTGGCAG Proechimys_guairae GTAAGTGTGCCCT---GGGAACTGAGGTCCTTCGGCCTCTTGACAAAGGCAGGCCTCAGAAGCAGCAGCAACCTTCCCGGGCCCAAGGGCACCACCTCCTAGCTGTG------ACTCTTGGAGAAAACCCCTGTCCCTACATTAAATTCTTCACACAAAAGGGAAATGCCATTGTGTGACAGCGAGCCTCAGCTCTGCTTGAG----G{AT}AGGTGTGAAAGGAGAGGTGAGGCCCTGACCCTGGGGACCTGCTGAG---------CTGTGA{CT}TCCAGGGCAGCAGGAGTTCCCCAGGTCCAGTTCTTTATC{AG}TCAGAGCTTTTGTCCCAGGCCTTTG--CCTGGCATGCTGCCACCCTGCTTGGCACCAGTGGGATGACACACCTCCATACTG------TTCTTTCTGGCAG Rattus_norvegicus GTAAGTGTGCCTCCTGGGTACCTGAGATCTGCAGCTC--TTGTTAAGT-----------------TAGCAGCTTTGCCAGGTGCAGGAAAGGTACTGCGTGGTCTATCCTCTGTCCTAGAGAA------TCGCCTCCTACATTTAATTCTTCACCCAGAAGGGAAATGGCATTAGGCGACAGAGAGGCGCCGCTCTGTTTAATCACTGTGGTTGTGAAACCAGAGGCGCAGCTCTGACAGCTGCCTGCTGCTGGGCAGGCAGTGCTGCGGCTG-AGCAGGGAG----TTTCTCAGGTTCAGTTCCTCACCC-TCCACCTCAGCCCTCAGACTTGATCCTCTGACATACTGTCTCCCCACTTAACA-------------ACACAACTCCATA-GCTTCCTCCTTTCTGGCAG Sciurus_vulgaris GTAAGT--GGCTCCTGGGGACCTGTGTTCTTTTAGCCTCGTGGCAGATGGATCTATCCT-AGCAGTAGCAGCCTTCCCGGACCAAAGGGAGCTGCTTCCTGGCCCCTGTGATTTCTCTTAGAGAAACTTACTCCTCCTGCATTTGTTTTTTCATACAAAAGGAAAATGTCATTAGGTGGATAGGAGGCGCAACTCTGCGTAGGTAGTGTGGATATGAAACAGGAGGCCCTGCTCGGATGCCT-CCTACTGCTCTCTAGTTGGTGCTGTAACTGCAGGGTAACAAGAGTTTCTCAAGTCCAGATCCATATCTTCCAAGCTTTCCCTTCGGGCCTTTCCCTCTGTCATTCTGCCACCC-ACTTAGCAGGAGTGGGATGGGACACCTCCACAGTGTCTTTCTCTTTCCTGGCAG ; END; [ The following blocks are output data for analysis step 12649 ] BEGIN TREES; TITLE Introns_Rodents; LINK TAXA = TaxaForAnalysisStep12649; TREE Bayesian = [&R] (((((Cynomys_ludovicianus:0.07228179051035899,Sciurus_vulgaris:0.07228179051035899):0.1664775418835177,Glis_glis:0.2387593323938767):0.04443488461941819,(Atherurus_macrourus:0.1632104022196664,((Hydrochoerus_hydrochaeris:0.0670917059741975,Cavia_porcellus:0.0670917059741975):0.06573849963691078,((Myocastor_coypus:0.045991371191924535,Proechimys_guairae:0.045991371191924535):0.030610004856238382,Octodontomys_gliroides:0.07660137604816292):0.056228829562945365):0.03038019660855812):0.11998381479362849):0.018984700811114974,(((Apodemus_flavicollis:0.06058907962788146,Mus_musculus:0.06058907962788146):0.007169415627679088,Rattus_norvegicus:0.06775849525556055):0.061520501335640077,(Microtus_lusitanicus:0.002777332796328802,Microtus_duodecimcostatus:0.002777332796328802):0.12650166379487182):0.17289992123320924):0.004293545727284465,Homo_sapiens:0.30647246355169433); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr68973] END;