#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 15, 2026; 10:48 GMT TreeBASE (cc) 1994-2008 Study reference: Prihatini I., Glen M., Wardlaw T., & Mohammed C. 2014. Multigene phylogenetic study of Cyclaneusma species. Forest Pathology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15159] [ The following blocks are input data for analysis step 12835 ] BEGIN TAXA; TITLE TaxaForAnalysisStep12835; DIMENSIONS NTAX=44; TAXLABELS Ceuthospora_sp_NZFS504 Cyclaneusma_minus_101y_4 Cyclaneusma_minus_102g_4 Cyclaneusma_minus_104_4 Cyclaneusma_minus_104_5 Cyclaneusma_minus_1062 Cyclaneusma_minus_107_7 Cyclaneusma_minus_300L_2c Cyclaneusma_minus_301H_3c Cyclaneusma_minus_303L_3c Cyclaneusma_minus_317B Cyclaneusma_minus_C348 Cyclaneusma_minus_DFR_1228_9 Cyclaneusma_minus_DFR1224_10 Cyclaneusma_minus_DFR1224_6 Cyclaneusma_minus_DFR1226_1 Cyclaneusma_minus_DFR1226_5 Cyclaneusma_minus_DFR1227_1 Cyclaneusma_minus_DFR1227_4 Cyclaneusma_minus_DFR1228_5 Cyclaneusma_minus_MC103y_5 Cyclaneusma_minus_MC303L_1 Cyclaneusma_minus_MC303L_6B Cyclaneusma_minus_N226 Cyclaneusma_minus_N231 Cyclaneusma_minus_O08_1 Cyclaneusma_minus_PN0362 Cyclaneusma_minus_PN0363 Cyclaneusma_minus_SN8_5 Cyclaneusma_minus_V1A2_2b Cyclaneusma_minus_V3B_3b Cyclaneusma_niveum_N214 Cyclaneusma_niveum_N215 Cyclaneusma_niveum_N218 Cyclaneusma_niveum_N219 Lophodermium_conigenum_NZFS781 Lophodermium_conigenum_NZFS790 Lophodermium_molitoris_NZFS789 Lophodermium_pinastri_O7_2C Lophodermium_pinastri_O7_3 Lophodermium_sp._NZFS796 Lophodermium_sp._NZFS804 Strasseria_geniculata_MC7964_2 Strasseria_geniculata_NZFS506 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M20106] TITLE Elongation_Factor_181213_matrix; LINK TAXA = TaxaForAnalysisStep12835; DIMENSIONS NCHAR=310; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=n GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Ceuthospora_sp_NZFS504 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATTATCGACTCCTn-ACCCCGCCA-CAACATTTTGTTTAGTGGGGCATGAGTTCGCTTCTGCATCAACAATCTTCT--nnnn-n--TGCACCCGACTGTCTTCGGTT--n-ATTATGCAACGCGC--ACAATGCGACTTGATA---CATCGGGC-GCCGAAGACCAACATCAACGTTGCT-GAACATGATGGCTAACTCGCATTACAGGAAGCCGCTGAGCTCGGTAAGGGTnnnnnnn Cyclaneusma_minus_101y_4 ACTGCGCTGGCTGGGCGCTGGTCAGCTTGGTGGCGGCCCCTCCAGCGAAGCACATTCTCG-CAGCTTTGGTGGGCTGTTCTGGTGTGCGCTTATCTGCGCGGGGCAAATTGCCCCGCCAAAGAACGCACGTTGGAAGAAAATTTGCGCTGGCCGCAGCCTGGCTCAGTGGTCTCGCTTGCTCCAC-TGCAACCCCGCCACACCGCCACATCAATGCGCCCAGCTCAGCTTGCCTCGACAGCAACCCGGTCAACACCTTGAGCCGATCATCGCGATCATTGTCGATGGCACCCACTGCTTC-AGCCTTCTT Cyclaneusma_minus_102g_4 ACTGCGCTGGCTGGGCGCTGGTCAGCTTGGTGGCGGCCCCTCCAGCGAAGCACATTCTCG-CAGCTTTGGTGGGCTGTTCTGGTGTGCGCTTATCTGCGCGGGGCAAATTGCCCCGCCAAAGAACGCACGTTGGAAGAAAATTTGCGCTGGCCGCAGCCTGGCTCAGTGGTCTCGCTTGCTCCAC-TGCAACCCCGCCACACCGCCACATCAATGCGCCCAGCTCAGCTTGCCTCGACAGCAACCCGGTCAACACCTTGAGCCGATCATCGCGATCATTGTCGATGGCACCCACTGCTTC-AGCCTTCTT Cyclaneusma_minus_104_4 ACTGCGCTGGCTGGGCGCTGGTCAGCTTGGTGGCGGCCCCTCCAGCGAAGCACATTCTCG-CAGCTTTGGTGGGCTGTTCTGGTGTGCGCTTATCTGCGCGGGGCAAATTGCCCCGCCAAAGAACGCACGTTGGAAGAAAATTTGCGCTGGCCGCAGCCTGGCTCAGTGGTCTCGCTTGCTCCAC-TGCAACCCCGCCACACCGCCACATCAATGCGCCCAGCTCAGCTTGCCTCGACAGCAACCCGGTCAACACCTTGAGCCGATCATCGCGATCATTGTCGATGGCACCCACTGCTTC-AGCCTTCTT Cyclaneusma_minus_104_5 ACTGCGCTGGCTGGGCGCTGGTCAGCTTGGTGGCGGCCCCTCCAGCGAAGCACATTCTCG-CAGCTTTGGTGGGCTGTTCTGGTGTGCGCTTATCTGCGCGGGGCAAATTGCCCCGCCAAAGAACGCACGTTGGAAGAAAATTTGCGCTGGCCGCAGCCTGGCTCAGTGGTCTCGCTTGCTCCAC-TGCAACCCCGCCACACCGCCACATCAATGCGCCCAGCTCAGCTTGCCTCGACAGCAACCCGGTCAACACCTTGAGCCGATCATCGCGATCATTGTCGATGGCACCCACTGCTTC-AGCCTTCTT Cyclaneusma_minus_1062 ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGGGCAACACCATGCGCTGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AATCTGCTG Cyclaneusma_minus_107_7 ACTGCGCTGGCTGGGCGCTGGTCAGCTTGGTGGCGGCCCCTCCAGCGAAGCACATTCTCG-CAGCTTTGGTGGGCTGTTCTGGTGTGCGCTTATCTGCGCGGGGCAAATTGCCCCGCCAAAGAACGCACGTTGGAAGAAAATTTGCGCTGGCCGCAGCCTGGCTCAGTGGTCTCGCTTGCTCCAC-TGCAACCCCGCCACACCGCCACATCAATGCGCCCAGCTCAGCTTGCCTCGACAGCAACCCGGTCAACACCTTGAGCCGATCATCGCGATCATTGTCGATGGCACCCACTGCTTC-AGCCTTCTT Cyclaneusma_minus_300L_2c ACTGCGCTGGCTGGGCGCTGGTCAGCTTGGTGGCGGCCCCTCCAGCGAAGCACATTCTCG-CAGCTTTGGTGGGCTGTTCTGGTGTGCGCTTATCTGCGCGGGGCAAATTGCCCCGCCAAAGAACGCACGTTGGAAGAAAATTTGCGCTGGCCGCAGCCTGGCTCAGTGGTCTCGCTTGCTCCAC-TGCAACCCCGCCACACCGCCACATCAATGCGCCCAGCTCAGCTTGCCTCGACAGCAACCCGGTCAACACCTTGAGCCGATCATCGCGATCATTGTCGATGGCACCCACTGCTTC-AGCCTTCTT Cyclaneusma_minus_301H_3c ACTGCGCTGGCTGGGCGCTGGTCAGCTTGGTGGCGGCCCCTCCAGCGAAGCACATTCTCG-CAGCTTTGGTGGGCTGTTCTGGTGTGCGCTTATCTGCGCGGGGCAAATTGCCCCGCCAAAGAACGCACGTTGGAAGAAAATTTGCGCTGGCCGCAGCCTGGCTCAGTGGTCTCGCTTGCTCCAC-TGCAACCCCGCCACACCGCCACATCAATGCGCCCAGCTCAGCTTGCCTCGACAGCAACCCGGTCAACACCTTGAGCCGATCATCGCGATCATTGTCGATGGCACCCACTGCTTC-AGCCTTCTT Cyclaneusma_minus_303L_3c ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGGGCAACACCATGCGCTGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AAT-nnnnn Cyclaneusma_minus_317B ACTGCGCTGGCTGGGCGCTGGTCAGCTTGGTGGCGGCCCCTCCAGCGAAGCACATTCTCG-CAGCTTTGGTGGGCTGTTCTGGTGTGCGCTTATCTGCGCGGGGCAAATTGCCCCGCCAAAGAACGCACGTTGGAAGAAAATTTGCGCTGGCCGCAGCCTGGCTCAGTGGTCTCGCTTGCTCCAC-TGCAACCCCGCCACACCGCCACATCAATGCGCCCAGCTCAGCTTGCCTCGACAGCAACCCGGTCAACACCTTGAGCCGATCATCGCGATCATTGTCGATGGCACCCACTGCTTC-AGCCTTCTT Cyclaneusma_minus_C348 ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGGGCAACACCATGCGCTGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AAT-nnnnn Cyclaneusma_minus_DFR_1228_9 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGGGCAACACCATGCGCTGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AATCTGCTG Cyclaneusma_minus_DFR1224_10 ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGAGCAACACCATGCGCCGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AATCTGCTG Cyclaneusma_minus_DFR1224_6 nnnnnnnnnnnnnnnnnnnGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGAGCAACACCATGCGCCGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AATCTGCTG Cyclaneusma_minus_DFR1226_1 ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGAGCAACACCATGCGCCGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AATCTGCTG Cyclaneusma_minus_DFR1226_5 ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGGGCAACACCATGCGCTGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AATCTGCTG Cyclaneusma_minus_DFR1227_1 ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGGGCAACACCATGCGCTGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AATCTGCTG Cyclaneusma_minus_DFR1227_4 ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGGGCAACACCATGCGCTGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AATCTGCTG Cyclaneusma_minus_DFR1228_5 ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGGGCAACACCATGCGCTGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AATCTGCTG Cyclaneusma_minus_MC103y_5 ACTGCGCTGGCTGGGCGCTGGTCAGCTTGGTGGCGGCCCCTCCAGCGAAGCACATTCTCG-CAGCTTTGGTGGGCTGTTCTGGTGTGCGCTTATCTGCGCGGGGCAAATTGCCCCGCCAAAGAACGCACGTTGGAAGAAAATTTGCGCTGGCCGCAGCCTGGCTCAGTGGTCTCGCTTGCTCCAC-TGCAACCCCGCCACACCGCCACATCAATGCGCCCAGCTCAGCTTGCCTCGACAGCAACCCGGTCAACACCTTGAGCCGATCATCGCGATCATTGTCGATGGCACCCACTGCTTC-AGCCTTCTT Cyclaneusma_minus_MC303L_1 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGGGCAACACCATGCGCTGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AATCTGCTG Cyclaneusma_minus_MC303L_6B ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGGGCAACACCATGCGCTGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AATCTGCTG Cyclaneusma_minus_N226 ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGGGCAACACCATGCGCTGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AAT-nnnnn Cyclaneusma_minus_N231 ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGGGCAACACCATGCGCTGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AAT-nnnnn Cyclaneusma_minus_O08_1 ACTGCGCTGGCTGGGCGCTGGTCAGCTTGGTGGCGGCCCCTCCAGCGAAGCACATTCTCG-CAGCTTTGGTGGGCTGTTCTGGTGTGCGCTTATCTGCGCGGGGCAAATTGCCCCGCCAAAGAACGCACGTTGGAAGAAAATTTGCGCTGGCCGCAGCCTGGCTCAGTGGTCTCGCTTGCTCCAC-TGCAACCCCGCCACACCGCCACATCAATGCGCCCAGCTCAGCTTGCCTCGACAGCAACCCGGTCAACACCTTGAGCCGATCATCGCGATCATTGTCGATGGCACCCACTGCTTC-AGCCTTCTT Cyclaneusma_minus_PN0362 ACTGCGCTGGCTGGGCGCTGGTCAGCTTGGTGGCGGCCCCTCCAGCGAAGCACATTCTCG-CAGCTTTGGTGGGCTGTTCTGGTGTGCGCTTATCTGCGCGGGGCAAATTGCCCCGCCAAAGAACGCACGTTGGAAGAAAATTTGCGCTGGCCGCAGCCTGGCTCAGTGGTCTCGCTTGCTCCAC-TGCAACCCCGCCACACCGCCACATCAATGCGCCCAGCTCAGCTTGCCTCGACAGCAACCCGGTCAACACCTTGAGCCGATCATCGCGATCATTGTCGATGGCACCCACTGCTTC-AGCCTTCTT Cyclaneusma_minus_PN0363 ACTGCGCTGGCTGGGCGCTGGTCAGCTTGGTGGCGGCCCCTCCAGCGAAGCACATTCTCG-CAGCTTTGGTGGGCTGTTCTGGTGTGCGCTTATCTGCGCGGGGCAAATTGCCCCGCCAAAGAACGCACGTTGGAAGAAAATTTGCGCTGGCCGCAGCCTGGCTCAGTGGTCTCGCTTGCTCCAC-TGCAACCCCGCCACACCGCCACATCAATGCGCCCAGCTCAGCTTGCCTCGACAGCAACCCGGTCAACACCTTGAGCCGATCATCGCGATCATTGTCGATGGCACCCACTGCTTC-AGCCTTCTT Cyclaneusma_minus_SN8_5 ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGGGCAACACCATGCGCTGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AATAnnnnn Cyclaneusma_minus_V1A2_2b ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGGGCAACACCATGCGCTGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AATCTGCTG Cyclaneusma_minus_V3B_3b ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAGCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACGCACGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GTGTGCCTCGATAACACCCCGAGCAACACCATGCGCCGATCTTCACGATTGCCATC-A-CGCTTCTGCTGCTGC-AATCTGCTG Cyclaneusma_niveum_N214 ACTGCTCGGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CATCAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACACACGTTGGAAGAAAATTT--nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GCGTGCCTCGACAACACCCCGGGCAACACCATGCGCCGATCTTCACAATTGCCATC-AACGCTTCTGCTGCTGCCAATCTGCTG Cyclaneusma_niveum_N215 ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCT-n-CAACAAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACACATGTTGGAAGAAAATTTG-nn-nnnn-CAGCCTGGCTCAGTGGGCTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCATTGCGCCCATGGC-GCGTGCCTCGACAACACCCCGGGCAACACCATGCGCCGATCCTCACGATTGCCATC-AACGCTTCTGTTGCTGC-AATCTGCTG Cyclaneusma_niveum_N218 ACTGCTCAGACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAG-AAAGCGCATTTTTGGGAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGGGTGCGGGGCACn-TGCCCCGCCAAACAACACACGTTGGAAGAAAATTT--nn-nnnn-CAGCCGGGGTGGGTGGACTCGCTTGCTTCACATGTAACCCCCCCACACCGCCACATCAATGCGCCCATGGG-GCGTGCCTCGACAACACCCCGGGCAACACCATGCGCCGATCTTCACAGTTGCCATC-AACGCTTCTACTGCTGCCAATCTGCTG Cyclaneusma_niveum_N219 ACTGCTCAAACTGn-CGCTGGGCTGCCGGGTGGCAAGCTCT-CAG-AAAGCGCATTTTTGGCAGCTTTGGTGGGCTGCGCACT-n-nn-CTTCTGTGTGCGGGGCACn-TGCCCCGCCAAACAACACACGTTGGAAGAAAATTT--nn-nnnn-CAGCCTGGCTGGGTGGACTCGCTTGCTTCACATGCAACCCCGCCACACCGCCACATCAATGCGCCCATGGC-GCGTGCCTCGACAACACCCCGGGCAACACCATGCGCCGATCTTCACAATTGCCATC-AACGCTTCTGCTGCTGCCAGTCTGCTG Lophodermium_conigenum_NZFS781 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTT-n-nnnnn-n-TCCCCTCTn-CAGCG-CTTA-nTCGCAGGTTTTnnn-TTGCCCCTCCATCAATTTTTTGTTG-nnnn-TGGTGGGGCAAAGGGCTTGCTGTC--TCACATTTCTGCGCACCAACAATTTT-TGCGAC----CGGCAACC--CACACAGCCATCAGTTCCTTATCTACAC-ACGATGCTAACTATGTTTTACAGGAAGCCGCCGAGTTGGGTAAAGGTTCCTTCA Lophodermium_conigenum_NZFS790 nnnnnnnnnnnnnnnnnnnnnnnnnnGAGAAGGTAAGATCTCAACTTTTCCTATAATTCTnnnnn-TCTTCACTT-n-nnnnn-n-TCCCCTCTn-CAGCG-CTTA-nTCGCAGGTTTTnnn-TTGCCCCTCCATCAATTTTTTGTTG-nnnn-TGGTGGGGCAAAGGGCTTGCTGTC--TCACATTTCTGCGCACCAACAATTTT-TGCGAC----CGGCAACC--CACACAACCATCAGTTCCTTATCTACAC-ACGATGCTAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Lophodermium_molitoris_NZFS789 nnnnnnnnnnnnnnnnnnnnnnnnnnGAGAAGGTAAGATTTCACATCTTTTGCTACATCTACAAATTCCTCCTTCAC-CTTTTTn-TCCCCTC-n-CAGCG-CTTA-nTCGCCA-nTTTnnn-TTGCCCCTCCATTGAAAATCTTTTC-nnnn-TGGTGGGGCAAAAGGGCATTTGTC--TCGCTT-nnTGCGCACCAACAACAATCCGCGACAGCACATTTTCA-ACACACACAATTTACTTCACTCCCT-TACATCATCCTTTTCTACGACTTCAAAAAATCTnnnnnnnnnnnnnnnnnnnnnnnnn Lophodermium_pinastri_O7_2C nnnnnnnnnnnnnnnnnnnnnnnnnnnAGAAGGTAAGATA-CTACAATATCTCTCATTTTnnnnn-TGTTCACTTGG-ACAACTn-TCCCCTC-n-CATCT-CTTA-nTCGCAA-n-nTnnn-TTGCCCCTCCTTCAAAAAATTTTTGGnnnn-TGGTGGGGCAAAGGGCTTT-TGTC--TCGCTT-nn-GCGCAC-AACAATTCCCTGCCAAT-CACAGCGACC-ACACACTGCCACCACTATCATTTTTATACTACAACAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Lophodermium_pinastri_O7_3 nnnnnnnnnnnnnnnnnnnnnnnnnnGAGAAGGTAAGATA-CTACAATATCTCTCATTTTnnnnn-TGTTCACTTGA-ACAACTn-TCCCCTC-n-CATCT-CTTA-nTCGCAA-n-nTnnn-TTGCCCCTCCTTCAAAAAATTTTTGGnnnn-TGGTGGGGCAAAGGGCTTT-TGTC--TCGCTT-nn-GCGCAC-AACAATTCCCTGCCAAT-CACAGCGACC-ACACACTGCCACCACTATCATTTTTATACTACAACAATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Lophodermium_sp._NZFS796 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAGAAGGTAAGATACCATCATTTCTACACTCTT-TACCCTn-ACCCCTCTTCCAACTTCTTA-nTCGCGA-n-n-nnn-nn-CCCCACCATCAAAATTTTGTTG-nnnn-TGGGCTGGGTCAGGGTTTTGTGTT--TCTCGCTTTGCCGGTC--GCAAAGACGCACCACG--ACATTTTCA-ACACAnnnnnnnnnnnnnnnnnnnn--AC-ACAATGCTAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Lophodermium_sp._NZFS804 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCTn-ACCCCTCTTCCAACTTCTTA-nTCGCGA-n-n-nnn-nn-CCCCACCATCAAAATTTTGTTG-nnnn-TGGGCTGGGTCAGGGTTTTGTGTT--TCTCGCTTTGCCGGTC--GCAAAGACGCAC-ACG--ACATTTTCA-ACACAnnnnnnnnnnnnnnnnnnnn--AC-ACAATGCTAACAAAACATTATAGGAAGCCGCCGAGTTGGGTAAGGGTTCCTTCA Strasseria_geniculata_MC7964_2 nnnnnnnnnnnnnnnnnnnnnnnGAGAAGGTAAGAATCATTTTTTTTTCTTTCGCAATTTTTCATATTTGCGTTATCGTCTTTTn-GCCCCTCTA-CTACGCTTG--nTGGTGGGGTATAGACTCGCTTCTTCGTCAC-AATTTTTTT-nnnn-n-TTGCGCCCGTG-GTTTTCGGTTG-TCAATAAGCAACGTGT--GCAAGACAATTTGATG---CCTCGGGC--C-AAGAAATATTATCATCATAACTTGATCATGATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Strasseria_geniculata_NZFS506 nnnnnnnnnnnnnnnnnnnnnnnGAGAAGGTAAGAATCATTTTTTTTTCTTTCGCAATTTTTCATATTTGCGTTATCGTCTTTTn-GCCCCTCTA-CTACGCTTG--nTGGTGGGGTATAGACTCGCTTCTTCGTCACTAATTTTTTT-nnnn-n-TTGCGCCCGTG-GTTTTCGGTTG-TCAATAAGCAACGTGT--GCAAGACAATTTGATG---CCTCGGGC--CCAAGAAATATTATCATCATAACTTGATCATGATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn ; END; [ The following blocks are output data for analysis step 12835 ] BEGIN TREES; TITLE Cyclaneusma_Elongation_Factor_181213; LINK TAXA = TaxaForAnalysisStep12835; TREE Imported_tree_0 = [&R] (((Lophodermium_sp._NZFS796:6.0E-5,Lophodermium_sp._NZFS804:6.0E-5):0.31004,((Ceuthospora_sp_NZFS504:0.10692,(Strasseria_geniculata_MC7964_2:6.0E-5,Strasseria_geniculata_NZFS506:6.0E-5):0.30023):0.45957,((Lophodermium_pinastri_O7_2C:0.0012,Lophodermium_pinastri_O7_3:0.00371):0.17191,(Lophodermium_molitoris_NZFS789:0.38267,(Lophodermium_conigenum_NZFS781:6.0E-5,Lophodermium_conigenum_NZFS790:0.00588):0.08263):0.02791):0.1231):6.0E-5):0.96027,(Cyclaneusma_niveum_N219:0.00643,(Cyclaneusma_niveum_N218:0.03259,(Cyclaneusma_niveum_N214:0.00702,((Cyclaneusma_niveum_N215:0.01966,((Cyclaneusma_minus_O08_1:6.0E-5,(Cyclaneusma_minus_PN0362:6.0E-5,(Cyclaneusma_minus_PN0363:6.0E-5,(Cyclaneusma_minus_301H_3c:6.0E-5,(Cyclaneusma_minus_101y_4:6.0E-5,Cyclaneusma_minus_317B:6.0E-5):6.0E-5):6.0E-5):6.0E-5):6.0E-5):6.0E-5,((Cyclaneusma_minus_104_5:6.0E-5,Cyclaneusma_minus_MC103y_5:6.0E-5):6.0E-5,(Cyclaneusma_minus_104_4:6.0E-5,(Cyclaneusma_minus_102g_4:6.0E-5,(Cyclaneusma_minus_107_7:6.0E-5,Cyclaneusma_minus_300L_2c:6.0E-5):6.0E-5):6.0E-5):6.0E-5):6.0E-5):0.24031):0.00925,((Cyclaneusma_minus_DFR1224_6:6.0E-5,(Cyclaneusma_minus_V3B_3b:6.0E-5,(Cyclaneusma_minus_DFR1224_10:6.0E-5,Cyclaneusma_minus_DFR1226_1:6.0E-5):6.0E-5):6.0E-5):0.00352,((Cyclaneusma_minus_N231:6.0E-5,(Cyclaneusma_minus_N226:6.0E-5,(Cyclaneusma_minus_C348:6.0E-5,(Cyclaneusma_minus_303L_3c:6.0E-5,Cyclaneusma_minus_SN8_5:0.00177):6.0E-5):6.0E-5):6.0E-5):0.00162,((Cyclaneusma_minus_DFR_1228_9:6.0E-5,Cyclaneusma_minus_MC303L_1:6.0E-5):6.0E-5,(Cyclaneusma_minus_V1A2_2b:6.0E-5,((Cyclaneusma_minus_DFR1227_4:6.0E-5,Cyclaneusma_minus_MC303L_6B:6.0E-5):6.0E-5,(Cyclaneusma_minus_DFR1228_5:6.0E-5,(Cyclaneusma_minus_1062:6.0E-5,(Cyclaneusma_minus_DFR1226_5:6.0E-5,Cyclaneusma_minus_DFR1227_1:6.0E-5):6.0E-5):6.0E-5):6.0E-5):6.0E-5):6.0E-5):6.0E-5):0.00352):0.01067):0.00353):6.0E-5):5.7E-4):0.96027); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr69419] END;