#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 18, 2025; 7:34 GMT TreeBASE (cc) 1994-2008 Study reference: Kenaley S.C., Smart L.B., & Hudler G.W. 2014. Genetic evidence for three discrete taxa of Melampsora (Pucciniales) affecting willows (Salix spp.) in New York State. Fungal Biology, 118(8): 704-720. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15162] [ The following blocks are input data for analysis step 12842 ] BEGIN TAXA; TITLE TaxaForAnalysisStep12842; DIMENSIONS NTAX=36; TAXLABELS Chrysomyxa_weirii_GU049472 'Melampsora abietis-populi AB116870' Melampsora_amygdalinae_AY444776 Melampsora_caprearum_AY444779 Melampsora_coleosporioides_AY652948 Melampsora_epiphylla_AY652947 Melampsora_epitea_AY471631 Melampsora_epitea_AY471639 Melampsora_epitea_AY471643 Melampsora_epitea_GQ479249 Melampsora_epitea_Mel_A Melampsora_epitea_Mel_H Melampsora_epitea_Mel_J Melampsora_epitea_Mel_R Melampsora_epitea_Mel_S Melampsora_iranica_FJ386432 'Melampsora larici-epitea JF825970' 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' 'Melampsora larici-epitea f.sp. larici-epitea AY444778' Melampsora_laricis_AB116863 'Melampsora laricis-pentandrae AY444771' Melampsora_medusae_AY375274 Melampsora_medusae_tremuloidis_EU808031 Melampsora_medusae_tremuloidis_EU808044 'Melampsora medusae-populina AY375282' Melampsora_pinitorqua_EU808035 Melampsora_populnea_EU808037 'Melampsora ribesii-purpureae AY444770' 'Melampsora salicis-albae FJ455127' Melampsora_spp._AB116868 Melampsora_spp._JF825971 Melampsora_spp._JN646134 Melampsora_spp._JN646135 Melampsora_spp._JN646171 Melampsora_spp._JN646232 Melampsora_spp._JN646237 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M20153] TITLE 'Melampsora, Fig 4 Final ITS Alignment'; LINK TAXA = TaxaForAnalysisStep12842; DIMENSIONS NCHAR=884; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Chrysomyxa_weirii_GU049472 -------------------------------------------------GTTATCGAGTGCACTTCAATGTGACTCTTTATCTTTACCATCACCC-CCTCAAACCCAAAGGTATAGTGTG----TGCGCAAGCATAGCATTATACCAGTACGCAT-GCAGAGTT-GACTTTGTATTGCATTACCCATAAGTTACCCCCTTTACCTTACACTTAAAAAGTTTTAAGAATGAATCAATACCCCCTAACAATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACGCAGTGAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTG-ATTCCAAAAGGTACACCTGTTTGAATGTCACGAAACCCCCCTCATGGCTAACGCTTTCTCAAAGCGTTAGTGATGGATTCTGAGTGTTGCTGTTTCTCAACAGCTCACTTTAAATACATGAGCACTTTTTGACA-GTCCTGCATGGGTTCAAAAGACGTACTTGATGTTATATTGATATC--TCATTAGGATGGTCTTGGGTTGTAA-GACTCTCTGCCTGTGTCATGACTTGATGAATAGCTTCGAACCTGACATATATCAAGCTGATGTGACTCTCACAAAGCTCCATGTGTGTGTGGGCATCATATGACCACTCATTGTTTTTGGGCAGGTACATCATCAGCTTGTGTCATGACTGTTTAGACTTCAAATCAGGTGGGATTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACCATGATTCCCTTAGTAACGGCGAGTGAACTGGGAGAAGCC------------------------------------ 'Melampsora abietis-populi AB116870' AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATA-CCATTTA---CCCCCAACCCAGAGGTGCATTGTGGCCTGTAAAAAGGTTAGCAGTGTATCAGTACGTATTACAAAGTCTGACTTTGTCTTACATTACCCATAAGTTACCCCCCAT---TTACACTTATACAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTGAATGTCACAAAACTCCCCTCGGCCTTAGCTCTTTCTAAAAGCGTTAGGGACGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTCTAATATTAGTTCAAAAGACGGACTTGATGTTGTATTTATATT--TCATTGAGAAGGTCTTTGGTCGTATCGACTATCCGCTAATAGGACGACTTGATGAATAGCTTC----CTAAC---------------------CCTA------------------------TAAATT--------------------------------------------AACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ Melampsora_amygdalinae_AY444776 ----------------------------------AAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATAACTATTAC---CACCCAACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAGAGGTACACCTGTTTGAATGTCATGAAACTCCCCTCGGCTCTAAGACTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTGAAGATTAGTTCGAAAGACGTACTTGATGTTGTATTTATATT--TCGTCGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATCCGAAGACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTAAAT--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ Melampsora_caprearum_AY444779 ----------------------------------AAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TGGAATAACTATTAC---CCCCCAACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCTGAAAGGTACACCTGTTTGAATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTATTTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATACGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTAAAT--------------------------------------------TAACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ Melampsora_coleosporioides_AY652948 -----------------------------------AGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATAACTATTAC---CACCCAACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-CTATATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAGAGGTACACCTGTTTGAATGTCATGAAACTCCCCTCGGCTCTAAGACTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTT?AAGATTAGTTCAAAAGACGTACTTGATGTTGTAGCAATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATCCGAAGACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTAAAT--------------------------------------------TAACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ Melampsora_epiphylla_AY652947 -----------------------------------AGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATAACTATTAC---CCCCCAACCCAGAGGTGCATTGTGGCCTTTAACAAGGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTATTTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATCCGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTAAAT--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ Melampsora_epitea_AY471631 AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATCACTATTAC---CACCCAACCCAGAGGTGCATTGTGGCCTTTAT---GGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCATGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTATTTATATT--TCATTGAGGCAGTCTTTGGTCTTTATGACTATCCGCTAATACGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTAAAT--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCAAATTTGTAATCTGGCACTTTTT-ACAAGTGTCCG Melampsora_epitea_AY471639 AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-T-CTGAGCGCACTTTAATGTGACTCT-TTGTATC-CCATTTA---CCCCCAACCCAGAGGTGCATTGTGGCCGGTCAAACGGTTAGCAGTGTATCAGTACGTATGACAAAGTCTGACTTTGGCTTACATTACCCATAAGTTACCCCC-AT---TTACACTTATACAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCACAAAACTCCCCTCGGCCTTGACTCTTTCTAAAAGCGTCAGGGACGGATTCTGAGTGTTGGCTTTA------GCCTCGCTTTAAATAGATCAGCCCTTTTGAGTGAGTTTACTATTAGTTCAAAAGACGGACTCGATGTTGTATTTATATG--TCATTGAGGAGCTCTTTGGTCGTACCGACTATCCGCTAATGGGACCACTTGCCAAATAGCTTC----CTAAA---------------------CTT--------------------------CAAAT--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACACGGGAAAGCCCAA-TTTGTAATCTGGCATCTTTTCACAGGTGTCCG Melampsora_epitea_AY471643 AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGTGTGCTTTATTGCGACTCT-TTGTATA-TCATTAC---CCCCCAACCCAGAGGTGCATTGTGGCTTTGCAAAAAGTTAGCAGTGTATCAGTACGTATTACAAAGTCTGACTTTGTTTTACATTACATATAAGTTACCCCCTAT---TTACACTTAAGAAGTTTTAAGAATG-----ATACCCTATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTGAATGTCACGAAACCCCCCTCGGCTTTAACACTTTCTAAAAGGGTTATTGACGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGCACTTTTGGACG-GTTACATGTTAGTTCAAAAGACGTACTTGATGTCGTATTTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATGTGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCCAA-----------------------TCGAAT--------------------------------------------TTACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGGAAAAGCCCA-TTTGTAATCTGGCATCTTTT-ACAGATGTCCG Melampsora_epitea_GQ479249 ----------------------------------------CATTAATACA-TGTTGAGCGCACTTTAATG{CT}GACTCT-TTGTATCACTATTAC---CACCCAACCCAGAGGTGC?TTGTGGCCTTTAT---GGTTAGCAGTGTATCA?T?C?TATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCT{AT}GGCTCTCAC{AG}TCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCATGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTATTTATATT--TCATTGAGGCAGTCTTTGGTCTTTATGACTATCCGCTAATACGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTAAAT--------------------------------------------TACC--TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCAAATTTGTAATCTGGCACTTTTT-ACAAGTGTCCG Melampsora_epitea_Mel_A AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATCACTATTAC---CACCCAACCCAGAGGTGCATTGTGGCCTTTAT---GGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCATGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTATTTATATT--TCATTGAGGCAGTCTTTGGTCTTTATGACTATCCGCTAATACGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTAAAT--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCAAATTTGTAATCTGGCACTTTTT-ACAAGTGTCCG Melampsora_epitea_Mel_H AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGTGTGCTTTATTGCGACTCT-TTGTATA-TCATTAC---CCCCCAACCCAGAGGTGCATTGTGGCTTTGCAAAAAGTTAGCAGTGTATCAGTACGTATTACAAAGTCTGACTTTGTTTTACATTACATATAAGTTACCCCCTAT---TTACACTTAAGAAGTTTTAAGAATG-----ATACCCTATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTGAATGTCACGAAACCCCCCTCGGCTTTAACACTTTCTAAAAGGGTTATTGACGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGCACTTTTGGACG-GTTCCATGTTAGTTCAAAAGACGTACTTGATGTCGTATTTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATGTGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCCAA-----------------------TTGAAT--------------------------------------------TTACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCAAATTTGTAATCTGGCATCTTTT-ACAGATGTCCG Melampsora_epitea_Mel_J AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGTGTGCTTTATTGCGACTCT-TTGTATA-CTATTAC---CCCCCAACCCAGAGGTGCATTGTGGCTTTGCAAAAAGTTAGCAGTGTATCAGTACGTATTACAAAGTCTGACTTTGTCTTACATTACATATAAGTTACCCCCTAT---TTACACTTAAGAAGTTTTAAGAATG-----ATACCCTATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTGAATGTCACGAAACCCCCCTCGGCTTTAACACTTTCTAAAAGGGTTATTGACGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGCACTTTTGGACG-GTTCCATGTTAGTTCAAAAGACGTACTTGATGTCGTATTTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATGTGACGACTTGAAGAATAGCTTC----CTAAC---------------------CCCAA-----------------------TTGAAT--------------------------------------------TTACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCAAATTTGTAATCTGGCATCTTTT-ACAGATGTCCG Melampsora_epitea_Mel_R AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-T-CTGAGCGCACTTTAATGTGACTCT-TTGTATC-CCATTTA---CCCCCAACCCAGAGGTGCATTGTGGCCCGTCAAACGGTTAGCAGTGTATCAGTACGTATGACAAAGTCTGACTTTGGCTTACATTACCCATAAGTTACCCCC-AT---TTACACTTATACAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCACAAAACTCCCCTCGGCCTTGACTCTTTCTAAAAGCGTCAGGGACGGATTCTGAGTGTTGGCTTTA------GCCTCGCTTTAAATAGATCAGCCCTTTTGAGTGAGTTTACTATTAGTTCAAAAGACGGACTCGATGTTGTATTTATATG--TCATTGAGGAGCTCTTTGGTCGTACCGACTATCCGCTAATGGGACCACTTGCCAAATAGCTTC----CTAAC---------------------CCTA------------------------TTAAA{CT}--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCAAATTTGTAATCTGGCATCTTTTCACAGGTGTCCG Melampsora_epitea_Mel_S AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-T-CTGAGCGCACTTTAATGTGACTCT-TTGTATC-CCATTTA---CCCCCAACCCAGAGGTGCATTGTGGCCCGTCAAACGGTTAGCAGTGTATCAGTACGTATGACAAAGTCTGACTTTGGCTTACATTACCCATAAGTTACCCCC-AT---TTACACTTATACAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCACAAAACTCCCCTCGGCCTTGACTCTTTCTAAAAGCGTCAGGGACGGATTCTGAGTGTTGGCTTTA------GCCTCGCTTTAAATAGATCAGCCCTTTTGAGTGAGTTTACTATTAGTTCAAAAGACGGACTCGATGTTGTATTTATATG--TCATTGAGGA{CG}CTCTTTGGTCGTACCGACTATCCGCTAATGGGACCACTTGCCAAATAGCTTC----CTAAA---------------------CCTA------------------------TTAAAT--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCAAATTTGTAATCTGGCATCTTTTCACAGGTGTCCG Melampsora_iranica_FJ386432 ----------------------GTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATACCCATTAC---CACCCCACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTTTATTCCGAAAGGTACACCTGTTTGAATGTCACAAAACTCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATTGATCAGCACTTTTGGATG-GTTGACTATTAGTTCAAAAGACGTACTTGATGTTGTATTTATATG--TCATTGAGGCAGTCTTTGGTCGTTCCGACTATCCGCTAATATGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------T-----------------TT-ATT--------------------------------------------{AT}CACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACTATGATTCCC{CT}TAGTAACGGCGAGTGAACAGGGA{AG}AAGCCCAAATTTGTAATCTGGCACTTTTT-ACAAGTGTCCG 'Melampsora larici-epitea JF825970' AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATAACTATTAC---CCCCCAACCCAGAGGTGCATTGTGGCCTTTCACGAGGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTATTTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATCCGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTACAT--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCAAATTTGTAATCTGGCACTTTTT-ACAAGTGTCCG 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' ----------------------------------AAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TGGTATAACTATTAC---CCCCCAACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGGACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTATTTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATCCGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTAAAT--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ 'Melampsora larici-epitea f.sp. larici-epitea AY444778' ----------------------------------AAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TGGTATAACTATTAC---CCCCCAACCCAGAGGTGCATTGTGGCCTTTCACGAGGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGGACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTATTTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATCCGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTACAT--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ Melampsora_laricis_AB116863 AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGTT-GCTTTATTGCGATTCT-TTGTATA-CCATTAC---CCCCCAACCCAGAGGTGCATTGTGGCCTTTCACGAGGTTAGCAGTGTATCAGTACGTATTACAAAGTCTGACTTTGTCTTACATTACATATAAGTTACCCCCCAT---TTACACTTAAGAAGTTTTAAGAATG-----ATACCCTATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATCGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTGAATGTCACAAAACTCCCCTCGGCTTTAACACTTTCTAAAAGGGTTATTGACGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTCCATGTTAGTTCAAAAGACGTACTTGATGTCGTATTTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATATGATGACTTGAAGAATAGCTTC----CTAAC---------------------CCCA------------------------TTAAAT--------------------------------------------TTACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ 'Melampsora laricis-pentandrae AY444771' ----------------------------------AAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATACTTATTAC---CCCCCAACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTGACCCCC-AT---TTACACTTAATAAGTTTTAGGATTG-----AGCCCGTAATTATATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTGAATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTGGAGACGGATTCTGAGTGTTGGCGTGATA--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTACATGTTAGTTCAAAAGACGTACTTGATGTTGTATTTATATG--TCATTGAGGCAGTCTTTGGTCGTTCCGACTATCCGCTAATATGGACGCTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTAATT--------------------------------------------TAACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ Melampsora_medusae_AY375274 ---------------TCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGTT-GCTTAAATGCGATTCT-TTGTATA-CTATTTACCCCCACCAACCCAGAGGTGCATTGTGGCCTTTAATTAGGTTAGCAGTGTATCAGTACGTATGACAAAGGCAA-CTTTGGCTTACATTACATATAAGTTACCCCCCAT---TTACACTTAAGAAGTTTTAAGAATG-----ATACC-TATAACTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAGAGGTACGCCTGTTTGAATGTCACGAAACCCCCCTCGTCTTTAACGCTTTCTAAAAGAGTTATTGACGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTACATGTTAGTTCAAAAGACGTACTTGATGTCGTATTTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATATGACGACTTGAAGAATAGCTTC----CTAAC---------------------CCCA------------------------TTGAAT--------------------------------------------TTACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---------------------------------------------------------------------------------------- Melampsora_medusae_tremuloidis_EU808031 ----------------------------------------CATTAATACA-TGTTGAG?TTGCTTAAATGCGATTCT-TTGTAT?ACTATTTACCCCCACCAACCCAGAGGTGCATTGTGGCCTTTAATTAGGTTAGCAGTGTATCAGTACGTATGACAAAGGC?AACTTTGGCTTACATTACATATAAGTTACCCCCCAT---TTACACTTAAGAAGTTTTAAGAATG-----ATA?CCTATAACTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAGAGGTACGCCTGTTTGAATGTCACGAAACCCCCCTCGTCTTTAACGCTTTCTAAAAGAGTTATTGACGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTACATGTTAGTTCAAAAGACGTACTTGATGTCGTATTTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATATGACGACTTGAAGAATAGCTTC----CTAAC---------------------CCCA------------------------TTGAAT--------------------------------------------TTACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ Melampsora_medusae_tremuloidis_EU808044 ----------------------------------------CATTAATACA-TGTTGAG?TTGCTTAAATGCGATTCT-TTGTAT?ACTATTTACCCCCACCAACCCAGAGGTGCATTGTGGCCTTTAA{CT}{GT}AGGTTAGCAGTGTATCAGTACGTATGACAAAGGC?AACTTTGGCTTACATTACATATAAGTTACCCCCCAT---TTACACTTAAGAAGTTTTAAGAATG-----ATA?CCTATAACTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTT-ATTCC{AG}AGAGGTACGCCTGTTTGAATGTCACGAAACCCCCCTCGTCTTTAACGCTTTCTAAAAGAGTTATTGACGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTACATGTTAGTTCAAAAGACGTACTTGATGTCGTATTTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATATGACGACTTGAAGAATAGCTTC----CTAAC---------------------CCCA------------------------TTGAAT--------------------------------------------TTACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ 'Melampsora medusae-populina AY375282' ---------------TCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGTT-GCTTAAATGCGATTCT-TTGTATA-CTATTTACCCCCACCAACCCAGAGGTGCATTGTGGCCTTTAATTAGGTTAGCAGTGTATCAGTACGTATGACAAAGGCGA-CTTTGGCTTACATTACATATAAGTTACCCCCCAT---TTACACTTAAGAAGTTTTAAGAATG-----ATACC-TATAACTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAGAGGTACGCCTGTTTGAATGTCACGAAACCCCCCTCGTCTTTAACGCTTTCTAAAAGAGTTATTGACGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTACATGTTAGTTCAAAAGACGTACTTGATGTCGTATTTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATATGACGACTTGAAGAATAGCTTC----CTAAC---------------------CCCA------------------------TTGAAT--------------------------------------------TTACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---------------------------------------------------------------------------------------- Melampsora_pinitorqua_EU808035 ----------------------------------------CATTAATACA-TGTTGAG?TTGCTTTATTGCGATTCT-TTGTAT?ACCATTAC---CCCCCAACCCAGAGGTGCATTGTGGCCTTTCACGAGGTTAGCAGTGTATCAGTACGTATTACAAAGTCTGACTTTGTCTTACATTACATATAAGTTACCCCCCAT---TTACACTTAAGAAGTTTTAAGAATG-----ATACCCTATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATCGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTGAATGTCACAAAACTCCCCTCGGCTTTAACACTTTCTAAAAGGGTTATTGACGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTCCATGTTAGTTCAAAAGACGTACTTGATGTCGTATTTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATATGATGACTTGAAGAATAGCTTC----CTAAC---------------------CCCA------------------------TTAAAT--------------------------------------------TTACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ Melampsora_populnea_EU808037 ----------------------------------------CATTAATACA-TGTTGAG?TTGCTTTATTGCGATTCT-TTGTAT?ACCATTAC---CCCCCAACCCAGAGGTGCATTGTGGCCTTTCACGAGGTTAGCAGTGTATCAGTACGTATTACAAAGTCTGACTTTGTCTTACATTACATATAAGTTACCCCCCAT---TTACACTTAAGAAGTTTTAAGAATG-----ATACCCTATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATCGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTGAATGTCACAAAACTCCCCTCGGCTTTAACACTTTCTAAAAGGGTTATTGACGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTCCATGTTAGTTCAAAAGACGTACTTGATGTCGTATTTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATATGATGACTTGAAGAATAGCTTC----CTAAC---------------------CCCA------------------------TTAAAT--------------------------------------------TTACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ 'Melampsora ribesii-purpureae AY444770' ----------------------------------AAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATACCCATTAC---CCACCCACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACG-TTTAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAGAGGTACGCCTGTTTGAATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTGGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTGAATATTAGTTCGAAAGACGTACTTGATGTTGTATTTATATG--TCATTGAGGCAGTCTTTGGTCGTACCGACTATCCGCTAATACGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCCA------T-----------------TAGAAT--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ 'Melampsora salicis-albae FJ455127' AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATACCCATTAC---C-ACCCACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAGAGGTACACCTGTTTGAATGTCATGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATAGATCAGCACTTTTGGATG-GTTGAATATTAGTTCGAAAGACGTACTTGATGTTGTATTTATATG--TCGTTGAGTCAGTCTTTGGTCGTTCCGACTATCCGCTAATACGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTCATT--------------------------------------------TAACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAGAAGCCCAAATTTGTAATCTGGCACTTTTT-ACGAGTGTCCG Melampsora_spp._AB116868 AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATA-CCATTTA---CCCCCCACCCAGAGGTGCATTGTGGCCCGTCAAAAGGTTAGCAGTGTATCAGTACGTATTACAAAGTCTGACTTTGTCTTACATTACCCATAAGTTACCCCCCAT---TTACACTTATACAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCACAAAACTCCCCTCGGCCTTAACTCTTTCTAAAAGCGTTAGGGACGGATTCTGAGTGTTGGCGTGTAC--ACGCCTCGCTTTAAATATATCAGCACTTTTGAATG-GTTTAATATTAGTTCAAAAGACGGACTTGATGTTGTATTTATATT--TCATTGAGAAGGTCTTTGGTCGTACCGACTATCCGCTAATAGGACAACTTGACGAATAGCTTC----CTAAC---------------------CCTA------------------------T-GAAT--------------------------------------------TACCT-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAA------------------------------------------------------------------------------------------------------------ Melampsora_spp._JF825971 AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATACCCATTAC---C-ACCCACCCAGAGGTGCATTGTGGCCTTTCACGAGGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTGAATGTCACAAAACTCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGA-T--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTGAATATTAGTTCGAAAGACGTACTTGATGTTGTATTTATATG--TCATTGAGGCAGTCTTTGGTCGCCACGACTATCCGCTAATATGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTAACT--------------------------------------------TTACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCAAATTTGTAATCTGGCACTTTTT-ACAAGTGTCCG Melampsora_spp._JN646134 ---------------TCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATCACTATTAC---CACCCAACCCAGAGGTGCATTGTGGCCTTTAT---GGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCATGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTATTTATATT--TCATTGAGGCAGTCTTTGGTCTTTATGACTATCCGCTAATACGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTAAAT--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---------------------------------------------------------------------------------------- Melampsora_spp._JN646135 ---------------TCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATCACTATTAC---CACCCAACCCAGAGGTGCATTGTGGCCTTTAT---GGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAACTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTATTTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATCCGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTACAT--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---------------------------------------------------------------------------------------- Melampsora_spp._JN646171 ---------------TCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATCACTATTAC---CACCCAACCCAGAGGTGCATTGTGGCCTTTAT---GGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----TTACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCATGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTATTTATATT--TCATTGAGGCAGTCTTTGGTCTTTATGACTATCCGCTAATACGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTAAAT--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---------------------------------------------------------------------------------------- Melampsora_spp._JN646232 ---------------TCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATAACTATTAC---CCCCCAACCCAGAGGTGCATTGTGGCCTTTCACGAGGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTGAATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTATTTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATCCGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTAAAT--------------------------------------------TACCC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---------------------------------------------------------------------------------------- Melampsora_spp._JN646237 ---------------TCCGTAGGTGAACCTGCGGAAGGATCATTAATACA-TGTTGAGCGCACTTTAATGTGACTCT-TTGTATCACTATTAC---CACCCAACCCAGAGGTGCATTGTGGCCTTTAT---GGTTAGCAGTGTATCAGTACGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-AT---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATATAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCGGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAGGGTACACCTGTTTGAATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGACGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGCACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTATTTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATACGAAAACTTGAAGAATAGCTTC----CTAAC---------------------CCTA------------------------TTACAT--------------------------------------------TAACC-TTTAGACTTCAAATCAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---------------------------------------------------------------------------------------- ; END; [ The following blocks are output data for analysis step 12842 ] BEGIN TREES; TITLE Melampsora_Final_Bayesian_Analysis_of_the_ITS_region; LINK TAXA = TaxaForAnalysisStep12842; TREE Fig._4 = [&R] (Chrysomyxa_weirii_GU049472:0.331566,((('Melampsora medusae-populina AY375282':0.002431,((Melampsora_medusae_tremuloidis_EU808031:0.002006,Melampsora_medusae_AY375274:0.002681)0.24:0.002518,Melampsora_medusae_tremuloidis_EU808044:0.002039)0.25:0.002494)1.00:0.04755,((Melampsora_pinitorqua_EU808035:0.001966,Melampsora_populnea_EU808037:0.001993)0.34:0.001972,Melampsora_laricis_AB116863:0.001907)0.99:0.011841)0.83:0.008126,(Melampsora_epitea_Mel_J:0.003117,(Melampsora_epitea_Mel_H:0.001783,Melampsora_epitea_AY471643:0.012208)1.00:0.009011)1.00:0.018771)1.00:0.045783,((((Melampsora_epitea_Mel_R:0.001873,(Melampsora_epitea_AY471639:0.01091,Melampsora_epitea_Mel_S:0.001715)0.95:0.003415)1.00:0.046743,Melampsora_spp._AB116868:0.00924)0.95:0.010225,'Melampsora abietis-populi AB116870':0.020894)1.00:0.036915,(((((((((Melampsora_epitea_GQ479249:0.001835,Melampsora_epitea_AY471631:0.001792)0.14:0.001787,(Melampsora_spp._JN646171:0.004017,Melampsora_spp._JN646134:0.00199)0.16:0.001966)0.14:0.001788,Melampsora_epitea_Mel_A:0.001771)1.00:0.008775,Melampsora_spp._JN646237:0.010707)0.47:0.003423,Melampsora_spp._JN646135:0.004781)1.00:0.008115,(Melampsora_spp._JN646232:0.002191,('Melampsora larici-epitea f.sp. larici-epitea AY444778':0.005637,'Melampsora larici-epitea JF825970':0.001938)0.58:0.003206)0.50:0.003682)0.44:0.004339,(((Melampsora_coleosporioides_AY652948:0.019887,Melampsora_amygdalinae_AY444776:0.008353)1.00:0.022785,'Melampsora larici-epitea f.sp. larici-daphnoides AY444777':0.005981)0.27:0.002441,Melampsora_epiphylla_AY652947:0.005188)0.39:0.004118)0.85:0.005811,Melampsora_caprearum_AY444779:0.009469)0.92:0.010576,(((Melampsora_iranica_FJ386432:0.013536,Melampsora_spp._JF825971:0.018272)0.59:0.008658,('Melampsora salicis-albae FJ455127':0.014567,'Melampsora ribesii-purpureae AY444770':0.022574)0.78:0.00761)0.85:0.008127,'Melampsora laricis-pentandrae AY444771':0.054313)0.91:0.010642)1.00:0.062426)0.46:0.010298); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr69450] END;