#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 18, 2025; 7:34 GMT TreeBASE (cc) 1994-2008 Study reference: Kenaley S.C., Smart L.B., & Hudler G.W. 2014. Genetic evidence for three discrete taxa of Melampsora (Pucciniales) affecting willows (Salix spp.) in New York State. Fungal Biology, 118(8): 704-720. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15162] [ The following blocks are input data for analysis step 12843 ] BEGIN TAXA; TITLE TaxaForAnalysisStep12843; DIMENSIONS NTAX=26; TAXLABELS Chrysomyxa_weirii_GUO49472 'Melampsora abietis-canadensis FJ666513' Melampsora_aecidioides_FJ666520 Melampsora_epitea_AF522170 Melampsora_epitea_DQ354564 Melampsora_epitea_HQ317514 Melampsora_epitea_Mel_A Melampsora_epitea_Mel_H Melampsora_epitea_Mel_J Melampsora_epitea_Mel_R Melampsora_epitea_Mel_S Melampsora_euphorbiae_DQ437504 'Melampsora euphorbiae-gerardianae EF192199' 'Melampsora larici-populina JQ042250' Melampsora_populnea_f._sp._laricis_FJ666509 Melampsora_populnea_f._sp._pinitorqua_FJ666523 Melampsora_spp._EF192193 Melampsora_spp._EF192194 Melampsora_spp._EF192197 Melampsora_spp._EF192198 Melampsora_spp._EF192202 Melampsora_spp._EF192203 Melampsora_spp._EF192204 Melampsora_spp._EF192205 Melampsora_spp._EF192206 Melampsora_spp._GU058014 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M20154] TITLE 'Melampsora, Fig 5 Final LSU Alignment'; LINK TAXA = TaxaForAnalysisStep12843; DIMENSIONS NCHAR=744; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Chrysomyxa_weirii_GUO49472 -----------------------------CTGTAGATGATATGGACTACCAGTGCATGTGTGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTAAAGTTAGTTTTGTTGTCGTTAGTTCAGCTTCGCAAGGAGTGTATTCTAATGATCATCAAGCCAGCATCAATTT-TGGGTATGGGATAAGGGTTTTGAGAACGTAGCAAACA-----AGTTGTGTTATAGCTTGAAACTTGGATACCATGCTTGAGATTGAGGATCCTGTGGTGAGCTTAGTGCAGACTTATTTATAGGTCTTCTTGCCATGGATGTTGGTGAAATAACTTGAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCATGCGAGTATTAGGGTGTTGAAACCCGAATGCGAAATGAAGGTGATGGCAAGATGTGATCTGCAAGGTGCAACATCGACCGGTCCTGATTATTTATATAAAGGTACTGAGTAAGAGCATGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGAGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCA---------------------- 'Melampsora abietis-canadensis FJ666513' GAAAAGCAGCATCATTGAAGGTGAAAATCCTGT-AATGATATGGACTACCAGTGCATTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCATACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTATTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCCGATGATAAGCAAGTCAACATCAATCGATGAGTGTTGGATAAGGGTTTCGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGGGACTTGGATACAACGCTCTTGATTGAGGAACGCGTAGTAAGCTTTGAGCGGGTTCGA--AAGAATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATTTCAGATGTGATCCGCAAGGTGCAACATCGGCCGGTCCTGATTATTTATATGACGGTACTGAGCAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGCAGAATCTGGGTA Melampsora_aecidioides_FJ666520 GAAAAGCAGCATCGTTGAAGGTGAAAATCCTGTAGATGATATGGACTACCAGTACTCTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGA{AG}ACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGTAAACGTTTGAAGTTAGTTTTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAGTCTATGAGTGTTGGAGAAGGGTTTTGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATAC{AG}ATGCTTTGGATTGAGGAACGCGTAGTAAGCTTTGAGCGGATTCGA--AAGGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATCTAAGATGTGATCCGCAAGGTGCAACATCGGCCAGTCTGGATCATTTATGT{AG}AAGGTACTGAGCAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_epitea_AF522170 GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAGATGATATGGACTACCAGTATATTTGTGATACGG?TTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTTTTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAGTCTATGAGTGTCGGATAAGGGTTTTGAGGACGTAGCAATTT-----AATTGTGTTATAACTTGAAGCTTGGATACGATGCTTTGGATTGAGGAACGCGTAGTAAGCTTTGAGCGGATTCGA--AAGGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATCTAAGATGTGATCCGCAAGGTGCAACATCGGCCGGTCTGGATCATTTATGTGAAGGTACTGAGCAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_epitea_DQ354564 GAAAAGCAGCATC{AG}TTGAAGGTGAAAATCCTGT{AT}{AG}ATGATATGGACTACCAGT{AG}{CT}ATTTG{CT}GATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGT{AT}TTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCA{AG}TCTATGAGTGTTGGATAAGGGTTT{CT}GAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATAC{AG}ATGCTTT{GT}GATTGAGGAACGCGTAGTAAGCTTTG{AT}GCGGATT{CG}GA--AA{CG}GATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATTT{AC}{AG}GATGTGATCCGCAAGGTGCAACATCG{AG}CC{AG}GTC{CT}{GT}GAT{CT}ATTTAT{AG}TGA{AC}GGTACTGAG{CT}AAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_epitea_HQ317514 GAAAAGCAGCATCGTTGAAGGTGAAAATCCTGTTAATGATATGGACTACCAGTGCATTTGCGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTATTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAATCT{AG}T{GT}AGTGTTGGATAAGGGTTTCGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATACGATGCTTTTGATTGAGGAACGCGTAGTAAGCTTTGTGCGGATTGGA--AACGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATTTCGGATGTGATCCGCAAGGTGCAACATCGACCGGTCCTGATTATTTATATGACGGTACTGAGTAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_epitea_Mel_A GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAGATGATATGGACTACCAGTATATTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTTTTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAGTCTATGAGTGTTGGATAAGGGTTTTGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATACGATGCTTTGGATTGAGGAACGCGTAGTAAGCTTTGAGCGGATTCGA--AAGGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATCTAAGATGTGATCCGCAAGGTGCAACATCGGCCAGTCTGGATCATTTATGTGAAGGTACTGAGCAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_epitea_Mel_H GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTTAATGATATGGACTACCAGTGCATTTGCGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTATTGTATTTGTTGGATCAGCTTCGCAAGAGGTGTATTCTGATGATAAGCAAGTCAACATCAATCTATGAGTGTTGGATAAGGGTTTTGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATACGATGCTTTTGATTGAGGAACGCGTAGTAAGCTTTGAGCGGATTGGA--AACAATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATTTCGGATGTGATCCGCAAGGTGCAACATCGACCGGTCCTGATTATTTATATGACGGTACTGAGTAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_epitea_Mel_J GAAAAGCAGCATCGTTGAAGGTGAAAATCCTGTTAATGATATGGACTACCAGTGCATTTGCGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTATTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAATCTATGAGTGTTGGATAAGGGTTTCGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATACGATGCTTTTGATTGAGGAACGCGTAGTAAGCTTTGTGCGGATTGGA--AACGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATTTCGGATGTGATCCGCAAGGTGCAACATCGACCGGTCCTGATTATTTATATGACGGTACTGAGTAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_epitea_Mel_R GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAGATGATATGGACTACCAGTGCATTTGTGATGCGATTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCATACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTTTTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAATCTTTGAGTGTTGGATAAGGGTTTTGAGGACGTAGCAATTT-----AATTGTGTTATAACTTGAGACTTGGATACAATGCTTGGGATTGAGGAACGCGTAGTAAGCTTTGAGCGGG{CT}CAGA--AATG{AG}TCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCATGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATTTCAAATGTGATCCGCAAGGTGCAACATTGACCGGTCCTGATTATTTATATGACGGTACTGAGTAAGAGCATGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTTGAATCTGGGTA Melampsora_epitea_Mel_S GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAGATGATATGGACTACCAGTGCATTTGTGATGCGATTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCATACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTTTTGTATTCGTT{AG}GATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAATCTTTGAGTGTTGGATAAGGGTTTTGAGGATGTAGCAATTT-----AATTGTGTTATAACTTGAGACTTGGATACAATGCTTGGGATTGAGGAACGCGTAGTAAGCTTTGAGCGG{AG}{CT}CAGA--AATGGTCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCATGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATTTCAAATGTGATCCGCAAGGTGCAACATTGACCGGTCCTGATTATTTATATGACGGTACTGAGTAAGAGCATGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTTGAATCTGGGTA Melampsora_euphorbiae_DQ437504 GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAGATGATATGGACTACCAGGACATTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAAAAGTACGTGAAATTGCTGAAAGGGAAACGTTTAAAGTTAGTTTTGTATTCGTTAGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAGTCTATGAGTGTC{GT}GATAAGGGTTTTGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATACGATGCTTTGGATTGAGGAACGCGTAGTAAGCTTTGAGCGGATTCGA--AAGGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATCTAAGATGTGATCCGCAAGGTGCAACATCGGCCAGTCTGGATCATTTATGTGAAGGTACTGAGCAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA 'Melampsora euphorbiae-gerardianae EF192199' GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAGATGATATGGACTACCAGGACATTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATTAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTTTTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAGTCTATGAGTGTCGGAGAAGGGTTTTGAGAACGTAGCAATTT-----AGTTGTGTTATAGCTTGAGACTTGGATACGATGCTTTGGATTGAGGAACGCGTAGTAAGCTTTGAGCGGATTCGA--AAGGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATCTAAGATGTGATCCGCAAGGTGCAACATCGGCCGGTCTGGATCATTTATGTGAAGGTACTGAGCAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA 'Melampsora larici-populina JQ042250' GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAGATGATATGGACTACCAGTGCATTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTTTTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAATCTATGAGTGTCGGAGAAGGGTTTTGAGAATGTAGCAATTTTTATTAATTGTGTTATAGCTTGAGACTTGGATACGATGCTTTGGATTGAGGAACGCGTAGTAAGCTTTGAGCGGATTCGA--AAGGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATTTCAGATGTGATCCGCAAGGTGCAACATCGACCAGTCTGGATCATTTATGTGAAGGTACTGAGTAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_populnea_f._sp._laricis_FJ666509 GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAAATGATATGGACTACCAGTGCATTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTATTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCCGATGATAAGCAAGTCAACATCAGTCTATGAGTGTTGGAGAAGGGTTTTGAGAATGTAGCAATTT-----AATTGTGTTATAGCT{CT}GAGACTTGGATACGACGCTCTTGATTGAGGAACGCGTAGTAAGCTTTGAGCAGGTTCGA--AAGGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGCGTTGAAACCCGAATGCGTAATGAAAGT-AATTTCAGATGTGATCCGCAAGGTGCAACATCGACCGGTCCTGATTATTTATATGACGGTACTGAGTAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_populnea_f._sp._pinitorqua_FJ666523 GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAAATGATATGGACTACCAGTGCATTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTATTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCCGATGATAAGCAAGTCAACATCAGTCTATGAGTGTTGGAGAAGGGTTTTGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATACGACGCTCTTGATTGAGGAACGCGTAGTAAGCTTTGAGCAGGTTCGA--AAGGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGCGTTGAAACCCGAATGCGTAATGAAAGT-AATTTCAGATGTGATCCGCAAGGTGCAACATCGACCGGTCCTGATTATTTATATGACGGTACTGAGTAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_spp._EF192193 GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAGATGATATGGACTACCAGTATATTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTTTTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAGTCTATGAGTGTCGGATAAGGGTTTTGAG{AG}A{CT}GTAGCAATTT-----AATTGTGTTATA{AG}CTTGAAGCTTGGATACGATGCTTTGGATTGAGGAACGCGTAGTAAGCTTTGAGCGGATTCGA--AAGGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATCTAAGATGTGATCCGCAAGGTGCAACATCGGCCGGTCTGGATCATTTATGTGAAGGTACTGAGCAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_spp._EF192194 GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAGATGATATGGACTACCAGTATATTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTTTTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAGTCTATGAGTGTCGGATAAGGGTTTTGAGGACGTAGCAATTT-----AATTGTGTTATAACTTGAAGCTTGGATACGATGCTTTGGATTGAGGAACGCGTAGTAAGCTTTGAGCGGATTCGA--AAGGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATCTAAGATGTGATCCGCAAGGTGCAACATCGGCCGGTCTGGATCATTTATGTGAAGGTACTGAGCAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_spp._EF192197 GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAGATGATATGGACTACCAGTATATTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTTTTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAGTCTATGAGTGTTGGATAAGGGTTTTGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATAC{AG}ATGCTTTGGATTGAGGAACGCGTAGTAAGCTTTGAGCGGATTCGA--AAGGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATCTAAGATGTGATCCGCAAGGTGCAACATCGGCCAGTCTGGATCATTTATGTGAAGGTACTGAGCAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAG{CT}GGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_spp._EF192198 GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAGATGATATGGACTACCAGTACTTTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTT{AG}AAGTTAGTTTTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAGTCTATGGGTGTCGGAGAAGGGTTTTGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATACGATGCTTTGGATTGAGGAACGCGTAGTAAGCTTTGAGCGGATTCGA--AAGGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATCTAAGATGTGATCCGCAAGGTGCAACATCGGCCAGTCTGGAACATTTATGTGAAGGTACTGAGCAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_spp._EF192202 GAAAAGCAGCATCGTTGAAGGTGAAAATCCTGTTAATGATATGGACTACCAGTGCATTTGCGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTATTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAATCTATGAGTGTTGGATAAGGGTTTCGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATACGATGCTTTTGATTGAGGAACGCGTAGTAAGCTTTGTGCGGATTGGA--AACGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATTT{AT}GGATGTGATCCGCAAGGTGCAACATCGACCGGTCCTGATTATTTATATGACGGTACTGAGTAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_spp._EF192203 GAAAAGCAGCATCGTTGAAGGTGAAAATCCTGTTAATGATATGGACTACCAGTGCATTTGCGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTATTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAATCTATGAGTGTTGGATAAGGGTTTCGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATACGATGCTTTTGATTGAGGAACGCGTAGTAAGCTTTGTGCGGATTGGA--AACGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATTTCGGATGTGATCCGCAAGGTGCAACATCGACCGGTCCTGATTATTTATATGACGGTACTGAGTAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_spp._EF192204 GAAAAGCAGCATCGTTGAAGGTGAAAATCCTGTTAATGATATGGACTACCAGTGCATTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTATTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAATCTGTTAGTGTTGGATAAGGGTTTTGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATACGATGCTTTTGATTGAGGAACGCGTAGTAAGCTTTGTGCGGATTGGA--AACGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATTTCGGATGTGATCCGCAAGGTGCAACATCGACCGGTCCTGATTATTTATATGACGGTACTGAGTAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_spp._EF192205 GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTTAATGATATGGACTACCAGTGCATTTGCGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTATTGTATTTGTTGGATCAGCTTCGCAAGAGGTGTATTCTGATGATAAGCAAGTCAACATCAATCTATGAGTGTTGGATAAGGGTTTTGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATACGATGCTTTTGATTGAGGAACGCGTAGTAAGCTTTGAGCGGATTGGA--AACAATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATTTCGGATGTGATCCGCAAGGTGCAACATCGACCGGTCCTGATTATTTATATGACGGTACTGAGTAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_spp._EF192206 GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTTAATGATATGGACTACCAGTGCATTTGCGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAG{CT}AAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTATTGTATT{CT}GTTGGATCAGCTTCGCAAG{AG}{AG}GTGTATTCTGATGATAAGCAAGTCAACATCAATCT{AG}T{GT}AGTGT{CT}GGATAAGGGTTTTGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATACGATGCTTTTGATTGAGGAACGCGTAGTAAGCTTTGAGC{AG}GATTGGA--AAC{AG}ATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATTTCGGATGTGATCCGCAAGGTGCAACATCGACCGGTCCTGATTATTTATATGACGGTACTGAGTAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA Melampsora_spp._GU058014 GAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAGATGATATGGACTACCAGTATATTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTAACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTTTTGTATTCGTTGGATCAGCTTCGCAAGGAGTGTATTCTGATGATAAGCAAGTCAACATCAGTCTATGAGTGTTGGATAAGGGTTTTGAGAATGTAGCAATTT-----AATTGTGTTATAGCTTGAGACTTGGATACAATGCTTTGGATTGAGGAACGCGTAGTAAGCTTTGAGCGGATTCGA--AAGGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATCTAAGATGTGATCCGCAAGGTGCAACATCGGCCAGTCTGGATCATTTATGTGAAGGTACTGAGCAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTA ; END; [ The following blocks are output data for analysis step 12843 ] BEGIN TREES; TITLE Melampsora_Final_LSU_Analysis_Bayesian_Concensus; LINK TAXA = TaxaForAnalysisStep12843; TREE Fig._5 = [&R] (Chrysomyxa_weirii_GUO49472:0.368084,(Melampsora_epitea_Mel_R:0.007926,Melampsora_epitea_Mel_S:0.005305)1.00:0.067458,(((((((Melampsora_spp._EF192203:0.003943,Melampsora_epitea_Mel_J:0.004009)0.17:0.004048,(Melampsora_epitea_HQ317514:0.003895,Melampsora_spp._EF192202:0.007968)0.16:0.004082)0.55:0.008378,Melampsora_spp._EF192204:0.016656)0.55:0.011905,Melampsora_epitea_DQ354564:0.004316)0.48:0.013116,(Melampsora_spp._EF192206:0.004169,(Melampsora_spp._EF192205:0.004079,Melampsora_epitea_Mel_H:0.004083)0.72:0.013389)0.81:0.017373)0.78:0.026464,('Melampsora abietis-canadensis FJ666513':0.044588,(Melampsora_populnea_f._sp._laricis_FJ666509:0.003852,Melampsora_populnea_f._sp._pinitorqua_FJ666523:0.003969)1.00:0.0197)1.00:0.022031)0.86:0.017656,(((Melampsora_spp._EF192198:0.013237,Melampsora_aecidioides_FJ666520:0.021285)0.88:0.00837,((Melampsora_euphorbiae_DQ437504:0.020845,'Melampsora euphorbiae-gerardianae EF192199':0.021794)0.42:0.007554,(((Melampsora_spp._GU058014:0.006928,Melampsora_spp._EF192197:0.003994)0.46:0.006212,Melampsora_epitea_Mel_A:0.004056)0.84:0.01023,((Melampsora_spp._EF192194:0.003827,Melampsora_epitea_AF522170:0.003953)0.45:0.005914,Melampsora_spp._EF192193:0.00388)1.00:0.028439)0.80:0.008479)0.33:0.004948)1.00:0.030056,'Melampsora larici-populina JQ042250':0.004679)1.00:0.037626)0.83:0.03201); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr69452] END;