#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 02, 2026; 23:14 GMT

TreeBASE (cc) 1994-2008

Study reference:
Olson M.E. 2002. Intergeneric relationships within the Caricaceae-Moringaceae clade
(Brassicales), and potential morphological synapomorphies of the clade and its
families. International Journal of Plant Sciences, 163(1): 51–65.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S801]

[ The following blocks are input data for analysis step 1288 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep1288;
        DIMENSIONS NTAX=8;
        TAXLABELS
            Carica_microcarpa_AF378578
            Cylicomorpha_AF378579
            Cylicomorpha_AF378580
            Jacaratia_corumbensis_AF405245
            Jarilla_chocola_AF378577
            Jarilla_heterophylla_AF378576
            Moringa_drouhardii_AF378581
            Moringa_longituba_AF378598
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M209]

	TITLE ITS_Caricaceae;
	LINK TAXA = TaxaForAnalysisStep1288;
	DIMENSIONS NCHAR=570;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570   ]
[                                           .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .   ]
Carica_microcarpa_AF378578         GTAACAGCTTT-GGACGTGTCGTCTT-GCTGGG-CGCTTGATCAAAA---TAT--GAG-CCCCGCAAA--GGGGCGCGCGAGCCCCGGAGTTGTTT-GGGG--CCGCGCTTTTCGCAGTTCCTTGT----AC--TTGTTTTCTCGCGAGCGGGCAGCAGGGCACAAGCCACACGCCGCCCACGTTTAGATATTGCTGAAAGCCGTTGCCTATAGAGCCGACAA--------------------CTTGACGCTATGAACGACACTTAACGTCTTAGGGCGCTTAGTAGCTCAGAAACTTGCGTTCAACGCGGGATCCGGTAGGCCGACTCCCGTGCAGACGGACCCACAGTG-CGTGTCAGCGGGGGTTTTT---AGGGTC-GCTTCCAGGCC-CCCGCCT-ACGACCGGAGGGCAAGTGCGCCGCGT-GCC-GGCATCG----CCAACCGGGTTTAT-GCTTCGAGCCCTCCGCT-CGCCGTTCCTGCTCAACCACCAAATTGTTTG-CGATGC-GATAGAA-GCGGACCG-AGTGGCGCTGGGGTCCAGTCCGCCCTGCTGGGCGACTT
Cylicomorpha_AF378579              GTAACAGCTTT-GGACGTATCGTCTT-GTTGGG-CTCTTGATCAACA--CTGT---ATTTCCCTCAACGAGGG---------TCCCAGAGTTGTTT-GGGG--CCGCACC?TTCGCGGTTCCTTTT----ACTTTTGTTTTCTCACGAGCGAATAGCAGAGCACGATCCACATGCTACTCGCGTATAAATTTTGCTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCGCTTAGTAGCTCAAAAACTTGCGTTCAACGCGGGATCCGGTAGACCGACTCCCGTGCAGACGGACCCGCAGTG-CGTATCAGTGGGA-GTTTT----TGCAGTGCTTCCTAACA-CCCGCCT-ACTACTGGAGGGCAAACACGCGAA-T-GCCACAAATCG----CCTACCAGATTTATAGTTAAGAGCTCGCCGTT-CATGGAGCTTGCTCAACCACCAAATAATTTTTAGA-GCTTCGAGAAA-CA-AGCTAAACAACGCTGGGGTCCAGT?CGCCCTGATGGGCAACTA
Cylicomorpha_AF378580              GTAACAGCTTT-GGACGTATCGTCTT-GTTGGG-CTCTTGATCAACA--CTGT---ATTTCCCTCAACGAGGG---------TCCCAGAGTTGTTT-GGGG--CCGCACCTTTCGCGGTTCCTTTT----ACTTTTGTTTTCTCACGAGCGAATAGCAGAGCACGATCCACATGCTACTCGCGTATAAATTTTGCTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCGCTTAGTAGCTCAAAAACTTGCGTTCAACGCGGGATCCGGTAGACCGACTCCCGTGCAGACGGACCCGCAGTG-CGTATCAGTGGGA-GTTTT----TGCAGTGCTTCCTAACA-CCCGCCT-ACTACTGGAGGGCAAACACGCGAA-T-GCCACAAATCG----CCTACCAGATTTATAGTTAAGAGCTCGCCGTT-CATGGAGCTTGCTCAACCACCAAATAATTTTTAGA-GCTTCGAGAAA-CA-AGCTAAACAACGCTGGGGTCCAGTCCGCCCTGATGGG---TTC
Jacaratia_corumbensis_AF405245     GTAACAGTTTT-GGACATGTCGTCTT-GCTGAA-CGTTTGATCAACA--CTGT--TACCTCCTACAAC--GGGGCGCGCCAACCCCGGAGTTGTTT-AGAG--CCACGT?TTTCGGAATTCCTTTT----AC--TTACCTTCTCGTGAACGGGCAGCA-AGCACAAGACACACGCCGCTCGCGTTTAGGTTTTACCGATAGCCGTTGTATATAGAGCCGAGAGCGTAGCTACTTCTTGTATCGCTTTACGCTATGAACTACATTTAACATCTTAGTATACTTAGTAGTCCAGAAACTTGCGTTCAACACGGGGTTCGGTAGGTCGACTCCCGTACAAACGGATTCACAATA-CGTATCAGCGGGGTTTTTTTTTAGGGAT-GCTTCCAGACG-TCCACTT-ACAACCGGA?GGCAAGTACAC-GG-TGGGCTGGC---------------------------------------------------------------------------------------------------------------------------------------
Jarilla_chocola_AF378577           GTAACAGCTTT-GGACGTGTCGTCTT-GCTGGG-CTCTTAACCA-CAAACTGT--GAG--CCCACAAC--GGGGCGCGCCGGACCCGGAGTTGTTT-GGTG--CCGCGCCTTTCGCAGTTCCTTGC----AC--TTGTTTTCTCGCGAGCGGGCAGCAGGGCACGATCCACGTGCCGCCCGCGTTAAGGTTTTTCTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCGCTTAGTAGCTCAGAAACTTGCGTTCAACGCGGGGTCCGGTGGACCGACTCCCGTGCGGACGGACCCACAGTG-C-TGTCAGCAGGGTGTTTTTTTAGGCAC-GCTTCCATACA-CCCGCCTAAAGACCGGAGGGCGTTCGATC-GGGTGGCC-GGCGACG----CCAACCAGGTTTA-CGCTTCGAGCACGCCGCT-CGCCGCTCCTGCTCAACCACCAACTTATTT--CGCTGC-GACAGA--GCAGACCGACGTGTCGCTGGGGTCCAGTCCGCCCTGATGGGCGACTC
Jarilla_heterophylla_AF378576      ------------GGACGTGTCGTCTA-GCTGGG-CTCTTAACCA-CGAACTGT--GAG--CCCACAAC--GGGGCGCACCGGACCCGGAGTTGTTT-GGTG--CCGCGCCTTTCGCAGTTCCTTGT----AC--TTGCTTTCTCGCAAGCGGACAGCAGGGCAC?AGCCACGCGCCGCCCGCGTTAAGGTTTTGCTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCGCTTAGTAGCTCAGAAACTTGCGTTCAACGCGGGGTCCGGTAGACCAACTCCCGTGCAGACGGACCCACAGTG-C-TGTCAGCAGGGTGTTTTTT-ATACAC-GCTTCCAGACA-CCCGCCT-AAGACCGGAGGGCGTTCGCTC-GGGTGGCC-GGCGACG----CCAACCATGTTTA-CGCTTCGAGCACGCC?CT-CGTCGCTCCTGCTCAACCACCAACTTATTT--CGCTGC-GACAGA--GCAGACCGACGTGGCGCTGGGGTCCAGTCCGCCCTGATGGGCGACTC
Moringa_drouhardii_AF378581        --AACAGCTTT-GAACGAATCA-CTTTG-TGGGACACTTATACAACA-TTTGTGCGAGTTCCCCGCTC--GGG-CGTGTTGTTCCCAGAGTTGTTTTGTGTGTCAGGTCCTA-CGCGGTTC?TTAAGTTTAC--TTA----CTCGTACGGGGGTAGTGGAGCTAGAGCCACGTACCGTCCGAGTATAGATTTTACTAAGAGCCGTTACCTATAGAGCCGATAGCGTAACTACTTCTTGCATCACTTTACTCTATGAATCACACTTAACATCTTAGAACACTCGGTAACTCAGAAACTTGCGTTCAATGTGGGTTTCGGTAGTTCAACCCCCGTGCAGACGGATCCACAGTA-CGTA?CAGCGGGG-GCT------TAGGGAAATTCCTAGCACCCAGTCT-ATAACCGGA----TAAGACGTGG---------AAATCGAGAGCCAACCGGATTTTTAC-TCAGAGTTCGCTGCGGCAC--AGT--GTCGAACCGTCACCATCTTTTTCGAAGT-ACGAGGAAGCA--CGTATTCTACGCTGGAATTCAATTCGTCCTGGTAGGT{AG}ACTC
Moringa_longituba_AF378598         GTAACAGCTTTTGAGCGAGTCG-CTCTGCTGGG-CGCTTGTACAAAA-TTTGTGTGACCTCCCC{AG}CTC--GGGGCGCGCCGTTCCCAGGGTTGTTTTGGGTGTCGCGCCCTA-CGCGGTTCCATGTCCTTAC--CTC----CTAGTGCGGGGGCAGCCGGGCTAGAGCCACGCACCGCCCCAGTACGGATTTTACTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCACTTGGTAGCTCAGAAACTTGCGTTCAACGCGGGTTTCGGTAGGCCGGCTCCCGTGCAGACGGACCCACAGTTTCGTAGCAGCGGGG-GCT------TAGGGAAGCCCCTAGCGCCCCGCCT-TTAACCGGAGGGC----ACGCGG---------AGACCGAGCGCCAACCGGATTTTTGC-TCGGAGCTCCCTGCGGCGC--AGT--GCCGAACCGCCACCATCTTTTTCGGAGC-ACGTCGTCGCA--CGCGCTCTACTCTGGGGTCCAGTCCGCCCTCGTGGGCGA-TC
;
END;

[ The following blocks are output data for analysis step 1288 ]
BEGIN TREES;
      TITLE Tb6064;
      LINK TAXA = TaxaForAnalysisStep1288;
      TREE Fig._2A = [&R] ((Moringa_drouhardii_AF378581,Moringa_longituba_AF378598),((Cylicomorpha_AF378579,Cylicomorpha_AF378580),(Jacaratia_corumbensis_AF405245,(Carica_microcarpa_AF378578,(Jarilla_heterophylla_AF378576,Jarilla_chocola_AF378577)))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1163]


END;