#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 05, 2024; 9:27 GMT TreeBASE (cc) 1994-2008 Study reference: Wynns J.T., & Asmussen-lange C. 2014. A comparison of 16 DNA regions for use as phylogenetic markers in the pleurocarpous moss genus Plagiothecium (Hypnales). American Journal of Botany, 101(4): 1-18. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15161] [ The following blocks are input data for analysis step 12902 ] BEGIN TAXA; TITLE TaxaForAnalysisStep12902; DIMENSIONS NTAX=25; TAXLABELS Herzogiella_seligeri_Denmark Isopterygiopsis_muelleriana_Scotland Plagiothecium_cavifolium_Denmark Plagiothecium_cavifolium_Denmark_B Plagiothecium_cavifolium_Germany Plagiothecium_curvifolium_Denmark Plagiothecium_curvifolium_Germany Plagiothecium_denticulatum_Denmark Plagiothecium_denticulatum_var_obtusifolium_Germany Plagiothecium_draytonii_HI_USA Plagiothecium_euryphyllum_Yunnan_China Plagiothecium_handelii_Yunnan_China Plagiothecium_laetum_Germany Plagiothecium_latebricola_Denmark Plagiothecium_neckeroideum_Yunnan_China Plagiothecium_nemorale_Germany Plagiothecium_nemorale_Iran Plagiothecium_nemorale_aquatic_Germany Plagiothecium_piliferum_WA_USA Plagiothecium_platyphyllum_Finland Plagiothecium_ruthei_Denmark Plagiothecium_succulentum_Denmark Plagiothecium_undulatum_Denmark Pseudotaxiphyllum_elegans_Germany Taxiphyllum_sp_Yunnan_China ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M20451] TITLE trnG_Wynns_&_Asmussen_Lange; LINK TAXA = TaxaForAnalysisStep12902; DIMENSIONS NCHAR=637; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Herzogiella_seligeri_Denmark GGAAGGCTAAGGGTTATAGTCGGCGCTTTTATTT--------------------AATTATTGCCTCTATTTCAAAACCGAACATGAAACTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATTTTCTTCTATTATATTTTGTATTCAAATAGATTCATACCATCTATGTTAGTTTCTTCATAATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAGAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCAATGAAAATCTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAATTTTTTTTTTTTTCAATTAAAGATTCAGTTACGAA--AAAAAAATATTTTGGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTT-TTTTATTTTTGTCA----TTGTAGGAATTTTGCTTTTCTATTTTAGAAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTAAAA-TAATTTT---------------AAAGACCCCTTAACTATGTTTAAGTTAATTATA Isopterygiopsis_muelleriana_Scotland GGAAGGCTAAGGGTTATAGTCGGCGCTTTTATTT--------------------GATTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATCTTCTTCTATTATATTTTATATTTGAATAGATCCATACCATCTATGTTAGTTTTTTCATCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTAGTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCGATAAAAATCTTAATAAATTTAGTAAACTAAATTTATTTTTTTAGAGCTAAATTGCTTTAA-TTTTTTTTTTTTCTATTAAAGATTCAGTTACGAA--AAAAAAATATTTTGGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTCCATTTTTGTCA----TTGTAGGAATTTTGCTTTTCTATTTTAGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTGGAA-TAATTTT---------------AAAGACCCCTTAACTATGTTTAAGTTAATTATG Plagiothecium_cavifolium_Denmark GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATCTTCTCCTATTCCATTTTGTATTCGAATAGATCCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTAAAAACTTTTAATAAAAAA-TTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTATCA----TTGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTTAAA-TAATTTT---------------AAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_cavifolium_Denmark_B GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATCTTCTCCTATTCCATTTTGTATTCGAATAGATCCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTAAAAACTTTTAATAAAAAA-TTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAATATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTATCA----TTGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTTAAA-TAATTTT---------------AAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_cavifolium_Germany GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATCTTCTCCTATTCCATTTTGTATTCGAATAGATCCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTAAAAACTTTTAATAAAAAA-TTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTATCA----TTGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTTAAA-TAATTTT---------------AAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_curvifolium_Denmark GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATTTCCTCCTATTCCATTTTGTATTCGAATAGATTCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTATCA----TTGTAGGAATCTCGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAAATTTAAA-TAATTTT---------------AAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_curvifolium_Germany GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATTTCCTCCTATTCCATTTTGTATTCGAATAGATTCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTATCA----TTGTAGGAATCTCGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAAATTTAAA-TAATTTT---------------AAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_denticulatum_Denmark GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGGATTTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATCTTCTCCTATTCCATTTTGTATTCGAATAGATTCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATTTTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAAAATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTATCA----TTGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAGATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTTAAA-TAATTTT---------------AAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_denticulatum_var_obtusifolium_Germany GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGGATTTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATCTTCTCCTATTCCATTTTGTATTCGAATAGATCCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATTTTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTATTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAAAATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTATCA----TTGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAGATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTTAAA-TAATTTT---------------AAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_draytonii_HI_USA GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATTTTCTCCTATTCCATTTTGTATTCGAATAGATCCATACCATCTATGTTAGTTTCTTAATCATCTTCATCAGATAACTTCATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTGTCATTGATTGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTCAAAA-TAATTTT---------------AAAGACCCCTTAACTATGTCTAAGTTAATTATA Plagiothecium_euryphyllum_Yunnan_China GGAAGGCTAAGGGTTATAGTCGGCGATTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAAATTTCTCCTATTCCATTTTGTATTCGAATAGATCCATACCATCTATGTCAGTTTCTTAACCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTTTTTTTTAATTAAAGATTCAGTTACGAAGAAAAAAAATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTACTTTTTTCATTTTTGTCA----TTGTAGGAATTTTGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTAAAA-TAATTTTATTTAAAATAATTTTAAAGACCCCTTAACTATGCTTAAGTTAATTATA Plagiothecium_handelii_Yunnan_China GGAAGGCTAAGGGTTATAGTCGGCGCTTTTATTT--------------------AGTTATTGCCTCTATTTCAAAACCGAACGTGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATTTTCTTCTATTCTATTTTCTATTCGAATAGATCCATACCATCTATGTTAGTTTTTTCATCATCTTTATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAGAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-AACGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTTTTAGAGCTAAATTGCTTTAA-----TTTTTTTTTAATTAAAGATTCAGTTACGAA-AAAAAAAATATTTTGGGTTTCTATCCATAGATTTTCAGCTAAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTAATTTTTGTCA----TTGTAGGAATTTCGCCTTTCTATTTTAAGAAAGATCTCAGATCTTTTTAGAAATAAAGTTATTGGTCAGAAATTTGAAA-TAATTTT---------------AAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_laetum_Germany GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATTTCCTCCTATTCCATTTTGTATTCGAATAGATTCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAAAATTCCGTTTTGCTTTTTTCATTTTTATCA----TTGTAGGAATCTCGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTTAAA-TAATTTT---------------AAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_latebricola_Denmark GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATTTTCTCCTATTCCATTTTGTATTCGAATAGATCCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTATAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAATAAACTAAACTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA---AAAAAATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTTATTTTTATCA----TTGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAAATTTAAA-TAAATTT---------------AACGACCCCTTAACTATGTTCAAGTTAATTATA Plagiothecium_neckeroideum_Yunnan_China GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAAATTTCTCCTATTCCATTTTGTATTCGAATAGATCCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTAAAAAGAATTCCGTTTTGCTTTTTTTATTTTTATCA----TCGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTTAAA-TAAATTT---------------AAAGACCCCTTAACTATGTTTGAGTTAATTATA Plagiothecium_nemorale_Germany GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATCTTCTCCTATTCCATTTTGTATTCGAATAGATCCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAA-TTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATGTTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTATCA----TTGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTTAAA-TAATTTTTTTTAAA-TAATTTTAAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_nemorale_Iran GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATCTTCTCCTATTCCATTTTGTATTCGAATAGATCCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAA-TTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATGTTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTATCA----TTGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTTAAA-TAATTTTTTTTAAA-TAATTTTAAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_nemorale_aquatic_Germany GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATCTTCTCCTATTCCATTTTGTATTCGAATAGATCCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAA-TTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATGTTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTATCA----TTGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTTAAA-TAATTTTTTTTAAA-TAATTTTAAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_piliferum_WA_USA GGAAGGCTAAGGGTTATAGTCGGCGCTTTTATCTAATTTTTTATCTAATTATTTAATTATTGCCTCTATTTCAAAACCGAACATGAAATTTTGATATCATACGGCTCCTTTATGAATTAGAAAAATTTTCTTCTATTATATTTTGTATTCGACTAGATCCATACCATCTATGTTAGTTTTTTCATCATTTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCAATGAAAATCTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA--TTTTTTTTTTTTAATTAAAGATTCAGTTACGAA-AAAAAAAATATTTTGGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTGTCA----TTGTAGGAATTTTGCTTTTCTATTTTAGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTGAAA-TAATTTT---------------AAAGACCCCTTAACTATGTTTAAGTCAATTATA Plagiothecium_platyphyllum_Finland GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGGATTTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATCTTCTCCTATTCCATTTTGTATTCGAATAGATCCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATTTTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTATTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAAAATTTTTGGTTTCTATCCATAGATTTTAAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTATCA----TTGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAGATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTTAAA-TAATTTT---------------AAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_ruthei_Denmark GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGGATTTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATCTTCTCCTATTCCATTTTGTATTCGAATAGATTCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATTTTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAAAATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTATCA----TTGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAGATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTTAAA-TAATTTT---------------AAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_succulentum_Denmark GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATCTTCTCCTATTCCATTTTGTATTCGAATAGATCCATACCATCTATGTTAGTTTATTAATCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAA-TTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATGTTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTCATTTTTATCA----TTGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTTAAA-TAATTTTTTTTAAA-TAATTTTAAAGACCCCTTAACTATGTTTAAGTTAATTATA Plagiothecium_undulatum_Denmark GGAAGGCTAAGGGTTATAGTCGGCGCTTTCATCT--------------------AGTTATTACCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATTTTCTCCTATTCCATTTTGTATTCGAATAGATCCATACCATCTATGTTAGTTTCTTAATCATCTTCATCAGATAACTTCATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTCTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAATATTTTTGGTTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGTTTTTTTCATTTTTGTCA----TTGTAGGAATTTCGCTTTTCTATTTTGGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTCAAAA-TAATTTT---------------AAAGACCCCTTAACTATGTCTAAGTTAATTATA Pseudotaxiphyllum_elegans_Germany GGAAGGCTAAGGGTTATAGTCGGCGCTTTTATTT--------------------AATTATTGCCTCTATTTCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAATTTTATTCTATTCTATTTTGTATTCGAATAAATCCATATCATCTATGTTAGTTTTTTCATCATCTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTT-ACCGAGCTTCAATGAAAATTTTAATAAATTTAGTAAACTAAATTTATTTTATTAGAGCTAAATTGCTTTAA----TTTTTTTTTTAATTAAAGATTCAGTTACGAA--AAAAAAATATTTTGGGTTTCTATCCATAGATTTTTAGCTGAAAAAATTATAATTTCAAAAGAATTCCGTTTTGCTTTTTTTATTTTTGTCA----TTGTAGGAATTTTGCTTTTCTATTTTAGGAAAGATCGTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTGAAA-TAATTTT---------------AAAGACCCCTTAACTATTTTTAAGTTAATTATA Taxiphyllum_sp_Yunnan_China GGAAGGCTAAGGGTTATAGTCGGCGCTTCTATCT--------------------AATCATCGCCTCCATTCCAAAACCGAACATGAAATTTTAATATCATACGGCTCCTTTATGAATTAGAAAAAATTTCTTCTATTATATTTTATATTCGAATAGATCCATACCATCTATGTTAGTTTTTTCATCATTTTCATCAGATAACTTTATAGATGATCCTTTTACAAACTTTTAATAAAAAAATTTATAATTACTTCGTTCTTTATTTCTATTAAAATAAATCATTAGGAAAATATTTTTTTACCGAGCTTCAACGAAAAATTTAATAAATTTAGTAAACTAAATTTATTTTCTTAGAGCTAAATTGCTTTAA---TTTTATTTTTCAATTAAAGATTCAGTTACGAA---AAAATATATTTTGGATTTCTATCCATAGATTTTCAGCTGAAAAAATTATAATTTCAAAAAAATTCCGTTTTACTT-TTTTATTTTTGTCA----TTGTAGGAATTTTGCTTTTCTATTTTAGGAAAGATCTTAAATCTTTTTAGAAATAAAGTTATTGGTCAAAAATTTAAAAATAATTTT---------------AAAGACCCTTTAACTATATCTAAATTAATTATA ; END; [ The following blocks are output data for analysis step 12902 ] BEGIN TREES; TITLE trnG_Wynns_10_Jan_14; LINK TAXA = TaxaForAnalysisStep12902; TREE PAUP_11 = [&R] (Herzogiella_seligeri_Denmark:0.0,((Isopterygiopsis_muelleriana_Scotland:12.0,((((((((((Plagiothecium_cavifolium_Denmark:0.0,Plagiothecium_cavifolium_Germany:0.0,Plagiothecium_cavifolium_Denmark_B:1.0):1.0,(Plagiothecium_nemorale_Germany:0.0,Plagiothecium_nemorale_Iran:0.0,Plagiothecium_nemorale_aquatic_Germany:0.0,Plagiothecium_succulentum_Denmark:0.0):1.0):0.0,((Plagiothecium_denticulatum_Denmark:0.0,Plagiothecium_ruthei_Denmark:0.0):1.0,(Plagiothecium_denticulatum_var_obtusifolium_Germany:0.0,Plagiothecium_platyphyllum_Finland:1.0):1.0):5.0):1.0,(Plagiothecium_latebricola_Denmark:6.0,Plagiothecium_neckeroideum_Yunnan_China:4.0):2.0):0.0,((Plagiothecium_curvifolium_Denmark:0.0,Plagiothecium_curvifolium_Germany:0.0):1.0,Plagiothecium_laetum_Germany:1.0):3.0):3.0,(Plagiothecium_draytonii_HI_USA:0.0,Plagiothecium_undulatum_Denmark:1.0):3.0):2.0,Plagiothecium_euryphyllum_Yunnan_China:7.0):10.0,Plagiothecium_handelii_Yunnan_China:13.0):2.0,Pseudotaxiphyllum_elegans_Germany:8.0):2.0,Plagiothecium_piliferum_WA_USA:5.0):2.0):2.0,Taxiphyllum_sp_Yunnan_China:20.0):8.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70064] END; BEGIN TREES; TITLE trnG_Wynns_10_Jan_14; LINK TAXA = TaxaForAnalysisStep12902; TREE PAUP_12 = [&R] (Herzogiella_seligeri_Denmark:0.0,((Isopterygiopsis_muelleriana_Scotland:12.0,(((((((((Plagiothecium_cavifolium_Denmark:0.0,Plagiothecium_cavifolium_Germany:0.0,Plagiothecium_cavifolium_Denmark_B:1.0):1.0,((Plagiothecium_denticulatum_Denmark:0.0,Plagiothecium_ruthei_Denmark:0.0):1.0,(Plagiothecium_denticulatum_var_obtusifolium_Germany:0.0,Plagiothecium_platyphyllum_Finland:1.0):1.0):5.0,(Plagiothecium_nemorale_Germany:0.0,Plagiothecium_nemorale_Iran:0.0,Plagiothecium_nemorale_aquatic_Germany:0.0,Plagiothecium_succulentum_Denmark:0.0):1.0):1.0,(Plagiothecium_latebricola_Denmark:6.0,Plagiothecium_neckeroideum_Yunnan_China:4.0):2.0):0.0,((Plagiothecium_curvifolium_Denmark:0.0,Plagiothecium_curvifolium_Germany:0.0):1.0,Plagiothecium_laetum_Germany:1.0):3.0):3.0,(Plagiothecium_draytonii_HI_USA:0.0,Plagiothecium_undulatum_Denmark:1.0):3.0):2.0,Plagiothecium_euryphyllum_Yunnan_China:7.0):10.0,Plagiothecium_handelii_Yunnan_China:13.0):2.0,Pseudotaxiphyllum_elegans_Germany:8.0):2.0,Plagiothecium_piliferum_WA_USA:5.0):2.0):2.0,Taxiphyllum_sp_Yunnan_China:20.0):8.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70065] END; BEGIN TREES; TITLE trnG_Wynns_10_Jan_14; LINK TAXA = TaxaForAnalysisStep12902; TREE PAUP_4 = [&R] (Herzogiella_seligeri_Denmark:0.0,((Isopterygiopsis_muelleriana_Scotland:12.0,(((((((((Plagiothecium_cavifolium_Denmark:0.0,Plagiothecium_cavifolium_Germany:0.0,Plagiothecium_cavifolium_Denmark_B:1.0):1.0,((Plagiothecium_denticulatum_Denmark:0.0,Plagiothecium_ruthei_Denmark:0.0):1.0,(Plagiothecium_denticulatum_var_obtusifolium_Germany:0.0,Plagiothecium_platyphyllum_Finland:1.0):1.0):5.0,(Plagiothecium_nemorale_Germany:0.0,Plagiothecium_nemorale_Iran:0.0,Plagiothecium_nemorale_aquatic_Germany:0.0,Plagiothecium_succulentum_Denmark:0.0):1.0):1.0,((Plagiothecium_curvifolium_Denmark:0.0,Plagiothecium_curvifolium_Germany:0.0):1.0,Plagiothecium_laetum_Germany:1.0):3.0):0.0,(Plagiothecium_latebricola_Denmark:6.0,Plagiothecium_neckeroideum_Yunnan_China:4.0):2.0):3.0,(Plagiothecium_draytonii_HI_USA:0.0,Plagiothecium_undulatum_Denmark:1.0):3.0):2.0,Plagiothecium_euryphyllum_Yunnan_China:7.0):10.0,Plagiothecium_handelii_Yunnan_China:13.0):2.0,Pseudotaxiphyllum_elegans_Germany:8.0):2.0,Plagiothecium_piliferum_WA_USA:5.0):2.0):2.0,Taxiphyllum_sp_Yunnan_China:20.0):8.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70057] END; BEGIN TREES; TITLE trnG_Wynns_10_Jan_14; LINK TAXA = TaxaForAnalysisStep12902; TREE PAUP_2 = [&R] (Herzogiella_seligeri_Denmark:0.0,((Isopterygiopsis_muelleriana_Scotland:12.0,(((((((((Plagiothecium_cavifolium_Denmark:0.0,Plagiothecium_cavifolium_Germany:0.0,Plagiothecium_cavifolium_Denmark_B:1.0):1.0,(((Plagiothecium_denticulatum_Denmark:0.0,Plagiothecium_ruthei_Denmark:0.0):1.0,(Plagiothecium_denticulatum_var_obtusifolium_Germany:0.0,Plagiothecium_platyphyllum_Finland:1.0):1.0):5.0,(Plagiothecium_nemorale_Germany:0.0,Plagiothecium_nemorale_Iran:0.0,Plagiothecium_nemorale_aquatic_Germany:0.0,Plagiothecium_succulentum_Denmark:0.0):0.0):1.0):1.0,((Plagiothecium_curvifolium_Denmark:0.0,Plagiothecium_curvifolium_Germany:0.0):1.0,Plagiothecium_laetum_Germany:1.0):3.0):0.0,(Plagiothecium_latebricola_Denmark:6.0,Plagiothecium_neckeroideum_Yunnan_China:4.0):2.0):3.0,(Plagiothecium_draytonii_HI_USA:0.0,Plagiothecium_undulatum_Denmark:1.0):3.0):2.0,Plagiothecium_euryphyllum_Yunnan_China:7.0):10.0,Plagiothecium_handelii_Yunnan_China:13.0):2.0,Pseudotaxiphyllum_elegans_Germany:8.0):2.0,Plagiothecium_piliferum_WA_USA:5.0):2.0):2.0,Taxiphyllum_sp_Yunnan_China:20.0):8.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70055] END; BEGIN TREES; TITLE trnG_Wynns_10_Jan_14; LINK TAXA = TaxaForAnalysisStep12902; TREE PAUP_7 = [&R] (Herzogiella_seligeri_Denmark:0.0,((Isopterygiopsis_muelleriana_Scotland:12.0,(((((((((Plagiothecium_cavifolium_Denmark:0.0,Plagiothecium_cavifolium_Germany:0.0,Plagiothecium_cavifolium_Denmark_B:1.0):1.0,(Plagiothecium_nemorale_Germany:0.0,Plagiothecium_nemorale_Iran:0.0,Plagiothecium_nemorale_aquatic_Germany:0.0,Plagiothecium_succulentum_Denmark:0.0):1.0):0.0,((Plagiothecium_denticulatum_Denmark:0.0,Plagiothecium_ruthei_Denmark:0.0):1.0,(Plagiothecium_denticulatum_var_obtusifolium_Germany:0.0,Plagiothecium_platyphyllum_Finland:1.0):1.0):5.0):1.0,((Plagiothecium_curvifolium_Denmark:0.0,Plagiothecium_curvifolium_Germany:0.0):1.0,Plagiothecium_laetum_Germany:1.0):3.0,(Plagiothecium_latebricola_Denmark:6.0,Plagiothecium_neckeroideum_Yunnan_China:4.0):2.0):3.0,(Plagiothecium_draytonii_HI_USA:0.0,Plagiothecium_undulatum_Denmark:1.0):3.0):2.0,Plagiothecium_euryphyllum_Yunnan_China:7.0):10.0,Plagiothecium_handelii_Yunnan_China:13.0):2.0,Pseudotaxiphyllum_elegans_Germany:8.0):2.0,Plagiothecium_piliferum_WA_USA:5.0):2.0):2.0,Taxiphyllum_sp_Yunnan_China:20.0):8.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70060] END; BEGIN TREES; TITLE trnG_Wynns_10_Jan_14; LINK TAXA = TaxaForAnalysisStep12902; TREE PAUP_5 = [&R] (Herzogiella_seligeri_Denmark:0.0,((Isopterygiopsis_muelleriana_Scotland:12.0,((((((((Plagiothecium_cavifolium_Denmark:0.0,Plagiothecium_cavifolium_Germany:0.0,Plagiothecium_cavifolium_Denmark_B:1.0):1.0,(((Plagiothecium_denticulatum_Denmark:0.0,Plagiothecium_ruthei_Denmark:0.0):1.0,(Plagiothecium_denticulatum_var_obtusifolium_Germany:0.0,Plagiothecium_platyphyllum_Finland:1.0):1.0):5.0,Plagiothecium_nemorale_Germany:0.0,Plagiothecium_nemorale_Iran:0.0,Plagiothecium_nemorale_aquatic_Germany:0.0,Plagiothecium_succulentum_Denmark:0.0):1.0):1.0,((Plagiothecium_curvifolium_Denmark:0.0,Plagiothecium_curvifolium_Germany:0.0):1.0,Plagiothecium_laetum_Germany:1.0):3.0,(Plagiothecium_latebricola_Denmark:6.0,Plagiothecium_neckeroideum_Yunnan_China:4.0):2.0):3.0,(Plagiothecium_draytonii_HI_USA:0.0,Plagiothecium_undulatum_Denmark:1.0):3.0):2.0,Plagiothecium_euryphyllum_Yunnan_China:7.0):10.0,Plagiothecium_handelii_Yunnan_China:13.0):2.0,Pseudotaxiphyllum_elegans_Germany:8.0):2.0,Plagiothecium_piliferum_WA_USA:5.0):2.0):2.0,Taxiphyllum_sp_Yunnan_China:20.0):8.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70058] END; BEGIN TREES; TITLE trnG_Wynns_10_Jan_14; LINK TAXA = TaxaForAnalysisStep12902; TREE PAUP_9 = [&R] (Herzogiella_seligeri_Denmark:0.0,((Isopterygiopsis_muelleriana_Scotland:12.0,(((((((((Plagiothecium_cavifolium_Denmark:0.0,Plagiothecium_cavifolium_Germany:0.0,Plagiothecium_cavifolium_Denmark_B:1.0):1.0,(((Plagiothecium_denticulatum_Denmark:0.0,Plagiothecium_ruthei_Denmark:0.0):1.0,(Plagiothecium_denticulatum_var_obtusifolium_Germany:0.0,Plagiothecium_platyphyllum_Finland:1.0):1.0):5.0,Plagiothecium_nemorale_Germany:0.0,Plagiothecium_nemorale_Iran:0.0,Plagiothecium_nemorale_aquatic_Germany:0.0,Plagiothecium_succulentum_Denmark:0.0):1.0):1.0,(Plagiothecium_latebricola_Denmark:6.0,Plagiothecium_neckeroideum_Yunnan_China:4.0):2.0):0.0,((Plagiothecium_curvifolium_Denmark:0.0,Plagiothecium_curvifolium_Germany:0.0):1.0,Plagiothecium_laetum_Germany:1.0):3.0):3.0,(Plagiothecium_draytonii_HI_USA:0.0,Plagiothecium_undulatum_Denmark:1.0):3.0):2.0,Plagiothecium_euryphyllum_Yunnan_China:7.0):10.0,Plagiothecium_handelii_Yunnan_China:13.0):2.0,Pseudotaxiphyllum_elegans_Germany:8.0):2.0,Plagiothecium_piliferum_WA_USA:5.0):2.0):2.0,Taxiphyllum_sp_Yunnan_China:20.0):8.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70062] END; BEGIN TREES; TITLE trnG_Wynns_10_Jan_14; LINK TAXA = TaxaForAnalysisStep12902; TREE PAUP_1 = [&R] (Herzogiella_seligeri_Denmark:0.0,((Isopterygiopsis_muelleriana_Scotland:12.0,(((((((((Plagiothecium_cavifolium_Denmark:0.0,Plagiothecium_cavifolium_Germany:0.0,Plagiothecium_cavifolium_Denmark_B:1.0):1.0,(((Plagiothecium_denticulatum_Denmark:0.0,Plagiothecium_ruthei_Denmark:0.0):1.0,(Plagiothecium_denticulatum_var_obtusifolium_Germany:0.0,Plagiothecium_platyphyllum_Finland:1.0):1.0):5.0,Plagiothecium_nemorale_Germany:0.0,Plagiothecium_nemorale_Iran:0.0,Plagiothecium_nemorale_aquatic_Germany:0.0,Plagiothecium_succulentum_Denmark:0.0):1.0):1.0,((Plagiothecium_curvifolium_Denmark:0.0,Plagiothecium_curvifolium_Germany:0.0):1.0,Plagiothecium_laetum_Germany:1.0):3.0):0.0,(Plagiothecium_latebricola_Denmark:6.0,Plagiothecium_neckeroideum_Yunnan_China:4.0):2.0):3.0,(Plagiothecium_draytonii_HI_USA:0.0,Plagiothecium_undulatum_Denmark:1.0):3.0):2.0,Plagiothecium_euryphyllum_Yunnan_China:7.0):10.0,Plagiothecium_handelii_Yunnan_China:13.0):2.0,Pseudotaxiphyllum_elegans_Germany:8.0):2.0,Plagiothecium_piliferum_WA_USA:5.0):2.0):2.0,Taxiphyllum_sp_Yunnan_China:20.0):8.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70054] END; BEGIN TREES; TITLE trnG_Wynns_10_Jan_14; LINK TAXA = TaxaForAnalysisStep12902; TREE PAUP_10 = [&R] (Herzogiella_seligeri_Denmark:0.0,((Isopterygiopsis_muelleriana_Scotland:12.0,(((((((((Plagiothecium_cavifolium_Denmark:0.0,Plagiothecium_cavifolium_Germany:0.0,Plagiothecium_cavifolium_Denmark_B:1.0):1.0,(((Plagiothecium_denticulatum_Denmark:0.0,Plagiothecium_ruthei_Denmark:0.0):1.0,(Plagiothecium_denticulatum_var_obtusifolium_Germany:0.0,Plagiothecium_platyphyllum_Finland:1.0):1.0):5.0,(Plagiothecium_nemorale_Germany:0.0,Plagiothecium_nemorale_Iran:0.0,Plagiothecium_nemorale_aquatic_Germany:0.0,Plagiothecium_succulentum_Denmark:0.0):0.0):1.0):1.0,(Plagiothecium_latebricola_Denmark:6.0,Plagiothecium_neckeroideum_Yunnan_China:4.0):2.0):0.0,((Plagiothecium_curvifolium_Denmark:0.0,Plagiothecium_curvifolium_Germany:0.0):1.0,Plagiothecium_laetum_Germany:1.0):3.0):3.0,(Plagiothecium_draytonii_HI_USA:0.0,Plagiothecium_undulatum_Denmark:1.0):3.0):2.0,Plagiothecium_euryphyllum_Yunnan_China:7.0):10.0,Plagiothecium_handelii_Yunnan_China:13.0):2.0,Pseudotaxiphyllum_elegans_Germany:8.0):2.0,Plagiothecium_piliferum_WA_USA:5.0):2.0):2.0,Taxiphyllum_sp_Yunnan_China:20.0):8.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70063] END; BEGIN TREES; TITLE trnG_Wynns_10_Jan_14; LINK TAXA = TaxaForAnalysisStep12902; TREE PAUP_8 = [&R] (Herzogiella_seligeri_Denmark:0.0,((Isopterygiopsis_muelleriana_Scotland:12.0,((((((((Plagiothecium_cavifolium_Denmark:0.0,Plagiothecium_cavifolium_Germany:0.0,Plagiothecium_cavifolium_Denmark_B:1.0):1.0,((Plagiothecium_denticulatum_Denmark:0.0,Plagiothecium_ruthei_Denmark:0.0):1.0,(Plagiothecium_denticulatum_var_obtusifolium_Germany:0.0,Plagiothecium_platyphyllum_Finland:1.0):1.0):5.0,(Plagiothecium_nemorale_Germany:0.0,Plagiothecium_nemorale_Iran:0.0,Plagiothecium_nemorale_aquatic_Germany:0.0,Plagiothecium_succulentum_Denmark:0.0):1.0):1.0,((Plagiothecium_curvifolium_Denmark:0.0,Plagiothecium_curvifolium_Germany:0.0):1.0,Plagiothecium_laetum_Germany:1.0):3.0,(Plagiothecium_latebricola_Denmark:6.0,Plagiothecium_neckeroideum_Yunnan_China:4.0):2.0):3.0,(Plagiothecium_draytonii_HI_USA:0.0,Plagiothecium_undulatum_Denmark:1.0):3.0):2.0,Plagiothecium_euryphyllum_Yunnan_China:7.0):10.0,Plagiothecium_handelii_Yunnan_China:13.0):2.0,Pseudotaxiphyllum_elegans_Germany:8.0):2.0,Plagiothecium_piliferum_WA_USA:5.0):2.0):2.0,Taxiphyllum_sp_Yunnan_China:20.0):8.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70061] END; BEGIN TREES; TITLE trnG_Wynns_10_Jan_14; LINK TAXA = TaxaForAnalysisStep12902; TREE PAUP_6 = [&R] (Herzogiella_seligeri_Denmark:0.0,((Isopterygiopsis_muelleriana_Scotland:12.0,((((((((Plagiothecium_cavifolium_Denmark:0.0,Plagiothecium_cavifolium_Germany:0.0,Plagiothecium_cavifolium_Denmark_B:1.0):1.0,(((Plagiothecium_denticulatum_Denmark:0.0,Plagiothecium_ruthei_Denmark:0.0):1.0,(Plagiothecium_denticulatum_var_obtusifolium_Germany:0.0,Plagiothecium_platyphyllum_Finland:1.0):1.0):5.0,(Plagiothecium_nemorale_Germany:0.0,Plagiothecium_nemorale_Iran:0.0,Plagiothecium_nemorale_aquatic_Germany:0.0,Plagiothecium_succulentum_Denmark:0.0):0.0):1.0):1.0,((Plagiothecium_curvifolium_Denmark:0.0,Plagiothecium_curvifolium_Germany:0.0):1.0,Plagiothecium_laetum_Germany:1.0):3.0,(Plagiothecium_latebricola_Denmark:6.0,Plagiothecium_neckeroideum_Yunnan_China:4.0):2.0):3.0,(Plagiothecium_draytonii_HI_USA:0.0,Plagiothecium_undulatum_Denmark:1.0):3.0):2.0,Plagiothecium_euryphyllum_Yunnan_China:7.0):10.0,Plagiothecium_handelii_Yunnan_China:13.0):2.0,Pseudotaxiphyllum_elegans_Germany:8.0):2.0,Plagiothecium_piliferum_WA_USA:5.0):2.0):2.0,Taxiphyllum_sp_Yunnan_China:20.0):8.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70059] END; BEGIN TREES; TITLE trnG_Wynns_10_Jan_14; LINK TAXA = TaxaForAnalysisStep12902; TREE PAUP_3 = [&R] (Herzogiella_seligeri_Denmark:0.0,((Isopterygiopsis_muelleriana_Scotland:12.0,((((((((((Plagiothecium_cavifolium_Denmark:0.0,Plagiothecium_cavifolium_Germany:0.0,Plagiothecium_cavifolium_Denmark_B:1.0):1.0,(Plagiothecium_nemorale_Germany:0.0,Plagiothecium_nemorale_Iran:0.0,Plagiothecium_nemorale_aquatic_Germany:0.0,Plagiothecium_succulentum_Denmark:0.0):1.0):0.0,((Plagiothecium_denticulatum_Denmark:0.0,Plagiothecium_ruthei_Denmark:0.0):1.0,(Plagiothecium_denticulatum_var_obtusifolium_Germany:0.0,Plagiothecium_platyphyllum_Finland:1.0):1.0):5.0):1.0,((Plagiothecium_curvifolium_Denmark:0.0,Plagiothecium_curvifolium_Germany:0.0):1.0,Plagiothecium_laetum_Germany:1.0):3.0):0.0,(Plagiothecium_latebricola_Denmark:6.0,Plagiothecium_neckeroideum_Yunnan_China:4.0):2.0):3.0,(Plagiothecium_draytonii_HI_USA:0.0,Plagiothecium_undulatum_Denmark:1.0):3.0):2.0,Plagiothecium_euryphyllum_Yunnan_China:7.0):10.0,Plagiothecium_handelii_Yunnan_China:13.0):2.0,Pseudotaxiphyllum_elegans_Germany:8.0):2.0,Plagiothecium_piliferum_WA_USA:5.0):2.0):2.0,Taxiphyllum_sp_Yunnan_China:20.0):8.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70056] END;