#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 24, 2024; 19:31 GMT TreeBASE (cc) 1994-2008 Study reference: Vasco-palacios A.M., Lopez-q C., Franco-molano A.E., & Boekhout T. 2014. Austroboletus amazonicus sp. nov. and Fistulinella campinaranae var. scrobiculata, two commonly occurring boletes from a forest dominated by Pseudomonotes tropenbosii (Dipterocarpaceae) in Colombian Amazonia. Mycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15343] [ The following blocks are input data for analysis step 13069 ] BEGIN TAXA; TITLE TaxaForAnalysisStep13069; DIMENSIONS NTAX=20; TAXLABELS Austroboletus_amazonicus_KF937307 Austroboletus_amazonicus_KF937308 Austroboletus_amazonicus_KF937309 Austroboletus_fusisporus_AB509830 Austroboletus_fusisporus_JX889719 'Austroboletus novae-zelandiae HM060327' Austroboletus_rustropii_JN168683 Austroboletus_subvirens_JN378518 Boletaceae_sp._511AMV_root_KF878352 Boletellus_ananas_JN168685 Boletellus_dicymbophilus_KC155373 Clavulina_amazonica_KF937313 Fistulinella_campinaranae_var._scrobiculata_KF937331 Fistulinella_campinaranae_var._scrobiculata_KJ195891 Fistulinella_gloeocarpa_GQ981503 Russula_sp._KF937358 Xerocomus_cyaneibrunnescens_JQ751259 Xerocomus_parvogracilis_JQ751261 Xerocomus_potaroensis_JQ751260 Zangia_citrina_HQ326917 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M20848] TITLE Fistulinella_and_Austroboletus_species._Maximum_likelihood_tree_based_on_ITS_sequences; LINK TAXA = TaxaForAnalysisStep13069; DIMENSIONS NCHAR=430; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Austroboletus_amazonicus_KF937307 TTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGA----ATCAT-CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTGAATTCTTCAACCAA--TGTC-TT--GTTGAC----ATGGATTGGACTTGGAGGTT-GCTGGCAAGTAGTTA----GTGCTCGG--TCAGCTCTTCTGAAATGCATTAGCAAAGAT-----CGGGTTTCGAGTGCAAGTCGGATCGATTTCCTCTAGGGGTGTCGTCGACACACCAACTAGCCTTTGATGTGATAATGATCATC---------GTAGTGAATTTTTGGTATTGCAC------GAACTTGCTCTCGCTT-------CTAATT-ACAAGTCACCAAGGGGGAAAAGGGCATTGCTTGCTTAGCTACTAGTC Austroboletus_amazonicus_KF937308 TTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGA----ATCAT-CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTGAATTCTTCAACCAA--TGTC-TT--GTTGAC----ATGGATTGGACTTGGAGGTT-GCTGGCAAGTAGTTA----GTGCTCGG--TCAGCTCTTCTGAAATGCATTAGCAAAGAT-----CGGGTTTCGAGTGCAAGTCGGATCGATTTCCTCTAGGGGTGTCGTCGACACACCAACTAGCCTTTGATGTGATAATGATCATC---------GTAGTGAATTTTTGGTATTGCAC------GAACTTGCTCTCGCTT-------CTAATT-ACAAGTCACCAAGGGGGAAAAGGGCATTGCTTGCTTAGCTACTAGTC Austroboletus_amazonicus_KF937309 TTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGA----ATCAT-CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTGAATTCTTCAACCAA--TGTC-TT--GTTGAC----ATGGATTGGACTTGGAGGTT-GCTGGCAAGTAGTTA----GTGCTCGG--TCAGCTCTTCTGAAATGCATTAGCAAAGAT-----CGGGTTTCGAGTGCAAGTCGGATCGATTTCCTCTAGGGGTGTCGTCGACACACCAACTAGCCTTTGATGTGATAATGATCATC---------GTAGTGAATTTTTGGTATTGCAC------GAACTTGCTCTCGCTT-------CTAATT-ACAAGTCACCAAGGGGGAAAAGGGCATTGCTTGCTTAGCTACTAGTC Austroboletus_fusisporus_AB509830 TTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGA----ATCAT-CGAATCTTTGAACGCACCTTGCGCACTTTGGTATTCCAAAGTGCATGCCTGTTTGAGTGTCATTTCTTTTAT-CAACTCCCTTATCTTT--ATCGAT-AATCGAGCTTGGACTTGGAAGTT-GCTGGCGTCCA-TTA------ACCATG--TCAGCTCTTCTCAATTGCATTAGCAA----------TCGCTTACAGTGCAAGTCAACTC----------------CT---TGACACACCAATTAGCCTTTGACATGGTAATCATAATCCCATCTGTCATAGTGAATTTTTGGTATTGCTC------ATCATTAGCATTGCTT-------CTAATCCTAATCCTAGCACTTAGTTACTAG--TTGGCTCTAATCATCAGCTGAC Austroboletus_fusisporus_JX889719 TTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGA----ATCAT-CGAATCTTTGAACGCACCTTGCGCACTTTGGTATTCCAAAGTGCATGCCTGTTTGAGTGTCATTTTATTTAT-CAACTCCCTTATCCTT--ATCGAT-AATCGAGCTTGGACTTGGAAGTC-GCTGGCGTCCA-TTA------GGCTTA--TCAGCTCTTCTCAATTGCATTAGCAA----------TCGCTTACAGTGCAAGTCAACTC----------------ATCATTGACACACCAATTAGCCTTTGACATGGTAATCATAATCCTATCTGTCATAGTGAATTTTTGGTATTGCTC------ATCTTTAGCATTGCTT-------CTAATCCTAATGCTAGCACTTAGTTACTAG--TTGGCTTTCATCATTAGCTGAC 'Austroboletus novae-zelandiae HM060327' TTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGA----ATCAT-CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTGAATTCTCAACTCATGCTCATGTC--TTACATGACATGGGATTGGACTTGGAGGTT-GCTGGCA-GCATATA-----TAGCTTA--TCAGCTCTTCTGAAATGCATTATCGA---------TTGGTTTCAAGTGCAAGTCAGGTT----------------------GACGCACCAATTAGCCTTTGACATGATAATCATCTGTC--------GTAGTGAATTTTTGGTATTGCAC----GAACACAGACTATCGCTT-------CTAATT--AGTATTAGTATACATATACTATG-GCTACTTGACCTCAAATCAGGT Austroboletus_rustropii_JN168683 TTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGA----ATCAT-CGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTGAATTCT-CAACCATGTTGTC-TT--GTTGACTGACATGGATTGGACTTGGAGGTTTGCTGGCAGGTACACAAGTTGTACTTT---TCAGCTCTTCTGAAATACATTAGCGA---------TGGGTTTCGAGTGCAAGTCAATTC----CCTTTAAGAGAGGGGGTCGACACACCAACTAGCCTTTGATGTGATAATGATCATC---------GTAGTGAATTTTTGGTATTGCATCTCAATAGACTTA-TATCGCTT-------CTAATTTACAAGT-----ACAAGGAAAAG-----TGTGTGCTTAGCTACTAGTC Austroboletus_subvirens_JN378518 GTGTAGTTCCTGGTGGATGGGTCAGCATCATTTTTTTATTACTGTATAAGGGCAAAAGGAAATGTAGCACTCTTA-GGATGTGTGTTATAGACTTTTGTTAGATGCAGTAGTTGGGACTGAGGTACTCTGTGCACGATTCAA{CT}-----TAGGATTTGTGCAAGGGAT-GCTGGC--ATAATGG------CATTCA--TCGACCCGTCT-TGAAACACGGACCAAGGA--------GTCTAACATGCATGCGAGT-AT------------------TTGGGTAGGAAAACTCGAGTGCGAAATGAAAGTGATAAAAATATGGTTGAGACCTCTGTTAAGGAGGGCATCAA{CT}GCCCAGACTAGAGTCTAGTAG-----ACAATGGATCTGCGGTAGAG---------------------------------- Boletaceae_sp._511AMV_root_KF878352 TTGCGATAAGTAATGTGAATTGCAGATTTTCCGTGA----ATCAT-CGAATCTTTGAACGCACCTTGCGCTCCTGGGTATTCCTAGGAGCATGCCTGTTTGAGTGTCAATTAATTGAT-CAACCATGTCA--AGTTGATTGCTTGACTTGGGTTGGAGTTGGGAGTT-GCTGGCGCCTT---TG-----AGGATG--TCAGCTCTCCTGAAAAGGATTAGTGGAGGGA------TGTAATTCT----ACTCTACTCT-------------------TGGGCGTGATAATGATCGTCCTAGA--GCGGGGGAACGA--------AAGGATTGAACTCT--CTGCTTCGAACTGAATAGCGATGTTCAAGG--------TAAAG-ACATGCTAGTTATTAGCTTTGG-CGAGGACAGCATGAATGAACTGAG Boletellus_ananas_JN168685 GTGCACTTCCTGTCCGACGGGTCAGCATCAGTTTTG-GTCGTCGTACAAGGGCGAGGGGAA-CGTGGCACTCTTCCGGGAGTGTGTTATAGCCTTTCGTCGCATGCGTCGGCAGGGACTGAGGAACTCGG--CATGG--CCCT-----TTGTGTCTGTGTCTAGGAT-GCTGGC--ATAATGG------CGTCAA--GCGACCCGTCT-TGAAACACGGACCAAGGA--------GTCCAACATGCCTGCGAGT-GT------------------TTGGGTG-CAAAACCCGAGTGCAAAACGAAAGTGATC--------ATCGAGACCTCCGTCATGGAGGGCACCGACGCCCAGACCTGAGTCC--TTG-----ACGACGGTCCTGCGGTAGAGCATGCATGTTGGGACCCGAAAGATGGTGAACTAT Boletellus_dicymbophilus_KC155373 TTGCGATAAGTAATGTGAATTGCAGATTTCCAGTGA----ATCAT-CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATT-GAATTCT-CAACCATGTCTTGATTCGTTTCGAGCGCATGGCTTGGAGTTGGGAGCT-GCTGGCAGCCC---A-------GGCTG--TCGGCTTTCCTGAAATGCATTAGCAAAAGGTCG--CTGGTCTTTAG-ACATGCACGGCCT-CGGACGTGATAATGATCGTCCTCGC-TGGAGTGTCTTTTGATCGTGCACAGAACGGCCTATTGCTTCTAGT--CTGCACGACGTCGCTCGACACTATTAGTTCGGTCGCAAGA-----CTGGCGAACGTGTAGGGCAACCTCTCGCTTTGGATACTTGACCTCAAATCAGGT Clavulina_amazonica_KF937313 ATGCGATAAGTAATGTGAATTGCAGAATT-CAGTGA----ATCAT-CGAATCTTTGAACGCACCTTGCGCTCCCTGGTATTCCGGGGAGCACGCCTGTTCGAGTGTCGTGAAATTTCTCAAGCTGAGATGTTTTT----CTT------AGTCTTGGTGTT--GGGCT--CTGCCGTGT---CT---CTTATTGGG--ATGGCTGGCCTTAAAAGCATTAGCTGA---------CTCTCATGTGAATAAATTGGTTC-----------------TACTCGGCGTGATTAATGATTTTGACCGCTGAGGACATCTTTG-----GCGATGGCCAGTTCTCATTTGAGTTGCTT-CTAATCTTGGTTGTACGG-------ATTGTTAGTCTGTATGCCTCGTTTTTCAG------ATTTGACCTCGAATCAGGT Fistulinella_campinaranae_var._scrobiculata_KF937331 GCTCGTCTATTAGATGGTGTTGAAGAATCAGAATCA--TCACTAT-CGAACGCGAGGGTAGATATA-CACTAT----GGTTTTGGCTATTAG--ATGGTCGAAAGGATCATGCGAACGCAAAGCATGTAGGACTTGT--CTAC-----TAGTTAGTCTTTCGAAAAG-GCTGACGAACGCAAG------AAACAT--GTGCATTGACTATTAGATGAATGCTAGAGAC------TGTCGAACGTGCAAGCAAGTGGT------------------GTCCACGTCCAGACTAGAGTTTGCATGTTAGATGGGAGGTCAAGAACCTATACGAACGCAAGGATGTATATT-ATGCTTATGCTT--GTCCACTAG-----CCAGCATTCATGCTGGCGAAGGCAAGTATGTATGTATGTATGTATGTGCTTGAC Fistulinella_campinaranae_var._scrobiculata_KJ195891 GCTCGTCTATTAGATGGTGTTGAAGAATCAGAATCA--TCACTAT-CGAACGCGAGGGTAGATATA-CACTAT----GGTTTTGGCTATTAG--ATGGTCGAAAGGATCATGCGAACGCAAAGCATGTAGGACTTGT--CTAC-----TAGTTAGTCTTTCGAAAAG-GCTGACGAACGCAAG------AAACAT--GTGCATTGACTATTAGATGAATGCTAGAGAC------TGTCGAACGTGCAAGCAAGTGGT------------------GTCCACGTCCAGACTAGAGTTTGCATGTTAGATGGGAGGTCAAGAACCTATACGAACGCAAGGATGTATATT-ATGCTTATGCTT--GTCCACTAG-----CCAGCATTCATGCTGGCGAAGGCAAGTATGTATGTATGTATGTATGTGCTTGAC Fistulinella_gloeocarpa_GQ981503 TTGCGATAAGTAATGTGAATTGCAGATTTTCCGTGA----ATCAT-CGAATCTTTGAACGCACCTTGCGCTCCTGGGTATTCCTAGGAGCATGCCTGTTTGAGTGTCAATTAAATCAT-CAACCATGTCA--GCTTGATCGCTTGACTTGGCTTGGACTTGGGGGTT-GCTGGCGCTGC---AA-----GGCCTG--CCAGCTCTCCTGAAAAGCATTAGTGAAGGGA------TATGTGTCGCA--AGTCTACCCT--------------------GGGCGTGATAATGATCGTCCTAAACGATAGACGAAGCA--------GGACATAATGAACT--TTGCTTCCAACTTCATACCCATATTCAAGG--------TGGAC-GCATGCTAGTTATTAGCTTCAG-CGAGGGCAGCATGAATAAACCTTT Russula_sp._KF937358 ATGCGATACGTAATGTGAATTGCAGAATT-CAGTGA----ATCAT-CGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAACACCCTCAACCTTCTTGGTTTCT----TGACCAGGAAGGCTTGGACTTTGGAGGT--TTTCCTTGCTGGCT---TGTATCTAG--TCGGCTCCTCCTAAATGAATTAGTGGG---------ATTTACTTTGCTGATCCTTGACG-----------------TGATAAGTATGTTTCTACGTCTTGGTC-TTCACAATGTCACCT-----GCTTCAAACTGTCTTTAAACAAAAGAC-----AATGTTCGAGTCACC---------TCGTGAGTC-GTGGCTTGACCTCACCAA------CCTTGACCTCAAATCGGGT Xerocomus_cyaneibrunnescens_JQ751259 GTGTACTTCCCGCTCGACGGGTCAGCATCAGTTTCG-GTTGCCGTACAAGGGCAAAGGGAA-TGTGGCACTCTTC--GGAGTGTGTTATAGTCCTTCGTCGTATGCGGCGCTCGGGACTGAGGAACTCAG--CACGG--CTTT--------CGTCTGTGCTTAGGAT-GCTGGC--ATAATGG------CCTTAA--GCGACCCGTCT-TGAAACACGGACCAAGGA--------GTCTAACTTGCCTGCGAGT-GT------------------TTGGGTG-GCAAACTCGAGCGCGAAATGAAAGTGAAA--------GTCGAGACCTCTGTCGTGGAGGGCACCGACGCCCGGACCTGAGTCT--TCG-----ACGACGGATCTGCGGTAGAGCATGCATGTTGGGACCCGAAAGATGGTGAACTAT Xerocomus_parvogracilis_JQ751261 TTGCGATAAGTAATGTGAATTGCA?ATTTTCAGTGA----ATCAT-CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCA-TTAAATTCT-CAACCATGTCCTTGATCGATTTCAAGACATGGCTTGGAGTTGGGAGTTTGTCGGCATCG----AA-----AGATGG--TCGACTCTCCTGAAATGTATTAGCAAAAGGAGGCTCTTGAGCATCGCATGGGCTAGCCTT-------------------TCGACGTGATAATGATCGTCGTGGTTGGGTCATGTTGCAT------CAAGAATTCAGCTCTGCTTGCTTCCAAC---AAACCCATGGACAGG----------AATT-CGACTCTGGACTCGAGTCCAAGGTTCAAGTCCTA?CTACTAGTCGGC Xerocomus_potaroensis_JQ751260 GTGCATTTCCTGGCGGACGGGTCAGCATCAGTTTCG-GTCGTCGTACAATGGTAAAGGGAA-CGTGGCACCTCTT--GGGGTGTGTTATAGCCTTTTGTCGGATGCGTCGGTCAGGACTGAGGAACTCGG--CACGAT-CCCT-----TTGGATTTGTGTCTAGGAT-GCTGGC--ATAATGG------CCTTAA--GCGACCCGTCT-TGAAACACGGACCAAGGA--------GTCTAACATGCCTGCGAGT-GT------------------TTGGGTGTGTAAACTCGAGCGCGTAATGAAAGTGAAA--------GTCGAGACCTCTGTCGTGGAGGGCATCGACGCCCGGACCTGAGTCT--TTG-----ACAAAGGATCTGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTAT Zangia_citrina_HQ326917 ACGCAAACGTTAATCGTCATAATCAGGCGTAAAGGG--TGTGTAGGCGGCTTTAAAAAAATATAATAAGTATTATATTTTTTATAGTAAAAATTATATTTAAATAAAAGCTAGAATCTAAAAGAGGGTAA---GCTAAACAACATAATTAATTGGGACTGACAACTT--ATAATAATGTGGAGTACTAAAGGTTAAAGCTATTTATCTACTTAAGATTGACGCTGAGA-------AACGAAGGGGAGAATAAGAAAC--------------TTAGATTAGAGACCTAATTATCTCTCTCAGTCAACGATGAATGGTAGTTATTAAAAACTTTTATAATATTAGTAACGAGGTTAACACGATGACCATTCCGCCTTGTTAGTAAGACTGCAAAGTTGAAAACAAAAA-AATTAGTCGGTCTTGAAGCAAAC ; END; [ The following blocks are output data for analysis step 13069 ] BEGIN TREES; TITLE Austroboletus_amazonicus_sp._nov._and_Fistulinella_campinaranae_var._scrobiculata_ITS; LINK TAXA = TaxaForAnalysisStep13069; TREE Imported_tree_0 = [&R] ((Clavulina_amazonica_KF937313:0.23607266,Russula_sp._KF937358:0.39421181)0.8840:0.09102244,((Zangia_citrina_HQ326917:1.70208605,((Fistulinella_campinaranae_var._scrobiculata_KF937331:0.0,Fistulinella_campinaranae_var._scrobiculata_KJ195891:0.0)0.9870:0.38921213,(Xerocomus_potaroensis_JQ751260:0.05625456,(Austroboletus_subvirens_JN378518:0.20923877,(Boletellus_ananas_JN168685:0.10720964,Xerocomus_cyaneibrunnescens_JQ751259:0.05403709)0.4700:0.04312856)0.0330:0.0)0.9910:0.97682882)0.9720:1.01216464)0.9780:0.93884736,((Xerocomus_parvogracilis_JQ751261:0.14933541,(Boletaceae_sp._511AMV_root_KF878352:0.12748044,Fistulinella_gloeocarpa_GQ981503:0.08584525)0.9880:0.0996895)0.9420:0.15191805,(Boletellus_dicymbophilus_KC155373:0.23566642,((Austroboletus_fusisporus_AB509830:0.02654248,Austroboletus_fusisporus_JX889719:0.00394366)1.0000:0.14809516,('Austroboletus novae-zelandiae HM060327':0.08966768,(Austroboletus_rustropii_JN168683:0.02454419,(Austroboletus_amazonicus_KF937309:0.0,(Austroboletus_amazonicus_KF937307:0.0,Austroboletus_amazonicus_KF937308:0.0)0.3080:0.0)1.0000:0.04381948)0.9330:0.03694734)0.7870:0.0336386)0.8910:0.0864191)0.5800:0.03280569)0.7260:0.15127913)0.8840:0.01401646); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70598] END;