#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 11, 2024; 19:56 GMT

TreeBASE (cc) 1994-2008

Study reference:
Weir A., & Hughes M. 2002. The taxonomic status of Corethromyces bicolor from New
Zealand, as inferred from morphological, developmental, and molecular studies.
Mycologia, 94(3): 483-493.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S825]

[ The following blocks are input data for analysis step 1334 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep1334;
        DIMENSIONS NTAX=11;
        TAXLABELS
            Aureobasidium_pullulans
            Botryandromyces_ornatus
            Ceratomyces_C3ABI
            Corethromyces_bicolor
            Corethromyces_sp._1
            Rhachomyces_philonthinus
            Rhadinomyces_sp._1
            Rickia_passalina
            Stigmatomyces_hydrelliae
            Stigmatomyces_rugosus
            Stigmatomyces_scaptomyzae
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M244]

	TITLE 18S_rDNA;
	LINK TAXA = TaxaForAnalysisStep1334;
	DIMENSIONS NCHAR=525;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=. GAP= -;

MATRIX
[                                     10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520     ]
[                                      .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .     ]
Aureobasidium_pullulans       AGCAACCCCAACTTC--GGAAGGGGTGTATTTATTAGATAAA-AAACAACTTTAGGATAGTGGCCTACCAAACGGGTAACGGGGAATTAGGGTTCTATTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACAC-GGGGAGGTAGTGACAATAAATACTGATACAGGGCTCTTTTGGG-TCTTGTAATTGGAATGAGTACAATTTAAATCCCTTAAAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACCTTGGGCCTGGCTGGCCGGTCCGCCTCACCG-CGTGTACTGG-TCCGGCCG-GGCCTTTCCTTCTGGGGAGCCGCATGCCCTTCACT-GGGCGTGTCGGGGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGCATTAGCATGGAATAATTGGTTTCTAGGACCGCCGTAATGATTAATGAAAGCATTTGCCAAGGATGTTTTCAGAAAGGGGAT
Botryandromyces_ornatus       AGCAATCCCGACGCA--AGAAGGGGTGTGTTTATTAGATCGC-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACAC-GGGGAAGTAGTGACAAGAAATACCGATACAGGGCCTCTTTCGG-TCTTGTGATTGGAATGAGTACAATTTAAATCCATTAAAGCATACATTAAAGTTGTTGCAGTTAAAACGCCCGTAGTTGAAACTCGGGCCTGGCCCGCCGGTCCGCCTCACCG-CGTGCACTGG-TTGGGCCG-GGTCTTTCTCCCTGGAAATCCGCATGGCCTTCACT-GGCTGTGCCGGGGGACCAGGACTGTTACTGTGAAAAAATCAGAGTGTTCAAAGCAGGCCTTTGCTCGCCTTAGCATGGAATAATTGGTTTTCGCGACCGTCGTAATGATTAATGAAAGCATTTGCCATGGATGTTTTCAGAAAGGGGAT
Ceratomyces_C3ABI             AGCAACCCCGACTCA--CGAAGGGGTGTATTTATTAGATAGC-AAGCAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACAC-GGGGAGGTAGTGACAAGAAATACTGATACAGGATTCTTTTGGA-TCTTGTAATTGGAATGAGTACAATTTAAACCCATTAAAGCGTATATTAAAGTTGTTGCAGTTAAAACGCTCGTAGTTGAACTTTGGGCCTGGCTGGCCGGTCTGCCTCACCG-CGTGTACTGG-TCTGGCTG-GGTCTTTCCTCTTGGGGAGCTGCATGCCCTTCACT-GGGTGTGCCAGGGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTTGTATTAGCATGGAATAATTGGTTTCTAGGACCGCCGTAATGATTAATGAAAGCATTTGCCAAAGATGTTTTCAGAAAG-GGAT
Corethromyces_bicolor         AGTAAACTCGACGCA--AGTAGAGAGGTATTTATTAGATATC-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATAAGGGTTCGATTCCGGAGAGGGGGCGACC---TCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACAT-GGGGAG-TAGTGACAAGAAATAACGATACAGGGTCCTTACGGA-TCTTGTGATTGGAATGAGTACAATTTAAACCCATTAAAGCGTATATTAAAGTTGTTGCAGTTAAAACGCTCGTAGTCGAACTTCGGGCCTGGTCGGCCGGTCCGCCTCCTCGGTATGTACTGGCTCC-ATCGGGGTCTTTCCCCCTGGATAAGCTCCTGTCTCCTATA-GTGTGTGTTGGGGAACCGAGACTT--ACACTGAGAAAATTAGAGTGTTCAAACGCGGCCT--GCTCGCTTTACCCTGGAG-AATTGGTTT-CCGAACCACCGTAA-----AATGAAAGCATTTGCCACGGAT-TTTTCAGAAAGGGGAT
Corethromyces_sp._1           AGCAATCTCGACGCA--AGTAGAGATGTATTTATTAGATATC-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACAC-GGGGAGGTAGTGACAAGAAATACCGATACAGGGTCCTTTCGGA-TCTTGTGATTGGAATGAGTACAATTTAAACCCATTAAAGCATACATTAAAATTGTTGCAGTTAAAACGCCCGTAGTTGAAGTTTGGGCTCGGTCAGCCGGTCCGCCTCACCG-CGTGTACTGG-TGTGATTG-GGTCTTTCTTCCTGGAGAACCGCATGGGCTTTATT-GTCTGTGTTGGCGAACCAGGACTTTTACTTTGAGAAAATTAGAGTGTTCAAAGCAGGCATTTGCTCGTCTTAGCATGGAATAATTGGTTT-GACAACCACCGTAATGATTAATGAAAGCATTTGCCATGGATGTTTTCAGAAAGGGGAT
Rhachomyces_philonthinus      AGTTCACTCAACTCA--CGGCGAGGTGTATTTATTAGATATC-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACAC-GGGGAAGTAGTGACAAGAAATACCGATACAGGGTCCTTTCGGA-TGTTGTGATTGGAATGAGTACAATTTAAACCCATTAAAGCATACATTAAAGTTGTTGCAGTTAAAACGCCCGTAGTTGAAATTTGGGTCTGGTCCTCTGGTCCGCCTCACCG-CGAGCACTGG-CAGGATTG-GGTCTTTCTTTCTGGAGAACTGCATGCCCTTCACT-GGGTGTGTCAGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTTGCTCGCCTTA-CATGGAATAATTGGTTTTCACGACCGCCGTAATGATTGATGAAAGCATTTGCCATGGATGTTTTCA-AAAG-GGAT
Rhadinomyces_sp._1            AGCAATCTCGACTCA--CGAAGAGATGTATTTATTAGATATC-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAAGTACCCAATCCCGACAC-GGGGAGGTAGTGACAAGAAATACCGATACAGGTCTTTTT-GGA-TCTTGTGATTGGAATGAGTACAATTTAAACCCATTAAAGCATACATTAAAGTTGTTGCAGTTAAAACGCCCGTAGTTGAAGTTTGGGCTTGGTTGGCCGGTCCGCCTCACCG-CGAGTACTGG-TGCGATTG-GGTCCTTCTTCCTGGAGATCTGCACTGTCTTTATT-GATGGTGTTAGGGAACCAGGGCTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTTGCTCGTCTTAGCATGGAATAATTGGTTTTCACGACCACCGTAATGATTAATGAAAGCATTTGCCATGGATGTTTTCAGAAAGGGGAT
Rickia_passalina              AGCAAACTCGACTCA--CGA-G-GGTGTATTTATTAGATCGC-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACAC-A-GGAGGTAG-GACAACAAATACCGGTACAGGGCT-TTTTGGG-TCTTGTAATTGGAATGAGTACAA-CTAAACCCATTAAAGCATACATTAAA----T-GC-GTTAA---GCCCGCAGTTGAAA-TTGGGCTTGGCA--GCGGTCTGCCTCA-CG-CTAGTACTGG-TATGGCCG-GGCCTTTCT-CCTGGAGAACT-CATGCTCTTTATT-GAGTGTGTTAGGGAACCAGGACTTTTACTTTG-GAAAATTAGAGTGTTCAAAGCAGGCTCAT--TCGCCTTAGCATGGAATAATTGGTTTCAAGG-CTGC-GTAATGATTAATGAAAGCATTTGCCAAGGATGTTTTCAGAAAGGGGAT
Stigmatomyces_hydrelliae      AGCAAGCTCGACTTA--CGAAGGGGTGTATTTATTAGATATT-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACAC-GGGGAAGTAGTGACAAGAAATACTGATACAGGGTCCTATAGGA-TCTTGTAATTGGAATGAGTACAATTTAAACCCATTAAAGCATACATTAAAATTGTTGCAGTTAAAACGCCCGTAGTTGAAGTTTGGACTTGGTCAGCCGGTCTGCCTCACCG-CGAGTACTGG-TGTGATTG-AGTCTTTCTTCCTGGAAAACTGGATGCCCTTTATT-GGGTGTTTTAGAGGACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTTGCTCGCCTTAGCATGGAATAATTGGTTTATACGACTACCGTAATGATTGATGAAAGCATTTGCCATGGATGTTTTCAGAAAGGGGAT
Stigmatomyces_rugosus         AGCAACTCCAACTCA--TGAAGGAGTGTATTTATTAGATATC-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACAC-GGGGA-GTAGTGACAAGAAATACTGATATAGGGTCCTATTGGA-TCTTGTGATTGGAATGAGTACAATTTAAACCCATTAAAGCATACATTAAAATTGTTGCAGTTAAAACGCCCGTAGTTGAAGTTTGGACCTGGTTAACTGGTCCGCCTCACCG-CGAGAACTGG-TGTGATTG-GGTCTTTCCTCTTGAGGTGCTGCATGCTCTTAACT-GGGTGTGTTAGTGATTCA-GACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTTGCTCGCCTTAGCATGGAATAATTGGTTTTCACGACTACTGTAATGATTGATGAAAGCATTTGCCATGGATGTTTTCAGAAAGGGGAT
Stigmatomyces_scaptomyzae     AGCAAATCCGACTTA--GCAAGGAGTGTATTTATTAGATATTTAAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACAC-GGGGAAGTAGTGACAAGAAATACTGATACAGGGTCCTATCGGA-TCTTGTGATTGGAATGAGTACAATTTAAACCCATTAAAGCATACATTAAAATTGTTGCAGTTAAAACGCCCGTAGTTGAAGTTTGGATTTAATCGCCCGGTCCGCCTCACTG-CGAGAACTGG-TTGCGATCGAGTCTTTCTTCTTGGTAAACTGCATGCCCTTTATT-GGGTGTGTTGGTGCACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTTGCTCGCCTTAGCATGGAATAATTGGTTTTCACGACTACCGTAATGATTGATGAAAGCATTTGCCATGGATGTTTTCAGAAAGGGGAT
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = 18S_rDNA) = 
		N: 1-525;
CODONPOSSET  CodonPositions (CHARACTERS = 18S_rDNA) = 
		N: 1-525;
END;
[ The following blocks are output data for analysis step 1334 ]
BEGIN TREES;
      TITLE Tb6110;
      LINK TAXA = TaxaForAnalysisStep1334;
      TREE Fig._7 = [&R] (Rickia_passalina,(((Rhachomyces_philonthinus,((Stigmatomyces_hydrelliae,(Stigmatomyces_scaptomyzae,Stigmatomyces_rugosus))Stigmatomyces,((Corethromyces_sp._1,Corethromyces_bicolor)Corethromyces,Rhadinomyces_sp._1))),Botryandromyces_ornatus),(Ceratomyces_C3ABI,Aureobasidium_pullulans)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1218]


END;