#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 16, 2026; 16:56 GMT TreeBASE (cc) 1994-2008 Study reference: Agretious thomas K., Peintner U., Moser M., & Manimohan P. 2002. Anamika, a new mycorrhizal genus of Cortinariaceae from India and its phylogenetic position based on ITS and LSU sequences. Molecular Ecology, 106(2): 245-251. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S827] [ The following blocks are input data for analysis step 1340 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1340; DIMENSIONS NTAX=12; TAXLABELS Agrocybe_praecox Anamika_indica Gymnopilus_picreus Gymnopilus_sapineus Gymnopilus_spectabilis Hebeloma_circinans Hebeloma_fastibile Hebeloma_sarcophyllum Naucoria_bohemica_AF124712 Naucoria_bohemica_IB19940290 Naucoria_escharoides Naucoria_scolecina ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M247] TITLE Anamika_ITS; LINK TAXA = TaxaForAnalysisStep1340; DIMENSIONS NCHAR=859; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Agrocybe_praecox NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTG--AATAAACT-GGCGTGGTTGTAGCTGGCCCTCTC--GGG-GGCA---TGTGCTCG-CCC-GTCAACTTT--ATAT---CTCCACC--TGTGCACCCTTTGTAGA-CCT-GGACGATAA---CTTTTCCGA---GT-G----CAAACTCGGG------TCGG------GAGGAC--TG-CTGGC---TCTCA-CGAGTC-GGCTTTCCTTGTA--TT-ATCC-AGGCCTATGTT----ATTCA-CATA--CCCC-AAAG-AAT-GT-AACAGAATGT---ATCA--TTATGGCCT--TG-TG-CC-TATAAA---CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAAT-CATCGAATCTTTGAACGCACCTTGCGCTCC-TTGGTATTCCGAGGAGCATG-CCTGTTTGAGTGTCATTAAATTCT-------CAACC-TTATCA--GC----TTTTGC-TG-AT-AATGGCTTGGA-CT--TGGGGG-------TCTTTTGCTGGCTTT-----------CATTAG-TCTGCTCCCCTTAAATG-TATTAGCTGG--CGCCCCGCAGTGGA--CC---GTCTA-TTGGTGTGATAAT--TATCTACGCCG--TGGATGT-----CTGCTTTCA----A-TGGGTCTTTGCGCTG-CTT-CA-AA-CCGTC--------CTCGGACAAA-----CAAA-TG-ACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Anamika_indica NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTATTG--AATGAACTTGGTGTGGTTGTTGCTGGCTCCCTC--GGG-GGCA---TGTGCACA-CCT-GCCATCCTC--ATCT---TTCCACC--TGTGCACGTTTTGTAGA-TTT-GGA-T-TGA----CTTTCTGA---GG-T------AACTCAG-------TCGG------GAGGAT--TG-CTAG----TGT-------CCTGGCTTTCCTTGTA-TTT-CC---AAGTCTATGTT----TTTCA-TATA--CCCC-ATTG-CAT-GT-GACAGAATGT---ATCA---TTAGGTCTT-TG-TG-CC-TATAAAA---TCTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAAT-CATCGAATCTTTGAACGCACCTTGCGCTCC-TTGGTATTCCGAGGAGCATG-CCTGTTTGAGTGTCATTAAATTCT-------CAACCCTTATTA--GC---TTTATGT-CA-AT-AATGGCTTGGA-TG--TGGGGG----TATCTTTTTGCTGGCTTCTTT------CTAGATGG-TCAGCTCCCCTAAAATG-CATTAGCTGG--TGC-CCCACGTGGA--CTT--GTCTA-TTGGTGTGATAAT--TATCTACGCCA--TGGATGT-----CTACACTTA---TA-TGGG--TTTGCATTG-CTT-CT-AA-CTGTCT-GTTC-ATTCAGACAAT--A----CA-TG-ACCATTTGACCTCAAATCAGNNNNNNNNNNNNNNNNNNNNNNN Gymnopilus_picreus NNNNNNNNNNNNNNNNNNNNNNTAGGTGAACCTGCGGAAGGATCATTATTG--AATAAACTTGATGTAGTTGTAGCTGATCTTTTC--GGA-GATA---TGTGCTCG-CTC-GTCACCTTT--ATCT---TTCCACC--TGTGCACCTTTTGTAGA-CTT-GAA-TGTAACA--TTTTCCGAG---G-T------AACTCGG-------TTTG------GAGGAA--TGCCTTTT--ATTTAT---AG-A-GGGCTTTCCTTGTGCAT-TC---TAGTCTATGTT-----TTCA-TATA--CCCC-AAAG-AAT-GT-AACAGAATGT---ATCA---TTGGGCCT--TG-TG-CC-TATAAAA--CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAAT-GTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCC-TTGGTATTCCGAGGAGCATG-CCTGTTTGAGTGTCATTAAATTCT-------CAACCTTTATTA--GCTTTTGCGAGC-TT-GGTGAAGGATTGGA-TG--TGAGGG-------TTTTATGCTGGCTT---------CGCAAGAGG-TCTGCTCCCCTCAAATA-CATTAGCCGG--TGC--CCGTGTGGAT-CC---GTCTA-TTGGTGTGATAAT--TATCTACGCCG-TTAGACAT-----CTGCATTAA-----ATGGG---TTGTACTG-CTT-CT-AA-CAGTCC-ATTT-AGTTGGACAATT-AAT-----GA-CTATT-TGACCTCAAATCAGGTAGGACTACCNNNNNNNNNNNN Gymnopilus_sapineus AAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATTG--AATAAACTTGATGTGGTTGTAGCTGGCTCTCTT--GGG-GGTA---TGTGCTCG-CCC-GTCATCTTT--ATAT---TTCCACC--TGTGCACTTTTTGTAGA-TTT-AGA-TGTGA----CTTTCTGTG---G-C------GACTCAG-------TTGG------GAGGAA--TGTC--------AATT---CGTT-GGCTTTCCTTGTA-TGT-CC---AAATCTATGTT----TTTTA-TATA--CTCC---AG-AAT-GT-AATAGAATGT---ATCA---ATAGGCCT--TG-TG-CC-TATAAA-----TAGTACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAAT-GTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCC-TTGGTATTCCGAGGGGCATG-CCTGTTTGAGTGTCATTAAATTCT-------CAACC-TTACTA--GCTTTTATGAGC-AA-TGTAATGGCTTGGA-TG--TGGGGG-------TTTTTTGCTGGCGG---------CGAAAGAAA-TCAGCTCCCCTAAAATC-TATTAGCTGG--TGCCCCCGTGTGGA--CT---ATCTA-CTGGTGTGATAAT--TATCTATGCCG-TTAGATGT-----CAAA----------TAGGG---ATGTGCTG-CTT-CT-AA-TTGTCC-ACTT-A---GGACACTT-ATT-----GA-CTATT-TGACCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNN Gymnopilus_spectabilis NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGGAAGGATCATTATTG--AATAAACTTGATGTGGTTGTAGCTGACTTTCGCAAGAG-AGTA---TGTGCTCG-CCC-GTCACCTTT--ATCT---TTCCACC--TGTGCACTTTTTGTAGA-TTT-GAATTGTAG----CTTTCCGAG---G-T------AACTCGG-------TTGG------GAGGAA--TGTC---------ATT---CG-T-GGCTTTTCATGTA-ATA-CGTTCAAGTCTATGTT-----TTCA-TATA--CTCC--AAA-AAT-GT-AACAGAATGT---ATCA---TTGGGCCT--TG-TG-CC-TATAAA---CTTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAAT-GTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCC-TTGGTATTCCGAGGGGCATG-CCTGTTTGAGTGTCATTTAATTCT-------CAGCC-TTATTA--GC----TTTTGC-T--TCTAATGGTCTGGA-TG--TGGGGG-------TC-TTTGCTGGTTT---------CGCAAGAAA-TCTGCTCCCCTTAAATG-TATTAGCCGG--TGC-CCTACGTGGA--CT---GTCTA-CTGGTGTGATAAT--TATCTACGCCG-TTAGATGT-----CTGCTTTAA-----ATGGG---ATGCGCTG-CTT-CT-AA-TCGTCC-TTTC-A---GGACAATT-ATT-----GCACCATTTTGACCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNN Hebeloma_circinans NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTG--AATGAACTTGGTGTGGTTGTCGCTGGCCCTCTC--GGG-GGCA---TGTGCACA-CCC-GCCATCCTC--ATCT---CTCCACC--TGTGCACTTCTTGTAGA-CTT-GGA-T-TGA----CTTTCCGA---GG-C------AACTCGG-------TCGG------GAGGAC--TG-CTT---------------ATTGGCTTTCCTTGCA-TTT-CC---AGGCCTACGTT----TTTCA-TATA--CCCC-ATTG-TAT-GT-AACAGAATGT---ATCA---TTGGGCCCT-TG-TG-CC-TATAAA---CCTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAAT-CATCGAATCTTTGAACGCACCTTGCGCTCC-TTGGTATTCCGAGGAGCATG-CCTGTTTGAGTGTCATTAAATTCT-------CAACCTTTATTA--GC----TTTTGC-TG-AT-AATGGCTTGGA-TA--TGGGGG-----TATATTTTGCCGGCTTCTT------CACAGATGG-TCAGCTCCCCTTAAATG-CATTAGCCAG--TGC-CCCGCGTGGA--CT---GTCTA-TTGGTGTGATAAT--TATCTACGCCG--TGGACAT-----CTGCAATTA---TA-TGGG--TTTGCACTG-CTTCCT-AA-CCGTCT-GTTC-ATTCGGACAAT--A----CA-TG-ACCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Hebeloma_fastibile NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTATTG--AATGAACTTGGTGTGGTTGTTGCTGGCCCTTTC--GGG-GGCA---TGTGCACA-CCC-ATCATCCTC--ATCT---CTCCACC--TGTGCACCTCTTGTAGA-CTT-GGA-T-TGA----CTTTCCGA---GG-C------AACTCGG-------TCGG------GAGGAC-TTG-CTG-----GCATT----AGCTGGCTTTCCTTGCA-TTT-CC---CAGTCTATGTT---TTTTCA-TATA--CCCC-ATTG-AAT-GT-AACAGAATGT---AACATA-TTGGGCCTT-TG-TG-CC-TATAAAAA--CTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAAT-CATCGAATCTTTGAACGCACCTTGCGCTCC-TTGGTATTCCGAGGAGCATG-CCTGTTTGAGTGTCATTAAATTCT-------CAACTATTATCA--GC----TTTTGC-TG-AT-GATGGCTTGGA-TA--TGGGGG-----TTTATTTTGCTGGCTT---------CACAGAATG-TCAGCTCCCCTTAAATG-CATTAGCCGG--TNC-CCCGCGTGGA--CT---GTCTA-TTGGTGTGATAAT--TATCTACGCCG--TGGACAT-----CTACAATCA---TA-TGGG--TTTGCACTG-CTT-CC-AG-CCGTCT-GTTT-ACTCAGACAAT--A----CA-TG-ACAATTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAA Hebeloma_sarcophyllum NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTG--AATGAACTTGGTGTGGTTGTTGCTGGCCCTCTC--GGG-GGCA---TGTGCACA-CCC-GCCATCCTC--ATCT---CTCCACC--TGTGCACCTCATGTAGA-TTT-GGA-T-TGA----CTTTCCGA---GG-C------AACTCGG-------TCGG------GAGGAC--TG-CTAG----CTT-------GCTGGCTTTCCTTGCA-TTT-CC---AGGTCTATGTT----TTTCA-TATA--CCCC-ATTG-TAT-GT-AACAGAATGT---ATTA---TTGGGCACT-TG-TG-CC-TATAAAA---CTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAAT-CATCGAATCTTTGAACGCACCTTGCGCTCC-TTGGTATTCCGAGGAGCATG-CCTGTTTGAGTGTCATTAAATTCT-------CAACCTTTATCA--AC----TTTTGC-TG-AT-AATGGCTTGGA-TA--TGGGGG-----TTTATTTTGCTGGCTTCTT------CAC-AGATGGTCAGCTCCCCTTAAATG-CATTAGCTGG--TGC-CCCGCGTGGA--CT---GTCTA-TTGGTGTGATAAT--TATCTACGCCG--TGGACAT-----CTACAATCA---TA-TGGG--TTTGCACTG-CTT-CT-AA-CTGTCT-ATTC-ATTCAGACAAT--A----CA-TG-ACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Naucoria_bohemica_AF124712 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTG--AATGAACTTGGTGTGGTTGTTGCTGGCCCCCTCAAGGG-GGCA---TGTGCACG-CCC-GCCATCCTC--ATCT---CTTCACC--TGTGCACCTCTTGTAGG-CTT-GGA-T-AGA-TTTTTTTCCGA---GG-C------AACTCGG-------TCGG------GAGGAA--TG-CTGCGC--TCTGT---GAGCCAGCTTTT---GCAATTTTTCC--AAGTCTATGTT----TTTCA-TATA--CCCCATTAG-TAC-GT-AACAGAATGT-----CA---TTGGGCGCTTAG-CG-CC-TATAAA---GTTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAAT-CATCGAATCTTTGAACGCACCTTGCGCTCC-TTGGTATTCCGAGGAGCATG-CCTGTTTGAGTGTCATTAAATTCT-------CAACCTTTATTA--GC----TTTTGC-TG-GTAAATGGCTTGGA-TG--TGGGGG----------CTTGCTGGCTTT---------------GG-TCAGCTCCCCTTAAATG-CATTAGCCGG--TGC-CCTGTGTGGA--CT---GTCTA-TTGGTGTGATAAT--TATCTACGCCA--GGGATGT-----CTGCAA---------TGG--TTTTGCGCTG-CTT-CT-AA-CCGTCT-GTTC-ATTCGGACAATTT-----CAATG-ACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Naucoria_bohemica_IB19940290 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCCCCCTCAAGGG-GGCA---TGTGCACG-CCG-GC-ATCATC--ATCT---CTTCACC--TGTGCACCTTTTGTAGG-CTT-GGA-T-AGA-TTTTTTTCCGA----G-C-----ACACTCGG-------TCG-------GAGGAA--TG-CTGCGC--GCA------AGCCGGCTTTNTTTGCAATTTTTCC--AAGTGTATGTT----TTTCA-TATA--CCCCATTAG-TAC-GT-AACAGAATGT-----CA---TTGGGCGCTTAG-CG-CC-TATAAA---GTTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAAT-CATCGAATCTTTGAACGCACCTTGCGCTCC-TTGGTATTCCGAGGAGCATG-CCTGTTTGAGTGTCATTAAATTCT-------CAACCTTTATTA--GC----TTTTGC-TG-GTAAATGGCTTGGA-TG--TGGGGG----------CTTGCTGGCTTT---------------GG-TCAGCTCCCCTTAAATG-CATTAGCCGG--TGC-CCTGTGTGGA--CT---GTCTACCTGGTGTGATAAT--TATCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Naucoria_escharoides NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGCGGAAGGATCATTATTG--AATGAACTTGGTGTGGTTGTTGCTGGCCCTCTC--GGG-GGCA---TGTGCACA-CCC-ATCATCCTC--ATCT---CTCCACC--TGTGCACCTCTTGTAGA-CCT-GGA-T-TGA----CTTTCCG----GG-C------AACTCGG-------TCGG------GAAGAT--TG-CTGCGC--TCTGT---GAGCCAGCTTTCTTTGCA-TGT-CC---AGGACTATGTT---TTTTCA-TATA--CCCCTATAG-AAT-GT-AACAGAATGT---ATCA---TTGGGCC-T-TG-TG-CC-TATAAA---CCTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAAT-CATCGAATCTTTGAACGCACCTTGCGCTCC-TTGGTATTCCGAGGAGCATG-CCTGTTTGAGTGTCATTAAATTCT-------CAACC-TTATTA--AC----TTTTGT-TG-AT-AATGGATTGGA-TA--TGGGGG-----TTTCTTTTGCTGGCTTCTT------CAC-AGAGA-TCAGCTCCCCTTAAATG-CATTAGCTGG--TGA-CCCGCGTGGA--CC---ATCTA-TTGGTGTGATAAT--TATCTACGCCG--TGGATGT-----CTGCAATCA--ATA-TGGG-TTTTGCACTG-CTT-CT-AA-CCGTCT-GTTC-ATTCGGACAAT--A----CA-TG-ACAATTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAA Naucoria_scolecina NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGATCATTATTG--AATGAACTTGGTGTGGTTGTTGCTGGCCCTCTC--GGG-GGCA---TGTGCACA-CCC-ACCATCCTC--ATCT---CTCCACC--TGTGCACCTCTTGTAGA-CCT-GGA-T-TGA----CTTTCCGA---GG-C------AACTCGG-------TCGG------GAAGAT--TG-CTGCGC--TCTGT---GAGCCAGCTTTCTTTGCA-TGT-CC---AGGCCTATGTT----TTTCA-TATA--CCCCTATAG-AAT-GT-AACAGAATGT---ATCA---TTGGGCC-T-TG-TG-CC-TATAAA---CCTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAAT-CATCGAATCTTTGAACGCACCTTGCGCTCC-TTGGTATTCCGAGGAGCATG-CCTGTTTGAGTGTCATTAAATTCT-------CAACC-TTATTA--AC----TTTTGT-TG-AT-AATGGATTGGATTG--TGGGGG-----TTTCTTTTGCTGGCTTCTT------CAC-AGAGA-TCAGCTCCCCTTAAATG-CATTAGCTGG--TGC-CCCGCGTGGA--CC---ATCTA-TTGGTGTGATAAT--TATCTACGCCG--TGGATGT-----CTGCAATCA---TA-TGGG-TTTCGCACTG-CTT-CT-AA-CCGTCT-GTTC-ATTCGGACAAT--A----CA-TG-ACAATTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Anamika_ITS) = N: 1-859; CODONPOSSET CodonPositions (CHARACTERS = Anamika_ITS) = N: 1-859; END; [ The following blocks are output data for analysis step 1340 ] BEGIN TREES; TITLE Tb6116; LINK TAXA = TaxaForAnalysisStep1340; TREE Fig._9 = [&R] ((((((Naucoria_scolecina,Naucoria_escharoides),((Hebeloma_sarcophyllum,Hebeloma_fastibile),Hebeloma_circinans)),Anamika_indica),(Naucoria_bohemica_IB19940290,Naucoria_bohemica_AF124712))'/Hebeloma',Agrocybe_praecox),((Gymnopilus_sapineus,Gymnopilus_spectabilis),Gymnopilus_picreus)'/Gymnopilus'); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr611] END;