#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 10, 2026; 9:33 GMT TreeBASE (cc) 1994-2008 Study reference: Brown K., Li L., Bailes E., & Tarlinton R.E. 2014. Endogenous lentiviruses in mainland African bushbabies provide insight into the origin of SIV. Evolution, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15831] [ The following blocks are input data for analysis step 13770 ] BEGIN TAXA; TITLE TaxaForAnalysisStep13770; DIMENSIONS NTAX=38; TAXLABELS Bovine_Immunodeficiency_Virus Caprine_Arthritis_Encephalitis_Virus Equine_Infectious_Anemia_Virus Equine_Infectious_Anemia_Virus_Strain_Liaoning Feline_Immunodeficiency_Virus_Domestic_Cat_San_Diego_Isolate Feline_Immunodeficiency_Virus_Domestic_Cat_Subtype_C 'Feline Immunodeficiency Virus Palla''s Cat' Feline_Immunodeficiency_Virus_Puma_Subtype_A Feline_Immunodeficiency_Virus_Puma_Subtype_B Human_Immunodeficiency_Virus_1_Group_M Human_Immunodeficiency_Virus_1_Group_O Human_Immunodeficiency_Virus_2 Jembrana_Disease_Virus 'Maedi-Visna Virus' Ovine_Lentivirus Prosimian_Immunodeficiency_Virus_Fat_Tailed_Dwarf_Lemur Prosimian_Immunodeficiency_Virus_Gray_Mouse_Lemur Prosimian_Immunodeficiency_Virus_Mohol_Bushbaby RELIK_Brown_Hare RELIK_European_Rabbit Simian_Immunodeficiency_Virus__African_Green_Monkey_Grivet Simian_Immunodeficiency_Virus__Greater_Spot_Nosed_Monkey Simian_Immunodeficiency_Virus_African_Green_Monkey_Tantalus Simian_Immunodeficiency_Virus_Angolan_Talapoin Simian_Immunodeficiency_Virus_Chimpanzee 'Simian Immunodeficiency Virus De Brazza''s Monkey' 'Simian Immunodeficiency Virus Dent''s Mona' Simian_Immunodeficiency_Virus_Drill Simian_Immunodeficiency_Virus_Gabon_Talapoin 'Simian Immunodeficiency Virus L''hoests Monkey' Simian_Immunodeficiency_Virus_Mandrill Simian_Immunodeficiency_Virus_Mantled_Guereza Simian_Immunodeficiency_Virus_Mona_Monkey Simian_Immunodeficiency_Virus_Mustached_Guenon Simian_Immunodeficiency_Virus_Red_Capped_Mangabey Simian_Immunodeficiency_Virus_Sooty_Mangabey Simian_Immunodeficiency_Virus_Sun_Tailed_Monkey 'Simian Immunodeficiency Virus Syke''s Monkey' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M22265] TITLE Lentivirus_pol_matrix; LINK TAXA = TaxaForAnalysisStep13770; DIMENSIONS NCHAR=4345; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 1910 1920 1930 1940 1950 1960 1970 1980 1990 2000 2010 2020 2030 2040 2050 2060 2070 2080 2090 2100 2110 2120 2130 2140 2150 2160 2170 2180 2190 2200 2210 2220 2230 2240 2250 2260 2270 2280 2290 2300 2310 2320 2330 2340 2350 2360 2370 2380 2390 2400 2410 2420 2430 2440 2450 2460 2470 2480 2490 2500 2510 2520 2530 2540 2550 2560 2570 2580 2590 2600 2610 2620 2630 2640 2650 2660 2670 2680 2690 2700 2710 2720 2730 2740 2750 2760 2770 2780 2790 2800 2810 2820 2830 2840 2850 2860 2870 2880 2890 2900 2910 2920 2930 2940 2950 2960 2970 2980 2990 3000 3010 3020 3030 3040 3050 3060 3070 3080 3090 3100 3110 3120 3130 3140 3150 3160 3170 3180 3190 3200 3210 3220 3230 3240 3250 3260 3270 3280 3290 3300 3310 3320 3330 3340 3350 3360 3370 3380 3390 3400 3410 3420 3430 3440 3450 3460 3470 3480 3490 3500 3510 3520 3530 3540 3550 3560 3570 3580 3590 3600 3610 3620 3630 3640 3650 3660 3670 3680 3690 3700 3710 3720 3730 3740 3750 3760 3770 3780 3790 3800 3810 3820 3830 3840 3850 3860 3870 3880 3890 3900 3910 3920 3930 3940 3950 3960 3970 3980 3990 4000 4010 4020 4030 4040 4050 4060 4070 4080 4090 4100 4110 4120 4130 4140 4150 4160 4170 4180 4190 4200 4210 4220 4230 4240 4250 4260 4270 4280 4290 4300 4310 4320 4330 4340 4350 4360 4370 4380 4390 4400 4410 4420 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Bovine_Immunodeficiency_Virus --------------------------------------------------------------------------------------------------------------------------------ACAGCAAAAATGCTACCATTGTGGCAAACCTGGCCACCAAGCAAGAAACTGCAGGTCAAAAAACGGGAAGTGCTCCTCTGCCCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGGGCAGAGGAGCCAACCACAGAACAATTTTCACCAGAGCAACATGAGTTCTGTGACCCCATCTGCACCCCCTCTTATATTAGATTAGACAAACAGCCTTTTATAAAGGTGTTCATAGGGGGAAGATGGGTAAAAGGGTTAGTAGACACTGGAGCAGATGAGGTAGTGCTTAAGAACATACATTGGGATAGGATAAA---AGGGTATCCAGGGACACCAATTAAACAAATTGGGGTAAATGGAGTAAATGTGGCCAAAAGGAAGACCCACGTAGAGTGGAGATT---------------TAAGGATAAGACTGGGATAATTGATGTCTTGTTCTCAG---ATACTCCTGTAA------ACCTTTTTGGGAGATCTCTTCTACGTAGCATAGTGACTTGCTTCACCCTACTTGTTCACACAGAAAAAATCGAACCCCTACCCGTCAAGGTAA------------GGGGACCAGGGCCTAAGGTACCCCAGT-GGCCCTTGACAAAAGAAAAGTATCAGGCTCTTAAGGAAATTGTGAAAGATCTTTTAGCAGAAGGAAAAATTTCCGAAGCTGCTTGGGATAACCCATATAATACCCCAGTTTTTGTTATAAAGAAAAAGGGAACGGGAAGATGGAGGATGCTAATGGATTTTAGGGAATTAAATAAGATAACAGTTAAAGGACAAGAATTCTCTACAGGCTTACCTTACCCTCCAGGAATTAAGGAATGTGAACACTTAACTGCAATAGATATAAAAGATGCCTACTTTACTATCCCTTT---ACATGAGGACTTTAGACCCTTTACAGCCTTCTCTGTAGTCCCTGTAAATCGAGAAGGACCTATAGAGAGGTTCCAGTGGAATGTTCTACCACAAGGATGGGTATGTAGCCCTGCCATTTATCAGACTACCACCCAGAAGATTATAGAAAACATTAAAAAGAGTCACCCA---GATGTCATGTTGTATCAATATATGGATGATTTGTTGATTGGGTCTAATAG------GGATGATCATAAGCAAATAGTGCAGGAAATCAGGGATAAGTTAGGATCATATGGTTTCAAGACTCCAGATGAAAAGGTCCAGGAAGAGAG---AGTGAAATGGATCGGTTTTGAGCTCACACCCAAGAAATGGCGTTTTCAGCCCAGGCAACTAAAGATAAAAAA------CCCACTCACAGTAAATGAATTACAGCAATTAGTAGGTAATTGTGTTTGGGTA---CAGCCAGAAGTAAAAATCCCTCTATACCCCTTAACCGATCTACTGAGGGATAAGACCAATCTCCAAGAAAAGATACAACTAACACCAGAAGCCATC---------------------------------------------------------------------------------------------------------------------------AAGTGTGTAGAAGAATTCAATCTAAAACTAAAAGATCCAGAATGGAAAGATAGAATAAGAGAAGGAGCAGAATTAGTCATAAAAATACAGATGGTTCCTCGGGGCATAGTATTTGATCTGTTGCAAGATGGAA------------------ATCCCATATGGGGAGGAGTAAAAGGACTAAATTATGATCATTCAAACAAAATAAAAAAGATACTTAGAACTATGAATGAGCTGAACAGAACAGTGGTAATTATGACAGGAAGAGAAGC---TAGTTTCCTGCTTCCTGGGTCTTCTGAAGATTGGGAAGCGGCACTCCAGAAGGAAGAAAGTCTAACACAAATATTCCCAGTAAAGTTTTATAGGCACTCCTGCAGAT------------------GGACCTCCATATGTGGGCCAGTA---AGAGAAAATCTAACCACCTACTATACTGACGGAGGG------AAGAAAGGGAAAACAGCTGCAGCAGTATATTGGTGTGAAGGAAGGACTAAGTCAAAGGTATTTCCAGGA------ACCAATCAACAGGCGGAATTGAAGGCCATATGCATGGCTCTCTTGGAT---GGACCACCAAAAATGAATATCATAACAGATAGTAGATACGCCTATGAGGGAATGAGAGAAGAACCAGAAACGTGGGCCAGGGAAGGAATCTGGCTGGAG---ATTGCCAAGATATTGCCCTTTAAGCAGTACGTGGGGGTCGGGTGGGTGCCTGCACATAAAGGGATAGGAGGAAATACAGAGGCAGATGAAGGAGTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAGCCTTAGAACAGATGGCCCCGTGTAGCCCTCCTGAGGCCATTCTATTAAAACCAGGAGAAAAACAAAATCTGGAGACAGGGATCTACATGCAGGGGCTTAGACCACAAAGCTTCCTCCCAAGAGCAGACTTACCAGTAGCCATCACAGGAACCATGGTAGATTCAGAGCTACAGCTACAGCTACTTAACATAGGAACTGAGCATATAAGAATCCAAAAAGATGAGGTCTTCATGAC------------------CTGTTTCCTAGAAAATATCCCCTCAGCCACT-GAAGATCATGA-GAGATGGCATACCTCACCAGACATTTTGGTTAGGCAGTTCCATCTCCCTAAGAGAATAGCTAAAGAGATAGTAGCCAGATGCCAAGAATGT--------------AAAAGGACAACCACTAGCCCAGTCAGAGGAACAAACCCCAGAGGTCGATTCTTATGGCAGATGGACAATACTCACTGGAATAAAACAATTATTTGGGTAGCAGTAGAGACAAATTCAGGATTAGTGGAAGCTCAGGTGATCCCTGAAGAAACAGCACTACAAGTAGCTCTCTGCATTTTACAGCTAATCCAGAGATATACAGTTCTTCACTTACATAGTGACAACGGGCCGTGCTTTACTGCACACAGGATAGAAAATCTATGTAAGTATCTGGGGATCACAAAAACTACGGGAATACCCTACAACCCACAATCCCAGGGAGTTGTAGAAAGAGCCCACAGAGATCTAAAAGACAGATTGGCAGCTTATCAGGGAGATTGTGAAACCGTAGAAGCAGCCCTTAGCCTCGCATTAGTTTCTTTAAAT---AAAAAAAGAGGGGGAATAGGGGGCCATACACCATATGAAATATACCTAGAATCAGAACATACCAAATACCAAGACCAACTAGAACAACAATTTTCAAAACAAAAAATTGAAAA----------GTGGTGTTACGTAAGGAACAGAAGAAAGGAA---------TGGAAAGGACCCTACAAAGTGTTGTGGGACGGAGACGGGG----CAGCAGTAATAGAG---GAAGAGGGAAAAACAGCCTTATATCCACACCGTCATATGCGCTTCATCCCCCCCCCAGATTCAGATATCCAAGATGGGAGTTCGTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Caprine_Arthritis_Encephalitis_Virus -----------------------------------------------------------------------------------------------ATGTCACAACTGTGGAAAGAGAGGACATATGCAAAAAGAATGCAGAGGAAAGAGAGACATAAGGGGAAAACAGCAGGGAAACGGGAGGAGGGGGATACGTGTGGTGCCGTCCGCTCCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTATGGAATAACTTCAGCACCACCTATGGTTCAGGTCCGCATAGGTTCCCAGCAGAGGAACTTGTTATTTGATACCGGGGCGGACCGAACTATAGTTAGATGGCATGAGGGCTC------------GGGAAACCCAGCCGGAAGGATAAAACTGCAAGGAATAGGAGGAATAGTAGAAGGAGAAAAATGGAATAATGTAGAATTAGAATA---------------TAAAGGAGAAACAAGAAAGGGAACAATAGTAGTGTTACCACAAAGTCCAGTAG------AAGTATTAGGACGAGATAACATGGCCCGATTTGGAATAAAGATAA---TAATGGCAAATTTAGAGGAAAAAAGAATCCCAATTACAAAAGTAAAATTGAAAGAGGGATGTACGGGTCCACATGTCCCACAAT-GGCCATTAACAGAAGAGAAATTAAAAGGTCTAACAGAAATCATAGATAAATTAGTGGAAGAAGGAAAACTAGGAAAGGCACCCCCACATTGGACATGTAATACTCCAATCTTTTGCATAAAAAAGAAATCAGGGA---AGTGGAGAATGTTAATAGATTTCAGAGAATTGAACAAACAGACAGAAGATTTAACAGAAGCGCAGTTAGGACTCCCGCATCCGGGAGGACTACAAAAGAAAAAACATGTTACAATATTGGACATAGGAGATGCATATTTTACTATACCCCT---ATATGAACCATATCGAGAGTACACATGTTTTACTCTATTAAGTCCTAATAATCTAGGACCATGTAAAAGATACTATTGGAAAGTGCTGCCACAAGGTTGGAAATTGAGTCCATCTGTATATCAATTTACTATGCAGGAGATCTTAGAGGATTGGATACAGCAGCATCCA---GAAATTCAATTTGGCATATATATGGATGATATTTACATAGGAAGTGATTTAGAAATTAAAAAGCATAGAGAAATAGTGAAAGATTTAGCCAATTATATTGCCCAATATGGATTCACTCTGCCAGAAGAGAAGAGACAAAAGGGATATCCAGCAAAATGGCTAGGATTTGAACTACACCCGCAGACCTGGAAATTTCAGAAGCATACATTACCTGAATTAACAAAGGGAACAATAACATTAAATAAATTACAGAAATTAGTAGGAGAATTAGTATGG---AGACAATCCATAATTGGGAAAAGCATTCCTAACATTCTGAAATTAATGGAAGGAGATAGAGAATTACAAAGTGAAAGAAAAATTGAAGAAGTACATGTG---------------------------------------------------------------------------------------------------------------------------AAAGAATGGGAAGCATGTAGGAAAAAATTAGAAGAA---ATGGAAGGAAATTATTATAATAAAGACAAAGATGTCTATGGACAATTGGCTTGG---GGAGACAAAGCTATAGAATATATAGTGTATCAGGAGAAAGGGAAACCAT---------------TATGGGTAAATGTGGTTCACAATATAAAGAACCTAAGCATCCCGCAACAGGTTATTAAAGCAGCGCAAAAATTAACCCAAGAAGTCATCATTAGGACAGGAAAAATACC---ATGGATATTGTTGCCAGGGAAAGAAGAAGATTGGAGACTAGAATTGCAATTAG---GGAACATCACATGGATGCC------AAAATTTTGGTCCTGTTATCGAGGACATACAAGATGGAGAAAAAGAAATATAATAGAAGAAGTAGTA---------GAAGGGCCTACATATTATACAGATGGAGGA------AAAAAGAATAAAGTAGGAAGTCTAGGGTTCATAGTATCAACAGGGGAAAAATTTAGAAAGCATGAAGAG---GGCACAAACCAGCAACTAGAATTAAGAGCCATAGAGGAAGCTCTAAAACAA---GGGCCTCAAACAATGAATTTAGTAACAGATAGTAGATATGCATTTGAATTTTTATTAAGAAATTGGGATGAAGAAGTAATAAAGAATCCAATTCAAGCAAGAATTATGGAAATTGCCCACAAGAAAGATAGGATAGGAGTGCATTGGGTGCCAGGACATAAAGGGATTCCCCAAAATGAAGAAATAGACAAATATATTT---------------CGGAAATATTTCTTGCAAAAGAAGGAGAAGGAATTCTCCCAAAAAGAGAAGAGGATGCAGGGTATGATTTAATATGCCCAGAAGAGGTTACCATAGAGCCAGGACAAGTGAAATGCATCCCCATAGAGCTAAGATTAAATTTAAAGAAATCACAATGGGCTATGATTGCTACAAAAAGCAGCATGGCTGCCAAAGGAGTGTTCACACAAGGAGGAATCATAGACTCAGGATA-TCAGGGACAAATACAGGTAATAATGTATAATAGCAATAAAATAGCAGTAGTCATACCCCAAGGGAGAAAATTTGCACAATTAATATTAATGGATAAAAAGCATGGAAAATTGGAACCCT---GGGGGGAAAGCAGAAAAACAGAAAGGGGAGAAAAAGGATTTGGGTCTACAGGAAT------------------GTATTGGATAGAAAATATTCCTCTGGCAGAG-GAAGACCACAC-AAAATGGCATCAAGATGCCCGATCATTGCATCTAGAATTTGAAATTCCAAGAACAGCAGCAGAAGACATAGTAAATCAATGTGAAATATGCAAA-----------GAAGCGAGGACACCTGCAGTAATTAGAGGCGGAAACAAAAGGGGGGTAAATCATTGGCAAGTGGATTATACCCATTATGAAAATATCATACTATTAGTATGGGTAGAAACAAATTCAGGACTAATATATGCAGAAAAAGTAAAAGGAGAATCAGGGCAAGAATTCAGAATAAAAGTGATGCATTGGTATGCATTATTTGGTCCAGAGTCATTGCAGTCAGACAATGGACCTGCATTTGCAGCAGAGCCCACACAGCTGTTAATGCAATACCTAGGAGTAAAACACACAACAGGCATACCTTGGAATCCACAGTCTCAGGCTATAGTAGAAAGGGCACATCAACTATTGAAAAGCACTTTAAAGAAGTTCCAGCCACAATTTGTCGCTGTAGAATCAGCCATAGCAGCAGCCCTAGTCGCCATAAATATAAAAAGAAAGGGTGGGCTGGGGACAAGCCCTATGGATATTTTTATATATAATAAAGAACAGAAAAGAATAAATAATAAATATAATAAAAATTCTCAAAAAATTCAATTCT----------------GTTATTACAGAATAAGGAAAAGAGGACAT-CAGGAGAGTGGAAAGGACCAACCCAGGTACTGTGGAAAGGGGAAGGAGCCAATTGTGGTAAAGGATATAGAAAGTGAAAAGTATTTAGTAATACCTTACAAAGATGCAAAATTCATCCCGCCACCAACAAAAGAAAAGGAATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Equine_Infectious_Anemia_Virus -----------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAGAAGTGTTCCAAAAAACGGGAAGCAAGGGGCTCAAGGGAGGCCCCAGAAACAAACTTTCCCGATACAACAGAAG--AGTCAGCACAACAAATCTGTTGTACAAGAGACTCCTCAGACTCAAAATCTGTACCCAGATCTGAGCGAAATAAAAAAGGAATACAATGTCAAGGAGAAGGATCAAGTAGAGGATCTCAACCTGGACAGTTTGTGGGAG-------------------------------------------------------------------------------------------------------------------------------------------------TAACATATAATCTAGAGAAAAGGCCTACTACAATAGTATTAATTAATGATACTCCCTTAAATGTACTGTTAGACACAGGAGCAGATACTTCAGTGTTGACTACTGCACATTATAATAGGTTAAAATATAGAGGGAGAAAATATCAAGGGACGGGAATAATAGGAGTGGGAGGAAATGTGGAAACATTTTCTACGCCTGTGACTATAAAGAA---------------AAAGGGTAGACACATTAAGACAAGAATGCTAGTGGCAG---ATATTCCAGTGA------CTATTTTGGGACGAGATATTCTTCAGGACTTAGGTGCAAAATTGG---TTTTGGCACAGCT---CTCCAAGGAAATAAAATTTAGAAAAATAGAGTTAAAAGAGGGCACAATGGGGCCAAAAATTCCTCAAT-GGCCACTCACTAAGGAGAAACTAGAAGGGGCCAAAGAGATAGTCCAAAGACTATTGTCAGAGGGAAAAATATCAGAAGCTAGTGACAATAATCCTTATAATTCACCCATATTTGTAATAAAAAAGAGGTCTGGCA---AATGGAGGTTATTACAAGATCTGAGAGAATTAAACAAAACAGTACAAGTAGGAACGGAAATATCCAGAGGATTGCCTCACCCGGGAGGATTAATTAAATGTAAACACATGACTGTATTAGATATTGGAGATGCATATTTCACTATACCCTT---AGATCCAGAGTTTAGACCATATACAGCTTTCACTATTCCCTCCATTAATCATCAAGAACCAGATAAAAGATATGTGTGGAAATGTTTACCACAAGGATTCGTGTTGAGCCCATATATATATCAGAAAACATTACAGGAAATTTTACAACCTTTTAGGGAAAGATATCCT---GAAGTACAATTGTATCAATATATGGATGATTTGTTCATGGGAAGTAATGGTTCTAAAAAACAACACAAAGAGTTAATCATAGAATTAAGGGCGATCTTACTGGAAAAGGGTTTTGAGACACCAGATGATAAATTACAAGAAGTGCCACCTTATAGCTGGCTAGGTTATCAACTTTGTCCTGAAAATTGGAAAGTACAAAAAATGCAATTAGACATGGTAAA------GAATCCAACCCTTAATGATGTGCAAAAATTAATGGGGAATATAACATGGATGAGCTCAGGGATCCCAGGGTTGACAGTAAAACACATTGCAGCTACTACTAAGGGATGTTTAGAGTTGAATCAAAAAGTAATTTGGACGGAAGAGGCACAA---------------------------------------------------------------------------------------------------------------------------AAAGAGTTAGAAGAAAATAATGAGAAGATTAAAAATGCTCAAGGGTTACAATATTATAATCCAGAAGAAGAAATGTTATGTGAGGTTGAAATTACAAAAAATTATGAGGCAACTTATGTTATAAAACAATCACAAGGAA------------TCCTATGGGCAGGTAAAAAGATTATGAAGGCTAATAAGGGATGGTCAACAGTAAAAAATTTAATGTTATTGTTGCAACATGTGGCAACAGAAAGTATTACTAGAGTAGGAAAATGTCC---AACGTTTAAGGTACCATTTACCAAAGAGCAAGTAATGTGGGAAATGCAAAAAGGATGGTATTATTCTTGGCTCCC---AGAAATAGTATATACACATCAAGTAGTTCATGATGATTGGAGAA---TGAAATTGGTAGAAGAACCTACA------TCAGGAATAACAATA---TACACTGATGGGGGA------AAACAAAATGGAGAAGGAATAGCAGCTTATGTGACCAGTAATGGGAGAACTAAACAGAAAAGGTTAGGACCTGTCACTCATCAAGTTGCTGAAAGAATGGCAATACAAATGGCATTAGAGGATACCAGAGATAAACAAGTAAATATAGTAACTGATAGTTATTATTGTTGGAAAAATATTACAGAAGGATTAGGTTTAGAAGGACCACAAAGTCCTTGGT---GGCCTATAATACAAAATATACGAGAAAAAGAGATAGTTTATTTTGCTTGGGTACCTGGTCACAAAGGGATATATGGTAATCAATTGGCAGATGAAGCCGCAA------AAATAAAAGAAGAAATCATGCTAGCATACCAAGGCACACAAATTAAAGAGAAAAGAGATGAAGATGCAGGGTTTGACTTATGTGTTCCTTATGACATCATGATACCTGTATCTGACACAAAAATCATACCCACAGATGTAAAAATTCAAGTTCCTCCTAATAGCTTTGGATGGGTCACTGGGAAATCATCAATGGCAAAACAGGGGTTATTAATTAATGGAGGAATAATTGATGAAGGATA-TACAGGAGAAATACAAGTGATATGTACTAATATTGGAAAAAGTAATATTAAATTAATAGAGGGACAAAAATTTGCACAATTAATTATACTAC---AGCATCACTCAAATTCCAGACAGCCTTGGGATGAAAATAAAATATCTCAGAGAGGGGATAAAGGATTTGGAAGTACAGGAGT------------------ATTCTGGGTAGAAAATATTCAGGAAGCACAA-GATGAACATGA-GAATTGGCATACATCACCAAAGATATTGGCAAGAAATTATAAGATACCATTGACTGTAGCAAAACAGATAACTCAAGAATGTCCTCATTGCACTAA---------GCAAGGATCAGGACCTGCAGGTTGTGTCATGAGATCTCCTAATC--------ATTGGCAGGCAGATTGCACACATTTGGACAATAAGATAATATTGACTTTTGTAGAGTCAAATTCAGGATACATACATGCTACATTATTGTCAAAAGAAAATGCATTATGTACTTCATTGGCTATTTTAGAATGGGCAAGATTGTTTTCACCAAAGTCCTTACACACAGATAACGGCACTAATTTTGTGGCAGAACCAGTTGTAAATTTGTTGAAGTTCCTAAAGATAGCACATACCACAGGAATACCATATCATCCAGAAAGTCAGGGTATTGTAGAAAGGGCAAATAGGACCTTGAAAGAGAAGATTCAAAGTCATAGAGACAACACTCAAACACTGGAGGCAGCTTTACAACTTGCTCTCATTACTTGTAAC---AAAGGGAGGGAAAGTATGGGAGGACAGACACCATGGGAAGTATTTATCACTAATCAAGCACAAGTAATACATGAGAAACTTTTACTACA-----GCAAGCACAATCCTCCAAAAAATTTT-----GTTTTTACAAAATCCCTGGTGAACATGAT---------TGGAAGGGACCTACTAGGGTGCTGTGGAAGGGTGATGGTG----CAGTAGTAGTTAATGATGAAGGAAAGGGAATAATTGCTGTACCATTAACCAGGACTAAGTTACTAATAAAACCAAATTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Equine_Infectious_Anemia_Virus_Strain_Liaoning -----------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGCTCCAAAAAACGGGAAGCAAGGGGCTCAGGGGAGGCCCCAAAAACAAACTTTCCCTGTGCAGAAGGAATCAATGAACAAAACACA--------AAAGGAGGAAAAACAGCAAGGGACCTTATATCCAGATTTGAGTCAGATGAAACAGGAGTACAAGATCAAGGAAGAGGAAAATCAAGAGGATCTCAATCTGGACAGTTTGTGGGAG-------------------------------------------------------------------------------------------------------------------------------------------------TAACTTATAATTTAGAAAAGAGACCAACTACAATAGTTTTGATTAATGACACACCCTTAAATGTATTATTGGACACAGGAGCAGACACGTCGGTACTAACTATTGCACATTATAATAGGTTAAAGTATAGAGGAAGGAAATATCAAGGTACAGGTATTGTTGGGGTTGGAGGTAATGTAGAAACATTCTCCACTCCTGTTACGGTAAAAAG---------------GAAAGGAAAACAAATTAAAACTAGAATGTTAGTAGCAG---ATATCCCGGTTA------CTATTTTGGGGCGAGATATCCTTCAAGAATTAGGCGCACAATTAA---TAATGGCTCAACT---TTCAAAAGAAATAACCCCAAGAGAAATTAAATTAAAAACAGGCACAGTAGGGCCTAAGGTTCCCCAAT-GGCCACTTACTAAAGAGAAGTTATTAGGTGCTAAAGAAATAGTCAAAAAATTGTTGGATGAAGGTAAAATATCAGAAGCCAGTGATGATAATCCTTATAATTCTCCTATATTTGGAATAAAAAAGAAATCTGGGA---AGTGGAGACTATTGCAAGATTTAAGAGAATTAAATAAGGTGGTACAAGTAGGAACTGAAATATCCAGAGGGTTACCTCATCCAGGGGGATTAATTAAATGTAATCATATGACAGTATTAGATATTGGAGATGCCTATTTCACTATACCATT---AGATCCAAAGTTTAGACAATATACAGCATTTACTGTGCCATCCATTAATCATCAGGAACCAGATAAAAGATATGTATGGAATTGCTTGCCACAGGGTTTTGTGTTAAGTCCATACATATATCAAAAAACATTACAGGACATATTACAAGCTTTTAGAGAAAGGCATCCA---GATGTACAATTATATCAATATATGGATGATTTATTCATTGGGAGTAATGGATCTAAAAGACAACATAAGGAACTAGTAGAAGAATTAAGAGCTATTCTTTTAGAAAAGGGCTTTGAGACGCCTGAGGATAAATTGCAGGAAGAGGCACCCTATAATTGGCTGGGATATCAACTTAGTCCAGGCAATTGGAAAGTACAAAAGATGCAATTAGAATTGGTAAA------AGAACCAACATTAAATGATGTGCAAAAATTAATGGGAAATATAACATGGATGAGTTCAGGGGTTCCTGGATTAACAGTGAAGCAAATAGCTGCTACCACTAAAGGATGCCTAGATTTAAATCAAAAGGTAGTATGGACGGAAGAAGCACGA---------------------------------------------------------------------------------------------------------------------------AAAGAACTAGAGGAAAATAATAAAAAGATTCAGGAAGCTCAGGGATTGCAATATTATAACCCAGAAGAAGAAGTAATCTGTGAGATTGAAATTACTAAAAATTATGAGGCTACTTATATAATAAAACAGTCCCAAGGAA------------TATTGTGGGCAGGAAAGAAAATTATGGGGGCTAATAAAGGATGGTCCGCAGCAAAAAATCTAATGTTATTGTTACAACATGTAGCCACAGAAAGTATTGTTAGAATTGGAACATGTCC---AAAATTTAAAGTACCTTTTACTAAAGAACAAGTCAAATGGGAAATGGAGAAGGGATGGTATTATTCATGGCTACC---AGATATGGTATATTCACATCAAGTTGTTCATGATGATTGGAAAC---TGAAATTAGTAGAGCAACCAACA------TCTGGTATAACAATT---TACACTGATGGGGGT------AAACAGAATGAAGAAGGAGTTGCAGCTTATGTGACTAGTAATGGGAAAACTAAACAAAAAAGGTTAGGACCTGTTACTCATCAAACTGCTGAGAGGATAGCAATACAAATGGCATTAGAAGATACTGAAGAGACACTGGTAAATATAGTAACTGATAGTTACTACTGTTGGAAAAATATTACAGAAGGATTAGGGTTAGAAGGACCAGACAGCCCCTGGT---GGCCAATAATTCAAAATATTAGGGCTAATGAAATGGTTTATTTTGCTTGGGTACCAGGTCACAAGGGAATATATGGCAATCAATTGGCAGATGAGGCTACTA------AAATAACAGAGGACATTATGTTAGCATATCAAGGCACACAGATTAAGGAAAAAAGAGATGAAGATGCAGGGTTTGACTCGTGTATTCCTTATGACATAATAATACCTGTCTCTGAGACAAAGGTTATACCCACAGATGTAAAAATACAGGTACCTCATAAATGTTTTGGATGGGTAACTGGTAAGTCATCGATGGCTAAGCAAGGGTTATTAATCAATGGGGGAATAATTGATGAAGGATA-CACAGGTGAAATACAGGTAATTTGTACTAACATTGGAAAGAGTAACATTAAACTCAGGGAAGGACAAAAGTTTGCACAATTAATCATATTAC---AGCATCGATCAAATGATAAACAAATCTGGGATGAAAATAAAACATCTCAAAGGAGAGATAAAGGGTTTGGAAGCACAGGTGT------------------ATTTTGGGTAGAGAATATCCAAGAGGCACAA-GATGAACATGA-AAACTGGCATACATCTCCAAAGATATTGGCAAAAAGATATGGGTTACCATTGACGGTAGCTAGACAGATAACTCAAGAATGCCCTCATTGTACTAA---------GCAAGGATCTGGACCAGCAGGTTGTGTAATGAGATCCCCTAATC--------ATTGGCAGGCTGATTGTACACATTTAGAGAACAGGATAATAATGACATTTGTAGAGTCTAATTCAGGATACATTCATGCTACTCTATTGTCCAAAGAAAATGCCTTGTGTACTTCATTGGCTATTTTGGAATGGGTGAGGTTATTTTCTCCTAAATCTTTACATACAGACAATGGTACTAATTTTGTAGCAGAGTCAGTAGCAAATCTGTTGAAATTCCTGAAGGTGACACATACTACAGGAATACCTTATCACCCAGAGAGCCAAGGCATTGTGGAAAGAGCAAACAGGACATTAAAAGAAAAAATTAAAAGTCATAGAGAAAATACTCAGACACTTGAAGCAGCATTACAACTTGCTCTCATTACTTGTAAC---AAAGGGAGGGAAAGTATGGGAGGACAAACTCCATGGGAAGTATTTATTACTAATCAGGCTCAAACAATACATGAAGAACTTTTATTACA-----ACAAGCACAATCTTCTAAAAAATTTT-----GTTTTTATAAAATTCCTGGTGAGCATAAT---------TGGAAGGGGCCCACCAGAGTGTTGTGGAAAGGTGATGGAG----CAGTAGTGGTCAATGATGAGGAAAAAGGAATAATTGCTGTGCCTTTAACCAGGACTAAATTATTAATAAGACCAAATTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Feline_Immunodeficiency_Virus_Domestic_Cat_San_Diego_Isolate -----------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAATTCGGGAAACTGGAAGGCGGGGCGAGCTGCAGCCCCAGTGAATCAA---------GTGCAGCAAACAGTAATGCCATCTGCACCTCCAATGGAGGAAAAATTATTGGATTTATAAATTACAATAAAGTAGGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTACATCATTAGAAAAGAGGCCAGAAATACTTATATTTGTGAATGGGTACCCTATAAAATTTTTATTAGATACAGGAGCAGATATAACAATTTTAAATAGGAGAGATTTTCAAGTAAAAAA---CTCTATAGAAAATGGAAGACAAAATATGATTGGAGTAGGGGGAGGAAAGAGAGGAACAAATTATATCAATGTGCATTTAGAGATTAGAGATGAAAATTACAAGACACAATGTATATTTGGCAATGTTTGTGTCTTAGAAGATAACTCATTAATACAACCATTATTAGGGAGAGATAATATGATTAAATTTAATATCAGGTTAG---TAATGGCTCAAAT---TTCTGATAAGATTCCAATAGTAAAAGTAAAGATGAAGGATCCTAATAAAGGACCTCAAATAAAACAAT-GGCCATTATCAAATGAAAAAATTGAAGCTTTAACAGAAATAGTAGAAAGACTAGAAAGGGAAGGGAAAGTAAAAAGAGCAGATCCAAATAATCCATGGAATACACCAGTATTTGCTATAAAAAAGAAAAGTGGAA---AATGGAGGATGCTCATAGATTTTAGAGAATTGAACAAATTAACTGAGAAAGGAGCAGAAGTCCAGTTGGGACTACCTCACCCTGCTGGTTTACAAATGAAAAAACAAATAACAGTATTAGATATAGGGGATGCATATTTCACCAATCCCCT---TGACCCAGATTATGCTCCTTATACAGCATTTACTTTACCTAGGAAGAATAATGCGGGACCAGGAAGAAGATTTGTGTGGTGTAGTCTACCACAAGGCTGGATTTTAAGTCCATTGATATATCAAAGTACATTAGATAATATAATACAACCTTTTATTAGACAAAATCCT---CAATTAGATATTTATCAATATATGGATGACATTTATATAGGATCAAACTTAAGTAAAAAGGAGCATAAAGAAAAAGTAGAAGAATTAAGAAAATTACTATTATGGTGGGGATTTGAAACTCCAGAGGATAAATTACAGGAAGAACCCCCATATAAATGGATGGGTTATGAATTACATCCATTAACATGGACAATACAACAGAAACAGTTAGAAATTCCAGA------AAAGCCTACATTAAATGAATTACAAAAATTAGCAGGAAAAATTAATTGGGCTAGCCAAACTATTCCAGAATTAAGTATAAAATCATTAACTAACATGACGAGAGGAAATCAAAACCTAAATTCAACAAGAGAGTGGACTGAGGAAGCTAGA---------------------------------------------------------------------------------------------------------------------------CTAGAAGTACAGAAGGCCAAAAGGGCTATTGAAGAACAAGTACAACTAGGATATTATGACCCTAGTAAAGAATTGTATGCTAAATTAAGCTTAGTGGGACCACATCAAATAAGTTATCAAGTATATCAGAAGTGTCCAGAAAAGA------TCTTATGGTATGGAAAAATGAGTAGGCAAAAGAAAAAGGCAGAAAATACGTGTGATATAGCGTTAAGAGCATGCTACAAAATAAGGGAAGAATCCATTATAAGAATAGGAAAAGAACC---AAGATATGAAATACCTACTTCTAGAGAAGCCTGGGAATCAAATTTAATTAATTCACCATATCTTAAAGCCCCACCTCCAGAAGTAGACTATATCCATGCTGCTTTAAACATAAAAAGAGCACTAAGTATGATAAAAGATCCTCCAATA------TCAGGAGCAGAAACGTGGTATATAGATGGAGGT---AGAAAGCTAGGAAAAGCAGCAAAAGCAGCCTATTGGACAGATACAGGAAAGTGGCAAGTAATGGAATTAGAA---GGTAGTAATCAGAAGGCGGAAATACAAGCATTATTATTGGCATTAAAGGCA---GGACCAGAGGAAATGAATATTATAACAGATTCTCAGTATAT------GATAAATATTCTTAGTCAACAACCAGATAAGATGGAAGGAATCTGGC---AAGAAGTTTTAGAAGAATTGGAAAAGAAAACAGCAATATTTATAGATTGGGTCCCAGGACATAAAGGTATTCCAGGAAATGAGGAAGTAGATAAGCTTTGTC------------------AAACAATGATGATAATAGAAGGGGATGGGATATTAGATAAAAGAACAGAAGATGCAGGATATGATTTATTAGCTGCAAAAGAAATACATCTATTACCAGGAGAGGTAAAAGTAATACCAACGGGAGTAAAACTAATGTTGCCTAAAGGACATTGGGGATTAATAATGGGAAAAAGCTCGATAGGGAGTAAAGGATTGGATGTATTAGGAGGGGTAATAGATGAAGGATA-TCGAGGTGAAATTGGAGTAATAATGATTAATTTATCAAAAAAATCAATCACTTTGTTGGAACAACAGAAGATAGCACAATTAATAATATTGCCTCATAAACATGAAGCATTAGAACAGG---GGAAAGTAGTAATGGATTCAGAGAGAGGAGAAAAAGGTTATGGGTCAACAGGAGTATTCTC------------CTCTTGGGTTGACAGAATTGAGGAAGCAGAA-ACAAATCATGA-AAAATTTCACTCAGATCCGCAATACTTAAGGACTGAATTTAATTTACCCAAGATGGTGGCAGAAGAGATAAGACGAAAATGCCCTGTATGTAGGAT---------TAGAGGAGAACAAGTGGGAGGGCAATTGAAGATAGGGCCTGGTA--------TCTGGCAAATGGATTGCACACACTTTGATGGCAAAATAATTCTTGTGGCTATACATGTGGAATCAGGATATATATGGGCACAAATAATCTCTCAAGAAACTGCTGATTGTACAGTTAAAGCTGTCTTACAATTATTGAGTGCTCATATTGTTACGGAGTTACAAACAGATAATGGACCAAATTTTAAAAATCAAAAGATGGAAGGAGTACTCAATTATATGGGTGTGAAACATAAGTTTGGTATCCCAGGAAACCCACAATCACAAGCATTAGTTGAAAATGTAAATCAGACATTAAAAGTCTGGGTTCACAAATTTTTGCCTGAAACAACCTCCTTGGATAATGCATTAGCTCTCGCTGTGCATTGTCTCAATTTTAAACAAAGGGGTAGAATAGGAGGGATGGCCCCTTATGAATTATTAGCACAACAAGAATCCTTAAGAATACAAGATTATTTCTCTGCAATACCACAAAAATTGCAAGC----------ACAATGGATTTATTATAAAGATCAAAAAGATAAGAAA---------TGGAAAGGGCCAATGAGAGTAGAATACTGGGGACAAGGAT----CAGTGTTATTAAAGGATGAAGAGAAGGGATATTTTCTTATACCTAGGAGACACGTAAAGAGAGTCCCAGAACCCTGCGCTCTTCCTGAAGGGGATGAGTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Feline_Immunodeficiency_Virus_Domestic_Cat_Subtype_C -----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAACCAGGGAAACTGGAAGAAGGGGCGAGCTGCAGCCCCGGTAAATCAA---------GTGCAGCAAGCAACAATGCCATCTGCTCCTCCAATGGAAGAGACATTGTTAGATTTATAAATTATAATAAAGTGGGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACTACAACATTAGACAGAAGACCTGAAATACTAATATTTGTAAATGGGTACCCTATAAAATTTTTATTAGATACTGGGGCAGATATAACAATTTTAAATAGGAGAGATTTTCAAGTAAAGAA---TTCTATAGAAAATGGGAAACAGAATATGATTGGAGTAGGTGGAGGAAAAAGAGGAACAAATTATTGTAATGTACATCTGGAAATCAGAGATGAAAATTATAAAACACAATGTATATTTGGCAATGTTTGTGTTTTAGAAGATAATTCACTAATTCAACCATTGTTGGGTAGAGATAACATGGTTAAATTTAATATTAGATTAG---TAATGGCTCAGAT---CTCAGATAAAATTCCCATAGTGAAAGTAAAAATGAAAGATCCTAATAGAGGACCACAAATAAAACAGT-GGCCACTGTCAAATGAAAAAATTGAAGCTTTAACAGAAATAGTAGAAAGATTAGAGAAAGAAGGAAAAGTAAAAAGAGCTGATCCAAATAACCCTTGGAATACACCAGTATTTGTTATTAAGAAGAAAAGTGGGA---AATGGAGAATGCTTATAGACTTTAGAGAGCTAAACAAATTAACTGAAAAGGGAGCAGAAGTCCAGCTGGGACTACCTCACCCTGCTGGATTACAGTTAAAGAAACAAGTAACTGTATTAGACATAGGGGATGCCTACTTTACCATTCCCCT---CGATCCAGATTATGCTCCTTACACAGCATTTACTTTGCCTAGAAAAAATAATGCAGGGCCAGGAAGGAGATATGTGTGGTGCAGTCTACCACAGGGATGGGTATTAAGCCCACTAATATATCAAAGTACACTGGATAATATAATACAACCTTTTATTAGACAAAATCCT---CAATTAGACATTTACCAATATATGGATGATATATATATAGGATCTAATTTAAGTAAAAAGGAACATAAAGAAAAGGTAGAAGAATTAAGAAAGTTATTATTATGGTGGGGATTTGAAACCCCAGAAGATAAATTACAGGAAGAACCCCCATATAAATGGATGGGTTATGAATTACATCCATTAACATGGACAATACAACAGAAACAATTAGAAATTCCAGA------GAGACCTACTTTAAATGAATTACAAAAATTGGCAGGGAAGATTAATTGGGCAGGTCAGATCATTCCAGATTTATCTATAAAAGCATTAACTAGAATGATGAGAGGTGATCAGAATTTAAATTCAATAAGAGAATGGACTGGTGAGGCCAAG---------------------------------------------------------------------------------------------------------------------------ATGGAAGTACAAAAAGCCAAAGAGGCAATTGAAAAACAGGCACAATTAGGATACTATGATCCTAATAAGGAAGTGTATGCAAAATTGAGTATAGTAGGGCCACACCAGATCTGTTATCAGGTGTATCATAAAAACCCAGAACAAA------TTTTATGGTATGGGAAAATGAGTAGGCAGAAGAAAAAGGCTGAAAATACTTGCGACATAGCTTTAAGAGCATGTTACAAGATAAGAGAAGAATCTATTGTAAGGATAGGAAAGGAACC---AATATATGAAATACCATCAAGTAGAGAAGCTTGGGAGTCAAATTTGATTAATTCACCATATCTAAAAGCTCCGCCACCTGAAGTAGAGTTTATCCACTCTGCCTTAAATCTAAAGAGAGCACTAAGTATGGTACAGGATAAACCCATC------TTAGGAGCAGAAACATGGTATATAGATGGAGGG---AGAAAGCGGGGAAAGGCAGCAAAAGCAGCTTACTGGACAAATACAGGGAAATGGCAGGTAATGGAAATAGAA---GGAAGCAATCAAAAGGCAGAAGTTCAAGCATTATTATTAGCATTAAAAGCT---GGACCAGAAGAGATGAATATAATAACAGATTCTCAATATAT------AGTAAATATTATTAGTCAACAACCTGATATGATGGAAGGAGTTTGGC---AAGAAGTATTAGAAGAACTGGAAAAGAAAGTAGCAATATTTATAGATTGGGTTCCAGGACATAAAGGCATTCCAGGAAATGAAGAAGTAGATAAGCTCTGCC------------------AAACAATGATGATTGTAGAAGGAGATGGAATATTAGAAAAAAGAGCAGAGGATGCAGGGTATGACTTGTTAGCTGCAAAAGAAGTACATTTACTGCCAGGAGAAGTAAAAGTAATTCCAACAGGAGTAAGATTAATGTTACCTACAGGACATTGGGGATTGATACTTGGAAAAAGTTCAATGAGCAGCAAAGGATTAGATGTGCTAGGAGGAGTGATAGATGAAGGATA-TAGAGGAGAAATTGGGGTAATAATGATTAACTTGTCAAGAAAATCAATAACTTTACAAGAGAAACAAAAGGTAGCACAATTAATAATACTACCATGTAAACATGAAAATTTAGAACAAG---GAGAAATAATAATGAATTCAGAGAGAGGAGAAAAGGGATATGGATCAACAGGAGTATTTTC------------CTCCTGGGTTGAAAGAATTGAAGAAGCAGAA-ATAAATCATGA-AAAATTTCATTCAGATTCACAGTACTTGAGGACTGAATTTAAGTTACCCAGAATGGTGGCTGAAGAAATAAAAAGAAAATGCCCTCTATGTAGAAT---------TAGAGGAGAACAGGTGGGAGGACAATTAAAAATTGGACCAGGAA--------TTTGGCAAGTGGATTGCACACATTTCAATAATAAAATAATTCTTGTGGCAATTCATGTCGAATCAGGATTCCTTTGGGCACAAATAATACCACAAGAAACAGCTGACTGCACAGTCAAAGCAATAATGCAACTCCTAAGTGCTCATAATGTTACAGAACTGCAAACAGACAATGGGCCAAATTTTAGAAATCAAAAAATGGAAGGTTTACTCAATTACATGGGAATAAAACATAAATTTGGAATACCAGGCAACCCTCAATCTCAAGCTTTGGTTGAAAATGCCAATAATACTTTAAAGTGTTGGATTCAGAAGTTTTTGCCTGAAACAACATCTTTAGACAATGCTTTGGCTCTCGCTCTGCATTGCCTTAATTTTAAACAAAGGGGTAGAATAGGGGGAATGGCCCCATATGAATTATTAACACAACAAGAATCATTAAGAATACAGGATTATTTTTCTCAAATTCCAAGCAAATTGCAAAG----------TCAGTGGATTTACTATAAAGATCAAAAAGACAAAAAT---------TGGAAAGGACCAATGAGAGTAGAGTATTGGGGACAAGGAT----CAGTGTTATTAAAGGATGAAGAGAGGGGATATTTTCTTGTACCTAGGAGGCACATACGGAGAGTCCCAGAACCCTGCACTCTTCCTGAAGGGGATGAGTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Feline Immunodeficiency Virus Palla''s Cat' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAAATAATCCTTGGAATACCCCTATTTTTTGTATAAAAAAGAAATCGGGGA---AATGGAGAATGTTAATAGACTTTAGAACTCTTAATGAGTTAACAGAAAAGGGTGCAGAAGTTCAGTTGGGACTGCCTCATCCGGCAGGATTACAAGAAAGGAAACAAGTAACAGTATTGGATATTGCAGATGCATATTTTACTATACCATT---GGATCCAGATTATGCACCTTACACTGCTTTTACTTTGCCCAAAGTAAATAATTCAGGTCCAGGAGAAAGATTTGAATGGTGTAGTTTACCTCAAGGATGGGTATTAAGCCCCTTGATTTATCAGAGTACATTAAATAATATTTTAAAACCATTCAGAGAACAGCATCCA---GAAATAGATTTATACCAATATATGGATGATATATATATAGGATCAGATTTAGGAAAAAAGGAGCATAAACAAATTGTAGAAGAATTAAGGAAATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Feline_Immunodeficiency_Virus_Puma_Subtype_A -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAAGGAGTAGGAGGAACTAACAGAGGAGAAAAATATATAAATGTACATTTTGAAGCATATTTTGATAAAGAAGTAAGATGTATTTGTAATGGAAAGATTTGTGTAATTCCCCAGAATAATTTATTAGAGCCGTTATTTGGGAGAGACAATATGAAATTGCTAGACATCAAGTTGG---TAATGGCTAATAT---TTCTACAAAAATCCCTATAGTAAAAGCAAAATTGGTAGATCCTAATAAAGGACCAAAAATAAAACAAT-GGCCTCTAACTAATGAAAAAATAGAAGCATTAACAGAAATAGTAGAGAGGTTAGAGACTGAAGGAAAGGTAAAAAGAGCAGATCCTAATAATCCTTGGAATACTCCAATTTTTTGCATAAAGAAGAAATCAGGAA---AATGGAGAATGTTAATAGATTTTAGAGAATTAAATAAATTAACTTTAAAAGGTGCAGAAGTACAATTAGGATTACCACATCCAGCAGGATTGTCTATGAGAAAACAGGTAACAGTACTAGATATAGGAGATGCCTATTTTACTATACCTTT---AGACCCTGATTATCAACCATATACAGCTTTTACTTTACCTAATAAAAATAATCAAGGACCAGGAAGAAGGTATGTATGGTGTAGTTTACCACAAGGATGGGTATTAAGTCCTTTAATATATCAAAGTACTTTAGATAATATTTTACAACCATGGAGAAAGAAATATCCT---AATATTGATGTATATCAATATATGGATGATATATATATAGGATCAGATTTCTCAAGATTGGAACATGAAAAAATTATACAAGAATTAAGAGACTTATTGATCTTTTGGGGATTTGAAACTCCTGAAGATAAATTACAACAAGAACCACCCTATAAGTGGATGGGATATACTTTATATCCTAATAAATGGACTATTCAAAAAACAAAATTAGATATTCCTGA------AGTTCCAACTTTGAATCAATTACAAAAATTAGCAGGAGTTATAAATTGGGCCACACAAAATGTAGGAGGGATAAAAATAAAGGCCTTAACTGAATTAATGAAAGGAAATCAACAATTAGATAGTTATAGACAGTGGACTCCAGAAGCTTTGGGACACTTACAAAAAATTAAAGCAGGAGAGCCAAAAGCAGTCACCTTAAGACAAGGTCCTAAAGAATCTTATAAAGATTTTATTGATAGATTGTTTCAACAAATAGATCAAGAACAAGCTTTAGAAGAAGTAAGAATAGCTAAAGAAGCTATAGAAAATTTAACAGACATGAGTTATTTTGATAATAAAAAACCTGTCTATTGTAAATTTAGTATTGTAGGTGTTCATCAAGTAGCATATATAGTATATCAAGATCAAGGAC------------AATTATGGATGGGGAGAATGAATAGACAGAAGAAAAAGGCAGAGAATACTTGTGATATTGTATTAAGAGCTATTAATAAAGTTAGGCAGGAAGCTATTGTCAGACTTGGGATAGAACC---TGTATATCAGATACCTTGTTCTAGAGAAATATGGGAATCTTATTTAATAACATCTATATATCTTAAGAATCCTCCACCCGAAGTACAGTTTATTCATGCCTCTTTGATGATGGCACGAATGTTAACTATGTTAACATCAGAACCTATA------GAGGGAATAGAAACATGGTTTATTGATGGAGGG---AGAAGGTTAGGAAAGAAAGCAATATCTGCATATTGGACTTCCGAGGGTAAAGAAAAATATGAGTATATAGAA---GGCAGTAATCAGCAAGCAGAAGTAAATGCATTACGGATGGCACTTGTAGAT---GGACCATCAGAAATGAATATTATCACAGATAGTCAATATAT------CATGAATGTATTAAAACAATATCCAGATAGTCTTTCTGGACTGTGGC---AAAAGATAATAGAGTTATTACAAAGTAAAATTAAAATATTTCTAGATTGGGTTCCAGGTCATAAAAATATTCCAGGAAATGTAGAAGTGGATAGAATATGTC------------------AAGAAAATATGATAATAGAAGGAGATGGAATAATAGATAAAAGAGAAGAGGATGCAGGATATGATTTGATAGCACAAGAGGATGTATTTCTTATGAAAGGAGAAGTAAGAATTGTTCCAATAAATGCAAAAATAATGCTCCCTGAAGGAACTTGGGGATTAATCATTGGAAAATCTTCTATAGGGAAGTTAGGTTTAGATGTATTAGGTGGAGTAATAGATCAAGGATA-TAGAGGAGCTTTAAATGTTATACTTAGTAATTTGACTAGACATGGAGTAAAAATCAGTAAAGGACAAAAAATAGCACAATTAATAATATTGCCTTATGTAACTGAGAGTTTGGAAAAAG---GAAAAATGATAATGGATTCACAAAGAGGTGAAGGAGGATTTGGATCAACAGGAGCTTATGTAACACAAATTTCATCATGGATGGATAATATAGAAAAAGCAGAA-GATGATCATGA-TAAGTTTCATAGTGATGTGGTTTATTTAAAACAGCGATTTGGAATTCCTAGACAAGTAGCAGAAGAAATAATTAGAAAGTGCCCATTATGTATGAT---------AAAGGGAGAAGTCTCTTATGGGCAATTAAAAATAGGAGAAGGTA--------TATGGCAAATAGATTGTACTCATTTAGAAAAACTTATATTATTAGTATGTATACAAACCACTTCTGGATTTGTGGTAGTATACAATCTAAAAAGGGAAGATGCTAAAGAGACTGGATTAGCCTTTTTGAATTTGTTTAGCCAATATTATGTCACTGAGATACAAACTGATAATGGACCAAACTTTGCTAATGAGAGGATTACTGGTATTTGTTTTCATTTTGGAATAAAGCATAAGAAGGGAATTCCAATAAATCCTCAGTCTCAAGCATTAGTTGAAAATTTCAATCGAACATTAAAAGTATGGGTAGACAAATTTAAAGAAGTTACTGAAACTTTAGAAGCTGCAGTACAACTTGCAGTTCATGCTCTCAATCATAAAAGAAAGGGTGGATTAGGGGGTATTACACCCTATGAGCTTTATGTACAACAAGAATCTATCAGAATACAAGAACTATATTCCTCTAT-------CCCACACAAATTTTTGAAAGATTCTTGGATTTATTATAAGGATAGGAAGGATAAACTA---------TGGAAAGGTCCCACGCAAGTCTATTATTGGGGTGAAGGAG----CAGTATTAATTAAAGATGAAAATAATAAGTATCTTCTCATTCCTAGAAGAAGGATAAGGAGAGTACCTGCTCCTAAAGATCTAACACAAGAGGATGGCTTCAATCAGACAGAACAGGAGAGCAATAATGCCTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Feline_Immunodeficiency_Virus_Puma_Subtype_B --------------------------------------------------------------------------------------------------------------------------------------------------CACAGATTGTTATCAAATGACTTCGGGAAACGGAAAGCAGGGGGGAGCTGCAACCCCCCAGAGAAGTCAAATGCAGGTGCAGCAATCTGTACTTCCAACTGCTCCTCCGTTGGAGGAGATGCCACTCCTCCAACTATAAAAGCAATATGGAGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTCCCGACCCCGAGTTGAGGCCTGGATTAATGGAAGAAAGATAAATTTTTTATTAGATTCAGGAGCGGATATATCAGTTATCAATGAAAGAGATTGGGAACCAGGAAA---TTCAATTAGAGAGGGACCTCAACATATGACAGGGGTAGGAGGAGTACAAAATGGGATAAGATTTTCACATGTACATATTGAAAT---ACATACAGAAAAGGAGGGAAAATGTTGTCAAGGATATATGTGTGTATTACCAGATAATAATCTAGTAGATAATTTATTAGGTAGAGATAATCTACAAAAGTTAGGGGTAACAATGG---TAATGGCTATGAT---ATCAGATAGAATACCAATAATTAAGGCAAAAATGAAAGATCCAAATAATGGACCTAAAGTTAAACAGT-GGCCATTATCACAAGAAAAGATTATGGCACTAACTGAAATAGTGGAAAGATTAGAAAAGGAAGGAAAGGTAAAAAGAGCAGATCCTAATAATCCATGGAATACTCCAATATTTTGTATAAAGAAGAAATCAGGAA---AATGGAGAATGTTAATAGATTTCAGGGAACTAAATGCAAAAACGGAAAAAGGAGCAGAGGTGCAACTTGGGTTACCTCACCCAGCAGGATTACAGAGAAGGAAAAATGTAACAGTGTTAGATATAGGAGATGCTTATTTTACTATCCCTCT---AGACCCAGACTATCAGCAATATACTGCATTCACACTGCCTTCAAAAAATAATCAAGGGCCAGGACGAAGGTATGTGTGGAAGAGTCTCCCTCAAGGATGGGTATTAAGTCCTTTGATATATCAAAGTACTTTAGACAACATTTTACATCCTTTCCGCAAAAAATATAAAAATGAAATAGACCTATATCAATATATGGATGACATTTATATAGGATCAGATATTCCTATTAAACAGCATAGAAAGGTGGTATTAGAGCTTAGACAAATGCTGTTGTGGTGGGGGTTTGAGACACCAGAAGATAAATTACAAGAATCTCCCCCTTTTAAATGGATGGGGTATGAACTTCATCCACAGGGATGGAAGATTCAAACAACAAAATTGGAAATACCAGA------ATATCCTACTTTAAATGAGTTACAAAAACTGATAGGAAAAATAAATTGGGCCACACAAATAATAGGAGGGTTACCTATTAGAAATCTGACAGACATGATGAAGGGAGATACAGAGTTAAATTCAAGAAGAGAATGGACCCCTGAAGCGAGG---------------------------------------------------------------------------------------------------------------------------CAAGAAGCAGAAGAAGCTAAGAAAGCAATAGAGAATTTACCCAATGGAAATTATTATGATAAAGAAAAAGAATTATATGCCATTCTTAGTATTAACGGACCATTGCAGATAAGTTATATGGTATATCAATTAGAAGGAATAAAAAAGCTTCCTTTATGGTATGGTAGAATGAATAGAATAAGAAGAAAATTAGAAAATACATGTGATCTAGCTTTAAGAGCAATTAATAAGATAAAAGAAGAAGCAATTATTAGGTTAGGAAAAGAGCC---TATATATCAGATACCCTGCTCAAACGAAAATTGGGAATCTTATTTAATGTCTAGTAGATATTTGAAAAGCATCCCACCAACAGTAGAATTTATCAATAGCAGTTTAATGATTGAAAGACATTTAGCATGTATAAAAGGAGAACCTATAAATGAGGAAGGAGTAGAAACCTGGTATATTGATGGAGGA---AGAAAGAAAGGACAAAAGGCAAGAGCAGGATGGTGGAAAAATAACCAGGAATGGCAAATTATGGAATTGGAG---GGATCTAATCAAACAGCAGAAGCACAAGCATTAAATATGGCCCTAAAGGCA---GGACCAGAAAAAATGAATATTATAACTGATAGTCAATATGTTTATAATATGGTCATGGCTAGGCCGGAACC---------TACAGACCCCTTATGGAAAGAAATAATTGAAGAACTACAAAAGAAAGAAGCAATCTTTTTAGATTGGGTTCCAGGACATAAAGGAATTCCTGGAAATAAAGAAGTAGATGAAATAGTAC------------------AATGTGGATTGATTATTGAGGGAGAAGGAATCTTACAAAAAAGAGAAGAAGATGCAGGTTATGATTTGGTAGCAGCAGAAAAAATATATATGCTTCCTTCTGAAACTAGGAAAATACCAATAGACTGTAAACTAGAATTACCAAAAGGGACAGTAGGATTGATTTTGGGAAAGTCCTCTATAGGAAGTAAGGGATTAGACGTTTTAGGAGGAGTGATAGATTCAGGGTA-TCGAGGAAAACTGTCAGTAATAATGATAAATCTGTCAAGAAAAGGACAATGGATCGAACAAGGACAGAAAGTAGCCCAATTATTAATCATGCCAGTACAACATGAATTATTAGAACAAG---GAAAGGTATCATTAAATTCAGAACGAGGAGAACAGGGATTTGGAAGTACAGGCATATTTGCTCTACA------ATCTTGGATGGATAATATTGAAAAGGCAGAA-ATGGAACATGA-AAAATTTCATACAGATGAAAAGAGTTTACAAGAACTATTTGGGATCCCAAAAGTAGTAGCCAATGAAATTCTACAGAAATGCACAATATGTAGAATGTCCGGATCAGGAGGGGGTCATAAAGGGGGAAAATTAAAAATGGGACCCGGAA--------CGTGGCAAATAGATTGTACACATCTAGAAGGACAAATATTGTTAGTGGCTATAAATGTGGAGTCCAATCTTATTTGGACAAAGATACTAAAACAAGAAAATGCTAAAGAAACAGTACTTGCAATATTAGAGCTTATACAAACACATAATGTCCTAGAGGTTCAAACTGATAATGGGCCAAATTTTGCCAATTCAAGAATGGAAGGCCTTACTTCCTTTTTGGGAATAAATCATAAATTTGGTATCCCCATGAATCCACAAAGTCAAGCACTAGTGGAGAATACTAATAATGTTTTGAAACAATGGATAAAAAAGTTTAGGCAAGAAGTAGAAACATTGCACGCAGCTGTTGCATTGGCTACCTTTGCTCTCAATAAAAAAAGAAAGGGTAATATAGGGGGTATGACTCCATACGAGTTATATATTTGGCAAGAAAATAACTCTATACAACAATATTACTCCAGTAT----TCTTTTTAAAAAATTTGGAAAAGAGCAATGGATATATTATAAAGATATTAAAGATAAAGAA---------TGGAAAGGTTCGGTACCTGTGATATATTGGGGAGAAGGAT----CAGTGTTAATTAAAGAGCCTGAAAAAGGACTCTTCTTGGTTCCTAACAGAAGAATTAGGAGAGTGCCTCCCCCGCAAGAGATTCAGGTAAGTGATGCAACCTTACAGAATACAGAGTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Human_Immunodeficiency_Virus_1_Group_M --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAAAATTTGGCCTTCCAGCAA---------AGGGAGGCCAGGAAATTTTCCTCAGAGC------------------AGACCAGAGCCGACAGCCCCACCAGCAGAGA------------------------------------------------------------------------------------------------------------------------------TCTTTGGGATGGGGGAAGAGATAACCTCCCCTCCGAAACAGGAGCAGAGAGACAAGGAACAGGCC---------------------------------------------------CCACCCTCAGTTTCCCTCAAATCACTCTTTGGCAACGACCAGTAGTCAAAGTAAAAATAGAAGGACAGCTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGA------------CATAAATTT---GCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTCATCAAAGTAAGACAGTATGATCAGATACTTATAGAAAT---------------TTGTGGAAAAAAGGCTATAGGTACAGTATTAGTAGGGC---CTACACCTGTCA------ACATAATTGGAAGAAATATGTTGACCCAGATTGGTTGTACTTTAA---ATTTCCC---------AATTAGTCATGTTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGTCCAAAGGTTAAACAAT-GGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAGATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGGAAATTAGTAGATTTCAGGGAGCTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCAGCGGGCCTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGACGCATATTTTTCAGTTCCTTT---AGATGAAAACTTTAGAAAGTATACTGCGTTCACCATACCTAGTACAAACAATGAGACACCAGGAATCAGGTATCAGTACAATGTGCTTCCGCAGGGATGGAAAGGATCACCGGCAATATTCCAGAGTAGCATGACAAAAATCTTAGAGCCCTTTAGGTCAAAAAATCCA---GAAATAATTATCTATCAATACATGGATGACCTGTATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAACAAAAATAGAAGAGTTAAGAGCTCATCTGTTGAGCTGGGGATTAACTACCCCAGACAAAAAGCATCAGAAAGAACCGCCATTTCTTTGGATGGGATATGAACTTCATCCTGACAAGTGGACAGTCCAGCCTATAATACTGCCAGAAAAAGA------AAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAACTAAATTGGGCAAGTCAAATTTACCCAGGGATTAAAGTAAAGCAATTGTGTAAGCTCCTCAGGGGAGCCAAAGCACTAACAGATATAGTAACACTGACTGAGGAAGCAGAA---------------------------------------------------------------------------------------------------------------------------TTAGAATTGGCAGAAAACAGGGAGATTCTAAAAGAACCTGTGCATGGGGTATACTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACATATCAAATTTATCAAGAGCCATTTAA---AA------ATTTAAAAACAGGAAAATATGCAAGAAAAAGGTCTGCTCACACTAATGATGTAAAACAATTAACAGAAGTGGTGCAAAAAGTGGTCATGGAAAGCATAGTAATATGGGGAAAGACACC---TAAATTTAAACTACCCATACAAAAAGAAACATGGGACACATGGTGGATGGACTATTGGCAGGCTACCTGGATTCC---TGAATGGGAGTTTGTCAATACCCCTCCTCTAGTAAAATTATGGT---ACCAGTTAGAGAAAGACCCCATA------GCAGGAGTAGAGACTTACTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGGAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTGTTTCCCTAACTGAGACAACAAATCAAAAGACTGAACTACATGCAATCCTTTTAGCTTTGCAGGAT---TCAGGATCAGAAGTAAATATAGTAACAGACTCACAGTATGC------ATTAGGAATCATTCAGGCACAGCCAGACAGGAGTGAATCAGAATTAGTAAATCAAATAATAGAGAAGCTAATAGGAAAGGACAAAGTCTACCTGTCATGGGTACCAGCACACAAAGGAATTGGAGGGAATGAACAAGTAGATAAATTAGTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCT-GGAATCAG------GAAGGT------------------GCTGTTTTTAGATGGGATAGATAAAGCTCAA-GAAGAACATGA-AAGATATCACAGCAATTGGAGAACAATGGCTAGTGATTTTAATCTGCCACCTATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAACT---------AAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGGA--------TATGGCAATTAGATTGCACACATCTAGAAGGAAAAGTAATTCTGGTAGCAGTCCATGTAGCCAGTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAGGCAGCATACTTTCTGCTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAGTACACACAGACAATGGCAGCAATTTCACCAGCGCTGCATTTAAAGCAGCTTGTTGGTGGGCAAGTATCCAACAGGAATATGGGATCCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAGGAATTAAAGAAAATCATAGGACAGGTAAGAGAGCAAGCTGAACACCTTAAAACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAGAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAA---ACAAATTACAAAAATTCAAAA----TTTTCGGGTTTATTACAGGGACAGCAGAGATCCAATT---------TGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGG----CAGTAGTAATACAG---GACAATAGTGATATAAAAGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATG---GAAA------------------------ACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Human_Immunodeficiency_Virus_1_Group_O --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAAATACTGGCCTCCGGGGGG---------CACGAGGCCAGGCAATTATGCACAGAGA------------------CAAGTGCCCCCATCAGCCCCTCCAATGGAGG---------------------------------------------------------------------------------------------------------------------------------------------------------AGGAAATGAAGGGACAAGAGAATCAGAAGGGGGATCCGAACGAACTC------------------------------------------TATCCGTTTGCCTCCCTCAAATCCCTCTTTGGGACAGACCAGTAGTTACAGCAAGGGTTGGGGGCCATCTATGTGAAGTTTTGCTGGACACAGGGGCAGATGATACAGTACTAAACAA------------CATACAATT---GGAAGGAAAATGGACACCAAAAATGATAGGGGGTATAGGAGGTTTTATAAAAGTAAGACAATATAATGATGTGACAGTAGAAAT---------------AGAGGGAAGAGAAGTACAGGGAACAGTATTGGTGGGAC---TTACTCCTGTTA------ATATTATTGGAAGAAATATATTGACAGGATTAGGCTGTACACTAA---ATTTCCC---------TATAAGCCCCATAGCCCCAGTGCCAGTAAAACTGAAACCAGGAATGGATGGACCAAAATTAAAACAAT-GGCCCCTATCTAAAGAAAAAATAGAAGCCTTGACAGCAATATGTCAGGAAATGGAACAAGAAGGAAAAATTTCAAGAATAGGACCTGAAAATCCTTATAATACACCTATCTTTGCTATAAAAAAGAAAGATAGTAGTAAGTGGAGAAAGCTGGTAGATTTTAGGGAATTAAACAAGAGAACACAAGATTTCTGGGAGGTACAGTTAGGTATCCCACACCCGGGGGGTTTAAAGCAGAAGCAATCTGTTTCAGTCCTAGATGTAGGAGATGCTTATTTCTCATGCCCCTT---AGACCCAGATTTCAGAAAATATACTGCTTTCACTATTCCTAGTGTAAACAATGAGACTCCAGGAACAAGATATCAATACAATGTCCTCCCGCAAGGATGGAAGGGGTCACCAGCTATATTCCAAAGTTCAATGATAAAAATTCTTGATCCATTTAGGAAAAACAACCCA---GAATTAGAAATTTGTCAGTACATGGATGACCTATATGTAGGATCAGATTTACCCCTGACAGAACATAGAAAAAAGGTAGAATTGCTTAGAGAACACTTATATCAGTGGGGATTCACTACCCCTGATAAAAAACATCAAAAGGAACCTCCCTTTCTGTGGATGGGGTATGAACTCCATCCAGACAAATGGACAGTACAGCCCATCCAATTGCCTAACAAGGA------GGTATGGACAGTAAATGATATACAAAAACTAGTAGGAAAGTTAAATTGGGCAAGTCAAATCTATCAAGGAATTAGAGTAAAAGAATTGTGTAAGTTAATTAGAGGCACCAAGTCATTAACAGAAATAGTACCTTTAAGTAGAGAAGCAGAG---------------------------------------------------------------------------------------------------------------------------CTGGAACTAGAAGAGAACAGAGAAAAGCTAAAGGAGCCAGTGCATGGTGCATACTATCAGCCTGACAAAGATTTATGGGTTAATATTCAGAAGCAAGGAGAAGGGCAATGGACTTATCAGATATATCAGGATGAACATAA---AA------ACCTCAAAACAGGAAAATATACTAGGCAAAAGGCCTCCCACACAAATGATATAAGACTATTAGCAGAAGTAATCCAGAAGGTGTCTCAAGAATCTATAGTTATCTGGGGAAAATTGCC---TAAATTTAAGCTGCCAGTTACTAAAGAGACTTGGGAAACATGGTGGGCAGACTATTGGCAAGCCACTTGGATTCC---AGAATGGGAATTTGTCAGCACACCCCCATTGATCAAATTATGGT---ACCGGTTAGAAAGTGAACCTATT------ATGGGGGCAGAAACATATTATGTAAATGGAGCAGCTAATAGAAATACAAAACTAGGAAAGGCAGGATATGTTACAGAACAAGGGAAACAAAAGATAATAAAATTAGAGGAGACCACCAATCAAAAGGCTGAATTAATGGCAATATTATTAGCCTTACAGGAT---TCCAAGAAAACAGTAAACATAGTAACAGATTCACAATATGC------ACTGGGCATCATCTCCTCCCAACCTACACAGAGTGAATCCCCTATAGTTCAGCAGATAATAGAGGAACTAACAAAAAAGGACCAGGTATATCTTGCATGGGTTCCTGCTCATAAAGGCATAGGAGGAAATGAAAAAATAGATAAGTTAGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAG-GATATTAG------AAGAGT------------------CCTATTCCTAGAAGGGATAGACCAGGCACAA-GAAGATCATGA-AAAGTATCATAGCAATTGGAGAGCATTAGCTAGTGACTTTGGACTACCACCAGTGGTAGCCAAGGAAATCATTGCTAATTGTCCTAAATGTCATAT---------AAAAGGGGAAGCAACTCATGGTCAGGTAGACTACAGTCCAAAAG--------TATGGCAAATAGATTGCACACATATAGAAGGCAAAGTCATAATAGTCGCTGTTCATGTGGCAAGTGGGTTTATAGAAGCAGAAGTGATACCAGCAGAAACGGGACAAGAAACTGCCTACTTCCTGTTAAAATTAGCTGCAAGATGGCCTGTTAAAATAATACATACAGACAACGGGCCTAATTTTACAAGTGCAACCATGAAGGCTGCATGTTGGTGGACCAACATAAAACATGAGTTTGGAATACCATATAATCCACAGAGTCAAGGAGTAGTAGAAGCCATGAATAAGGAATTAAAATCAATTATACAGCAAGTGAGGGATCAAGCAGAACACTTAAGAACAGCAGTACAAATGGCAGTATTTGTTCACAATTATAAAAGAAAAGGGGGGATTGGGGGGTACACTGCAGGAGAAAGGATAATAGACATGTTAGCATCACAAATACAAACAACAGAATTACAAAA---ACAAATTTTTAAAATTCAAAA----ATTTCAGGTCTATTACAGAGACAGCAGAGATCCTATT---------TGGAAAGGACCGGCACAGCTCCTGTGGAAAGGTGAAGGAG----CAGTAGTCATACAA---GATAAAGGAGACATTAAGGTAGTACCAAGAAGGAAAGCAAAAATAATTAGACATTATG---GAAA------------------------ACAGATGGCAGGTACTGATAGTATGGCAAGTGGACAGACAGAAAGTGAAAACGTGG-----AACAGCCTGGTGAAATACCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA Human_Immunodeficiency_Virus_2 -----------------------------------------------------------------------------------------------------------------------------------------------------TTTAGGGTTGGGC---CCACGGGG------------AAAGAAGCCTCGCAACTTCCCCGTGACC------CAAGCCCCTCAGGGGCTGATACCAACAGCACCTCCGGCAG------------------------------------------------------------------------------ATCCAGCAGCGGAACTGTTGGAGAG-------------------------ATATATGCAGCAAGGGAGAAA-----GCAGAGGGAGCAGAGGGAGAGACCATACAAAGAGGTGACGGAGGACTTGCTGCACCTCGAGCAGAGAGAGACACCTCACAGAGAGGAGACAGAGGACTTGCTGCACCTCAATTCTCTCTTTGGAAAAGACCAGTAGTCACAGCGTACATCGAGGATCAGCCGGTAGAAGTCTTACTAGACACAGGGGCTGATGACTCAATAGTAGCAGG------------AATAGAATT---AGGGGACAATTACACTCCAAAAATAGTAGGGGGAATAGGGGGATTTATAAACACCAAAGAATACAAAAATGTAGAAATAAAAGT---------------ACTAAATAAAAGAGTAAGAGCCACCATAATGACAGGAG---ATACCCCAATCA------ACATCTTTGGCAGAAATATTCTGACAGCCTTAGGCATGTCATTAA---ATTTACC---------AGTTGCCAAGATAGAGCCAATAAAAGTAACATTGAAGCCAGGGAAAGATGGACCAAGGCTGAAACAAT-GGCCCCTAACAAAAGAGAAAATAGAAGCACTAAAAGAGATCTGTGAAAAAATGGAAAAAGAGGGCCAGCTAGAAGAGGCACCTCCAACTAATCCTTATAATACCCCCACATTTGCAATTAAGAAAAAGGACAAGAACAAATGGAGGATGCTGATAGATTTTAGAGAACTAAATAAGGTGACTCAAGATTTCACAGAAATTCAGCTAGGAATTCCACACCCGGCAGGACTAGCCAAAAAGAAAAGGATCTCTATATTAGATGTAGGGGATGCCTATTTTTCCATACCACT---ACATGAAGATTTTAGGCAGTATACTGCATTTACCCTACCAGCAGTAAACAATATGGAACCAGGAAAAAGATATATATATAAAGTCTTGCCACAAGGATGGAAGGGATCACCAGCAATTTTTCAATACACAATGAGGCAAGTCTTAGAACCTTTCAGAAAAGCAAACCCA---GATGTCATTCTCATCCAGTACATGGATGATATCTTAATAGCTAGTGACAGGACAGGTTTAGAGCATGACAAAGTGGTCCTGCAGCTAAAAGAACTTCTAAATGGCCTAGGGTTTTCTACTCCAGATGAGAAGTTCCAAAAAGACCCTCCATTTCAATGGATGGGCTGTGAACTATGGCCAACTAAATGGAAGCTGCAGAAACTACAACTGCCCCAGAAAGA------CATATGGACAGTCAATGACATCCAAAAGCTAGTGGGAGTCTTAAATTGGGCGGCACAAATCTATTCAGGAATAAAAACCAAACACTTATGTAGACTAATTAGAGGAAAAATGACACTCACAGAAGAAGTGCAGTGGACAGAACTAGCAGAA---------------------------------------------------------------------------------------------------------------------------GCAGAGCTAGAAGAAAACAAAATTATCTTGAGCCAGGAACAAGAAGGATATTATTACCAAGAAGAAAAAGAATTAGAGGCAACAATCCAAAAAAGCCAAGGACATCAATGGACATACAAAATACACCAGGAAGAGAAAA------------TCCTAAAAGTAGGAAAGTATGCAAAGATAAAAAATACCCATACCAATGGGGTCAGATTACTAGCACAGGTAGTTCAGAAAATAGGAAAAGAGGCACTAGTCATTTGGGGACGGATACC---AAAATTTCACCTGCCAGTGGAGAGAGAGACCTGGGAGCAGTGGTGGGATAACTACTGGCAAGTGACATGGATCCC---AGAGTGGGACTTTGTATCTACCCCACCACTGGTCAGGTTAACAT---TTAACCTAGTAGGAGATCCTATA------CCAGGCGCAGAGACCTTCTACACAGATGGATCATGCAATAGACAGTCAAAAGAGGGAAAAGCAGGATATGTAACAGATAGAGGAAAAGACAAAGTAAAAGTATTAGAACAAACTACCAATCAGCAGGCAGAATTAGAAGTCTTTCGGATGGCACTGGCAGAC---TCAGGCCCAAAGGTTAATATCATAGTAGATTCACAGTATGT------AATGGGGATAGTAGCAGGCCAGCCAACAGAGTCAGAAAATAGAATAGTGAACCAGATCATAGAAGAAATGATAAAGAAGGAAGCAGTCTATGTTGCATGGGTCCCAGCCCATAAAGGCATAGGAGGAAACCAGGAAGTAGACCATTTAGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAA-GGCATCAG------ACAAGT------------------ATTATTCCTGGAAAAGATAGAGCCCGCTCAA-GAGGAACATGA-AAAATATCATAGCATTATAAAAGAACTAACCCATAAATTTGGAATACCCCTTCTAGTAGCAAGACAGATAGTAAACTCATGTGCCCAATGCCAACA---------GAAAGGAGAAGCCATACATGGGCAAGTAAATGCAGAAATAGGCG--------TTTGGCAAATGGACTACACACACTTAGAAGGAAAAATCATTATAGTAGCAGTACATGTTGCAAGTGGATTCATAGAAGCAGAAGTCATCCCACAGGAATCAGGAAGGCAGACAGCACTCTTCCTATTAAAACTGGCCAGTAGGTGGCCAATAACGCACTTGCACACAGACAATGGCCCCAACTTCACTTCACAGGAAGTGAAGATGGTGGCATGGTGGGTAGGTATAGAACAATCCTTTGGAGTACCTTACAACCCACAAAGCCAGGGAGTAGTAGAAGCAATGAATCACCACCTAAAGAATCAGATAAGTAGAATTAGAGAACAGGCAAATACAATAGAAACAATAGTACTGATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACCCCAGCAGAAAGACTAATCAACATGATTACCACAGAACAAGAAATACAATTCCTCCAAAG---AAAAAATTCAAATTTTAAAAA----TTTCCAGGTCTATTACAGAGAAGGCAGAGATCAGCTG---------TGGAAAGGACCTGGTGAACTACTGTGGAAGGGAGAAGGAG----CAGTCATAGTCAAG---GTAGGGACAGACATAAAAGTAGTACCAAGAAGGAAGGCCAAGATTATCAGGGACTATGGAGGAAGACA---------------------GGAACTGGATAGTAGTCCCCACCTGGAGGGTGCCAGGGAGGATGGAGAAATGGCATGCCCTTGTCAAGTACCTGAAATACAGAACAAAAGACCTAGAGGAGGTGCGCTATGTTCCCCACCACAAGGTGGGATGGGCATGGTGGACTTGCAGCAGGGTAATATTCCCACTACAAGGAAAAAGTCATCTAGAAATACAGGCATATTGGAACCTAACACCAGAAAAAGGATGGCTCTCCTCTCATGCAGTAAGATTAACCTGGTATACAGAAAAGTTCTGGACAGATGTTACCCCAGACTGTGCAGACATCCTAATACATAG Jembrana_Disease_Virus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATTAGAAAAATATAAAGCCCTTAAGGAAATTGTTGAGGAACTACTAAAAGATGGAAAAATCTCTAGAACCCCTTGGGATAATCCTTTCAATACCCCTGTTTTTGTAATAAAAAAGAAAGGGGGAAGTAAGTGGAGAATGCTAATGGATTTCAGGGCCTTAAATAAAGTGACAAACAAAGGACAAGAATTCCAAATCGGGCTGCCATACCCCCCAGGAATTCAGCAATGTGAACATATAACAGCTATAGACATAAAAGATGCCTACTTTACCATCCCTTT---AGATGAGAATTTTAGACAATACACTGCTTTCTCGGTGGTCCCGGTGAATAGAGAAGGGCCTCTAGAAAGATATCATTGGAATGTGTTACCTCAAGGGTGGGTGTGTAGCCCTGCCATATATCAAACAACCACTCAGGAGATAATTGCAGAGATAAAAGATAGATTTCCT---GACATTGTGCTCTATCAATATATGGATGACCTTTTAATTGGATCAGACAGACC------AGACCATAAAAGGGTGGTGAGTGAAATTAGGGAAGAATTAGGGGCTTATGGTTTTAAAACTCCAGAAGAAAAAATCCAGGAAGAACAGGTTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Maedi-Visna Virus' -----------------------------------------------------------------------------------------------ATGCCATCATTGTGGAAAAAGAGGACATATGCAAAAGGACTGCCG---------------GCAGAAGAAACAGCAGGGAAACAACAGGAGGGGGCCACGTGTGGTGCCGTCCGCGCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTATGTTGTAACAGAAGCACCACCCAAAATAGAAATAAAAGTAGGAACAAGGTGGAAAAAATTATTAGTAGATACAGGGGCAGATAAAACTATAGTAACATCCCATGATATGTC------------AGGGATACCAAAGGGAAGGATAATATTACAGGGCATAGGGGGAATAATAGAAGGAGAAAAATGGGAACAAGTACACTTGCAATA---------------TAAAGATAAAATAATCAGAGGTACCATAGTGGTGTTAGCTACGAGTCCGGTAG------AAGTATTAGGAAGAGATAATATGAGAGAATTGGGAATAGGATTAA---TTATGGCAAATTTAGAAGAAAAGAAAATTCCCAGTACAAGAGTAAGATTAAAAGAGGGATGTAAGGGACCCCACATAGCGCAAT-GGCCTTTGACGCAAGAAAAATTAGAGGGATTAAAAGAAATAGTAGACAGATTAGAGAAGGAAGGGAAAGTAGGAAGAGCGCCCCCACACTGGACTTGTAATACCCCTATATTTTGTATTAAGAAGAAATCAGGAA---AATGGAGGATGTTAATAGATTTTAGAGAATTAAATAAGCAAACAGAAGATTTAGCAGAAGCACAGTTAGGGTTACCGCATCCAGGAGGATTACAGAGAAAGAAACATGTAACAATATTAGATATAGGAGATGCATATTTTACAATACCATT---ATATGAGCCATATAGACAATATACATGCTTTACCATGTTAAGTCCAAATAATTTAGGACCATGTGTAAGATATTATTGGAAAGTGTTACCACAAGGATGGAAATTAAGTCCTGCAGTGTATCAATTTACAATGCAAAAAATATTAAGAGGATGGATAGAAGAACACCCT---ATGATACAATTTGGAATATACATGGATGATATCTATATAGGGAGTGATTTAGGACTAGAAGAGCACAGGGGTATCGTGAACGAACTAGCATCATATATAGCGCAATATGGATTCATGCTGCCTGAAGATAAGAGGCAAGAAGGATACCCGGCTAAATGGCTTGGATTTGAATTGCATCCGGAGAAATGGAAATTTCAAAAACATACGCTCCCAGAGATTACAGAAGGACCCATAACCTTGAATAAACTACAGAAATTAGTAGGAGATTTAGTTTGG---AGACAATCCCTAATAGGAAAAAGCATCCCAAATATCTTAAAATTAATGGAAGGAGATAGGGCTTTACAAAGTGAAAGATACATAGAGAGTATACATGTA---------------------------------------------------------------------------------------------------------------------------AGAGAATGGGAAGCCTGTAGACAAAAGCTGAAGGAA---ATGGAAGGAAATTATTATGATGAAGAGAAGGATATCTATGGGCAACTAGATTGG---GGAAATAAAGCAATAGAATACATAGTATTTCAAGAAAAAGGAAAACCTT---------------TATGGGTAAATGTAGTACATAGTATTAAGAATTTGAGTCAAGCCCAACAAATTATCAAAGCAGCACAAAAACTGACACAAGAAGTAATAATAAGAACAGGCAAGATACC---CTGGATTTTGTTGCCGGGAAGGGAAGAAGATTGGATATTAGAGTTACAAATGG---GAAACATAAATTGGATGCC------ATCATTTTGGTCATGTTATAAAGGCTCGGTGAGGTGGAAAAAGAGGAATGTAATAGCGGAAGTAGTC---------CCAGGACCAACATATTATACCGATGGAGGA------AAGAAAAATGGGCGGGGAAGCCTGGGGTATATTACCTCCACAGGTGAAAAGTTTAGAATACATGAAGAA---GGGACAAATCAGCAGTTAGAATTGAGGGCCATAGAAGAGGCATGTAAACAG---GGACCAGAAAAAATGAATATAGTAACAGATAGCAGGTATGCATATGAATTTATGTTGCGGAACTGGGACGAAGAAGTAATAAGAAACCCTATACAAGCGAGAATCATGGAATTAGTGCATAATAAAGAAAAAATAGGGGTACATTGGGTGCCTGGACACAAGGGGATTCCTCAAAATGAAGAAATAGATAGGTATATCT---------------CAGAAATATTTTTAGCAAAAGAGGGAAGAGGGATTTTACAAAAAAGGGCAGAAGATGCTGGATATGACTTAATATGTCCACAGGAGATAAGCATTCCGGCGGGGCAAGTGAAAAGGATAGCAATTGACTTGAAAATAAATTTGAAAAAGGACCAGTGGGCCATGATAGGGACCAAAAGCAGTTTTGCAAATAAGGGAGTATTCGTACAAGGAGGTATCATAGATTCGGGATA-TCAAGGAACAATACAAGTAGTGATATATAATAGTAATAATAAAGAAGTAGTAATACCACAGGGAAGAAAATTTGCACAGTTGATCCTCATGCCTCTAATACATGAAGAGTTGGAGCCAT---GGGGAGAAACAAGAAAAACAGAAAGAGGGGAACAAGGATTTGGATCAACAGGGAT------------------GTATTGGATAGAAAATATTCCCCTAGCAGAA-GAAGAGCATAA-CAAATGGCATCAAGATGCTGTGTCCTTGCATTTAGAATTTGGGATTCCCAGGACAGCTGCAGAAGATATAGTTCAACAATGTGATGTGTGTCAA-----------GAAAATAAAATGCCTAGTACATTAAGAGGCAGTAATAAAAGGGGCATAGACCATTGGCAAGTAGACTATACCCACTATGAAGACAAGATAATATTGGTCTGGGTAGAAACAAATTCAGGACTAATCTATGCAGAGAGGGTAAAAGGAGAAACAGGACAAGAATTTAGGGTGCAAACTATGAAATGGTATGCGATGTTTGCCCCGAAATCATTGCAGTCTGATAACGGACCAGCATTTGTAGCAGAATCTACTCAGCTCTTAATGAAATATTTGGGCATAGAACATACTACAGGGATCCCCTGGAACCCACAATCTCAAGCATTAGTAGAGAGAACACATCAGACGTTAAAGAATACATTAGAAAAACTTATACCTATGTTTAACGCGTTTGAATCAGCCCTCGCAGGGACCCTCATTACTCTAAATATAAAAAGAAAGGGTGGGCTAGGGACAAGCCCTATGGATATATTTATATTTAATAAGGAACAACAAAGAATACAGCAACAAAGTAAATCAAAACAAGAAAAAATTCGATTTT----------------GTTATTACAGAACAAGAAAAAGAGGGCATCCAGGAGAGTGGCAAGGACCAACACAGGTACTTTGGGGCGGGGACGGTG-CGATTGTAGTGAAAGACAGAGGCACAGATAGATATCTGGTGATAGCTAACAAAGATGTTAAGTTCATACCGCCACCAAAAGAAATACAAAAAGAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Ovine_Lentivirus -----------------------------------------------------------------------------------------------------------------------------------------------------------TCCAACATCACAGCAGGGAAACAGCAGGAGGGGGCCACGTGTGGTGCCGTCCGCGCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTATGTTGTAACAGAAGCACCACCAAAGATAGATATAAAGGTAGGGACAAATTGGAAAAAGGTATTAGTAGATACTGGGGCAGATAGAACTATAGTAAGATATCATGACAATTC------------GGGAATACCCACAGGGAGAATAAAACTACAAGGGATAGGAGGAATAATAGAAGGAGAAAAATGGGATAAAGTAGTAATACAATA---------------TAAAGAAAAAAGAATAGAAGGGACAATAGTGGTACTGCCCAGTAGTCCAGTAG------AGGTATTAGGAAGGGATAATATGGCAAAATTAGACATAGGAATAA---TTATGGCAAATTTAGAAGAAAAGAAAATTCCCATTACACAGGTAAAATTAAAAGAAGGCTGTAAGGGTCCTCATATAGCACAAT-GGCCTTTAACTCAAGAAAAATTAGAAGGCTTAAAAGAAATAGTGGACAAGTTAGAAAAGGAAGGAAAGGTAGGTAGAGCGCCGCCACATTGGACATGTAATACTCCTATATTTTGCATCAAGAAAAAATCAGGGA---AATGGAGAATGTTAATAGATTTTAGGGAATTAAATAAGCAAACAGAAGATTTGGCGGAGGCACAATTAGGTTTGCCGCATCCAGGGGGATTACAGAAAAAGAAGCATGTAACAATACTTGACATAGGGGATGCATATTTTACAATACCATT---GTATGAGCCATATAGACCATATACATGTTTTACCATGTTAAGTCCAAATAATTTGGGACCATGTACACGGTATTATTGGAAAGTACTACCACAAGGATGGAAGTTGAGTCCCTCAGTGTATCAATTTACAATGCAAGAAATATTAAGGGATTGGATAGCGAAACATCCT---ATGATACAATTTGGAATATACATGGATGATATTTATATAGGGAGTGATTTGGATATAATGAAACACAGAGAGATAGTAGAAGAACTAGCTAGCTATATTGCCCAGTATGGATTTATGTTACCAGAAGAAAAGAGACAAGAAGGGTATCCAGCAAAGTGGCTTGGATTTGAATTGCACCCAGAGAAATGGAGATTTCAGAAACATACACTTCCAGAAATAAAGGAAGGGACCATAACATTAAATAAATTACAAAAATTAGTAGGAGATTTAGTCTGG---AGACAATCATTAATAGGAAAAAGCATACCTAATATACTAAAGTTAATGGAAGGGGATAGGGCGCTCCAAAGTGAAAGAAGGATAGAGCTCAGACATGTA---------------------------------------------------------------------------------------------------------------------------AAGGAATGGGAGGAATGTAGAAGAAAATTAGCAGAA---ATGGAAGGAAATTACTATGATGAAGAGAAGGATGTATATGGACAAATAGATTGG---GGAGATAAGGCAATAGAGTACATAGTGTTTCAAGAGAGAGGAAAACCTT---------------TATGGGTAAATGTAGTACATAATATTAAAAACCTCAGTCAATCACAGCAAATTATTAAAGCAGCACAAAAACTTACGCAAGAGGTAATAATAAGGATAGGAAAAATACC---ATGGATACTATTACCAGGAAAGGAGGAAGATTGGATCTTAGAGTTGCAAATAG---GAAATATAACATGGATGCC------CTCATTTTGGTCGTGTTATAGGGGGTCAATAAGGTGGAAAAAGAGAAATGTAATAACAGAAGTAGTA---------GAAGGCCCGACATATTATACAGATGGAGGT------AAGAAGAATGGAAAAGGAAGTCTAGGATTCATTGCCTCTACAGGCGTTAAATTTAGAAAACACGAAGAG---GGAACAAATCAACAATTAGAATTAAGAGCAATAGAAGAGGCGTGCAAACAG---GGACCAGAGAAAATGAATATAGTAACAGATAGCAGATATGCATATGAATTTATGAGAAGAAATTGGGATGAAGAAGTTATAAAGAACCCAATACAGGCTAGAATTATGAAATTAGTGCATGATAAGGAACAGATAGGGGTACATTGGGTACCTGGACACAAAGGAATTCCTCAAAATGAAGAAATAGATAAATATATTT---------------CAGAAATATTTTTAGCAAGAGAAGGAAGCGGAATTCTTCCAAAAAGAGCGGAAGATGCAGGGTATGATCTCATATGTCCGCAGGAAGTGTGTATTCCAGCGGGGCAAGTAAGAAAAATTCCAATTAATCTAAGAATAAACTTAAAGGAGGATCAGTGGGCCATGGTAGGGACGAAAAGTAGTTTTGCAAGCAAGGGAGTATTTGTACAAGGGGGAATAATAGATTCAGGATA-TCAAGGCATTATACAGGTAGTAGTATATAACAGCAATGACAAGGAAGTCATTATCCCACAAGGGAGAAAATTTGCACAATTAATTCTCATGCCTTTAATACATGAAGACCTAGAAGCTT---GGGGGGAAACTAGAAGGACAGAAAGAGGAAACCAAGGATTTGGATCAACGGGAGC------------------ATATTGGATTGAAAATATTCCCCTAGCAGAG-GAAGATCACAG-TAAATGGCATCAAGATGCTGGGTCATTACACTTAGACTTTGGGATACCCCGAACTGCAGCTGAGGATATTGTACAACAATGTGAAGTATGTCAA-----------GAAAATAAAATGCCCAGCACAATAAGGGGAAGCAATAGGAGAGGAATAGATCATTGGCAAGTAGACTATACACATTATGAGGACAAGATAATATTAGTATGGGTAGAAACAAATTCAGGATTAATATATGCAGAAAGAGTAAAAGGGGAAACAGGACAAGAATTTAGAATCATGACTATAAGGTGGTATGGTCTGTTTGCCCCAAAGTCATTGCAGTCTGACAATGGACCAGCATTTGTAGCAGAGCCAACACAGCTACTAATGAAATATTTGGGGATAACACACACAACAGGGATACCATGGAATCCCCAATCGCAAGCACTAGTAGAAAGAACTCATCAAACTCTAAAAAATACAATAGAAAAATTTGTTTCTATGTTTGCCTCATTTGATTCAGCAATAGCCGCAGCATTAATCACACTAAATATAAAAAGAAAGGGTGGGCTAGGGACAAGCCCTATGGATATATTCATATTTAATAAGGAACAGCAAAGAATACAACAGCAATCTACAAGAAATCAATCAAAATTTCGATTTT----------------GTTATTACAGAGTCAGGAAAAGAGGACACCCAGGCGAGTGGCTGGGACCAACACAGGTACTCTGGGAAGGGGAAGGAG-CAATCGTAATAAAAGATAAAAATCTAGAAAAGTATTTAGTCATAGCAAAAAAGGATGTTAAGTTCATACCGCAACCAAAAGAAATACAAACAGAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Prosimian_Immunodeficiency_Virus_Fat_Tailed_Dwarf_Lemur ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACGGGAGGAGGAGCCCATCAGGGGCCCCACTAGAGATGACAGCAGTGCAGCCCTCTGCACCAGAACCTCCCCCAGGGGGGGGGAGATGGGGTTG-----------------------------------------------------------------------------------------------------TACCCCACCCTCAAGGAATTATTAAATTAGATCACC{AG}GCCCCTGGTGACTCTGAAGGTAGGGG{AG}ACAATCGGTCACCCTCCTGATAGACACCGGGGCTGAC{AC}ATACAATTATCCACCCTAAAGA------TTGGAAACCAGTAGGAATGGAAGAGGGGATAATTAACATTGGGGGAATTGGAGGTTCTCAAAAGGGGGTATTATACAAACAAGTGCCTATTACTCT---------------AGCAGATAGGCAGATAC{AG}GGGAACTGTCATAAGGGCAG---TGACCC{CT}TATAA------ATTT{AG}CTAGGGAGGGACAATTTAGTATCACTAGGAATTGGAGTAGTGATGCTAATGGCACAGATGTCA{AG}T{AC}AAAATAGTGCCGCTGCCAGTTGAGTTAATGCCTGGCTGTGATGGGCCAAGAGTAAAACAGT-GGCCCCTTACGCAAGAGAAATATCAGGCTCTTGCTG{AG}{AG}ATAGTATCTAAATTAGAAAAAGAGGG{AG}AAAGTTAGT{AT}GAGCAGAGGTAGGTAATCCCTACAACACTCCGGTGTTTGCCATTAAGAAAAAATCAGGCA---AATGGAGAATGCTCATTGACTTTCGAGTGCTAAATGCTCGAACCAAAAAGGGGGCTGAACTTCA{AG}CTGGGCTTGCCCCACCCGGCAGGCCTACAAAAGAAAGATAATGTCACCATACTAGATATTGGTGATGCTTATTTTACCATACCATT---AGACCCCACATTTAAGAAGTACACTGCCTTTACTCTGATACCACCTAATAATCAGGGACCAGCCAGGAGATTTGTGTTTAATTGTCTACCACAAGGGTGGGTGTGTAGTCCAGCCTTTTACTAAAGGACTATGAGTGACATCATACAGCCATGGAAACAAGCTCATCCT---GAGGTCATGTTGTATGTCTACATGGATGACCTTCTAATCGGGACAGACCTCCCCTTGAGGGAGCATAGAAGGCTGGTCCAAGAGCTTAGGAGTATGCTTCTTGGCTGAGGCTTTGAAACTCCTGAAGAGAAAGTGCAGGACCAATGGCCACTACAGTGGATGGGGTATGAGTTACACCCTAATAAGTGGCAGTTGCAGGTCCGAAAATTAGAGTTACCAGA------TCACCCCACTTTAAATGAAGTCCAAAAACTGGTGGGAATTATTAATTGGGCTAGTCAAATTATATCAGGGCTTAAAATAAAGAAGCTTGCTGCTATGATGGCAGGGAATCAGGATCTCAATAGAAAGATAGAATGGACTAAGGAAGCCAGA---------------------------------------------------------------------------------------------------------------------------AAGGAAGCTGAAGAGGCAGCTAAGCTGCTCCAGGAGCTCCCAGCAAGGGGGTATGTCGACCCCTTGAAACAGGTGGAGGCTAGAATAGCTTTTGTAGGTTTCCGCGAGATAGCCTATGACGTCCATCAGGAGAATATCA------------TCCTTTGGTGTGGCAGA---GTAGGGTCCAGCAAAGCTCATTGTAATCCGGTGGACCTATGTGTAAAAGCAGCAATAAAAATAGGCAGGGAAACCTTGATTAGGCCAGGAGTGGTCCC---CATACTTACTGTCCCGGTAGCAAAAAATATCTGGGATAGTTTTGCATGGACTGCGGGGGAGGTAGCATGGTTCCC---AGAAGTAAGACATCAGGCACCTCCT-TAATAGTTGAGAAGTGGA---TGAAAATGGTGTCAGAACCCATT------AAGGGGGCAAGAACTTGGTATATCGATGGATCT---AAGAAA{CT}GGGGCCAAAAAGCTAGAGCAGGAATTTGGACAGAGGGAGAGAAGGCACAAGTACAGGAACTGGAG---AGCTCAAATCAAAAAGCAGAATTGGCAGCCTTGTTGTATGCCTTACAGCAG---GAAGACAAAGAATTAAACATTATCACTGATTCTCAATATGT------AATGAAAGTGATGCGACGCGAGCTATGGGTCAGCGATTCTCCCTTGGTTCAGAGCATCATACAAGCAGCAGAGAAAAAACAGGCTATCTATTTAGATTGGGTGCCAGGTCATAAGGGAATCCCAGGAAATCAGAAGATTGATGAAGAAATTC------------AAAATTGGCAAGGTTTGGTTATCCAAGGCACAGGTATCCTTCCTAAATGAGAAGAGGATGTAGGCTATGATTTACAAATTCCAGAAGATGTGTACCTGCAGGGCTTAGAAAGGCGGTCCATTCCATTGAACTTGCGAGTTCAATGGGAAAAAGACCAATGGGGGTTGATTGTGGCAAAGTCCTCTATGGCTCAGATGGGGGTGATTCCTCTAGGTGGAGTCATAGATTCTGGATA-TAGAGGACCCATCATCCTCATCCTATGGAATCTTAATAGGAATGCAGTACTCCTTAAGGCCGGAAAAAGAGTGGCTCAGCTAGTTATAATGTCTCTATTTCATGAGGAGTTGCAACAAGTTCAGCAGGTCAAAATTGACACGGCCCGAGGTGAAGGAGCATTTGGCTCCACTGGAGC------------------CTATTTCTTGGAGGCTATCCCTAGAGCAGAA-AGTGATCATGA-ACTATGGCACTCGGGGGTTAAAGCTCTCATGCAGGATTTTGGAATGCCTCGCATGGTGGCTAAAGCCATCGTGCAAAAATGTCCTGATTGCCAAGG---------GAAGGGATCAGCCATTACAGGGGTGGTGGATTACACCCCGGGGA--------CATGGCAGATGGATGTTACCCACTGGGAAGGACATAAACTGTTAGTAGCACTTGAGACTGCTTCTGGGTTAACATGGGCTAAAATTATCCCTGATGAAACAGCCAAAACCACTTTGTTGGCTACATTAGAACTGCACAGTATTTTCAAAGTGAGTCACTTACATACAGATAATGGGCCTAATTTCACTGCTGAAAGATTTACTAATGCTCTTGCCTGGTTAGGCATTAAGCACTCCACAGGTATCCCCTACAATCCTCAATCTCAAGGGGTAGTGGAATCTACCAATAAGTTGTTAAAAGAAATGCTCCACAACATTAGACCCAAAACGGAGACAGTTCA{CT}G{CT}GGCTGTCTATATGGCTTT{AG}TTTGCCATTAAT{CT}TTAAACAAAGGGGT{AG}GAGTGGGAGGTACAACTAGATATGAAAG{AG}CATTTAGACA{CT}GGGA{CT}TGGAAGAC{CT}TACAAAATTACCA{CT}TTCAAAAA----------------------------TTTGGACTCATACCATGTCTACTTTAAACAGCCACCTCAAAA{AG}ACCTGGCAGGGACC{AG}GCTCGTCTCCTTTATAAGGGGCAGGGAG-------CGGTGGTCTGCGAGCATCAGGGAAAGACAATAGCAGTACCTAGACGCTACTGCAAGATC{AG}TAACGGGAGTTTCTGATTCCCTCTCTGCAGATGGATAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Prosimian_Immunodeficiency_Virus_Gray_Mouse_Lemur ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCACCGGCCCCTAGTGACTCTGAAGGTAGGGAGACAATCGGTCACCCTCCTGATAGACACCGGGGCTGACAATACAATTATCCATCCTAAAGA------TTGGAAACCAGTAGGAATGGAAGAGGGGATAATTAACATAGGGGGAATTGGAGGTTCTCAAAAGGGGATATTATACAAACAAGTACCTATTAGTCT---------------AGCAGATAGGCAGATACGGAGAACTGTCATAAGGGCAG---TGACCCCTATAA------ATTTACTAGGGAGGGACAATTTAGTATCACTAGGAATTGGAGTAGTGATGCTAATGGCACAAATGTCAGTAAAAATAGTGCCGCTGCCAGTTGAGTTAATGCCTGGCTGTGATGGGCCAAGAGTAAAACAGT-GGCCCCTTACGCAAGAGAAATATCAGGCTCTTGCTGAAATAGTATCTAAATTAGAAAAAGAGGGAAAAGTCAGTATAGCAGAGGTAAGTAATCCCTACAACACTCCGGTGTTTGCCATTAAGAAAAAATCAGGCA---AATGGAGAATGCTCATTGACTTTCGAGTGCTAAATGCTCGAACCAAAAAGGGAGCTGAATTTCAACTGGGCTTGCCTCACCCCGCCGGCCTACAAAAAAAAGATAATGTCACCATACTAGATATTGGTGATGCTTATTTTACCATACCATC---GGACCCCACATTTAAAAAGTACACTGCCTTTACTCTAATACCACCTAATAATCAGGGACCAGCCAAGAGATTTGTGTTTAATTGTCTACCACAAGGGTGGGTGTGTAGTCCAGCCTTTTACCAAAGGACTATGAGTGACATCTTACAACTATGGAAACAAGCTCATCTT---GAGGTCATGTTATATGTCTACATGGATGACCTTCTAATCGGGACAGACCTCCCCTTGAGGGAGCATAGAAGGCTGGTCCAAGAGCTTAGGAGTATGCTTCTTGGCTGGAGCTTTGAAACTCCTGAAGAAAACGTGCAGGACCAGTGGCCGCTACAGTAGATGGGATATGAGTTACACCCTAATAATTGGCAGTTGCAGGTCCGAAAATTAGAGTTACCAGA------TCACCCCACTTTAAATGAAGTCCCAAAACTGGTGGGAATTATTAATTGGGCTAGTCAAATTATTTCAGGGCTTAAAATAAAGAAGCTTACTGCTATGATGGCAGGGAATCAGGATCTCAATAGAAAGATAGAATGGACTAAGGAAGCTAGA---------------------------------------------------------------------------------------------------------------------------AAGGAAGCTGAAGAGGCAGCTAAGCTGCTCTAGGAGCTCCCAGCAGGGGGGTATGTCGACCCCTTGAAACAGGTGGAGGCTAGAATAGCTTTTGTAGGTTTCCTCGAGGTAACCTACGACGTCCATCAGGAGAATATCA------------TCCTTTGGTGTGGCAGA---GTAGGGTCCAGCAAAGCTTATTGTAA-CCGGTGGATCTGTATGTAAAAGCAGCAATAAAAATAGGCAGGGAAACCTTGATTAGGCTAGGAGTGGTCCC---CATACTCACTGTCCCAGTAGCAAAAGATATCTGGGATAGTTTTGCATGGACTGCAGGGGAGGTAGCATGGTTCCC---AGAAGTAAGACATCAGGCACCTCCTCTAATAGTTGAGAGATGGA---TGAAAATGGTATCAGAACCCATT------AAGGGGGCAAGAACTTGGTATATCGATGGATCT---AAGAAACGGGCCCAAAAAGCTAGAGCAGGAATTTGGACAGAGGGAGAGAAGGCACAAGTACAGGAACTGGAG---GGCTCAAATCAAAAAGCAGAATTGGCAGCCTTATTGTATGCCTTACAGCAG---GAAGACCAAGAATTAAACATTATCACTGATTCTCAATATGT------AATGAAAGTGCTGCGACTCGTGCCATGGGTTAGCGATTCTCCCTTGGTGCAGAGCATCATACAAGCAGTAGAGAAAAAACAGGCTATCTATTTAGATTGGGTGCCAGGTCATAAGGGAATCCCAGGAAATCATAAAATTGATGAAGAAATTC------------AATATTGGCAAGGTTTGGTTATCCAAGGCACAGGTATCCTTCCTAAAAGAGAAGAGGATGTAGGCTATGATTTACAAATTCCAGAAGATGTGTACCTGCAGGGCTTGGAAAGGCGGTCCGTTCCGTTGAACTTGTGAGTTCAATGGGAAAAAGACCAATGGGGGTTGATTGTGGCAAAGTCCTCTATGGCTCAGATGGGGGTGATTCCTTTAGGTGGAGTCATAGATTCTGGGTA-TAGAGGACCCATCATCATCATCCTATGGAATCTTAATAGAAAGGCAGTACTCCTTAAAGCCGGAAAAAGAGTGGCTCAACTAGTTATAATGTCTCTACTTCATGAGGAGTTGCAACAAGTTCAGCAGGTCAAAATTGACACGGCCCGAGGTGAAGGAGCATTTGGTTCCACTGGAAC------------------CTATTTCTTGGAGGCCATCCCTAGAGCAGAA-AGTGATCATGA-ACTATGGCACTCGGGGGTTAAAGCTCTCATGCAGGATTTTGGAATATCTCAAATGGTGGCTAAAGCCATCGTGCATAAATGTCCTAATTGCCAAGG---------GAAAGGGTCTGCCATTACAGGGGTGGTGGATTACACCCCGGGGA--------CATGGCAGATGGATGTTACCCACTGGGAAGGACATAAACTGTTAGTAGCAGTTGAGACTGCTTCTGGGTTAACATGGGCTAAAACTATCCCTGATGAAACAGCCAAAACCACTTTGTTGGCTACATTAGAACTGCACAGTGTTTTCAAAGTGAGTCATTTACATACAGATAATGGGCTTAATTTCACTGCTGAAAGATTTACTAATGCTCTTGCCTGGTTAGGCATTAAGCACTCCACAGGCATCCCCTATAATTCTCACTCTCAAGGGGTAGTGGAATCTACCAATAAGTTGTTGAAAGAAATGCTCCACAAAATTAGACCCAAAATGGAGACAGTTCACGCGGCTGTCTATATGGCTTTATTTGTCATTAATTTTAAACAAAGGGGTGGAGTGGGAGGTACAACTAGATATGAAAGACATTTAGACATGGGATTGGAAGACTTACAAAATTACCATTTCAAAAA----------------------------TTTGGACTCGTACCATGTTTACTTTAAACAGCCACCTCAAAAAACCTGGCAGGGACCAGCTCGTCTCCTTTATAAGGGGCAGGGAG-------CAGTGGTCTGCGAGGATCAAGGAAAGACAATAGCAGTACCTAGACGCTACTGCAAGATCATAACAGGAGGGGAATAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Prosimian_Immunodeficiency_Virus_Mohol_Bushbaby ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGGAGAGAAGGCACAAGTACAGGAACTGGAG---GGCTCAAATCAAAAAGCAGAATTGGCAGCCTTATTGTATGCCTTACAGCAG---GAAGACCAAGAATTAAACATTATCACTGATTCTCAATATGT------AATGAAAGTGCTGCGACTCGTGCCATGGGTTAGCGATTCTCCCTTGGTGCAGAGCATCATACAAGCAGCAGAGAAAAAACAGGCTATCTATTTAGATTGGGTGCCAGGTCATAAGGGAATCCCAGGAAATCATAAAATTGATGAAGAAATTC------------AATATTGGCAAGGTTTGGTTATCCAAGGCACAGGTATCCTTCCTAAAAGAGAAGAGGATGTAGGCTATGATTTACAAATTCCAGAAGATGTGTACCTGCAGGGCTTGGAAAGGCGGTCCGTTCCGTTGAACTTGTGAGTTCAATGGGAAAAAGACCAATGGGGGTTGATTGTGGCAAAGTCCTCTATGGCTCAGATGGGGGTGATTCCTTTAGGTGGAGTCATAGATTCTGGGTATTGGAGGACCCATCATCATCATCCTATGGAATCTTAATATAAAGGCAGTACTCCTTAAAGCCGGAAAAAGAGTGGCTCAACTAGTTATAATGTCTCTACTTCATGAGGAGTTGCAACAAGTTCAGCAGGTCAAAATTGACACGGCCCGAGGTGAAGGAGCATTTGGTTCCACTGGAAC------------------CTATTTCTTGGAGGCCATCCCTAGAGCAGAA-AGTGATCATGA-ACTATGGCACTCGGGGGTTAAAGCTCTCATGCAGGATTTTGGAATATCTCAAATGGTGGCTAAAGCCATCGTGCATAAATGTCCTAATTGCCAAGG---------GAAAGGGTCTGCCATTACAGGGGTGGTGGATTACACCCCGGGGA--------CATGGCAGATGGATGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RELIK_Brown_Hare -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCCCTTGATTCCCCAAT-GGCCTTTAACCAAAGAAAAATTAGAAGGAATTCAGGAAATAACAAAAAGACTGCTCGAGGAAGGGAAGATATCTCCAGCAGACCCAGATAATCCCTGGAACACCCCAGTATTTGTGATAAGGAAAAAATTAGGTA---AATGGTAAATGTTAATAGATTTTAGAGAACTTAATAAGTTAGTAGATAAGGGAAGAGAAGTTCAGTTAGGTATTCCACACCCTGGAGGATTACAAAGAAGAAACCAGGTCACTGTTTTGGATATAGGGGATGCTTAATTTCACCACCCCCTCTGGATAAAGGACTTCAGGCCGTACACTGCCTTTACCATCCCAGAAGTTAATAATCAAGTTCCAGGCCATAGGTATGTTTGGAATTGCCTCCTACAAGCTTTTGTATTAAGTCCCTTGATTTACCAAAGTACACTAAGGGTATTACTAAGCCCTTGGAAACACCAACTCCCA---GAGGTAGATCTTTATCAATATATGGATGATATATATATTGGGTCCAATCATTCTCCAAAATATCCCAAACTGATCGTAGAAAAACTCAGAAAAATGCTTT---AAAAGGGATTTGAGACTCCGAATGAGAAATTACAAGAACAATATCCTTATTCATGGATGGGGTACTTGTTGCACCCGAATAAATGGACATTGCAAAAACTAGAGTTGTCAGAACTTCC---AGAGAAGCTCACCCTAAATGAACTACAAAAGTTAGTTGGACTCCTTAATTGGATGACCCAAGCTGTTCCCGGAATTAAGACAAAACCTTTTACTCTTATGATGAAGGGAAACCAAGAGTTAAATAGTATAAGGGAGTGGACCCCCGAAGCAAGA---------------------------------------------------------------------------------------------------------------------------CAGGAGTTATGGATTATAAAGAGGCTATTACAAGAACACAAACCTTTAAACTACTGGGACCCCAGCAAGGAAGTTTACTGTACCGT---TATGATGGGAGGTAACACCATAAATTATAAAGAGCACCAAGGATCTGATA------------TCCTTTGGGTAGGTAGACAGGAATTTCCAAAGGTATTGGCAGCATCTCCTCTAACTAGAGCCCTAAAATGTCTACATAAAATCAGACAAGAATGTATTATATGAATAGGGCAAGAACC---TATATATAGGTTACCTATAAAAAAAGAGGATTTAGACGTTATGATTCAGGAAGACCCCTACTTGCATTGGGTACC---ACAGATTGAATGTATCCATGCACCTTTAATGCTTAGAAGAGCGCTAAGCAGTCTTCAAGGTCATCCCGTG---------CCAGGACCTACTTACTATGTTGATGGAGGA------AGCAAACAGGGGCAAGGAAAATATGGCTTTTGGAGATCAGATGGAGTTAAATTAATTAAGGAGGGTGAG---GGAGTTAATCAAGAATTCGTAAAAAGAGCCATGCTACTAGCCCTTCAAGAA---GGACTCCTGATAATGAATATAGTTACAGATTCCCAATATGTATATACATTAACTGAGGCCAGACCCCTACCTGTAAATATTGAAGAACCCTTGCTTAGAACCATACTAGAAGCTATAGAAAGTAAAGAAGAAATTTACACCCAATGGGTGCCTGGACATAAGGGAATCCCAGGCAATGAAAATATTGACAAATTAGTTT--CAAATAAATACAACTCAAATAAACCTGGTAGTACAAGGTGGTCACATTAAGGAAAAAGAACCAGAACAGATTGGATACTCCATAAGTGCCCCAAAAGATCTAGTACTTATGCCAAAGGTAATAGAGACCCTTAACCTACAAACACAAATTATCATAATCCCAGGACAGTGGGGTTGGATAACAGAAACATCAGAGATGACTGAGGCCAAAGTAAGGGTAGTTGGAGGTTTCATCAGCCCAGGAGA-CCAAAATCCTCTAAAAATAAGATTGGTCAACCTATCCCAAAAAATAGTATATGTAAAAACAGGACAACTAATAGTTCAGTTAATTTTAATGTCTGTCCTCCATGAC---------------------------------------------------ATAAGTAAGGCACCAAACAT------------------CTTTTTTCTAGAACATATTGAGACAGCCACG-GACGATCATGC-TAAATGGCATAGTGACGTGTCATACTTGAGACAACAATGCAGCTCACCAAAAATTGTAGCAGAACAAATAATAAAGAACTGCCCCAAGTGTGTGCA---------TAAAGGAGGAACTACTCCTCATATTAGTAGATCAGGGCCAGGAC--------TGTGGCAAATGGATGTGACCCACTATGAGGCCCGGCTAATTCTGGTAGCCATTGAGACATCTACTGGCCTTCTATGGGCTAAGCTAATTCCTAAGGAAATTGCTCAGGAAACAGTATGGGGAATGTTAGAACTACAGAACCTATTTCATATCCAAGCACTCCATACAGATAATGGCCCTAACTTCACAGCAGAAAGGGTCACAGGATTGTGCTGATATTTAAATATTGATCATACCACAGGCACACCCTATAATCCACAGTCACAGGGAATGGTTGAGAGAGCTAATCAATCCTTAAAACAAGAAATGAATAAATTTGCTGATGTGGTTCAAACCATTGAAGCACGGCTATAATTGGCTCTTATCGCCCTTAATCAAAAGAAAAGGGGAGCAAT-GGGGGCTATACACCTACTGAAAGATATATCCATCAGAGATGGCAAGAACTAGAGCAAATGCTCCAACTCCA-----GAAATTTAAAGATAAAAAACTCTTTT-----GCTTTTATAGATTACCAAACAGTAAAGAC---------TGGAAAGGGCCCACTACAATCCTTTGAAAAGGAGAAGGAT----CAGTAGTGATTGACACACCTGAAAAGGGGATTATTAGCTTGCCTCAAAGACATGTTATGATGGTTCCAGCCCCAGGACCTCAAGACTTGGGAATTTCCATTTAGGAACTAATGGAATATCAATTGCAATTATCCTGTCAAAAGAACTCATGTGTTTGTAAGGTGCTTTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RELIK_European_Rabbit --------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGAAAGCGGGGGGCAATGCCCCCCGGACCATGATGGCGTCTGCCCAGAATATCCAGTCATCTATCCCACCATCTGCCCCACCCCTGGGGGAAACACAGACGGAAGCCCCTGCGACAGGGATCTACCCGAAACTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAATAGAATTAAAACAAAGACCTACCTTAAAGGTAAACCTAGGGGGGAAAGATATAATAGGGCTGTTAGACACAGGGGCTGATTTAACTATAATAAGGGAACAAGAGGCTAAAGGAATAAAAGAAGGGATAACAGAAGGATGGCAAAATATAGAGGGGGTGGGAGGGTGCTCTAAATTACAAAAAATATCACAGGTTACACTGAAAGA------------CAAAAAAGGAAGGAAGACAAAGACATCCATTCTAATATCCCCAGATATTCCCATCA------ATATATTTGGAAGGGATATCTTAACAAAGTTAGGGGTAGCCCTAA---TTATGGCACAACT---CTCTACCCAAATTACCCCAATAAAGATAAAAATGAAAGATCCTAATAAAGGTCCCTTGATTCCCCAAT-GGCCTTTAACCAAAGAAAAATTAGAAGGAATTAAGGAAATAACAAAAAGACTACTAGAGGAAGGGAAGATATCTCCAGCAGACCCAGATAATCCCTGGAACACCCCAATATTTGTGATAAGGAAAAAATCAGGTA---AATGGCGAATGTTAATAGATTTTAGAGAACTTAATAAATTAGTAGATAAGGGAAGAGAAGTTCAGTTAGGTATTCCACACCCTGGAGGATTACAAAGAAGAAACCAGGTTACTGTTTTGGATATAGGGGATGCTTATTTTACCATCCCTCT---GGATAAGGACTTCAGGCAGTACACTGCCTTTACCATCCCAGAGGTTAATAATCAAGGTCCAGGCCATAGGTATGTTTGGAATTGCCTCCCACAAGGTTTTGTATTAAGTCCCTTGATTTACCAAAGTACACTAAGGGACATACTAGAGCCCTGGAGACAACAACACCCA---GAAGTAGATCTTTATCAATATATGGATGATATATATATTGGGTCCGATCATTCTCCAAAACAACACAAACTGATCATAGAAAAACTCAGAAAAATGCTTTTAGAAAAGGGATTCGAGACCCCAAATGAGAAATTACAAGAACAATATCCCTATTCATGGATGGGGTACTTGTTGCACCCAAATAAATGGACATTGCAAAAACTAGAGTTGCCAGAACTTCC---AGAGAAGCCCACCCTAAACGAACTACAAAAGTTAGTAGGACTCCTTAATTGGATGACCCAAGCTGTTCCTGGAATTAAGACAAAACCTTTTACTCTTATGATGAAGGGAAACCAAGAGTTAAATAGTATCAGGGAATGGACCCCCGAAGCAAGA---------------------------------------------------------------------------------------------------------------------------CAGGAGTTACGGACTATAAGGAGGCTATTACAAGAACACAAACCTTTAAGCTACTGGGACCCCAGCAAGGAAGTTTACTGTACAGT---TATGATGGGAGGTAACACCATAAATTATAAAGTGCACCAAGGATCTGATA------------TCCTTTGGGTAGGTAGACAGGAATTTCCAAAGGTATTAGCAGCATCTCCTCTAACTAGAGCCCTAAAATGTCTACATAAAATCAGACAAGAATGTATTATACGAATAGGGCAAGAACC---TATATATAGGTTACCTATAAAAAAAGAGGATTTAGATGTTATGATTCAGGAAGACCCCTACTTGCATTGGGTACC---ACAGATTGAATGTATCCATGTGCCTTTAATGCTTAGAAGAGCACTAAGCAGTCTTCAAGGTCATCCCGTG---------CCAGGACCTACTTACTATGTTGATGGAGGA------AGCAAACAGGGGCAAGGAAAATATGGCTTTTGGAGATCAGATGGAGTTAAACTAGTTAAGGAGAGTGAG---GGAAGTAATCAAGAATTAGAAAAAAGAGCCATGCTACTAGCCCTTCAAGAA---GGACCCCCGATAATGAATATAGTTACGGATTCCCAATATGTATATACATTAATTGAGGCCAGACCCCTACCTGTAAATATTGAAGAACCCTTGCTTAGAACCATACTAGAAGCTATAGAAAGTAAAGAAGAAATTTACATCCAATGGGTGCCTGGACATAAGGGAATCCCAGGCAATGAAAATATTGACAAATTAGTTTCACAAATAAATACAACTCAAATAAACCTGGTAGTACAAGGTGGTCACATTAAGGAAAAAGAACCAGAACAGATTGGATACTCCATAAGTGCCCCAAAAGATCTGGTACTTATGCCAAAGGTAATAGAGACCCTTAACCTACAAACACAAATTACCATAATCCCAGGACAGTGGGGGTGGATAACAGAAACATCAGAGATGACTGAGGCCAAAGTAAGGGTAGTTGGAGGTTTCATCAGCCCAGGAGA-TCAAAATCCTTTAAAGATAAGATTGGTCAACCTATCCCAAAAAATAGTATATGTAAAAACAGGACAACTAATAGCTCAGTTAATTTTAATGCCTGTCCTCCATGAC---------------------------------------------------ATAAGTAAGGCACCAAACAT------------------CTTTTTTCTAGAACATATTGAGACAGCCACG-GATGATCATGC-TAAATGGCATAGTGATGTGTCATACTTGAGACAACAATTCAGCTTACCAAAAATTGTAGCAGAACAAATAATAAAGAACTGCCCCAAGTGTGTGCA---------TAAAGGAGGAACTACTCCTCATATTAGTAGATCAGGGCCAGGAC--------TGTGGCAAATGGATGTGACCCACTATGAGGCCCGGCTAATTCTGGTAGCCATTGAGACATCTACTGGCCTTCTATGGGCTAAGCTAATTCCTAAGGAAACTGCTCAGGAAACAGTATGGGGAATATTAGAACTACAGAACCTATTTCATATCCAAGCACTCCATACAGATAATGGCCCTAACTTCACAGCAGAAAGGGTCACGGGACTGTGCCAATATTTAAATATTGATCATACCACAGGCACACCCTATAATCCACAGTCGCAGGGAATGGTTGAGAGAGCTAATCAATCCTTAAAACAAGAAATGGATAAATTTGCTGATGTAGTTCAAACCATTGAAGCACGGCTACAATTGGCTCTTATCGCCCTTAATCAAAAGAAAAGGGGAGGAATAGGGGGCTATACTCCTACTGAAAGATATATCCATCAGAGATGGCAAGAACTAGAGCAAACGCTCCAACTCCA-----GAAATTTAAAGACAAAAAACTCTTTT-----GCTTTTATAGATTACCAAACAGTAAAGAC---------TGGAAAGGGCCCACTACCATCCTTTGGAAAGGAGAAGGAG----CAGTAGTGATCGACACACCTGAAAAGGGGATTATTAGCTTGCCCCAAAGACATGTTAGGATGGTTCCAGCCCCAGGACCTCAGGATTTGGGAATTTCCAATTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Simian_Immunodeficiency_Virus__African_Green_Monkey_Grivet --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGTTTGGC---CCCTGGGGCAG---------AGGGAAACCCAGGAATTTCCCTCTGACC------------------TCCATCAGACCAACAGCTCCCCCAATGGAAC------GGGATTACAGCAGGCCGGAGGAAAATTGGTATGCAGACAGACCTCCGACCAGAGGACCAGGGCCAGACGATCCAGCAACAGCCCTGTTAAAGCA-------------------------GTATGCTGTTCAGGGGAAACG-----GCAGAA------ACAGCAGTGGCAAAACCACTCGCCACAACAGAGCCCCTACGAG------------------------------------GAGGCTTACAGCTCCCTCAGGTCTCTCTTTGGAGAAGACCAATGAAAACTGTGTACATAGAGGGACAGAAAGTCACTGCTCTATTAGACACAGGAGCAGATGACTCAGTAATACAGGG------------TATAGAATT---AGGAGACAATTGGAAACCAAGAATAATTGGAGGAATAGGAGGATGTATTAATGTAAAAGCATACCACAATCAGGAGGTAAAAAT---------------AGAAGATAAAACTTGTAAAGCTACCATTTTGGTAGGAG---AAACACCAGTTA------ATATTATAGGAAGAAATGTCTTAGCACAATTAGGAGTTACTCTAA---ATTTGAC---------ACAAAGAGAGATAGAACCTATAAAAGTCCACTTAAAGCCAGGACAAGATGGGCCAAGGATAAGGCAAT-GGCCTTTGTCAAAAGAAAAAATAGAGGCCTTAAAGGCCATTTGTGAAGACTTAGAAAAACAAGGACATTTGGAAAGAATAGGGCCAGAAAATCCATATAACACCCCAGTCTTTGCAATAAGGAAGAAAGATAAAACTCAGTGGAGAATACTCATGGACTTCAGGCAGTTAAATAAAAGTACTCAAGACTTTCAGGAAGTCCAGTTAGGGATACCCCACCCAGCAGGCTTACAGCAAAGGGAGCAGATTACAGTGTTGGACATAGGAGATGCCTATTTTAGCTGCCCTTT---AGATCCAGACTTTCAGAAATATACAGCATTCACCATCCCATCAGTCAATAATAGGGAGCCAGGCATAAGATATCAGTATAAGGTGCTCCCACAGGGGTGGAAAGGCTCACCCACAATTTTTCAGACAACAGCCAACAAAATTCTGCAGGAATTTAGGCAAAAGAACCCA---GATGTAGATATATATCAATACATGGATGATATGTTAATAGCCAGTGATAGGCCAAAGGCAGAACATCTAGTAATGGTACAGCAGTTAAGAGACTATCTAGAAACTTGGGGGTTTAAAACCCCTGAAAAGAAGTTTCAAAAGGATCCACCATACCTCTGGATGGGGTATGAATTGTATCCAAAGAAATGGCAACTGCAGGAGATCACCCTACCAGAAAGGGA------AGAATGGACAGTGAATGATATTCAAAAATTAGTAGGAAAGTTAAATTGGGCAAGTCAAATTTACACAGGGATAAAGACTAAACATTTGTGTAGACTAATTAGAGGAGCTAGACCTTTGACAGAGATAGTCCAATGGACAGAAGAGGCAGAA---------------------------------------------------------------------------------------------------------------------------CTAGAATTAGAAGAAAATAGACAGATCTTAAGACAAAAGCAGCAGGGACAATATTATGACCCTGCTCTTCCTTTAAGGGCTAAGGTTCTTAAACTGGGAGATGGCCAATGGGGATATCAGATATACCAGCCAGAAAATAA---AA------TACTGAAGGTTGGCAAATATGCAAAAATCAAAACAGCACACACCAATGAATTAAGAATGTTAGCAGGCCTAGTACAGAAGATAGGAAAGGAAAGCATAGTCATCTGGGGACAGATACC---TATTATGGAACTGCCAGTAGAAAGAGAGCTCTGGGAACAATGGTGGTCTGACTATTGGCAGGTCACCTGGATCCC---GGAATGGGAAATGGTCAGTACTCCTCAATTGATTAGATTGTGGT---ACAAATTAGTAAAAGATCCCATC------CCAGGAGAAGCAGTCTATTATGTAGATGGGGCAGCTAATAGAAATTCCAAAGAAGGAAAAGCAGGATACTTAACAGATAGAGGGGATCAAAAGGTGGTAGCATTAGAGAATACTACCAACCAGAAAGCAGAGTTAGAGGCCATTCTGTTAGCCTTAAGAGAC---TCTGGAAGCAAAGTAAATATAATAACAGACTCACAATATGC------TATGGGTATTATAGCAGGGGAACCTACAGAATCAGATAATAACATAGTACAACAAATTATAGAGGAACTAATAAAGAAGGAGGCAGTGTATATAGCATGGGTACCTGCCCATAAAGGAGTAGGTGGCAATGAGGAAATTGATAAACTAGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAA-GGAATAAG------ACAAGT------------------ACTATTCCTGGACAGAATTGAAGAAGCACAA-GAAGAGCATGA-TAAATACCATGCCAATTGGAGGAGTATGCAACAAGAATTTGGCTTACCTGCTATAGTAGCAAAAGAAATAGTAGCGGCATGTCCTAAATGCCAGAT---------AAAAGGGGAGTCTGTACATGGGCAAGTAGATGCTAGTCCAGGAG--------TGTGGCAAATGGATTGTACACACCTAGAAGGAAAAATCATCATAGTGGCTGTTCATGTTGCTAGTGGATTTATAGAAGCAGAAGTAATCCCACAGGAAACAGGAAAAGCTACAGCACACTTCCTGCTGAAGTTAGCCAGCAGATGGCCCATCACACAGCTGCATACAGATAATGGTACCAACTTTACTAGCCAGCAAGTAGCAGCTATTTGCTGGTGGGGAAAAATAGAGCACACATTTGGGGTACCCTACAACCCCCAAAGTCAGGGAGTAGTAGAATCTATGAATAAGCAGTTAAAAGAAATCATAGGACAAATTAGAGATGATGCAGAAAGATTGGAAACAGCAGTCATAATGGCAGTGCACATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACTCTGCAGCAGAAAGACTAATCAATATAATACATACAGAACTAGAAACCAAAACACTTCAACA---AAAAATTTCAAAAATTCAAAA----TTTTCGGGTCTATTACAGGGAAGGCAGAGACCCTGTG---------TGGAAAGGTCCGGCTAAGCTCATCTGGAAAGGAGAAGGAG----CAGTAGTTATACAA---GAACAGGGTGAATTGAAAACAATCCCAAGAAGAAAAGCCAAAATTATAAAAGATTATG---GAAA------------------------AGCATTGGATAGTCAGGCCCCTCTGGAAGGTAACGGGCGGACAGCAGGAGAGGTGG-----ACTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Simian_Immunodeficiency_Virus__Greater_Spot_Nosed_Monkey --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGA------CCTTGGCCGGGGGCG---------ACGAGCCCCCAGGAACTTTCCAGTAACT------------------TCCCTGCTGCCATCAGCCCCGGCGGAGGAGGTGGAACCCCAGCAGCTCAACCT-------------------------------------------------------------------------------------------------------GTCTCCGCCGGTGGGGGAGCC-----CCAGAACAAGGAGCAGAAGGCAGAAAAGAGGAAC---------------------------------------------------------ACTCTTTATCCCTCCCTGTCATCTCTCTTTGGGGAAGACCAATGAGAGAAGTCTCCATGGGGGGACAAGTGGTGTCCATGTTATTAGACACAGGGGCGGACGATACCATTGTCCAAGAATCAGC------AATTGAATT---AGACACACCATGGACACCAAAAACGGTAGGGGGGATAGGGGGTTTAATACAAGTAAAGGAACATAGACATGTAGAAGTGATCTT---------------TAATGAAAAAAGAATCAAAGCCACTGTACTTGTAGGGC---CCACACCAGTGA------ATATATTGGGAAGAAATTGTTTAAGCAAGTTAGGAGTAACCTTAA---ACATGGT---------GCAGCAGAAACTAGAGCCCGTAGAAGTGCACCTAAAATCAGGAAAAGAAGGACCAAAGATTAAACAAT-GGCCCTTGTCTAAGGAAAAGATAGAGGCCTTAACCCAAATAACACAAGAAATGCTCAAGTTAGGCCAATTGGAAAAGATAGGGCCAGAAAATCCATACAACTCGCCAGTCTTTGCCATAAAAAAGAAAGACAAATCACAATGGAGAATGTTAATAGATTTCAGGAAATTGAATGAGGCTACGCAAGACTTGGCTGAGGTCCAGTTGGGGATTCCGCACCCAGCAGGACTAGAACAAAAAGAGCACGTAACTATAATAGATATGAAAGACGCTTATTACAGTGTACCATT---GTATGAAGAATTCAGAAAGTACACTGCATTTTCAGTACCATCAGTAAACAATCAGACCCCAGCTGAGAGGTATCAGTTCAAAGTTTTACCTCAGGGTTGGAAGGCGTCTCCAACCATTTTTCAGGCCACTGTAGCTTCCTTGTTATATCAGATTAGAGACCAGGAGCCA---GATGTGGTAATAATACAGTACATGGATGACTTGTTGATAGGATCAGATAGGAAATTGGCAGAGCATAGGCAAGTAGTGCACAAAATAAGAAATTTGTTGACGTCCTATAACATCCAGACCCCCGAGGCCAAACACCAACAAGATTATCCAGTCAGATGGCTCGGGTATGAGTTGCACCCTAAGGGATGGAGGCTCCAACCAGTGGAGCTCCCAGATCAAGA------CATCTGGACAGTAAATGACATCCAAAAATTGGTAGGGAAGCTCAATTGGGTATCGCAAATACATCCTGGCATAAGGACAAAACAGTTATGCAGATGTATTAGAGGAGCCAAAGGGCTAACAGAACAGGTGGAGCTCACTGAGGAAGCACAA---------------------------------------------------------------------------------------------------------------------------ATAGAGTTAGCAGAAAACAGAGAGATTCTAAAACAATCCTCAGAGGGCAGCTACTACGACGCAGAAAAGCCACTTGTGGTAGAAATTACCTCCCTAGGAGAACAGCAATGGGGATACATGTTCAGTCAGGACAGCAAGA------------TGCTAAGATCAGGCAAATTTGCAAAAACCAGAACTGCACATATAAACTCTTATCAGCAATTGGCAGATGCTATGACCAAAGTAGGTAGGGAAAGTCAGGTTACTTGGGGAAAAGTACCTGACAAATTCAGGATCCCAGTAGTCAAGGAGCAATGGGATACGTGGTGGATGAACTATTGGCAGGCAACATGGATTCC---CACCATAGAAGCAGTACACACACCACATTTGTTGAGACAGTGGT---ACACCCTAGTCTCGGAACCCCTA------GAAAATGCAGTCACCTATTATGTAGACGGGGCAGCAAATAGGACCTCTAAATTAGGAAAAGCTGGCTATGTGACCAATACAGGAAAATATAGAGCCATAGAACTAGAAGGAACTACAAATCAACAAGCAGAACTCCAGGCAGTTCTTTTGGCATTAAAAGAA---GGACCACCAAGAATGAACTTGGTCACAGATTCCCAATACGT------AATGGGGATCTTACAAAGCCAACCAGAAGTATCCACCTCTCCCTTAGTGGAACAAATCATACAAGAACTGTTAGGGAAAGAGGCCGTCTACTTGAGTTGGGTTCCAGCACACAAAGGGATAGGAGGAAACACAGAGGTAGACAAATTAGTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGA-GGGATCCG------CCAAGT------------------ACTCTTCATGGAGAACATAGAGCCCGCAGTA-GAGGACCATGA-AAAATATCATAGTAATTGGAAGTATTTAAGGGATCAATACAAAATCCCGGCACTATTGGCTAAAGAAATAGTAAACAAGTGCTCCAAATGTCAGAT---------ACATGGGGAACCAAAACATGGGCAAGTAAATGCAGAATTAGGCA--------TATGGCAAATGGACTGCACACATCTGGAAGGCAAAGTTATCTTAGTGGCAGTCCACGTAGCCAGTGGGTATGTTTGGGCTAGGATAATACCCCAAGAAACAGGCAGACAAACTGCATTAAAGCTATTAGAATTAGCAGCAACATGGCCAGTAACTCACCTACATACAGATAATGGCCCCAATTTCATCTCTAAGGAACTGGAGGCAGCTTGTTGGTGGGCAAACATACAACACAGTACAGGGGTGCCATACAACCCGCAAAGTCAAGGGGTAGTAGAAAACATGAACAAACAACTCAAGGAAACAATCCAAAAGATTAGAGATGAGGTCACATACTTAGAAACAGCAGTAGCACAAGCATGCTACATTCATAATTTTAAAAGAAAGGGAGGAATAGGGGATATGTGCCCTACAGAGAGGTTAGTGAACATGATCCACACAGAATTAGAAACACAACACTTAAACAC---ACAAAGTTCCAAATTTCAAAA----ATTTCGGGTTTATTACAGGCAAGGAGCTAATCCTCAT---------TGGCAAGGACCAGCAGTACTTCTCTGGAAGGGTGAAGGAG----CAGTAGTGGTCCAAACCCAAGCAGGTGAGATCATCACAGTCCCTAGAAGGAAAGCAAAGATCATCAAGCCATATGGAGAGGCAAAGGCAGA---------------AGATGTGGGTAGTGCAGCCCATACAAGTAATGACAGAGAGGAAGGTAGAATGGCTGATTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Simian_Immunodeficiency_Virus_African_Green_Monkey_Tantalus GGCAGAGGCAGAGGCCCACCCCGCTGCTTCAAATGTGGACAAATTGGGCATATACAAAAAGATTGTCCAAGAGCAGGACCAAACAAATGCCTAAAATGTGGGAAGCCAGGACACTTAGCAAAAGATTGCCGCAGTGGACAGGCCAATTTTTTAGGGAGAATGCCAACCTGGGG------------AACAAAGCCGCGCAATTTTTTAGAGCAA---------------GGCGGAGCCGTTCCGACGGCTCCCCCGATGCCTG---------------------------------CGCACGGATTCCCCACAGGTTCGCCAGCTGCGGGAGCATACGACCCAGCCAGGAAACTGCTGGAGCA---------------------------GTATGCCAAAAAGGGAGATCAATTGAGAAAGCAGAAGGAGAAGGAACTGGAGGACTA---------------------------------------------------------------------TTCCTTGAGTTCCCTCTTTGGAGGAGACCAATGAGTAAGATCTACATACAGGGCCAGCCAGTACAAGTTCTGTTAGATACAGGAGCTGATGATACCATAATAAAGGAAGAAGA------TATCCATTT---AGAAGGACGCTGGCGGCCTAAAGTAGTAGGAGGTATAGGAGGGGGAATCTCAGTAAAACAATATGACAATATTTTAGTGAATAT---------------AGATGGAAAAGAAACTAGAGGTAATGTACTAATTGGAC---CAACACCAATAA------ATATTGTAGGAAGAAATATTCTAGCACCTTTAGGAGCAAGATTAA---TAATGGGACAGCT---AAATGAGAAAATACCCATAACCAAGGTACAATTGAAACCTGGGATGTCAGGACCGAAATTAAAACAAT-GGCCCCTATCAGAAGAAAAAATAAAAGCCCTGACAGAAATAACTCAGGCTCTAGAAAAGGAAGGAAAAATTTCTAAGGTTGGAGGAGAGAATCCTTACAATACTCCCGTGTTTTGTATCCGGAAAAAAGACAAAACACAGTGGAGGATGTTAATAGATTTTAGAGCTCTCAATAAAGCAACACAGGACTTCTTTGAGGTACAATTAGGTATTCCCCATCCAGCAGGATTGAAAAGAAAGAAACAGATCACAGTACTAGATATAGGAGATGCCTATTATAGTATACCATT---GGATCCAGAATTCAGGCCCTATACAGCTTTTACCATCCCACAAGTAAATAATGTAGGGCCTGGAATTAGGTATCAATTCAATTGTCTACCTCAAGGATGGAAAGGATCACCCACCATATTTCAGCACACAGCACAGCGAGTCCTAAAAGAAATAGGAAAAAAGGTTCAA---GATTTAGAAATAATTCAGTACATGGATGACATGTGGATAGGATCAGATTTGCCAGAGAAAGAACATGATGAAAAGGTAGAAGAGGTAAGAAAGCTTCTGCTATTAAGAGGCTTCGAGACGCCAGATAAGAAGGTGCAGAAAAGACCTCCATATGATTGGATGGGATACAAGTTGTACCCTTCTCACTGGAGTCTCAACAAAATAGAGATACCAGAGCAAGA------ACACTGGACAGTGAATGATATTCAAAAATTAGTAGGAGTGTTAAATTGGGCTAGTCAATTATATCCAGGAATTAAGACAAAAGCCCTATGCAAATTACTACGAGGAGCTCAAGATTTAACAGCTGTAGTGCAATGGACGGAGCAGGCAGAG---------------------------------------------------------------------------------------------------------------------------GTAGAGTTCAGACAAAATCAAGAGATCTTAAAAGAAGAGCAACAGGGAGCTTACTATGACCCAAGTAAATCTTTGAGAGCCACTATTACCAAGCTGGATGATGGGCAATGGGGATATCAATTCAAACAGGAGGGAAAAG------------TACTAAAAACAGGAAAATATACAAAGAGCAAAAATACTCATACAAATGAGTTTAGAGTATTGGCAGGAATGGTCCAAAGGGTGTGCAAGGAAGCGATCACCTTTTGGGGAAAATTACC---CATCATGGAAGTACCAGTAGAAAGAGAAGTATGGGAACAATGGTGGAGTGACTATTGGCAAGTCACATGGCTACC---AGAGATAGAATTCATCTCCACACCGCCCTTAATCAAATTATGGT---ATAACTTGGTAAAAGATCCCATA------CCAAAAGCAAAGGTGTATTATTGCGATGGGGCATGCAATAGAAATTCCAAATTAGGAAAGGCAGGCTTCCTAACTAACACAGGAGAATCACAGGTCATAGAATTAGAGGATACCACGAACCAACAAGCAGAATTACAAGCAGTCCTTCTAGCATTAAAACAT---AGTAAGAGCAAAGTTAATATAGTAACGGATTCACAGTATGT------CATGGGAATCCTGACAGCACAACCTACACAAAGTGACTCCGTGCTAGTAAATCAAATAATTGAAGAAATGATTAATAAAGATGCTATCTATTTAACCTGGGTACCAGCACATAAAGGGATAGGGGGAAATCAAGAAATAGATAAGCTAGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAG-GGGATTAG------GCAAGT------------------GCTATTCTTAGACAGAATGGAAGAAGCCCAG-GAATCACATGA-TAAATATCATACTAATTGGCAATTTATAAGAGATGCATTCGGTATACCAGCACTGGTAGCAAAAGAAATAGTAGCTGCTTGCCCAAAATGTCAAAT---------TCGAGGAGAACCGATACATGGGCAAGTAGATGCCAGTGTAGGGG--------TCTGGCAAATGGACTGTACACATTTGGAAGGAAAAATCATTATAGTAGCAGTCCATGTGGCCAGTGGCTTCTTAGAAGCAGAAGTCATAGCTAGGGAAACAGGAAAAGAAACAGCAAAATTCCTGTTAAAAATCATTAGTAGGTGGCCTATTACAAAATTACATACTGACAATGGGCCAAATTTTGTTAGTCAGGAGGTACAAACTATTTGTTGGTGGGGACAAGTAGAGCACACAACAGGGATCCCCTATAACCCACAATCACAAGGAAGTGTAGAAAGTATGAATAGACAATTAAAAGAAACTATAGAAAAAATTAGAGAAGACTGTGCATTTTTGGAAACGGCAGTCCTCATGGCCTGCCACATTCACAATTTTAAAAGAAAGGGAGGAATAGGGGGTATGACCCCAGCAGAGAGGCTAATAAACATGATAACCACACAACTAGAAATACAACACATACAAAC---ACAACAACAAAAAATTTCAAA----TTTTAAGGTCTACTACAGAGAAGGAAGAGAGCCAGTG---------TGGAAAGGACCAGCCACTCTCCTCTGGAAGGGAGAAGGAG----CGGTAGTCATAAAA---GAAGGTGAGGAGTTGAAAGTAGTACCAAGGAGAAAGGCAAAAATTATCAAAGAATATGGAGAGAGAAA---------------------AACTGTGGGTGACAAGACTAACATGGAGGGTTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Simian_Immunodeficiency_Virus_Angolan_Talapoin -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAATTATACAATCGGGAGA------AATAGAATT---AGAAGGAGTACCCCACCAAAAAACAGTAGGAGGATTGGCAGGATACATTCAAGTACAAAGTTATAGTGCAGTAGAAATCCAATG---------------GGAAGACAAGAGGGCAAAAGACACAGTATTAGTA?GAC---CAACACCCATTA------ATATACTAGGGAGAAATTTCTTCGCGAAATTTGGAGTAACATTAA---ACATGGT---------TAGCACAGAAATACCAGTGATAAAAGTGAAGTTAAAGGAGGGAAAAGAACCCCCTAGGATCAAACAGT-GGCCCCTATCGAGAGAAAAAATAGAAGGGCTACAGGCCATCATCGGTGACATGGTAAAGGCAGGACAGCTGGAGGAAATAGGACCAGACAATCCATACAATTCACCAGTGTTTGCCATAAGAAAGAAGGACAAAACACAATGGAGAATGCTCATAGATTTCAGAGCGCTAAACCAAGCCACACAGGACTTTGCGGAAGTCCAACAAGGGATACCACACCCCTCTGGGCTCC?GCAAATGAAACAGATAACAGTGCTAGACATGAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Simian_Immunodeficiency_Virus_Chimpanzee --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAAAGGTTGGTCTCCGTGGAGCGGGGGATCAAAGAGACCAGGGAACTTCCTGCAGGGC------------------AGGAAGGAACCCACAGCTCCGCCCCTAGAGA------------------------------------------------------------------------------------------------------------------------------GTTATGGGTATCAGGAAGCA-----ACAGGA----AAGAGACAGGAGGAGGAGAGGGAGAAGGAAAAGGAACCCCTGTAT------------------------------------CCTCCGTTAACCTCCCTCAAATCACTCTTTGGCAGCGACCCCTCCTCGGAGTAAAAATAGAAGGGCAGCTAATAGAAGCTCTGCTAGATACAGGAGCTGATGATACAGTAATAGATAA------------TGTACAACT---AACAGGAAAATGGAGACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTTAAACAATATGACAACATAGCAATAGAAAT---------------TGAGGGAAGAAAAACAACAGGCACGGTATTGGTGGGAC---CAACACCAGTGA------ATATAATTGGCAGAAATATATTGACACAAATTGGCTGTACTTTAA---ATTTTCC---------TATAAGTCCCATTGAAACAGTGCCAGTAAAATTAAAGCCAGGAATGGATGGCCCTAGAGTAAAACAAT-GGCCTTTAACAGCAGAAAAAATTAAAGCATTAACAGAAATTTGTCAGGAAATGGAAAAAGAAGGAAAGATTTCAAGAATAGGGCCCGAAAATCCATATAATACACCAATTTTTGCTATAAAAAAGAAAGATAGTACAAAATGGAGAAAACTGGTAGATTTCAGGGAATTAAATAAAAGAACACAGGACTTTTGGGAAGTCCAGTTAGGCATACCACACCCGGCAGGTTTAAAAAAGAAAAAGTCAGTAACAGTGCTAGATGTGGGAGATGCTTATTTTTCCTGCCCATT---AGATGAAAATTTTAGGAAATATACAGCATTTACTATACCCAGTGTAAATAATGAAACACCAGGAATTAGATATCAATATAATGTGTTACCACAAGGATGGAAAGGGTCACCAGCAATTTTTCAAAGCAGCATGATAAAAATTCTAACCCCATTCAGACAGCAGCATCCA---GACTTAATAATTTACCAGTATATGGATGATCTTTATGTGGGATCTGATTTGGAACTAAGAGAACATAGAGAAAAGGTAGAGCTACTCAGACAGCATCTACTTACTTGGGGGTTTACTACCCCTGATAAAAAGCATCAGAAGGAGCCACCTTTTTTGTGGATGGGCTATGAGCTCCATCCTGATAAGTGGACAGTGCAGCCAATACAGTTACCACAGAAAGA------GACCTGGACTGTCAATGATATTCAGAAACTAGTGGGAAAACTAAATTGGGCAAGTCAAATATATCCAGGAATAAAAGTAAAACAGTTATGCAAGCTGATAAAAGGGACAAAAGCTCTAACAGACATAGTGACCATGACACAGGAAGCAGAA---------------------------------------------------------------------------------------------------------------------------ATGGAATTAGAAGAGAACAG{AG}GAGATTTTAA{AG}GGATCCAGTGCATGGGGTGTACTATGACCCAGAAAAGGAATTAATAGCAGAA?TACAGAAACAGGGAAATAGTCAGTGGACTTATCAAATTTTCCAGGAACAGCATAA---GA------ACCTAAAAACAGGCAAATATGCTAGGCAAAGATCAGCACATACTAATGACATAAGACAATTAGCAGAGGTAGTACAAAAAATAGCTACTGAAAGTATAGTAATCTGGGGAAAAACACC---AAAATTCAGATTACCTGTTCAAAAGGAGGTCTGGGAAACCTGGTGGTCAGAGTATTGGCAAGCCACCTGGATCCC---AGACTGGGA?TTCGTGAATACCCCTCCCCTTGTAAAATTATGGT---ACCAATTGGAAACAGAACCCATA------CCAGGAGCAGAAACGTTCTATGTGGATGGGGCAGCTAACAGAGAGACAAAGAAAGGAAAAGCAGGCTACGTCACTGATAGAGGCAGACAGAAAATAGTAAACTTAGAAAATACCACTAATCAGAAAGCAGAACTGACAGCTGTTTATCTAGCATTACAAGAT---GCAGAACATATAGTTAATATAGTCACTGATTCCCAATATGT------GTTAGGGATAATTCACTCCCAGCCAGATCAAAGTGAGTCAGAATTGGTTAATCTAATAATAGAAGAGTTAATAAAGAAGGAAAAAAGTTACCTTTCATGGGTGCCAGCACATAAAGGAGTTGGAGGAAATGAACAAGTAGATAAATTAGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCTGGGAATCAG------AAAAGT------------------TCTCTTTTTAGATGGTATAGATTAAGCACAAGGAAGAACATGAGGAAATATCATAACAATTGGAGAGCTATGGCAAGTGATTTCAATATACCACATATAGTGGCCAAAGAACTAGTAGCCCGTTGTGATAAATGCCAACT---------AAAAGGAGAGGCCATGCATGGGCAAGTAGACTGCAGCCCAGGCA--------TATGGCAATTAGACTGCACACACCTAGAAGGAAAAGTTATCCTGGTGGCAGTACATGTAGCCAGTGGGTACCTAGAGGCAGAGGTCATTCCTGCAGAGACTGGACAGGAAACAGCTTATTTTATTCTAAAATTAGCAGGAAGATGGCCTGTAAAAGTAATCCACACTGATAATGGGCCTAACTTTACCAGTAATACAGTTAAGGCAGCCTGCTGGTGGGCAGGCATCCAACAGGAATTTGGAATTCCCTATAATCCACAAAGTCAAGGAGTGGTAGAATCAATGAATAAGGAATTAAAAAAGATCATAGGACAAATTAGAGAACAAGCAGAACACTTGAGGACAGCAGTCCAGATGGCAGTGTTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACACTGCAGGAGAAAGAATTATAGACATCATAGCAACAGACATACAAACAACTAATCTACAAAA---ACAAATTTTAAAAGTTCAAAA----TTTTCGGGTCTATTACAGGGACAGCAGAGATCCCATT---------TGGAAAGGACCTGCCAGACTTCTGTGGAAAGGTGAAGGGG----CAGTGGTAATTAAA---GAGAGAGAGGAAGTTAAAGTAATACCCAGAAGGAAAGCAAAAATAATTAGGGATTATG---GAAA------------------------ACAGATGGCTGGTGATGATAGTATGGCAGGTGGACAGGATGAGAGTCAAGGCCTGG-----AATAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Simian Immunodeficiency Virus De Brazza''s Monkey' --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAAACTT---CCCTGGGGGAG---------GAGAGCCCCCAGGAATTTCATAGAGCAG------------------------------------------------------------------------------------------------------------------------CAACACCAGACATGGGGCATAGGGAAGTACATACCGGAGGGAGGGGACGAGATCTTCTCCTCTTCCAGGGTACCGGAACAGAAACCCCAGCAGCAGGAGGAGACGAGGAGAGGGAAATAC---------------------------------------------------CCAGATTTATCGGACTTGAAGTCCCTCTTTGGAGAAGACCAGTAACCACAATAGAGATAGAGGGAAGAAGGGTGCAGGTTCTATTAGATACAGGGGCAGATGATACTATAATTCATGAGAAAGA------TATTCAACT---TACCTCACCCTTTGTCCCAAAAACAGTAGGGGGTCTGGGAGGTTTTATAAATGTAAGATGTTATCCAGGGATAGAAATCCAATG---------------TCAAGGTAAGGTAGCAGTAGGGGAAGTCCTAGTGGGAG---AGACACCCATTA------ATATTTTAGGGAGGAATTTCTTAGCACCCCTAGGCTTCTCGATAA---ACATGCT---------AGAGAGTCAGATTCAATATACCCCAGTGAAATTAAAAGAAGGGAAGTCAGGACCAAAAGTCAAACAATGGGCCTCTAGCCAGGGAAAAGATAGAGGCTCTCAGGGAAATAGTGGGAAAGATGGTGGAGGAAGGCCAA-TGGCTCCTGCCTCACCCACCAATCCATATAACTCACCTGTGTTTGCCATTAAAAAGAAAGACAAGAACAAATGGAGAATGTTAATAGATCTTAGAGAATTGAACAAGGCAACACAACCAGTTTGGGAGGTCCAGACAGGGATCCCGCACCCAGCAGGTCTGCCACAGAAAAGGCAGATAACAGTTTTGGACATAGCAGATGCATACTATTCTATACCATT---AGATCCATCCTTTGCTCAGTATACGGCATTTACTATACCATCAGTTAATAACACAGCCCCTGGAGAGAGGTATGAGTTCAGGGTGCTGCCACAAGGATGGAGTGCATCACCAGCTATATTCCAACACACTGTTCATCGGGTATTGGAAGGATTTAGAAAGAAATACCCA---GATGTACTCATAGTCCAGTACATGGATGACCTATTGGTAGGGTCAGACAGAACAGAAGAACAACACAGACTAGTAGTCAAAACACTAAGAGATTATCTCCTAGAGAGGGGGTTAAAAACACCCCCAGAGAAATTTCAGGCAGAGCCCCCCTATCAGTGGATGGGATATGTCCTTCATCCAAAAAAGTGGACTACCCAACCAATTCAGATCCCTGAGGAAGA------GGAATGGACTGTTAATAAAATACAGAAACTAGTAGGAATCTTGAATTGGGCAAGCCAAATATATTCAGGGATAAAAACAAAACACCTGTGCAAGAGTATTAGAGGGGTTCCAGGGTTAACAGACCCTGTAAAGTTAACAGAAGAGGCACAG---------------------------------------------------------------------------------------------------------------------------GCCGAGCTGGAAGAAGCCAGACAGATCTTAAAAGAACAAGTGTCAGGGACCTATTACAAAGAACAGGAGGACCTCATAGCAGACATTACTAAGCTTTCAGAAGGGCAATGGGGATACACCATTAGACAGTCAAAGGGAA------------TCCTGAAAACAGGCAAATATGCAAAGGCAAAAGGGGCACATTTCAATGATTTTCATCAGATAGCAAAATTGATGATGAAGGTAGGAACAGAAAGCATAGTAACATGGGGGAGGTTACC---CACATTTAGGTTACCTGTCCAGAAGCAGGACTGGGATGGATGGTGGCATGAGCATTGGCAAGCCACTTGGATCCC---AGAATGGGAGGCGGTACACACTCCTCCCCTAGTCAGATTATGGT---ATTCCTTGGTTTCAGAACCTATA------AAAGAAGCAGATACATATTATGTGGATGGAGCAGCTAACAGAGAATCCAAGGAAGGGAAAGCAGGGTACATTTCAGAGAGAGGAAAACAGAGTGTAAAGGCCTTAGAAAACACTACCAATCAAAAGGCAGAATTAACAGCAGTTCTCATGGCCTTAGAAGAT---AGTGGGGAAAAGGTGAACATAGTAACGGACTCCCAGTATGT------ACTAAACATACTAACAGAACACCCCACAACCACTGAACATGAATTAGTAGAGAAAATAATTCAACAACTACAGAAGAAACAGGAAGTATATCTTCAGTGGGTGCCAGCTCATAAAGGTCTGGGAGGTAATGAACAAATAGATAAATTAGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAG-GGAATTAG------AAAGAT------------------CCTTTTTCTAGAAAGAGTAGAAGAGGCTCAG-GAAGATCACGA-TAAATACCACAGTAATTGGAAACAGCTAAGGGAGGAGTTTAATCTCCCCACCTTAGTTGCAAAGCAAATAATTAATCAATGTCCCAAATGTCAAAT---------ACATGGGGAACCCAAACATGGACAAGTCAATGCAGACTTGGGTA--------TTTGGCAAATGGACTGCACACATTTAGAAGGAAAAGTCATAATAGTAGCAGTTCATGTGGCTAGTGGATTTACAGAAACCCAGGTGTTAAAGGAGGAAACAGGAAAACAGACAGCTTTATTCCTGTTACAATTAGGGGCTAGGTGGCCCATACAACAAGTTCACACAGACAATGGACCCAACTTTATTAGTCAGGCATTTGCTGCCGCCTGTTGGTGGTTAGGGATAGAGCACACCACAGGGGTTCCATACAACCCACAGAGTCAAGGAGTAGTAGAAAACAAAAATAGACAATTAAAGGATACAATCACACAAGTTAGGGAAGATGCACAACGATTGGAAACAGCAGTAGCTATGGCTACTCACATTCTTAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACCCCTTCAGAAAGGATAGTCAATATGATTAATACAGAACTAGAAATAAAATACCTACAACA---AAAAATTTCAAAATTTTCAGG----ATTCAAAGTCTACTACAGAGAAGGAGCTGATCCCAGT---------TGGAAAGGCCCAGCAACACTCCTGTGGAAAGGAGAAGGAG----CAGTGGTAATCAAATTGGACACAGGGGATTTAAAAGTAGTTCCCAGAAGAAAAGCAAAAGTAATAAAGGACTATG---GAAA------------------------AGATGTGGGTAGTAAGATTGACCCACAAGATACCCATGAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Simian Immunodeficiency Virus Dent''s Mona' ----------------------------------------------------------------------------------------------------------------------------------ATGGAGCCCAGTGAGGGTCCAGCAGCAACCACAGTACCCACAAAATTTTCAAGAGGGGGGAAACAGACAATCTTGTCAGGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGAGGCAGAACAAGCAGTCCCATCAGGAGGACGAGGAGACAACGAGGGAG---------------------------------------------------------AGTCTTTATCCTTCGTTGAAGTCTCTCTTTGGAGACGACCAATAGGGCAGATCTGGGTTCAGGGACAAAGGGTAGAGGTCCTTATAGATACAGGGGCAGATGACACCATTATAGCAGAACAAGA------TATAAATTTGGGAACAGAGGGATGGATCCCAAAAACAGTAGGGGGAATAGGAGGATATATTAATGTTCAGGCATACCCAGGGATAGAAATTAAGCT---------------TATGGACAAAGTAGCGGTAGACACAGTATTAGTAGGAC---CTACACCCATAA------ACATCTTAGGAAGAAACTATCTTAGTAAGTTAGGAGTAACACTAA---ACATGGCAGTACA---GCAAATGCGGCCTCAAGTCACCCCAGTAAAATTAAAACCAGGATTTGATGGCCCTAGAATAAAACAAT-GGCCTTTAACTACAGAGAAATTAAAAGCTTTACAACAGATAGTGACACAGATGGAAAAGGAGGGAAGGTTGGAAAAGGCGCCACCCACCAACCCTTACAATACACCTGTGTTTGTAATTCCAAAGAAAGACAAAACACAATATAGGATGTTAATAGATTTCAGGAAATTAAATGAGGCCACCCAGGACTTCTGGGAAGTACAATTAGGTATACCACATCCTGCAGGATTACAACAGAAGGAACACATCACTGTGTTAGACTTGAAAGATGCATATTATAGTGTGCCTTT---GGATCCAGATTTTGCACAATACACAGCATTTACAGTGCCGTCCATTAACAATGAAGGACCAGGACAAAGGTACATTTTCAAAGTCTTACCACAAGGATGGGTAGGATCGCCTACCATTTTTCAGGCCACAGCAGATAAAATGCTTAGCCAATTTAGGAAGGCCCATCCT---GATGTGATTTTAATCCAGTATATGGATGATCTCTTGGTAGCATCAGATAGATCCCTAGAACAGCACAGGAAAATGGTTAAGGAACTAAGAGACTTCTTGGCAGTATGGGGCTTTGAGACCCCTGATGCCAAATTTCAAGAAACACCACCCATACAATGGATGGGGTATGAATTACACCCCAAACACTGGCAAATACAGAAAATAGACCTGCCATTGCCAGAGGATGGGCAGTGGACGGTGAATGCAATTCAGAAGCTAGTAGGAGTATTGAATTGGGCAAGTCAGTTGTACTCAGGAATAAAGACAAAAGAATTATGTAAGAGCATTAGAGGAGTAAAAGACTTAGGAGAAACCATTTCACTCACGGAGGGAGCAGAG---------------------------------------------------------------------------------------------------------------------------GCAGAGCTTAAAGAAGCACAAGAAATATTAAAAGAAAGTATTTCAGGAAGTTATTATAGGCCAGAGAAACCTTTGATAGCAGAGATCTCTAAATTAGGAGAAAATCAGTGGGGATATACAATCAAACAGGAAAAACATC------------TACTCAAAACAGGCAAATACCATAAGGACAAAGGAAGCCATTATAACCCATATCAACAATTAGCCAAAGTGATGGCAAAAATAGGAAGAGAAGCCTTAGTAATCTGGGGCAGACTTCC---TACTTTCAGACTCCCAGTAAGCAAGGTAGATTGGGATGCATGGTGGTCAGAATATTGGCAAGTTAATTGGATACC---TGACTGGGAAATGGTATCAACTCCACCCCTTCTAAGAAATTTTT---ATAATTTGGTATCAGAGCCCATA------GACAAAGCGCCCACCTATTATACAGATGGAGCAGCAAATAGACAGACTAAACAAGGAAGAGCAGGATATGTGGCCACCAATGGCAAGCAAAAGGTAGTAACCTTGGAAGAAACAACCAATCAAAAGGCAGAATTAATAGGAGTCTTAATGGCCTTACAAGAT---AGTCCCAACAAGGTCAACATAGTCACTGATTCACAATATGC------CCTAGGCATCATAGCAGGTACACCCACTACATCTGAACATCAGATAGTGGAACAGATCATACAAGCTATGCAAGGCAAGGAAGAAATATACATCACCTGGGTTCCAGCCCACAAAGGAATAGGAGGCAATACAGAAATAGACAAGCTAGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAA-GGGATCAG------ACAAAT------------------CCTATTCTTAGAACAAATTCCACAAGCTCAA-GAAGAACATGA-TAAATACCATAGCAATTGGAAAGAGATCAGAGATAAGTATGGCCTACCAACTATGGTAGCTAAGGAAATCATTAATGTCTGTCCAAAATGTCAGAC---------ACATGGGGAACCAATCAGAGGACAGGTGGATGCCTCTCTAGGAA--------CATGGCAGATGGATTGCACCCACTTAGAGAATAAAGTAATAATAGTAGCAGTAAATGCAGCCAGTGGGTACCTAGAGACAAAAATTTTGCCAGCGGAGACAGGCAAAGAAACAGCACTATTTTTACTGCAGATAGCTGCTAGATGGCCAATCACCAAATTACACACAGACAATGGACCAAATTTTATCAGTCAAGCCATGCAGGCAGCATGTTGGTGGGCAAATATCAAACACACCACAGGAGTTCCATATAATCCACAAAGTCAGGGTATTGTAGAAAATAAGAACAAGCAATTAAAGGAAGTTATAGCACTAGTAAGGGAAGATGCAGAAAGATTAGAAACAGCACTAGCAATGGCAACCCTCATTCTTAATTTTAAAAGAAGGGGAGGACTAGGGGATATGACAGCAGCAGAAAGATACATTAACATGCTAAATACACATTTAGAAATACAACATACCAAACA---------ACCAAAATTTTCGAA----TTTTAAGGTCTATTACAGAGAGGGAGCTAATCCGCAA---------TGGCAAGGACCAGCTGAGCTGCTTTGGAAAGGTGAAGGAG----CAGTTGTCATCAAGACACAGGCAGGAGACATCTTCCCGGTACCTAGAAGAAAGGCAAAAATCATCAAGCCATATAATGCAGAATCTAGGAAGGGAGAACAGAACAAAGGAATGGATAGTGAGACTGACATATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Simian_Immunodeficiency_Virus_Drill --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAATACT---CCCTGGGGCAG---------CGGGAAACCCAGGAATTTTCCTCAGGCC------------------TCGCTGACCCCATCAGCTCCTCCATTGCCAGGATACCTC------------------------------------------------------------CAGGAGGATCCGGCCGAGAGGATGCTCCAAAA-------------------------GTACATGGAGCAGGGAGCTCA-----------GCAGAAGAGACAACAGAGACAACAACAGCAGAAGAGGGGCCCCTACGAG------------------------------------GAGGCTTACAACTCCCTCAGTTCTCTCTTCGGCTCAGACCAACTACAATAGTAGAGGTAGAAGGGCAAAAGGTAGAGGCTTTACTAGACACAGGAGCAGATGATACAGTAATTCAAGG------------ATTGGAATT---AACAGGAAAATGGAAGCCACAGATTATAGGAGGAATTGGAGGAACTATTAATGTGAGACAATATTTTAATTGTGAAATTAAGAT---------------AGCAGGGAAAATTACTCATGCTTCGGTGTTGGTAGGCC---CTACCCCTGTAA------ATATTATAGGTAGAAATGTACTCTGTAAATTAGGAGCTACTCTTA---ATTTTCC---------TGTTAGTCAAGTAGAACCAGTAAAAGTAACACTAAAACCAGGAATGGATGGACCAAAGATAAAACAAT-GGCCCCTCTCCAAGGAGAAAATTGAAGCCTTGAAAGAAATATGTGAGCAAATGGAGAAGGAAGGTCAAATAAGTAGAATAGGTCCAGAAAATCCATACAACACACCGGTGTTTTGCATTAAGAAGAAAGATGGTACCAAATGGAGAAAATTAGTAGATTTCAGGCAATTAAATAAGGCAACACAGGACTTCTTTGAGGTGCAGTTGGGGATACCACACCCGGGAGGCTTAAAAGCATGCGAACAGATCACTGTACTGGATGTAGGTGATGCCTATTTCTCATGCCCTCT---GGATCCGGACTTTAGAAAGTACACTGCATTCACCATTCCATCGGTGAATAATCAGGGCCCAGGAATCAGGTATCAGTATAATGTCCTCCCACAGGGATGGAAAGGCTCACCTGCAATCTTCCAAGCTACAGCTGACAAGATCTTACAGCCATTCAGAGAGAAAAATCCA---GATGTGATTATATATCAGTACATGGATGATCTGTTTGTAGGAAGTGATAGACCAAAACATTTACATGAGCAGATGATTAAAGAATTAAGAACACATTTAAAGTTCTGGGGGCTCGAGACCCCGGACAAAAAATTTCAGGACAATCCTCCTTATGAATGGATGGGGTACCAGCTGCATCCAAAGAAGTGGACAGTGCAAGAAATTCGCTTGCCTGATAAAGA------AATTTGGACTGTTAATGATATTCAGAAATTAGTAGGAGTGCTTAATTGGGCTAGTCAAATTTATTCCGGAATTAAAACAAAGGAGCTCTGTAAATTAATTAGGGGAGCCAAACCCCTAGATGAAGAAGTAGAATGGACTAGGGAAGCAGAA---------------------------------------------------------------------------------------------------------------------------CTAGAATATGAAGAAAATAAACTAATAATAAAAGAGCAAATGCATGGGGTATATTATCAGCCAGAAAAACCCCTAAAAGCCAAGATACAAAAACTGGGTAATGGACAATGGTCATATCAGATAGAACAAGATGATAACAA---GC------CACTAAAAACAGGAAAATATGCTAAGGTAAAGAATAGTCACACCAATGATATGAGAATGTTAGCAGGACTAGTACAAAAGATAGCAAAAGAGGCACTGGTAATCTGGGGAAGGTTGCC---CATTTTCTACTTACCAGTAGAAAGGGAAGTTTGGGAACAATGGTGGCAGGAGTACTGGCAGGTAACATGGATCCC---TGATTGGGAATTTATATCAACACCCCATCTCATCAAGTTATGGT---ATAACTTGCTGAGTGACCCAATA------CCAGGGGAAGAAGTTTATTATGTGGATGGAGCAGCTAACAGAGTTAGTAAAGAAGGAAAAGCTGGCTATGTTACCTCCAGGGGAAAAGAAAAAGTAATAGCCATAGAAGAAACCACCAATCAGAAGGCTGAATTACAGGCCATTCTGTTAGCCTTGAAGGAC---TCTGGTCCAAAAGTCAATATAGTGACGGATTCACAGTACGC------CATGGGTATAATATCCTCCTCCCCAGAAATCAGTGACAATCCTATAGTGAATCAAATTATAGAACAAATGATCAGTAAAGAAGCAGTTTACTTAAATTGGGTACCAGCACATAAAGGAATAGGAGGTAATGAGGAGGAGGACAAACTAGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGA-GGAATAAG------ACAAGT------------------GTTATTCCTAGATAACATGGAAAAAGCACAG-GAAGAACATGA-TTTATACCATAATAATTGGAGATCCTTAGCACAAGAATTTGGTTTACCAGGGATAGTGGCAAAAGAAATAGTGGCACAGTGTCCTAAATGTCAAAT---------ACATGGAGAGCCAATACATGGCCAAGTAGATGCAAGCCCAGGAA--------CTTGGCAAATGGACTGCACACATTTAGAAGGAAAGATAATCATAGTGGCAGTCCACGTAGCAAGTGGACACATAGAAGCAGAAGTAATACCAGCAGAAACAGGAGAGAAAACAGCTTATTTTCTGCTAAAATTAGCTGGCAGATGGCCAGTATCACACTTGCACACAGATAATGGACCAAATTTCACCAGTGAAAAGGTAGCAACAGTATGCTGGTGGGCTAAGATAGAGCATACCACAGGAGTTCCCTATAACCCCCAGAGTCAAGGAGTGGTAGAATCAATGAACAATCAGCTAAAGAAAATTATAGGACAAATTAGAGATCAGGCAGAAAAACTAGAGACAGCAGTTCAAATGGCAGTACTGATTCACAATTTTAAAAGAAAAGGGGGGATAGGGGAGTACAGTGCAGCAGAAAGAATAGTAGACATTATAGCCTCTGACCTCTTAACAAGCAAACTACAACA---AAATATTCTCAAAATTCAAAA----TTTTCGGGTTTATTACAGAGAGGGAAGAGATCAGTTG---------TGGAAAGGACCAGCAGAACTTGTCTGGAAAGGGGAAGGAG----CGGTGGTCATCAAG---GAAGGTACTGACTTGAAAGTAATACCTAGAAGAAAAGCAAAGATCATTAAAGATTATG---GAAA------------------------AAATGTGGATAGTCATACCAACATGGAGAGTTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Simian_Immunodeficiency_Virus_Gabon_Talapoin ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCATGGAACAGATCCCAGAGGCCCAA-GAGGAGCATGA-GAGATATCATAACAATTGGAGGGATCTAAAAGCCAGGTTCAAATTACCCACCATAGTGGCAAAAGCTATTATAGAAAGTTGCCCCAAGTGTCAAGT---------TCATGGGGAACCTAGGACAGGACAAACCAATGCAGATGTAGGGA--------CATGGCAAATGGATTGCACCCACTTGGAAGGACAGGTGATCTGTGTAGCAGTGCATGTAGCCAGTGGCTACATAGAGACAAAGATACTGCCCAGGGAGACGGGTCGGGAAACCGCCCTGTTTCTTTTACAGATAGCAGGCAGATGGCCAATAAGTCACTTACACACAGATAATGGCCCCAACTTTGTCTCGCAGGAAATGGCCGCCATGGTATGGTGGCTAAAGATAGAGCACACAACGGGGGTACCATATAACCCTCAGTCTCAGGGCAATGTAGAAAATAAAAATAAGCAATTGAAAAAGACCATTCAACAAATTAGGGATGAGGTGCAGTACCTAAGCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Simian Immunodeficiency Virus L''hoests Monkey' --------------------------------------------------------------------------------------------------------------ATTTGCACAGTGCCCAAAACCAAAAGGAAAGGTGAATTTTTTAGGATATGGT---CCCTGGAGCAG---------CAAACCTCCAGGCAATTATCCTCTACTG------GGAGGAGCTGCAGGGAGAATTCCATCAGCTCCCCCAATGGAGAGTGCTCCAACAAAAGCAGAGAGAGCACTGGAG---------------------------------------------------------------------------------------------ACTTACAGGACTTTAGGACAACAGCTGAAAAGGCAGCAGCAGCAAGTCCCACAGAAATGT---------------------------------------------------------GTGGACGAGCCCTGCCTGAATTCACTCTTTCCAGACGACCAATAGAAAGTATATTGGTCAATGGGCAACCAGTGTCAGCACTGTTGGACACTGGGGCTGATGACACAATTTTTTCAGAAAATTC------AGTAAGAAT---AGAAGGACCCTATACTCCAAGAGTAGTAGGGGGCATAGGGGGGCAAATTAGGGTAAAAGAATATAGAGATGTCTTTATAGAAAT---------------AGCAGGAAAAACTACAGTAGGGACAGTCTTATTAGGAC---CTACCCCAGTAG------ATATTGTAGGGAGGAATATTTTAACTGCAATGGGGGCCAAATTGA---TTTTAGCTCAGTT---AAGTGATAAAATTCCTATTACAAAGGTATCTTTAAAACCTGGGTGTGATGGACCAAGAGTAAAGCAGT-GGCCTCTATCAAAAGAGAAAATAGAAGGCCTACAAGCTATTTGTGATAGGTTAGAAAAAGAAGGAAAAATATCTCCAGTGGATCCAGGGAACCCATACAATACTCCAATATTTGCTATCAAGAAGAAAGACAAAAATGAATGGAGAAAGTTAATTGATTTCAGAAAGCTCAATGAATTAACTCAAGACTTTCATGAGCTACAATTAGGTATTCCACACCCAGCAGGTATCAAGAAATGCAAACAGATTACAGTAGTAGACATAGGAGATGCCTATTTCAGTATCCCTTT---AGATCCAAATTACAGAAAGTATACAGCATTTACTATACCTTCTCTCAATAATCAAGAGCCAGGAAAAAGATATCAGTACAATGTGCTGCCACAAGGGTGGAAGGGGAGCCCTTGTATATTTCAGGGAACAGTAGCAGGACTTCTCTCAGAGTTTAGGAAATTAAATCCA---GACATGATCATTTACCAATATATGGATGATTTATTCATAGGATCAGATAGAGAGAGAAAAGGACATGATCAGGCAGTAAAAGAACTCAGAGAACTTCTTATGACATGGAACTTAGAGACACCAGAAAAGAAGTTCCAAGCAGAGCCACCCTATCATTGGATGGGTTATGTACTGCATCCTGATAGGTGGGAAATAGAAAAGATTAAATTACCAGAGATGGATCTAACAAAAACTACAGTAAATCAAATACAGAAACTGGTGGGAGTACTTAATTGGGCAGCTCAATTGTATGATGGTATTAGGACAAAAGAACTCTGCAAATTAATAAGGGGAGTAAAACCCTTGGAAGAAATCATAAACTGGACAGAGGAAGCCTTG---------------------------------------------------------------------------------------------------------------------------GAAGAATATGGGCAGAACAAAGAGGTACTTAAAGAAAAGATGCAGGGAGCCTATTATGACCCAGAAAAGGAACTTATTGTCAGGGTACAGCAAAACAAAAAGGGGATAATTACTTTCCAGTGGAGACAAGGAAATAACA------------TCTTAAGAGCTGGGAGGTATCAAAGACAGAAGGCAGCACACACAAATCCCCTACAGAAATTAGTAGAAGCTATTCAGAAGATAGGAAAAGAAAGCATAGTCATCTGGGGCTTTGTGCC---AAAAATTCAAGTCCCAGTGACTAGAGAAGTCTGGGAGCACTGGTGGAGCGACCACTGGCAGGTTACATGGATTCC---AGACTTAGAATTCATTTCTACCCCGCAATTAGAACAAGAGTGGT---ACATTTGGGAGGCAGAACCCATA------ATAGGGGTAGACACCTACTATGTAGATGGAGCAGCAGAAAAGGTAGGAAAAACAGGAAAAGCAGGATATATAACACAATCAGGGAAAGAGAAAGTAAAGGAGTTAACTGACACCACAAATCAGCAAGCAGAACTAGAGGCAGTTCTAATGGCATTACAAGAT---AGCAATAGTAAAGTAAATATAGTAACAGATTCACAATATGT------AATGAAAATATTGTCACAAAGACCAACAGAAACAGAACACCCCATAGTAAAAGACATCATAGAACAATGCAAGCAGAAAGATCAAGTTTATCTAGGATGGGTGCCTGCTCATAAAGGAATAGGAGGTAATCAAGAGGTAGACCACCTAGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAA-GGTATAAGACAGAAACAGGT------------------CATGTTTCTAGAAAAGATAGAACCTGCAGTA-GAAGAACATAG-CAAATTCCATAACAATGCAAAGGATCTAGAAGAAAAATTTAACCTACCCCCCATGGTAGCCAAACAAATTGTCAATGACTGTGCAAACTGTCAAAA---------GAAAGGAGAAGCCATAACAGGACAAGTGGATGTCTCAGTGGGTA--------TTTGGCAGCTAGACTGTACTCACTTAGAAGGACAGGTCATTATAAATGCAGTCCATGTGGCCTCAGGCTTCATGGTTGCAGAAGTTATACCAGATGAGACAGGAAAAACAACGTCACATTTCCTGTTAAAATTATGCAGTAGATGGCCTGTAAAACAAATACATACAGACAATGGTCCAAATTTTGTAAGTAAGGAGGTACAGGCAGTAACCTGGTGGATAGGGATAGAACATACAACTGGGATACCTTATAACCCTCAGAGTCAAGGGGTTGTAGAAGCAAAAAACAAAGTTTTAAAAAGTATTATAGAAAGAGTAAGAGAAGATGCACAGCAACTAAAAACAGCAGTACTAATGGCAGTCCACATTCATAATTTTAAACAAAGGGGAGGACTAGGGGGGCTTACACCAGCAGAGAGGTTTATTAATATGATTAATGCAGAACTAGAAACACAATATCTACAAAA---ATTAAATTCAAAAATTTTAAA----ATTTAAGGTTTATTACAGACAAGGAAGAGATCCTCAG---------TGGAAAGGACCAGCGCAACTTCTGTGGAAAGGAGAAGGTG----CTGTAGTGGTAAAA---GAAGGGGAGAACATCTTCTCAGTCCCCAGAAGAAAAGCAAAACTAGTAAAAGATTATGGAGAGGG------------------------ACCAAAGGATAGTGAGAGTAGCCTGGATAACAACTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Simian_Immunodeficiency_Virus_Mandrill --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAATGCT---CCCTGGGGCAG---------TGGCAAGCCCAGGAACTTTCCTGCCATG------------------CCACTGACCCCATCAGCACCCCCGATGCCAGGG------------------------------------------------------------------ATGGAGGATCCAGCAGAGAAGATGTTATTAGA-------------------------CTATATGAGAAAGGGGCAACA--------ACAGAGGGCAGCAAAGGAGACCAAGCAGGAGAAGGACAAGGGTCCCTACGAG------------------------------------GCAGCTTACAACTCCCTCAGTTCTCTCTTTGGAACAGACCAACTACAGTAGTAGAAATAGAGGGACAAAAGGTAGAAGCCCTACTGGACACTGGAGCAGATGATACAGTAATCAAAGA------------TGTAGATTT---AACAGGAAATTGGAAACCCCAAATTATAGGAGGAATTGGAGGAGCAATTAGGGTGAAACAGTATTTCAATTGTAAAATAACAGT---------------AGCAGGAAAAAGTACTCATGCTTCAGTGCTAGTGGGCC---CTACCCCTGTAA------ATATTATAGGTAGAAATGTTCTTAAGAAGTTAGGATGTACTCTGA---ATTTTCC---------TATTAGTAAGATAGAGACAGTAAAAGTAACACTAAAACCAGGAATGGATGGACCAAGAATTAAACAGT-GGCCACTGTCTAAAGAAAAGATTTTAGCCTTACAGACAATATGTGATGAAATGGAAAAGGAAGGCAAAATCTCTAGAATAGGTCCAGAAAATCCATATAATACACCAGTATTTTGTATAAAAAAGAAAGATGGAACCAGCTGGAGAAAATTAGTAGATTTTAGGCAATTAAATAGAGTGACTCAGGATTTCTTTGAGGTGCAGCTAGGAATCCCACATCCGGGAGGCTTAAAACAATGTGAACAAATCACAATATTGGATATAGGAGATGCCTATTTTTCATGTCCTTT---GGATGAGAGCTTTAGAAAGTACACTGCATTTACCATTCCATCGGTAAATAATCAAGGCCCAGGAATCAGGTACCAGTATAATGTTCTTCCACAGGGATGGAAAGGCTCTCCGGCAATATTTCAAGCAACGGCAGACAAAATTCTAAAAACATTCAAAGAGGAATACCCA---GAAGTATTAATTTATCAATACATGGATGATCTGTTTGTGGGAAGTGATCTGAGTGCGTCAGAGCACAACAAAATGGTAAATAGGTTGAGGGAACATTTAAGGTTCTGGGGGCTCGAGACCCCAGACAAAAAGTTCCAAAAAGAACCTCCTTTTGAGTGGATGGGGTATGTGCTGCACCCACAGAAATGGACAGTCCAAAAGATACAGCTGCCAGAAAAAGA------GACATGGACAGTAAATGATATTCAGAAACTGGTAGGAAAACTCAATTGGGCAAGTCAAATCTATTCCGGAATTAAAACAAAAGAGCTCTGCAAATTGATCAGAGGGGCAAAACCTCTAGATGAAGTAGTAGAATGGACTAGGGAAGCAGAA---------------------------------------------------------------------------------------------------------------------------TTAGAATATGAAGAAAATAAGTTAATAGTGCAGGAGGAAGTACATGGAGTTTATTATCAGCCAGGAAAACCTCTGATGGCCAAGGTACAGAAACTGACACAGGGACAATGGAGCTATCAGATAGAACAGGAAGAGAATAA---GC------CTCTTAAGGTAGGGAAGTATGCTAGGACAAAACATGCCCACACAAATGAGTTAAGGGTGCTTGCAGGATTAGTACAAAAAATAGCCAAAGAGTGCATAGTGATTTGGGGAGAATTGCC---AAAATTCTATCTCCCCCTGGAGAGGGAAGTATGGGATCAGTGGTGGCATGATTATTGGCAGGCAACATGGATCCC---AGAATGGGAATTCATCTCAACACCACCACTAATAAGGTTGTGGT---ATAACCTGTTAAAAGAACCAATA------CCAGGGGAGGATGTCTATTATGTGGATGGGGCAGCAAATAGAAACTCTAAGGAAGGGAAAGCAGGATACTATACAGCTAGGGGAAAAAGTAAAGTAATAGCCTTAGAAAACACAACTAATCAGAAAGCAGAATTAGAGGCAATACTGTTAGCCTTGAAAGAT---TCAGGTCCTAGGGCAAATATAGTCACAGACTCACAATATGC------ATTAGGCATACTTTCAGCCACTCCAGATCGATCAGACAACCCTATAGTTAGAGAAATAATCAACCAAATGATAGCCAAAGAAGCTGTATACTTAGCATGGGTACCAGCTCATAAAGGCATAGGAGGCAATGAACAAATAGACAAATTAGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAA-GGAATCAG------ACAAGT------------------ACTATTCCTGGAAGGAATAGATAAAGCTCAG-GAGGAACATGA-CAAATACCATAATAATTGGAGATCATTAAGTCAGGAATTTAGCATACCCCCTATAGTGGCAAAAGAAATAGTTGCACAGTGCCCAAAGTGTCAGGT---------AAAAGGAGAACCTATCCATGGACAGGTGGATGCGGCCCCAGGAA--------CATGGCAAATGGATTGCACCCATCTAGAAGGAAAGGTTATCATAGTAGCAGTCCATGTGGCCAGTGGATATCTAGAAGCAGAAGTGATACCAGCAGAAACAGGAAAAGAAACAGCACATTTCCTGCTAAAACTAGCAGGAAGATGGCCAGTGAAACATTTACATACTGACAATGGTCCAAACTTTGTCAGTGAGAAGGTAGCCACAGTGTGTTGGTGGGCTCAGATAGAGCACACCACAGGAATACCCTATAACCCCCAAAGTCAAGGAGTTGTGGAAGCAAAAAATCATCATCTTAAGGTAATTATAGAGCAAGTTAGGGATCAAGCAGAGAGACTGGAGACAGCAGTACAAATGGCAGTACTCATTCACAATTTTAAAAGAAAAGGGGGGATAGGGGAGTACAGTCCAGGAGAAAGAATAGTGGATATAATAACAACAGATATTCTAACTACCAAATTACAACA---AAATATTTCAAAAATTCAAAA----TTTTCGGGTTTATTACAGAGAAGGAAGGGAGCAGCTC---------TGGAAAGGACCAGCAGAACTCATTTGGAAAGGAGAAGGAG----CAGTGGTAATCAAA---GAAGGAACAGACTTAAAAGTTGTGCCCAGAAGAAAAGCTAAAATAATCAGGGATTATG---GAAA------------------------AACAGTGGATAGTAATCCCCACATGGAGGATAGACAGGAGACAGCTTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Simian_Immunodeficiency_Virus_Mantled_Guereza --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGG----------------GGCAACCAGGGGGGTGGAGCTACAGACAGCCATCTTCCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGATGAGCAAAGACCTGCCACCCAGGAGGGAGAAGGGGGAG---------------------------------------------------------AGTCTCTATCCCTCCTTGAAGTCTCTCTTCGGAGACGACCAATAGTTATAGTAGAAGTAGAAGGACAAAAGTGCCAAGCGCTGTTAGATACAGGAGCAGATGATACAGTTTTTAAAGAAGAAGA------TGTTCAATT---AACAGGCGCTTGGACAGCAGTACAAATTCAGGGAATAGGGGGAGCAATCAGAGTAAAACAGTATAGAGATAAAATTCTAAAGAT---------------GGGAGGAAAAGAATACAGAGGAGATATCTTAATAGGAC---ACACCCCCATAA------ATATAGTAGGTAGAAATATGTTAAA------AGAAGGGAAATTAG---TAGTAGCTCAATT---ATCAGATAGGATCCCAGTCACCAAGGTGACGTTAAAAGAGGGCATGGATGGGCCAAAAGTAAAGCAGT-GGCCCTTAAGCAAAGAAAAAATAGAAGGTTTACAAAAGATATGTGAAAGATTGGAAGCAGAGGGAAAAATAGAAAAAGCAGAATTAGGGAATCCATATAATACACCAATATTTTGCATTAGGAAAAAAGATAAAAATGAATGGAGGAAATTAATAGATTTCAGGGAGCTAAACAAGAGAACACAAGACTTCATGGAAGTCCAATTAGGGATACCACACCCAGGAGGTCTTATAGAAAAGACCCATATAACAGTATTAGATATAGGAGATGCCTATTTCTCAATTCCCTT---GGATCCGGATTATCAAAAGTACACAGCTTTTACAATCCCATCAGTGAACAATTTGGCACCAGGGACTAGATATGTGTACAAAGTGCTACCGCAGGGTTGGAAAGGGTCTCCAACAATCTTCCAAGGAACAGTAGCAAGAATCCTAGAACCGTTCAGGAAGAGAGGACAA------TTGCAAATAGCTCAGTACATGGATGATTTATATCTAGGATCAGATCTGCCTTTAGAGGAGCATAGAAGGGCAGTACAGGAGCTCAGAGATGCACTCTTGTACTATGGGTTAGAGACACCAGAAAAGAAATACCAGGCAGATCCTCCATACAAGTGGATGGGCTATGAATTACATCCTAAGCAATGGAAATTACAAAAGGTCAAAATTCCAGAACAGGA------TAAGTGGACAGTAAATGATATACAAAAATTGGTAGGAGCCTTAAATTGGTTAAGCCAATTATACCCAGGAATCAGGACAAAGGAGATAAGTAAATGCACTAAAGGTAAGAAGCATTTGTTGGAGGAAGTGCAGCTTAGTGCAGAAGCAGAA---------------------------------------------------------------------------------------------------------------------------GAGGAGCTACAAGATAACAAACAGATAATCAAAGAAGAAGTTCAGGGAGTGTACTATATACCACATGAGGACATTTGGGTAGACATTTTCAGGTTAGGGAAAGGACAATGGGGCTATGCAGTCTGCCAAAAACATGGAA------------CGCTAAGAAGAGGAAAACATAACACAGGCAAAAATCAGCACTTTAATAGTATGCAGGAGTTAGCTTCAGTTATACAAAAGATAGGTAGGGAAGCCATAGTCACCTGGGGAAAGGTGCC---CAAAATGAAAGTCCCAGCAAAGAGAGAGGATTGGGAACAGTGGTGGAGTGACTATTGGCAAAGTGCTTGGATCCC---AGAGATAGAGTTTGTCTCATCCTCTTATGTAGTAAAATTAGTAT---GGAACTTGGTTTTAGAGCCTCTG------AAGGAGGCACCAACTTATTGGACAGATGGAGGATGCTCCAGGAAATTAGGAGCGGGAAAGGCAGGATGGATAAATTCAAAAGGAGAAGAAGAAGTAGTCAATCTTCATGAAGGGTCAAATCAGCAAGCAGAGCTGACAGGAGTTTTGCTAGCTCTAAAACAT---GGGCCAAAAAGAATGAATTTGGTAACAGACAGTCTTTATGC------ATTAGGGATAATTACTGGGCAGCCATATGATCAGCTTCCATCTAGTAGAGGGGAGATTATTCAGGCAGGTATGGCTAAAGAAGCCATTCATGTAGCCTGGTGTCCAGCACATAAAGGGATAGGAGGAAATGAACTGATAGATCAAAAGGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGTAAG------ACAGGT------------------AATGTGGATAGATAAAATAGAAGCAGCAGAA-GAAGACCATCA-AAAGTTTCATAGTAATGTGCAGTATCTAAAAGAACAATTTGGGTTACCCACTGTAGTAGCAAAAGAAATTTGGGAAAGATGTTCAGAGTGTCAGAA---------CAAAGGACAAGCTGTTCATGGCCAGCTAGATTATAGCTATGGCT--------TATGGCAATTAGATTGTACTCATGAGGAAGGAAAGGTTATCTTAGTAGCAGTACACGTCTGTACTCTGTTCTGCTGGGCAACCATATTAAAGAGAGAAACAGGGGAAGAAACAGGTAGGGCCCTCATAAAATTGGCTAGTCAGTGGGAGGTTAGACAAGTTCACACAGATAATGGGCCAAATTTTGTAAGTCAGCACTTTAAGGCAGCAGTGTGGTGGCTAGGAATAGCACACACCACAGGACACCCCTATAATCCTCAATCACAAGGAGTTGTAGAGCAGAGAAACAAGGATGTTAAAAGAAAGATTAAGAAAATGAAAGATCAAGCAGAAACATTAGAAAGCAAAGTAGCAATGGCAGTCTATGCGCTCAATTTTAAAAGAAAGGGAGGATTAGGGGGGAAGAGTCCATGGGAAAGACAAGTAGAAAGAGCAATAATAGAATTAGATACACAAAACCTAACAAAATTACAAAATCAAAAATTTAAAAA----TTTTAAGGCCTACTGGAAAGAGCACACAGGAGAG------------TGGCAAGGACCAGGAGAACTGGTGTGGAAAGGTGAAGGAG----CGGTAGTCATCAGAAATTCTCAAGGTACCTTGTTTGTGAAACCTAGAAGAAAAGTAAAGATCACCAGACTCCAATATGGAGA------------------------AGATGTGGGCAGTGAGAATTTGTTATCCAATGGGCAAAAGGAAGCCGAAACCGTTAAGGGAATGGATTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Simian_Immunodeficiency_Virus_Mona_Monkey -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTATTGGACACGGG{AG}GCGGACGATACCATCGTCCAAGA{AG}CAAGA------CATAAATCT---AGGAGAAAATTGGACACCCAAAATGGTAGGGGGAATAGGAGGCTTAATACAGGTTAAGCAATTCAAAGGGGTAACGGTATCCTT---------------CCAGGGTAAAACAGTGAGAGC{AT}ACAGTTTTGCTGGGAC---C{AG}ACCCCAATTA------ATATTTTGGGGAGAAACGTCCTCTCAAGGATGGGGATAACCCTGA---ACATG{CT}CCCAGGG---AATCGCCCAATCCCCATCCTTGACAGTGACCCTTAAACCAGGAAAAGATGGGCCAAAATTGAAACAAT-GGCCCCTCTCTAAAGAAAAGATAGAGGCTCTCACCACCATT{AG}CCCGGGAGATGATAGAATTAGGCCAATTGGAAGAAGCAGAGCCAACCAATCCATATAATTCTCCTTGCTTCGCGATAAGGAAAAAGGATAAAACCAAATGGAGGATGCTCATAGATTTCAGGGAATTAAACAAAGCAACACAAGATTTCTTTGAGGTACAATTAGGAATTCCACACCCGGCTGGACTCCAGAACATGGCAAATATAACTATAGTGGACATGAAAGATGCCTTTTACAGCATCCCTCT---GGATGAAAATTTTAGGAAATATACTGCATTTTCAATACCTTCAGTAAATAATGCAGAACCAGCCGTGAGATATCAGTTCAGAGTGTTGCCCCAGGG{AG}TGGAAAGGATCCCCAACAATATTTCAGTACTCAGCATCAGAGCTGCT{AG}AAAG{AG}AATCAGGAGAAAATATCCA---GAGGTCACCCTCATCCAGTACATGGATGATCTACTCATAGGTTCAGACCATTCCCTACCTGAACACAGGAAGATAGTAACAGCCATTAGAACGCT{AG}CTATCAGAAAAGGGGATTCAAACACCAATAGAGAAATATCAGGACAAGTACCCATTGCAGTGGTTGGGGTATGAACTCCACCCCACCCATTGGACAGTCCAAAAGATAGAACTGCCAGAACAAGA------CCAGTGGACAGTCAATGGGATCCAAAAATTAGTAGGGAAATTAAACTGGGCAGCGCAGATCTACCCAGGAATCAAGACAAAGCATCTATGCA{AG}ATGTATCCG{AG}GGG{AG}TAAAAGCCCTAACGGACATAGTGGAGCTATCAGACTTAGCCCAA---------------------------------------------------------------------------------------------------------------------------GCAGAATTAGCAGAAAATAGGGAAATTCTAAGTCAACAGTCGACTGGGGGATATTACGACCCCCAGCTCGACTTGAAGGTAGAGATTACCTCCCTGG{CT}AGAAGGACAGTGGGGGTAC{AG}GGTATTTCCAGGAA{AG}ATAGGG------------TTCTAAAGACAGGCAAATTCGCAAAGATTAAAAATGCCCACTCCAACACATACCAGCAATTGGCAGATGCTGTAACCAAACTAGGGAAGGAGGCCTTGGTCATTTGGGGAAAGCTACC---AATATTTAGATTACCAGTAAACAAAGAACAGTGGGACACATGGTGGGCCGACAATTGGCAAGTCACTTGGATACC---AGAGATAGAGCCAGTACACTCTCCACACCTGCTTAGACAATGGT---ACACCTTAGTGCAA{AG}ATCCCATT------GAACACGCTCCCACCTACTATGTAGATGGGGCGGCTAACAGAGCATCAAAAGAAGGGAAGGCAGGATATGTCACCAGTACAGGCCAAAGAAAGGTAATTCCATTAGAGCAGACTACCAACCAGAAGGCTGAACTAGAAGCAGTGCTTTTAGCATTGCAAAAT---GGGCCCGCTAGTATGAATATAGTAACAGACTCACAGTATGT------CATGGGAATCCTAGCATCAAAGCCAGAGGTCTCGGAGTCCCCAATAGTAGAGAAAATCATCCAGCAGCTCCTAGGAAAAAAGCAGGTATATTTGTCATGGGTCCCGGCCCACAAAGGCATAGGGGGAAATGAAGAAGT{AG}GACAAATTAGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G{CT}CAA-GGGATCAG------ACAGGT------------------CCTCTTCATGGAGAACATTGAACC{AG}GCCCGA-GAGGATCATGA-AAAATATCACAGCAATTGGAAATATCTCAGGGATACTTATGGCATTCCAACACTCCTAGCCAAAGAGATAGTCAACCATTGCCCCAAGTGTCACAC---------ACAAGGAGAACCCAAACATGGACAGGTAGA{CT}TCAGATATAGGGA--------TATGGCAAATGGATTGCACTCATTATGAAGGAAGTATCATCCTAGTAGCCGTTCATGTAGCTAGTGGCTACGTTTGGGCCAAAATTCTTCCCAGAGAAACAGGGAAAGAAACAGGCATTGCCCTGTTGGAACTTGCAGCGACATGGCCAATACATCATGTACACACTGACAATGGACCAAATTTCACCAGTCAGGAATTTGCAGC{CT}GCTGCATGGTGGGCAAACATAGAACACAGTACTGGAGTGCCCTACAACCCACAAAGTCAAGGTGTAGTAGAAAACATGAATAAGCAAATCAAAACCACATTAGGGAAAATCAGGGATGAAGTTCAGTTCCTCTCTACAGCACTGGCACAAACGCTCTACATTCTAAATTTTAAAAGAA{AG}GGGAGGAATAGGGGATATCAGTCCAATAGAGAGGTTAGTCAACATGATTCATACAGATTTAGAACTACAACACTCAAACAA---CCAAATTACAAAATTTTCGAA----ATTTCGGGTTTATTTCAGAACAGGCGCTGATCCTTCG---------TGGAAGGGACCAGCACATCTTCTCTGGAAGGGGGAAGGAG----CTTTGGTGATTAAGACAGATCAAGGTGAGGTAATAACAGTACCACGCAGGAAGGCAAAGATCATTCGCCCTTATGGCTCCAAGGA---------------------AGATGTGGGTAGTAAGCCCAGTGCACATCAGATCAGAGAGGTGGATGGAATGGCTGATTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Simian_Immunodeficiency_Virus_Mustached_Guenon --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGGATCCCTTCGGCCTCCAGAA---------AAGGAGGCCGAGGAACTTCCCCCAGACC------------------TCTCTCTTGCCAACTGCTCCGCCAGAACAGGAGGGG---GAATTGGTCAATCT-------------------------------------------------------------------------------------------------------CTCTCCAGCAGTGGG-----------------TCCCGGGGAGGGGAAACAGGACAGGAAG---------------------------------------------------------AGTCTCTATCCTTCCCTGTCATCCCTCTTTCAGGACGACCAGTCAGACCAGTAGAGATAGAAGGGCAGGTGGTGTCAATGCTGCTCGACACCGGAGCAGATGACACCATAATCCAGGATGCCCA------TATACACCT---AGAAGGACCATGGAATCCCAAATCAGTAGGGGGAATAGGGGGAAACATATCAGTCAAAGAATATAGGGGAGTACAGGTTTGTTT---------------CAATGGAAAAACTATTAGGGCAACAGTATTAGTAGGGC---CAACACCTATAA------ATATAATGGGGAGAAACTGTTTAAGCAAATTTGGCATTACTCTAA---ACATGAT---------ACAGGGAAAATTAGAACCAATAAAAGTGACCCTAAAAGAAGGAGCAAAAGGGCCAATGGTCAAGCAAT-GGCCTTTGACCCAGGAAAAGATCAGGGCCTTGGAGGACATAACCCAGCAGATGCTAAAAGTAGGCCAAATAGAGGAAATAGGACCAGAGAATCCTTATAATTCTCCATGCTTTGCAATTAGGAAAAAGGACAAATCTAAGTGGAGAATGCTAATAGATTTCAGGCAATTAAATGAGGCTACCCAAGAACTCGCAGAAGTTCAACTAGGAATCCCACATCCAGCAGGATTAATAGAGCATGAGCACGTTACAATAGTGGATATCAAGGACGCCTTTTACAGTGTCCCCCT---AGATCCAGACTTTAGGAAGTACACAGCCTTTTCGCTGCCTCAGGTAAACAACTTGGGACCAGCAAGAAGATATCAATTCAAAGTGCTACCACAGGGCTGGAAAGGGTCTCCTACCATCTTCCAGTTCACAGCAGCCAAACTCTTAGAAGAGATTAAGAAAGCAAACCCA---GATGTCACTCTCATCCAATACATGGATGACCTCCTGATAGGATCCAACAGAGAATTATCAAGCCACAGGAAAGTAGTAGCACAGATTAGAAACATGCTCTTAAAGCTTGGGATTCAAACCCCTCAAGAAAAATTTCAGGAAGACTACCCAGTCCAATGGTTAGGGTATGAGCTACACCCCCGGGGCTGGAAAATACAGCCCGTAGCATTGCCACAACAAGA------AGTTTGGACAGTTAATGATGTGCAAAAGCTGGTAGGGAAATTAAATTGGGCAGCACAAGCATACCCAGGTATCAAGACAAAGCAATTATGCAAATGCATCAGGGGAGTAAAATCTCTGACTGAAGAGGTCCAGTTGACAGAGGAAGCACAG---------------------------------------------------------------------------------------------------------------------------GCAGAATTGGCAGAAAATCAGGAGATCCTTCAACAGACAGTCCAGGGGGCATACTATGACCCAGAACAGCCATTAGTGGCAGAAATTGTCTCACTAGGAGACTCACAGTGGGGATATAACTTCACCCAGAGCAAGGGGG------------TATTAAGGACAGGAAAATTTGCCAAAGTAAGGTCAGTACACACTAATAGCTATCAGCAATTGGCAGACGCAATGGCCAAAATAGGAAGAGAAAGCCTAGTCATTTGGGGGAAGCCCCCTGACAAGGTCAGAATCCCAGTGATCAAAGAACAGTGGGACCAGTGGTGGATAGCACACTGGCAGGTCTCGTGGATACC---TACCATAGAAGCAGTGCATACCACCCACCTGTTAAAACAGTGGT---TCACATTGGTACCAGAACCATTA------AAAGAAGCTCCCACATATTATGTGGATGGAGCAGCAAATAGGGTATCCAAATTGGGAAAAGCAGGATACGTCACAAACACAGGGAAAGAAAAGGTAATTAGCCTAGAAAGTACTACCAACCAGAAAGCAGAATTGGAGGCAGTCTTATTGGCCTTAAAAGAA---GGGCCTCCTAGGATGAATTTAGTCACAGATTCTCAGTATGT------CTTAGGGATAGTAGCTTCTCAGCCACAAGAATCCACTTCACCATTAGTAGAGCAAATAATACAGGAGCTACTGTCAAAAGAAGCCATATACTTATCATGGGTGCCAGCCCATAAGGGTATAGGAGGAAATGAGGAAGTGGACAAATTAGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGT-GGAATCAG------GCAAGT------------------CCTATTCATGGAACAGATAGAACCTGCAAAG-GAAGATCATGA-AAAATATCACAGTAATTGGAAGTACCTCAGGGATAAATACCAAATCCCAGCTTTGTTAGCCAAAGAAATAGTAAACCATTGTCCAAAATGCCAGAC---------ACATGGAGAACCAAAAACAGGGCAAGTCAATGCAGAGATAGGGG--------TATGGCAAATGGATTGCACCCACCTGGAGGGAAAAATCATTCTAGTAGCAGTCCATGTGGCTAGTGGGTACATGTGGGCAAAGATATTGCCAAGAGAAACAGGGAGGCAGACAGCTTTAGGCCTACTGGAGTTAGCATCACTATGGCCTGCGACACAAATCCATACAGATAATGGGGCTAACTTCATCAGTGCAGAATTCGAAGCAGCATGCTGGTGGGCCAGCATAGAACATACCACAGGGGTACCATATAACCCTCAGAGTCAAGGAGTGGTAGAAAACAAAAACAAACAGTTAAAAGAAGCCATACACAAAATCAGGGAAGAGGTCACTTATTTGGAAACAGCAGTAGCACAAGCAGTCTTCATTTTAAATTTTAAAAAGAAGGGAGGAGTGGGGGACCTATCAAATGCTGAGAGGATAATCAACATGCTACACACAGAACTAGAACTACAACACTTACAACA---ACAAAAATACAAATTTCAAAA----TTTTCGGGTTTATTATAGGACAGGTTCTGATCCGTCT---------TGGAAGGGACCCGCCGTCTTACTGTGGAGAGGTGAAGGAG----CAGTAGTCATCAAAACAGACTCAGGAGAGGTAATCACAGTTCCTAGAAGAAAGGCAAAAATAATCAAACCCTATGGCG------CCAAGGA---------------AGATGTGGGTAGTAAGTCCGATACAGGAGACCTCAGAAAGGAAGATAGATTGGATAATTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Simian_Immunodeficiency_Virus_Red_Capped_Mangabey --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAATGCT---CCCTGGAAGCA---------GGGGAAACCGAGGAACCTTCCCTTGACT------------------TCCTTGAGACCTACTGCTCCAGGGAGAGAGGAAGGATGGAATCCC------------------------------------------------------CAGTACGATCCAGCAGAAGAGATGCTCAGGAA-------------------------ATACCTAGCATTGGGGAGACA-----GCACAAACAGGAGCAGAGGAAAGAGAACAAGGAGAAAGTGGGGAGAGCCTACGAG------------------------------------GATGCGTTGTCCTCCCTCAATTCTCTCTTTGGAAGCGACCTGTAACATGGGTAGAAATAGAGGGGCAAAAGGTGGAGGCCTTATTAGATACAGGAGCAGATGGTACAGTTATACAAAA------------TTTAGATTT---AGGAGAAAATTGGAAGCCAAAAATTATAGGAGGAATAGGGGGATATATAAATGTTAAACAATTTAACCATTGTAAAATAACTAT---------------AGCAGGGAAGACTACACATGCTCATGTATTGGTAGGAC---CAACACCAGTAA------ATATAATTGGCAGGAATGTGTTGAGCAAATTAGGAGCCTCTCTAA---ATTTTCC---------AATAAGTAAAGCAGAAACAATAAAGGTAGAATTAAAGCCAGGACAAGATGGGCCTAGAGTAAAACAAT-GGCCTTTGAGTAAAGAGAAAATTGAAGCTTTAACAGAGATTTGTAATGCCATGGAAAAGGAGGGAAAAATTTCTAGAATAGGACCAGAAAATCCTTACAATACTCCAATATTTTGTATCAAAAAGAAAGATTCCACAAAATGGAGAAAGCTAGTAGATTTCAGAGAATTGAATAAAAGAACACAAGATTTCTTTGAGGTACAGCTGGGAATCCCGCATCCAGGAGGATTAAAACAATGCAGGCAAATTACAGTCTTAGATATTGGGGATGCGTATTTTTCATGCCCCCT---ATATGAGCCATTTAGAAAGTACACTGCTTTCACGATACTAGCTATTAATAATCAAGGACCTGGCATTAGATATCAATATAATGTGTTGCCCCAGGGATGGAAGGGATCTCCAGCTATATTTCAAACAACAGCTAACAAAATTTTAGAACCATTTAGGAAAGAGAATCCA---GATGTAGTCATCTATCAGTATATGGATGATTTGTTTGTAGGGTCAGATAGGACAGCACATGAACATAGTCAGATGATCAAAAGGCTCAGAGAGCATCTGCTGACCTGGGGTTTTGAGACTCCAGATAAGAAATTTCAGGACAAGCCTCCCTTTGAATGGATGGGCTATGTGCTCCATCCAGACAAATGGACAGTACAAGAGATCAAGTTACTAGAAAAAGA------AGAATGGACAGTAAATGATATACAGAAATTGGTAGGGAAATTAAATTGGGCAAGTCAGATATATTCAGGAATAAAGACAAAGGAGTTATGCAAACTAATAAGGGGAGTTAAGGCATTGGATGACAAGGTAGAATTTACAAGAGAAGCAGAA---------------------------------------------------------------------------------------------------------------------------TTAGAATATGAAGAAAACAAAGCTGTCCTGAAGGAGAAAATACATGGGGTTTATTATAACCCAGAAAAACCATTAATAGCTAAAGTTCAGAAATTAGAAGGAGGGCAATGGAGCTACCAGATAGAGCAGGGAGACTCAAA---AC------CTCTAAAGACAGGGAAGTATGCAAAACAAAAGACAGCACATACAAATGAAATTAGAATGCTGGCAGGCTTAGTACAGAAAATATGCAAAGAAGCTATAGTAATTTGGGGAAAGCTTCC---AAAATTTGAGCTGCCAATAGAAAGAGAAGTATGGGAACAGTGGTGGTCGGATTACTGGCAGGTTTCCTGGATTCC---TGAATGGGAATTTGTTAGTACTCCACCACTAATAAGGCTATGGT---ACAATCTAGTAAAGGATCCTATA------CCAGGAGAAGAAGTCTATTATGTAGATGGGGCAGCAAATAGGAATAGTAAGTTGGGAAAGGCAGGATATGTAACAGATAGGGGAAAAGAAAAGGTAAAAGAATTAGAAAATACTACCAATCAAAAAGCAGAGTTAGGAGCAGTATTACTGGCCTTAAAAGAC---TCAGGAAAAAGGGTAAACATAGTAACAGATTCTCGACATGT------GTTTGGCATATTAGCAGGAAGTCCAGACACAAGTGAGAGCCCCCTAGTACAACAGATTATAGAACAAATGATAGGGAAGGAAGAAGTGTACCTCTCCTGGGTACCGGCACATAAAGGCATTGGGGGAAATGAGCAGGTAGATAAATTAGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAG-GGAATTAG------ACAGGT------------------ACTATTCCTAGACGGGATAGGAAAAGCACAG-GAAGAACATGA-AAAATATCATAGCAATTGGAGAGCAATGGCAGAAGAATTTCAAATACCTCAAATAGTAGCAAAAGAAATAGTAGCCCAATGCCCCAAGTGTCAGGT---------AAAAGGAGAAGCAGTACATGGACAGGTAGATGCTAGTCCAGGTA--------CTTGGCAAATGGATTGCACACATCTAGAAGGAAAAATCATCATAGTAGCAGTCCATGTAGCCAGTGGATACATAGAAGCAGAAGTAATACCAGCAGAGACAGGAAAAGAGACAGCTCATTTCCTGTTAAAATTAGCAGCCAGATGGCCAGTGAAACATTTACACACAGACAATGGAACAAACTTTACAAGTGCAGCAGTGCAAGCAGACTGTTGGTGGGCTCAAATAGAGCACACCTTTGGAGTACCCTACAATCCTCAAAGCCAAGGAGTGGTAGAATCAATGAATCATCAATTGAAGATAATAATAGGGCAAATTAGAGATCAGGCAGAAAAGTTAGAGACAGCAGTTCAAATGGCAGTGCTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGAGAAAGGATAATAGACATAATAGCATCAGACTTACAAACAACCAAATTACAAAA---CCAAATTTCAAAAATTCAAAA----TTTTCGGGTTTATTTCAGAGAAGGAAGGGATCAGCAG---------TGGAAGGGACCAGCTAAACTCATCTGGGAAGGAGAAGGGG----CTGTCGTGATCCAG---GATCAAGAGGATCTAAAGGTAGTCCCTAGAAGAAAGTGTAAGATCATAAAAGATTATGGCAGAAA------------------------AGAGGTGGATAGAGAGACCAATATGGAAGGTAGACAGGAGGAAAGTTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Simian_Immunodeficiency_Virus_Sooty_Mangabey -----------------------------------------------------------------------------------------------------------------------------ATGCCCCGAAAGACAGGCGGGTTTTTTAGGGCTTGGC---CCATGGGG------------AAAGAAGCCCCGCAATTTCCCCATGGCC------CAGATGCCTCAGGGGCTGACACCAACTGCTCC{CT}CCAGAGG------------------------------------------------------------------------------ATCCAGCTGTGGATCTACTGAAGAA-------------------------TTACATGAAGGTGGGCAGAAG-----GCAGAGGGAGAACAGAGAGAGACCTTACAAGGAGGTAACG---------------------------------------------------GAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGAAGACCAGTAGTCACTGCCTACATTGAAGAACAGCCCATAGAAGTATTATTAGATACAGGGGCTGATGATTCAATTGTAGCAGG------------GATAGAATT---GGGTCCAAATTATACCCCTAAAATAGTAGGAGGAATAGGAGGCTTCATTAACACCAAAGAATATAAAGATGTAAAAATAAAAGT---------------ATTAGGCAAAGTAATTAAGGGAACAATTATGACAGGAG---ATACCCCAATTA------ACATTTTTGGCAGAAATCTGCTAACAGCTATGGGCATGTCTCTAA---ATCTCCC---------CATAGCTAAGGTGGA{AG}CCTATAAAAGTAACACTAAAACCAGGAAAAGATGGACCAAAATTAAGACAGT-GGCCGCTATCGAAAGAAAAGATAATTGCATTAAGAGAAATCTGTGAAAAAATGGAGAAAGATGGCCAGTTAGAGG{AG}AGCTCCTCCAACCAATCCATATAACACCCCCACATTTGCTATAAAG{AG}AG{AG}AAGACGGAAATAAATGGAGGATGCTAATAGATTTTAGAGAATTAAACAAGGTCACTCAAGATTTTACAGAAGTACAGTTAGGGATACCACACCCT{AG}CAGGACTAGCAAAGAGAAGAAGGATCACAGTGTTGGATGTAGGTGATGCATATTTCTCCATACCTTT---AGATGAAGAATTCAGGCAATACACTGCCTTTACCTTACCATCGGTAAACAATGCAGAACCAGGAAAAAGATACATCTATAAGGTATTACCTCAAGGGTGGAAAGGATCACCAGCTATTTTTCA{AG}CATACT{AG}TGAGAAATGTATTAGAACCTTTTAGAAAAGCAAATCCA---GATGTGACCCTGATCCAATACATGGATGACATCTTAATAGCTAGTGATAGAACAGATTTAGAACATGACAGGGTAGTTTTACAATTAAAGGAACTTCTGAACAGTATAGGATTTTCCACCCCAGAAGAGAAGTTCCAAAAAGATCCCCCATTCCAGTGGATGGGATATGAATTGTGGCCCACCAAATGGAAACTGCAAAAAATAGAGTTGCCGCAAAGAGA------AACCTGGACAGTAAATAATATACAAAAATTAGTAGGAGTGCTAAATTGGGCAGCACAAATTTATCCAGGAATAAAGACTAAACATCTTTGCAGATTAATCAGAGGAAAAATGACTTTAACAGAAGAGGTTCAGTGGACTGAGATGGCAGAG---------------------------------------------------------------------------------------------------------------------------GCAGAATATGAAGAAAACAAGATAATTCCCAGTCAAGAACCAGAGGGATGTTACTATCAGGAGGGAAAGCCACTAGAGGCACCAGTAATAAAGAGTCAGGATAATCAATGGTCATATAAAATTCACCAAGAGGACAAAA------------TACTAAAAGTAGGCAAATTTGCAAAGATTAAAAATACACATACAAATGGAGTCAGCTTATTAGCACATGTAGTGCAGAAAATAGGAAAAGAAGCAATAATAATTTGGGGACAGGTGCC---AAGATTTCATTTGCCAGTAGAGA{AG}AGAAATTTGGGAACAATGGTGGACAGATTATTGGCAAGTAACCTGGATACC---AGAATGGGACTTTGTGTCAACACCTCCCTTAGTCAGACTAGTTT---TCAACCTAGTAAAAGAGCCTATA------CAGGGAGCAGAAACATTTTATGTAGATAGATCCTGTAATAGGCAGTCAAGAGAAGGAAAAGCAGGCTATGTGACAGATAGAGGCAGAGGCAAGACAAAACTGCTGGAACAGACTACCAATCAACAAGCAGAGTTGGAAGCCTTTTATCTAGCCTTAGCAGAT---TCAGGACCAAAAGCAAATATTATAGTAGATTCCCAATATGT------TATGGGCATAGTAGCAGGTCAACCCACTGAATCAGAAAGTAGATTAGTAAACCAGATAATAGAGAAAATGATTAAAAAGGAAGCAATTTATGTAGCATGGGTACCTGCACATAAA{AG}{AG}AATAGGAGAAAATCAAGAAGTAGATCATCTAGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAA-GAAATTAG------ACAAGT------------------CCTATTCTTAGAAAAAATAGAACCAGCGCAG-GAAGAGCATGA-AAAATACCATAGCAATGTAAAAAAATTGGTATTCAAATTT{AG}GTTTACCTAGGCTAGTAGCAAAACAAATAGTAGACACATGTGATAAATGCCACCT---------GAAAGGAGAAGC{CT}ATACATGGGCAAGTAAATGC{AG}G{AG}ACTAGGGA--------CTTGGCAAATGGACTGTACACACCTAGAGGGCAAAATAATTATAGTTGCAGTACATGTGGGTAGTGGATTCATAGAGGCAGAAGTAATCCCGC{AG}GGAAACAGGAAGACAAACAGCACTGTTTCTGCTAAAATTAGCCAGCAGATGGCCCATCACACATCTGCATACTGATAATGGTGCCAATTTCACATCACAAGAAGTGAAAATGGTTGCTTGGTGGGCAGG{AG}ATTGAACAGACCTTT{AG}GGGTACCTTATAATCCACAGAGCCAA{AG}GGGTAGTGGAAGCGATGAACCATCATCTAAAAACCCAAATAGATAGAATTAGAGAACAGGCAAATTCAATAGAAACTATAGTACTAATGGCAATTCATTGCATCAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAGTCAATATGATTACCACAGAACAAGAAATACAATTCCAACAATC---AAAAAATTCAAAATTTAAAAA----TTTTCGGGTCTATTACAGAGAAGGCAGAGACCAGCTG---------TGGAAAGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAG----CAGTCATCCTAAAG---GTAGGGACAGAGATCAAGGTAGTACCAAGGAGGAAAGCTAAAATTATCAAAGACTATGGAGGAGGAAA---------------------AGAATTGGATAGTGGTTCCCACTTGGAGGATACCGGGGAGGCTAGAGAAGTGGCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG Simian_Immunodeficiency_Virus_Sun_Tailed_Monkey -----------------------------------------------------------------------------------------------------------------ACAAGCTCAATGCCCACAAGGAAAACAGGTGAATTTTTTAGGGTATGGC---CCCTGGAACAG---------GGGGCCGCCAGGGAACTTTCCAGTCATGCCTTCTGCTCCGCCTCTAGAGGATCTGACATTGGGGAACAGAATGACACCACCCCAGTCAAAGGCAGAGAGAGCTCTGGAG---------------------------------------------------------------------------------------------ACCTACAGACTGTTAGGACAGGGCCTCAGAGCACAGCAGAAGAGGAAGGAAAGGGGGGAA---------------------------------------------------------TGTCAGGAGCCATGCTTGAATATGCTCTTTCCAGAAGACCCTTAGAGAAGGTCTTCATTAATGGGCAACCTGTGACTGCTTTATTGGACACGGGAGCAGATGACACAATAGTGTCTGAAGATTC------TGTGTCCAT---AGAAGGTCACTGGAAGCCCAGGGTAGTGGGTGGTATAGGGGGACAAATTAGAGTAAAAGAATATGCAGATGTCTTTGTAGAAAT---------------TAGGGATAAAACAGCTACAGGAACAGTGTTGGTGGGGC---CAACACCAGTAG------ATATCATAGGGAGAAATATTCTTTCAGCCTTAGGGGGAAGATTAG---TTTTAGCCACTCT---TAGTGAAAAGATCCCAATTACAAAAGTTAAGTTAAAAGAAGGGGCCGCTGGACCAAAAGTGAAACAAT-GGCCCCTGTCAAGGGAGAAAATAGAAGGCCTACAGAAAATTTGTGATAGATTGGAAGCAGAAGGAAAGATTAGCAGGGCAGACCCAGGGAACCCTTATAACACACCAATTTTTGCTATAAAGAAGAAAGACAAAAATGAATGGAGAAAGTTAATAGATTTTAGAGTACTAAATGGTATGACTCAAGACTTTCATGAGTTACAGTTAGGGATTCCTCATCCAGCAGGATTAAAGAAGTGTAAACAGATTACAGTAGTAGATGTGGGGGATGCATACTTCTCAATACCATT---GGATCCAGATTATAGAAAGTATACAGCATTCACAATACCGTCAGTAAATAATCAGGCACCAGGAAAAAGATATGTGTATAATGTCCTACCACAGGGCTGGAAAGGAAGTCCTTGCATCTTTCAGGGAACGGTAGCGAGCCTCTTAGAGAAATTTAGAAGACAGTATCCA---GAAGTTCAATTGTACCAATACATGGATGATTTACTCATAGGATCTGATTATGAGAAAAAGAAGCATGAAGAAATAGTGAAACAATTGAGGCAGCTACTCATGGAATGGAATTTAGAAACACCAGAGAAAAAATATCAGGGAGAGCCACCCTATAAGTGGATGGGGTACATATTACACCCAGACAGATGGGAGATAGAGAAGATAAAATTACCCCCTCTAGA---AGAAGAGCCAACAGTGAATGACATACAGAAAATTGTAGGAGTTATCAATTGGGCTTCACAATTATATGAAGGGCTCAGAACAAAAGAATTATGTAAACTAATTAGAGGGAATAAACCATTAGCAGAGAAAGTAAAGATGACAGAAGAAGCTAGG---------------------------------------------------------------------------------------------------------------------------GAAGAATACCAGAGTAATCAGGAGGTATTACAGGAGTCAGTATCAGGCAGTTACTATGAACCAGATAAAGAATTAATTTGCAGAGTGCAAAAGGTAAAGCAAGGAATATTAACCTTTCAATGGTTGCAGGGAAAACAAG------------TATTAAGGGTAGGAAGATATCAAAAGAGAGGGGCAGCACATGAGAATCCTTGTCAACAGTTAGCAGCTGCCCTACAAAAGATAGGAAGAGAAAGCATAGTTATATGGGGATTTGTGCC---AAAGATACAGGTACCCATACAAAGAGAGATATGGAGTCAGTGGTGGGCAGACTACTGGCAGTGTACATGGATCCC---TGAGTTAGAATTTGTCAGCACTCCTAAGTTGGAGCAAGAGTGGT---ATACTCTAGCCACAGAACCAGTG------CCAGGAG---ACACCTACTATGTGGATGGAGCAGCTGAAAAGCTAGAAAAGAGAGGGAAAGCAGGATATATAACCCAGGGAGGAAGATCCAGAGTTAAGAAATTGGAAAACACCACCAATCAGCAAGCAGAACTAGAGGCTATAAAAATGGCCTTGGAGGAT---AGTAGGAGCTCAGTTAATATAGTAACAGACTCACAGTATGC------CTTAAGACTGCTCAGTAAGAGACCCACAGAAACAGATTCAGAGCTAGTAAAGGAGATCGTAGAGCTCATAAGGCAAAAGGACCAGGTATACCTAGGTTGGGTACCGGCACACAAAGGAATAGGAGGAAATCAAGAAATAGATCAACTAGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAG-GGAATCAGAAAGAGACAGGT------------------AATGTTTATAGAAAAGATAGAACCAGCTGTA-GAAGAACATGG-GAAGTTCCATAACAATGCAGCCTCTTTGCAGGAGATGTTTGACATACCCCTAGTGGTAGCAAAGCAGATAGTCAATGAATGTGCACAATGTCAACA---------GAAAGGGGAAGCCATAACAGGACAAGTAGATGCCTCAGTGGGCA--------TCTGGCAGATAGATTGCACCCACATGGAAGAAAAAGTCATAATAGTAGCGGTGCATGTGGCTTCAGGGTATATGGTAGCAGAAGTACTACCCAATGAGCAAGGGAAGACAACAGCCACTTGGCTGTTAAAGCTCTGTGCCATGTGGCCAGTAAAACAGATACATACAGATAATGGGCCAAATTTCATCAGTAAAGATGTGGAGGCAGTATGTTGGTGGTTAGGCATACAGCATACAACAGGGATACCTTACAACCCTCAGAGTCAAGGAGTAGTGGAAGCAAAGAACAAGGTATTAAAACAAATTATCAGCAGAATTAGAGAAGATGCACAGGAATTGAAAACTGCAGTACTCATGGCTCTGCACATTCATAATTTTAAACAAAGGGGAGGACTAGGGGGAATGACAGCAGCAGAGAGGTTTATCAACATGATTAATGCAGATCTAGAAACACAATACTTACAGAA---AATAAATTCAAAAATTTTAAA----ATTTAAGGTCTACTACAGAGAAGGAAGAGATCCTCAG---------TGGAAAGGACCTGCTAAACTTCTGTGGAAAGGGGAAGGAG----CAGTAGTCATCAAA---CAGGGTGAGAACATCCTGGTAGTACCTAGGAGAAAAGCAAAACTAGTAAAGGACTATGGAGGAGAATCCTCCT----------------CAGTGGAGATGGTGGGATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Simian Immunodeficiency Virus Syke''s Monkey' -------------------------------------------------------------------------------------------------------------------------------------------ATGGGGGGTCTCCAG-------------------------------GAGGCCCCCAGCCAACTTCCCAGTGAGG---------------------AGCGAGCCATCTGCTCCCCCTCTGGAGG---------------------------------------ACATCGAAGATGGGCCATGGCTCACATGGTCAGCACAGATGAGCCAACAAGCACAAGCGAAGGCACAGAACTCTCCCTCGAAGAAACCCCCCACCAACAGGGAAGTGCTCTCGCCGAAGGAGAGCAGTGGGAAGGAGGAGACCAAG---------------------------------------------------------AGTCTCTATCCCTCTCTCAGCTCTCTCTTTGGAGAAGACCAATGATAGAAGTAGATGTAGAAGGTGACCTGGTGCAAATGTTAGTAGATACAGGGGCAGATGATACTATAATTAGAGAAGAAGA------TATTCAATT---ACACCAACCATGGTCACCAAAAATAGTAGGAGGATTAGGAGGAAACATTACAGTTAGGCAATATAGAAATATTAGATTCACTGTTGTTAAACCCTCAGGAAAAAGAAAGCAAGTAGAGGGGACTCTTTTAGTGGGTC---CTACGCCAGTAA------ATATATTAGGAAGGAATATACTTACCAAATTGGGAGTCAAATTAG---TAATGGTTC---------AAACAGCATTAGAGCCAGTCAAAGTAAGTCTGAAACCAGACAAAGAATTGCCCCGGCTAAAACAAT-GGCCATTATCGGTAGAGAAATTAGAGGCCCTCAAGGCAATAGTAGAAGACATGCTCAAGGCAGGACAATTGGAGAAAGCTAGTCCTACCAATCCTTATAATACCCCAGTATTTGTAATTAGGAAAAAGGACAAAAAGAAATGGAGGATGCTCATTGATTTTAGAAAATTAAATGAGGCCACACAAGATTTTTTCGAGGTACAATTGGGAATACCCCACCCAGGAGGACTAAAACGGCAAAAAC---TAACAATTATAGATTTAAAAGATGCATATTACTCAGTCCCCCT---GGACAAAGAGTTTAGGCCATACACGGCATTTACAGTGCCAAGCATAAATAATGCCTCCCCGGGAGAAAGATATCAATTTACAGTGTTACCACAGGGATGGAAAGGATCTCCCACTATCTTCCAAAGCACAATAAATCAGATACTACAGCCATTTAGAAAGAAGTATTCA---GATCTCACTCTAATACAGTACATGGATGACTTATTGATTGGCACTGATAGATCAGAGAAGGCACATCAGGAGATAGTACAACAAATAGTGACAGCACTATTAAAAGTGGGATTTAAGGTCCCAAAAGAAAAATGGCAGGACCAATATCCAATGCAGTGGTTAGGTTACACTCTTCATCCAGACAAGTGGCAGTTGCAGAAAATAGAACTCCCTAATATAGA---TGACGAAATCACAGTGAATCAGTTACAGAAATTGATAGGAGTACTTAATTGGGCAAGCCAGATTTATTCAGGAATTAAGACAAAAGAGCTCTGTAAGTGTATCAGAGGAACTAAACAATTAACAGAAGTACTCACACTTACAGAAGCAGCTGAG---------------------------------------------------------------------------------------------------------------------------GCAGAATTAGAAGAGAATAGACAAATCTTAAAGGAAGAACAGGCAGGGTCTTATTATGACCCTAAAAAACCTTTAGAAGCACACATCACTAAACTAGGGTCCCAGCAATGGGGATACATGATTAAGCAAGAGCAAAAAGGCCCAC------CCCTAATAACAGGAAAGACAGCAAAAACCTTTGCAGCACATAGTAATGACTATCAATCTCTTGCTCAATTGTTAAATAAAATAGGGATCCAATCACTATGGTATTGGGGAAAGGTACC---AACATTCCATCTCCCAGTAAAAAGAGAGGAATGGGAAAAATGGTGGACAGACTATTGGCAAGCCACATGGGTACC---AGAAGTCAAATTCATAAGTACCCCGCCATTGGTTAGGTGGTACT---ATAACTTGGTACCAGAACCCATA------CCAGAAGCAGTAACCTTCTACGTAGATGGAGCAGCTAATAGAGACAGCAAGACAGGAAATGCAGGATATGTAGCAAGTGATGGGACACAGAGAGTACAGTATCTGGAGCAAACAACAAACCAACAGGCAGAATTAGAGGGCTTGCTCATGGCATTGCAGGAC---TCAAAAGACAAAGTAAATATAGTAGTAGATTCACAATACTC------TTATGGCATTCTTATGACATGCCCCACTAACACAGAACACCCAATAGTGGAGCAGATAATACAAGAGGCCATAAAAAAGGAAGCCATATATGTGACATGGGTCCCAGCCCATAAAGGAATAGGAGGAAATGAAGCTGTTGATAAACTAGTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAA-GGAATAAG------AAAAAT------------------CCTATTCCTAGAAAGAATTCCCCAAGCACAG-GAAGATCATGA-AAGGTACCACTCAAATATGGAGTATCTTAGGCAGGAGTTTCATCTACCCCGACAGGTAGCAAAAGCAATTATACAACAATGTCCAAAATGTCAAAA---------TAGAGGAGAACCAAAACATGGGCAAGTAGATGTAGATATATATA--------ATTGGCAGATGGACTGTACTCATGAGGAAGGCAAAGTAATCTGTGTAGCAGTAAACACAGCTAGTGGATATATAGAAACCAAGATCTTAAAAAGGGAAACGGGGGATGAAACAGCATTGTTTCTCATGCAAATAGCCAGTAGATGGCCAATAAAACAGATACACACTGATAATGGACCAAACTTTGTCAGTGACAAGTTCAAAGCAGCATGTTGGTGGTGTGGCATAGAACACACTACAGGTATTCCATACAACCCACAAAGCCAGGGAATAGTAGAGTCCAAAAATAGGTATTTAAAAGAAGCTATCTCACAAATTAGAGACGACGTCACACATTTGCAAACAGCAGTGGCAATGGCAACCTTCATCTTAAATTTTAAAAGAAAGGGAGGAATAGGGGGGATATCACCAGGAGAAAGGTACATTAATATGCTATATACAGAACTACAATTACAACA---AAATAC---AACATCACCAAAATTTTCGAA----TTTTAGGGTTTACTACCGCCAGGGGAAGAAC---GAG---------TGGAAGGGACCAGCTCGTCTACTTTGGAAAGGTGAAGGTG----CAGTAGTGGTGCAAACAGAGGAGGGAGACATTTTTGCAGTACCAAGAAGAAAGGCAAAAATAATTACAGACCATG---GAGA------------------------AAGAATGGATAGTGGTTCCCACGTGGAGAATGACCCCAAGACAGATTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ; END; [ The following blocks are output data for analysis step 13770 ] BEGIN TREES; TITLE Endogenous_lentiviruses; LINK TAXA = TaxaForAnalysisStep13770; TREE pSIVmb = [&R] (Equine_Infectious_Anemia_Virus_Strain_Liaoning:0.13305,Equine_Infectious_Anemia_Virus:0.10046,((RELIK_Brown_Hare:0.04224,RELIK_European_Rabbit:0.0)1.00:0.72218,(((Bovine_Immunodeficiency_Virus:0.45486,Jembrana_Disease_Virus:0.09068)1.00:0.88389,(Caprine_Arthritis_Encephalitis_Virus:0.18956,(Ovine_Lentivirus:0.11576,'Maedi-Visna Virus':0.12551)0.98:0.07309)1.00:0.75206)0.99:0.19999,((Feline_Immunodeficiency_Virus_Puma_Subtype_B:0.3565,(((Feline_Immunodeficiency_Virus_Domestic_Cat_San_Diego_Isolate:0.09338,Feline_Immunodeficiency_Virus_Domestic_Cat_Subtype_C:0.09624)1.00:0.21472,'Feline Immunodeficiency Virus Palla''s Cat':0.15833)0.50:0.04733,Feline_Immunodeficiency_Virus_Puma_Subtype_A:0.36557)0.83:0.08002)1.00:0.30311,((Prosimian_Immunodeficiency_Virus_Fat_Tailed_Dwarf_Lemur:0.01441,(Prosimian_Immunodeficiency_Virus_Mohol_Bushbaby:0.00219,Prosimian_Immunodeficiency_Virus_Gray_Mouse_Lemur:0.00104)1.00:0.02609)1.00:0.77549,((((((('Simian Immunodeficiency Virus Dent''s Mona':0.35078,'Simian Immunodeficiency Virus De Brazza''s Monkey':0.3414)0.93:0.06444,(Simian_Immunodeficiency_Virus_Angolan_Talapoin:0.40525,((Simian_Immunodeficiency_Virus_Mona_Monkey:0.27492,(Simian_Immunodeficiency_Virus_Mustached_Guenon:0.24246,Simian_Immunodeficiency_Virus__Greater_Spot_Nosed_Monkey:0.23113)0.99:0.07779)0.98:0.12506,Simian_Immunodeficiency_Virus_Gabon_Talapoin:0.45506)0.00:0.00803)0.74:0.03909)0.67:0.04407,'Simian Immunodeficiency Virus Syke''s Monkey':0.4637)1.00:0.09081,((Simian_Immunodeficiency_Virus_Sooty_Mangabey:0.1441,Human_Immunodeficiency_Virus_2:0.12524)1.00:0.27471,(Simian_Immunodeficiency_Virus__African_Green_Monkey_Grivet:0.22524,((Human_Immunodeficiency_Virus_1_Group_O:0.20661,(Human_Immunodeficiency_Virus_1_Group_M:0.17116,Simian_Immunodeficiency_Virus_Chimpanzee:0.13616)1.00:0.07684)1.00:0.17359,((Simian_Immunodeficiency_Virus_Mandrill:0.15349,Simian_Immunodeficiency_Virus_Drill:0.15419)1.00:0.09994,Simian_Immunodeficiency_Virus_Red_Capped_Mangabey:0.19079)0.99:0.06176)0.98:0.06371)0.98:0.0776)0.96:0.04727)0.60:0.04493,Simian_Immunodeficiency_Virus_African_Green_Monkey_Tantalus:0.34552)0.86:0.05131,Simian_Immunodeficiency_Virus_Mantled_Guereza:0.62675)0.78:0.06581,('Simian Immunodeficiency Virus L''hoests Monkey':0.20019,Simian_Immunodeficiency_Virus_Sun_Tailed_Monkey:0.26252)1.00:0.20267)1.00:0.47802)0.63:0.11246)0.89:0.07593)0.97:0.1042)1.00:0.90866); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr75128] END;