#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 21, 2025; 4:32 GMT TreeBASE (cc) 1994-2008 Study reference: Sandoval-leiva P. 2014. Vibrisseaceous fungi from the southern hemisphere, including Chlorovibrissea chilensis (Helotiales, incertae sedis) sp. nov. Mycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15893] [ The following blocks are input data for analysis step 13840 ] BEGIN TAXA; TITLE TaxaForAnalysisStep13840; DIMENSIONS NTAX=33; TAXLABELS Ascocoryne_cylichnium_AY789395 Ascocoryne_sarcoides_AY789388 Bisporella_sp_AY789326 Chlorociboria_aerugin_AY755360 Chloroscypha_chloromela_U92311 Chlorovibrissea_chilensis_PDD99891 Chlorovibrissea_phialophora_PDD83226 Chlorovibrissea_sp_DQ257353 Cholovibrissea_bicolor_AU9671 Cudoniella_clavus_AY789374 Cudoniella_sp_AY789342 Hyaloscypha_daedaleae_AY789416 Hydrocina_chaetocladi_AY789413 Hymenoscyphus_scutula_AY789432 Hyphodiscus_hymeniophilus_AB546951 Lachnellula_calyciformis_U59145 Lachnum_bicolor_LBU59005 Lachnum_clandestinum_U58636 Lachnum_virgineum_LVU59004 Mitrula_brevispora_AY789294 Mitrula_paludosa_AY789424 Mollisia_cinerea_DQ491498 Myxotrichum_deflexum_AF062814 Ombrophila_violacea_AY789366 Phialocephala_fortini_AY347413 Sclerotinia_sclerotio_AF455526 Vibrissea__albofusca_PDD88457 Vibrissea_albofusca_AY789384 Vibrissea_flavovirens_AY789427 Vibrissea_sp_D772 Vibrissea_sp_PDD99892 Vibrissea_sp_PDD99893 Vibrissea_truncorum_EU434855 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M22765] TITLE Chlorovibrissea; LINK TAXA = TaxaForAnalysisStep13840; DIMENSIONS NCHAR=600; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ascocoryne_cylichnium_AY789395 CCTACCGCAGCAGCAGGCC---CGCCTGCTGC---TCGACGACCACGGCCCCCTC--CCCAGGGGGTACCCCCCAACCCTTGCGAAC-TATACCTT--TGTTGCTTTGGCGGGCCGCATCG--CG-----CCACCGGC-GTCCGCTGGTGAGTGCCCGCCAGAGGCCCC----AACTCTTGATTTTA--TAGCGTCTGAGTACTATCT--AA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGCATTCCGCGGGGCATGCCTGTTCGAGCGTCATTATGACCAA-ATCACGCCAG---GCGTGGTCTTGGGGCTGGCAGCT-C---TGCCGCCCTCAAACGCAGTGGCAGCGCCGG-GTGGCTCTTAGCGTAGTAATACTCCCC----GCTATAGGGTCC-GC-CGGTCGCCTGCCA-GCAACCCCCCAATCTTT-CTAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAA----------- Ascocoryne_sarcoides_AY789388 CCTACCGTGGCAGCGGGCT---CGCCCGCTGC---TCGACGATCACGGCCCCCTT--CACGGGGGGTACCCCTCA-CCCTTGTGTAT-TATACCTT--TGTTGCTTTGGCGGGCCGCGTCA--AG-----CCACCGGC-TCACGCTGGTGAGTGCCCGCCAGAGGCCCC----AACTCTTGATTTTA--TGATGTCTGAGTACTATAT--AA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTATGACCAACATCACGCCTC---GCGTGGTCTTGGGGCTGGCAACT-C---TGCCGCCCTCAAACGCAGTGGCAGCGCCGC-GTGGCTCTTAGCGTAGTAATACTCCTC----GCTATAGGGTCCTAC-GGGTTGCCCGCCA-GCAACCCCC-AATCTTT-ACAGGTTGACCT--------------------------------------------------- Bisporella_sp_AY789326 -----GGG-TGAACCTGCGGAAGGATCATTAT-----AGAGTTC-ATGCCCTCG------CGGGTAGACCTCCC-ACCC-TTTGTATTTTAACC-AA-CGTTGCTTTGGCGGGCCGC---CCCTG----GGCCGCCGGCTTCGGCCGGCGCGTGCCCGCCAACAGACCCTCCCAACCCTGAATGTAT-GTGTCGTCTGAGTA--CTATGTAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCC---TCAAGCTCT---GCTTGGTCTTGGGCCCTGCCGGCAAC--GGCGGGCCTCAAAAACAGTGGCGGCGCCATC-GTGCTCTCAGCGTAGTAATTCTTCTC----GCTGTTGGGCCCCGG-TGGCGGCTGGCCA-GCAACCCCCAATTTTCT--ATGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCCGAG-- Chlorociboria_aerugin_AY755360 ------------ACCTGCGGAGGGATCATTAC-----TGAGCTC-ATGCCCTGC------GGGGTAGATCTCCC-ACCCGTGACATCTCACACC-TG-TGTTGCTTTGGCGGGCCGCGAGCCCC-------CCGCTG---CCGGGAGGCAGGTGCCCGCCAGAGGCCC----AAATCCAGTGCTCAGTATGTCGTCCGAGTAACCAATACAAATAGTTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGCATTCCGTAGGGCATGCCTGTTCGAGCGTCATAACAACCC---TCAAGCTCT---GCTTGGTCTTGGGCCTCGCCGCTC----GGCGGGCCTCAAACACAGTGGCGGTGCTTCC-AGGCTCTGAGCGTAGTACAT-CTCCC----GCTACAGCTGCCTGG-AGGTTACCAGCCA-GCAACCCCTATTTC-TC--TAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT---------- Chloroscypha_chloromela_U92311 TACAAAAGGAGAAGACTCCTATGTACAATCAC------GACCCCCCATCCGGGTAATGCTGATGGGGGCGACCTGATCACCCTGTGTCTACCTACTATCGTTGCTTTGGCGGGCT-------------------------------------CGCCCGCCAGAGGACCCC--AACTCTTGAATTATG---ATTGTCTGATTA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTATGACCAA--TCACGCCC---GGCGTGGTCTTGGGGCTGGCAGCGCT----GCCTCCCTTAAACCCAGTGGCGGCGCCGC-GTGGCTCTCAGCGTAGTAATACTTCC-----GCTAGAGACGTCCCG-CGGTCGCCCGCCA--GAACCCCCAACCATTC-AAAGGTTGACCT--------------------------------------------------- Chlorovibrissea_chilensis_PDD99891 TCCGTAGG-TGAACCTGCGGAAGGATCATTAA-----AAGACAA---GCGGGCA------ACCGCGAAGTCCATAACCC-TTTGTTTACTTATAT---TGTTGCTTCAGCGGGCTGCTGGC-CTCG{CG}C--AGCGCCGGCCTCGGCCGGACCGTGCCCGCTCGAGG-ACTCC-AAACTCTGAATGTTA-GTATTGTCTGAGTA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTATCACCAC--TCCAGCC---{AT}GGCTGGGTCTTGGGCACCGCCGGCA----GGCGGGCCTTAAACGTAGTGGCGGTGCTGC-CAGGCTCTAAGCGTAGTAATTC-TCTC----GCTATAGGGTCCTGG-GAGAGGCTGGCCA-TCAACCCCCAATTTTTA--CAGGTTGACCTCGGATCAGGTAGGGATACCC------------------------------- Chlorovibrissea_phialophora_PDD83226 --------------CTGCGGAAGGATCATTAT-----CGAGACA---GTGGGCA------ACCGCATATCTCC--ACCCTTGCATATATATCTAT-----TTGCTTTAGTGGGCTGTCAGG---CTCC--TGACCCGGCGACCGCCGG-TCGTGCCCGCTAGAGGGACCCC-AACTTCTGAATTAT--GTGGTGTCTGAGTA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCGTGGCATTCCGCGGGGCATGCCTGTTCGAGCGTCATTATAACCCC--TCTAGCC---TCGCTAGGTCTTGGGCTCCGCCGTCT----GGCGGGCCTTAAATGTCGTGGCGGTCCTAT-CAGGCTCTCAGCGTAGTATATC-TGTC----GCTATAGGGTCCTGG-GAGTGACTAGCCA-ACAACCCCCTTTTTTT---CAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCA------------ Chlorovibrissea_sp_DQ257353 TCCGTAGG-TGAACCTGCGGAAGGATCATTAC-----CGAGACA---GCGGGCA------ACCGCACATCTCC--ACCCTTGAATATACATATATA--TGTTGCTTTAGCGGGCCGTTAGGGCCTTCC--TAGCCCGGCTCCGGCCGG-TCGTGCCCGCTGAAGACACCCC-CAACCCTGAATTTTA-GTGTCGTCTGAGTA--CTATCTAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGCATTCCGCGGGGCATGCCTGTTCGAGCGTCATTACAACCAC--TCCAGCCC--TCGCTGGGTCTTGGGCCCCGCCAGCT----GGCGGGCCTTAAATGCCGTGGCGGTCCTGC-CAGGCTCTTAGCGTAGTACTGC-TCTC----GCTATAGGGTCCTGG-GAGCGGCTGGCCA-ACAACCCCAATTCTTT---CAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAA-------- Cholovibrissea_bicolor_AU9671 -------------------------TCATTAT-----CGAGACA---GTGGGCA------ACCGCATATCTCC--ACCCTTGAATATATATTTAT-----TTGCTTTAGCGGGCCGTCAGG---CTCC--TGACCCGGTGACGGCCGG-TCGTGCCCGCTAGAGGGACCCT-AACTTCTGAATTAT--TTGGCGTCTGAGTA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTATAACCAC--TCCAGCC---TCGCTGGGTCTTGGGCTCCGCCGTTT----GGCGGGCCTTAAACGTCGTGGCGGTCCTGT-CAGGCTCTAAGCGTAGTACATC-TGTC----GCTATAGGGCCCTGG-GAGCGGCTGGCCA-ACAACCCCCTTTTTTT---CAGG---------------------------------------------------------- Cudoniella_clavus_AY789374 ----------GAACCT-CGGAAGGATCATTAC-----AGTGTTCCCTGCCCTCA------CGGGTAGAAACGCC-ACCCTTGTATATATTATCT----TGTTGCTTTGGCGGGCCGC---CTTTA-----GGCACTGGCTTCGGCTGGCTCGCGCCCGCCAGAGAACCCC--AAACTCTAAATGTTA-GTGTCGTCTGAGTA--CTATCTAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTAAACCAA--TCCAGCAT----GCTGGGTCTTGG-GCCTTCGCCTCTGG--GCGGGCCTCAAAATCAGTGGCGGTGCCAC-CTGGCTCTACGCGTAGTAATTCTTCTC----GCGATGGAGTCCCAGGTGGAAGCTTGCCA-ACAACCCCAAATTCTTTTAAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGC------ Cudoniella_sp_AY789342 -------------CCTGCGGAAGGATCATTAC-----TGTGTTCACTGCCCTGA------TGGGTAGAAACGCC-ACCCTTGTGTATATTATCA----TGTTGCTTTGGTAGGCCGC---CTTTG-----GGCACCGGCTTCGGCGGGATCGCGCCTGCCAGAGGACCCC--AAACTCTGATTGTCA-GTGTCGTCTGAGTA--CTATACAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTTAAACCAA--TCCAGCCT----GCTGGGTCTTGG-GCTCTCGCCTTAGG--GCGGGCCTTAAAATCAGTGGCGGCGCCTC-CCGGCTCTACGCGTAGTAATTCTTCTC----GCGATGGGGTCCCGGGTGGTCGCTGGCCA-GCAACCCCCAATTCTT--AAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAA----------- Hyaloscypha_daedaleae_AY789416 GCGGAAGGATCATTATTGAAAAAGA-TAAGAC---GCCCCGTTTTT-TCGTAAAA----TGGGTTCAATACCCACAACCGTGTATACCTTACCTT---TGTTGCTTTGGCAGGCCGC--CTCCGG-------GCGTTGGCTTCGGCTGACAGCGCCTGCCAGGGGACC----CAAACTCTGTGTTTA-GTGATGTCTGAGTA--ACATAAAA-TATTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGTAACCAC--TCAAGCCT---AGCTTGGTATTGGGGTTCGCGTGCTC----GCGGCCCTTAAAATCAGTGGCGGTGCCG-TCTGGCTCTAAGCGTAGTAATTCT-CTC----GCTATTGAGTCCGGG-TGGTTGCCTGCCA-AAACCCCC------------------------------------------------------------------------- Hydrocina_chaetocladi_AY789413 TCGTCCGCGGCGCCCTGCAGTGTTTTTGGTGC---TCGCGTCCCGCGTCTCGCGG--TGACGCCAGTCACACTCACACCCTATGTCTACGTACCTT--TGTTGCTTTGGTGGGCCGCGGCCTCCG-----CTGCGGGCCTCGCGCTCGCACGTGCCCGCCAGAGAACCC----AACTCTTGATTTTA-GTGATGTCTGAGTACTATATTTAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTCCGGCGGGCATGCCTGTTCGAGCGTCATTATGACCAA-CTCACGCTCT---GCGTGGTCCTGGGGTCCGCTGTCAC---GGCGGCCCTTAAACCCAGTGGCGGTGCCGT-GCGGCTCTCAGCGTAGTAACTTATCTC----GCTACAGGGTCCGTC-CGGT-GTTGGCCA-GCAACCCCA-ACTATTT-CTAGGTTGACCTCGGATCAAGTAGGGATACCCGCTGAACTTAAGCATATCAATAA-------- Hymenoscyphus_scutula_AY789432 TCCGTAGG-TGAACCTGCGGAAGGATCATTAC-----AGAGTTC-CTGCCCTCA------CGGGTAGAAACCCC-ACCCTTGTATATAATATAT----TGTTGCTTTGGCAGGCCGC---CTCAC-----GGCGTCGGCTCACGCTGGCTCGTGCCTGCCAGAGGACCCT--AAACTCTGAAATACA-GTGTCGTCTGAGTA--CTATTTAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTTTGACCAA-CTCCTACCTC--GGTAGGGTCTTGG-GCT-TCGCCTCCGG--GCGGGCCTTAAAACCAGTGGCGGTGCCTT-GAGGCTCTACGCGTAGTAATTCTTCTC----GCGATAGGGTCCTCG-TGGTGACTTGCCA-GCAACCCCCAACTTCT--TAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGC------ Hyphodiscus_hymeniophilus_AB546951 TCCGTAGG-TGAACCTGCGGAGGGATCATTAC-----AGAGTTC-GTGCCCTCC------TGGGTAGATCTCCC-ACCC-TGTGTTGTCAGTAC-CA-TGTTGCTTTGGCGGGACGCGAGGCACGCCTC--CCACCGGCTCCGGCTGGTGTGCGCCCGCCAGAGGACCC--CAAACCCTGAATATGTAGTGTCGTCTGAGTA--CCATACAA-TCGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATGACAACCC---TCAAGCCTG---GCTTGGTGTTGGGCCTCGCCATTCACCCGGCGGGCCCTAAAACGAGTGGCGGTGCCGTCGCGGCCCTGAGCGTAGTACACATCCTC----GCTATAGGGACCCGG-TGGTCGCTGGCCA-GCAACCCCCAACTT-CT--AAGTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCA------------ Lachnellula_calyciformis_U59145 -------------------------TCATTAC-----AGAGTTC-ATGCCCTCA------CGGGTAGATCTCCC-ACCCTTGTATA-TATAATTATC-TGTTGCTTTGGCGGGCCGCGAGCCTAG-----CTTGCCCGGGTTCTGCCCGGCGTGCCCGCCAGAGGAAACCT-AAACTCTGAATGTTA-GTGTCGTCTGAGTA--CTATATAA-TAGTTAAAA-CTTCCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCAA--TCCAGCCT---GGCTGGGTCTTGG-GCCTCG--CGGTACAGG-GGGCCTTAAAAACAGTGGCGGTGCTCT-CATGCTCTACGCGTAGTAACTT-TCTC----GCTATAGGGTCCTGG-GAGATGCTTGCCA-ACAACCCCCAATTTTTTTTTAGGTTGACCTCGG------------------------------------------------ Lachnum_bicolor_LBU59005 TCCGTAGG-TGAACCTGCGGAAGGATCATTAC-----AGAGTTC-ATGCCCTTC------GGGGTAGATCTGCC-AACCTT---TATCATCATTAAG-TGTTGCTTTG?CGAATCGAGGCCTTCA-----CCCCG------GGGCCCCTCTGTATTCTCCAGAGGAT??C--A?ATTCTGCA--TT?-ATGTCGTCTGAGTA--CCATAAAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAAACAA--TCCAGTTT---A-CTGGGTCTTGG-GCCTCG--CGATTCTGC-GGGCCTTAAAACTAGTGGCGGTGCTCT-TAGGCTCTACGCGTAGTAACTT-TCTC----GCTATAGAGTCCTGA-GGGATGCTTGCCA-ACAACCCCAAATTTTCTT--AGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGG- Lachnum_clandestinum_U58636 ------------------------ATCATTAC-----AGAGTTC-ATGCCCTAA------CGGGTAGATCTCCC-ACCCTTGTGTAATATAATTATC-TGTTGCTTTGGCGGGTCGCAAGTTCG-----------------CTTGCCCTGTGTATCCGCCAGAGGACCAAT-AAATTCTGAATGTTA-ATGTCGTCTGAGTA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCAA--TCCAGCTT---G-CTGGGTCTTGG-GCTTCG--CCTCCCTGGCGGGCCTTAAAATCAGTGGCGGTGCTTT-CAAGCTCTACGCGTAGTAATTTCTCTC----GCTATAGGGTCTTGA-GGGATGCTTGCCA-ACAACCCCAAATTTTCTT--AGGTTGACCTCGG------------------------------------------------ Lachnum_virgineum_LVU59004 TCCGTAGG-TGAACCTGCGGAAGGATCATTAC-----AGAGTTC-ATGCCCTTC------GGGGTAGATCTCCC-ACCCTTGTGTATCATTATAGAA-TGTTGCTTTGGCGGGCCGCGCCTCGTG-----CGCCTAAGATTCGCGTCTAGCGTGCCCGCCAGAGGACCCCT-AAACTCTGAATGTTA-GTGTCGTCTGAGTA--CTATTAAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTC-GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTATACCAA--TCTAGCCT---GGCTAGGTGTTGG-GCGCCG--CCGC-CTGGCGGGCCTTAAAACTAGTGGCGGTGCTCT-CAAGCTCTACGCGTAGTAATCT-TCTC----GCTACAGGGTCTTAG-GAGATGCTAGCCA-GCAATCCCAAATTTTTCT--AGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGG---- Mitrula_brevispora_AY789294 ---------------------------------------------------TAA------CGGGTAGATCTCCC-ACCCTTGTCAATTATACCA----TGTTGCTTTGGTAGCTTG----TCTCA-----CGACT-------------ATCA-GTCTACCAGAGAACCT---AATTCTTAAATATT----ATTGTCTGAATA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACACCAA--TCAAGCTC---AGCTTGGTCTTGGAGCAAACGATTTT--TCGTCGCTCCCAAACCCATTGGCGGTGCCAA-GTTGCTCTATGCGTAGTAAATCTGCC-----GCAATAGA-ACCCAATTGGAAACTTGCCA-ACAACCCCCCATTTTTT-CAAGTTTGACCTCGGATCAGGTAGGAATG---------------------------------- Mitrula_paludosa_AY789424 TCCGTAGG-TGAACCTGCGGAAGGATCATTAC-----CGAGTTC-ATGCCCTCA------CGGGTAGATCTCCC-ACCCTTGTGATTAATACTA----TGTTGCTTTGGTAGCGGGC---TTTCG-----GGCTT-------------ATCA-GTCTACCAGAGAACCCC--AACTCTTAAATTTT---TATTGTCTGAATA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATAATCACCAC--TCAAGCTCTTCAGCTTGGTCTTGAAGCACACGATTTCGGTTGTGGCTTCCAAACCTATTGGCGGTGCCTCTGTGGCTCTTTGCATAGTAATTTTTTTTTCTTGCAAGAGAGACCCAA--AGGGATTTGCCAGACAAACC-------------------------------------------------------------------------- Mollisia_cinerea_DQ491498 CTCACAGCAATACCAGTGACACACACTCATAC---TGGGGGCTTCGACCCCCGGG----CCGGTTGAAT-CCCAC--CCGTGTCTACAT-ACTCT---TGTTGCTTTGGCAGGCCGTGGTCTCCA-------CTGTGGGCTCTGCCTACATGTGCCTGCCAGAGGACC----AAAATCTGAATTTTA-GTGATGTCTGAGTA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTATAACCAC--TCAAGCCT---GGCTTGGTATTGGAGTTTGCGGTTCC----GCAGCTCCTAAAATCAGTGGCGGTGCCGGTGTGGCTCTACGCGTAGTAATTCTTCTC----GCGATGGAGTTCCCC-TGGTTGCTTGCCA-GAAACCCCC------------------------------------------------------------------------ Myxotrichum_deflexum_AF062814 --------------------------CATTAC-----AGAGTTC-GCGCCCTTA------TGGGTAGATCTCCC-ACCC-TGTGCTATCGTCCC-TG-TGTTGCTTTGGCGGGCCGCTGGGCTCGACCCGGCCGCCGGCTCCGGCTGGCGCGCGCCCGCCAGAGGCTCT--ACAACTCTTGATGTTT-GTGATGTCCGAGTA--CTATACAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTGTGGCATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTCAACCC---TCAAGCTCT---GCTTGGTGTTGGGCCTGGCCCGTTGC--GGCCGGTCCTAAAATCAGTGGCGGTGCCGCC-TGGCTCTAAGCGTAGTA-ATGCTCTC----GCTCTAGGG-TCCGG-TGGTCGCTGGCCA-GAA--CCCCAACTT-CT--ATGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCG----- Ombrophila_violacea_AY789366 ---AAAGG-TGAACCTGCGGAAGGATCATTAC-----TGTGTTCACTGCCCTGA------TGGGTAGAAACGCC-ACCCTTGTGTATATTATCA----TGTTGCTTTGGTAGGCCGC---CTTTG-----GGCACCGGCTTCGGCGGGATCGCGCCTGCCAGAGGACCCC--AAACTCTGATTGTCA-GTGTCGTCTGAGTA--CTATACAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTTAAACCAA--TCCAGCCT----GCTGGGTCTTGG-GCTCTCGCCTTAGG--GCGGGCCTTAAAATCAGTGGCGGCGCCTC-CCGGCTCTACGCGTAGTAATTCTTCTC----GCGATGGGGTCCCGGGTGGTCGCTGGCCA-GCAACCCCCAATTCTT--AAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA-CATATCAATAA-------- Phialocephala_fortini_AY347413 TCCGTAGG-TGAACCTGCGGAAGGATCATTACAAGTGAGGCTACCGAACGTTGGAAACAGCGGTTAGGAGCTTACACCCACCCGTGTTTACATACTATTGTTGCTTTGGCGGGCCGTGGCCTCCA-------CTGCGGGCTCTGCTCGTGTGTGCCCGCCAGAGGACC----AAACCCTGAATGTTA-GTGATGTCAGAGTA--CTATTTAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATT-TAACCAC--TCACGCCT---AGCGTGGTATTGGGGCACGCGGTCTC----GCGGCCCTCAAAATTAGTGGCGGCGCCGG-TGGGCTCTAAGCGTAGTACATACTCCC----GCTATAGAGTTCCCC-CGGTGGCTCGCCA--GAACCCCCAATTTTTA--CAGGTTGACCTCGGAT---------------------------------------------- Sclerotinia_sclerotio_AF455526 TCCGTAGG-TGAACCTGCGGAAGGATCATTAC-----AGAGTTC-ATGCCCGAA------AGGGTAGACCTCCC-ACCCTTGTGTATTATTACT--T-TGTTGCTTTGGCGAGCTGC---CTTC------------------GGGCCTTGTATGCTCGCCAGAGAATACCA-AAACTCTTTTTATTA-ATGTCGTCTGAGTA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCC---TCAAGCTT---AGCTTGGTATTGA-GTCTATGTCAGTAATGGCAGGCTCTAAAATCAGTGGCGGCGCCGC-TGGGTCCTGAACGTAGTAATATCTCTC----GTTACAGGTTCTCGG-TGTGCTTCTGCCA---AAACCCAAATTTTTCTA-TGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Vibrissea__albofusca_PDD88457 TCCGTAGG-TGAACCTGCGGAAGGATCATTAA-----AAGACGA---GCGGGTA------ACCGCGAAGTCCATAACCCCTTTGTCTACTTATAT---TGTTGCTTCAGCGGGCCGCTGGC-CTCGTC--AGCGCCGGCTTCGGCCGGACCGTGCCCGCTAGAGG-ACTCC-AAACTCTGAATGTTA-GTGTCGTCTGAGTA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTATCACCAC--TCCAGCC---TGGCTGGGTCTTGGGCACCGCCGGTA----GGCGGGCCTTAAACGTAGTGGCGGTGCTGC-CAGGCTCTAAGCGTAGTAATTC-TCTC----GCTATAGGGTCCTGG-GAGAGGCTGGCCA-T-AACCCCCAATTTTTA--CAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Vibrissea_albofusca_AY789384 TCCGTAGGGTGAACCTGCGGAAGGATCATTAA-----AAGACGA---GCGGGTA------ACCGCGAAGTCCATAACCCCTTTGTCTACTTATAT---TGTTGCTTCAGCGGGCCGCTGGC-CTCGTC--AGCGCCGGCTTCGGCCGGACCGTGCCCGCTAGAGG-ACTCC-AAACTCTGAATGTTA-GTGTCGTCTGAGTA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTATCACCAC--TCCAGCC---TGGCTGGGTCTTGGGCACCGCCGGTA----GGCGGGCCTTAAACGTAGTGGCGGTGCTGC-CAGGCTCTAAGCGTAGTAATTC-TCTC----GCTATAGGGTCCTGG-GAGAGGCTGGCCA-T-AACCCCCAATTTTTA--CAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT---------- Vibrissea_flavovirens_AY789427 TCCGTAGG-TGAACCTGCGGAAGGATCATTACCAGTGAAGTGCCCGCGCCCTCG------TGGCCGGGTGCC--CACCCACCCGTGTTTACATACTCTTGTTGCTTTGGCAGGCCGTGCTCTGCA-------CTGCGGGCTCTGCTCGTGTGTGCCTGCCAGAGGACC----AAACCCTGAATGTTA-GTGATGTCTGAGTA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTATAACCAA--TCATGCCT---GGCATGGTGTTGGGGCGCGCGGTCTC----GCGGCCCTCAAAATCAGTGGCGGCGCCGG-TAGGCTCTAAGCGTAGTAACTTCTCTC----GCTATAGGGTCCTGA-CGGTTGCTCGCCA--GAACCCCC-ACTTCTT--AAGGTTGACCTCGGATC--------------------------------------------- Vibrissea_sp_D772 -----------AACCTGCGGAAGGATCATTACCAGTGAAGTGCCCGCGCCCTCG------TGGCCGGGCGCC--CACCCACCCGTGTTTACATACTCTTGTTGCTTTGGCAGGCCGTGCTCTGCA-------CTGCGGGCTCTGCTCGTGTGTGCCTGCCAGAGGACC----AAACCCTGAATGTTA-GTGATGTCTGAGTA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTATAACCAA--TCATGCCT---GGCATGGTGTTGGGGCACGCGGTCTC----GCGGCCCTCAAAATCAGTGGCGGCGCCGG-TAGGCTCTAAGCGTAGTAATTTCTCTC----GCTATAGGGTCCTGA-CGGTTGCTCGCCA--GAACCCCCCACTTCTC--AAGGTTGACCTCGGATCAGGTAGG-------------------------------------- Vibrissea_sp_PDD99892 TCCGTAGG-TGAACCTGCGGAAGGATCATTACCAGTGAAGTGCCTGCGCCCTCG------TGGCCAGGTGCC--CACCCACCCGTGTTTACATACTCTTGTTGCTTTGGCAGGCCGTGGCCTCCA-------CTGCGGGCTCTGCTCGTACGTGCCTGCCAGAGGACC----AAACTCTGAATGTTA-GTGATGTCTGAGTA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCATTATAACCAA--TCACGCCT---GGCGTGGTGTTGGGGCACACGGTTCT----GTGGCCCTCAAAATCAGTGGCGGTGCCGG-TTGGCTCTAAGCGTAGTAACTTCTCTC----GCTATAGATGTCTGC-TGGTTGCTCGCCA--GAACCCCCCATTTTTT--CAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCA------------ Vibrissea_sp_PDD99893 TCCGTAGG-TGAACCTGCGGAAGGATCATTACCAGTGAAGTGCCTGCGCCCTCG------TGGCCAGGTGCC--CACCCACCCGTGTTTACATACTCTTGTTGCTTTGGCAGGCCGTGGCCTCCA-------CTGCGGGCTCTGCTCGTACGTGCCTGCCAGAGGACC----AAACTCTGAATGTTA-GTGATGTCTGAGTA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCATTACAACCAA--TCACGCCT---GGCGTGGTGTTGGGGCACACGGTTCT----GTGGCCCTCAAAATCAGTGGCGGTGCCGG-TTGGCTCTAAGCGTAGTAACTTCTCTC----GCTATAGATGTCTGC-TGGTTGCTCGCCA--GAACCCCCCATTTTTT--CAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Vibrissea_truncorum_EU434855 --------------------------CATTACCAGTGAAGTGCCTGTGCCCTCG------TGGCCAGGTGCC--CACCCACCCGTGTTTACATACTCTTGTTGCTTTGGCAGGCCGTGGCCTCCA-------CTGCGGGCTCTGCTCGTACGTGCCCGCCAGAGGACC----AAACTCTGAATGTTA-GTGATGTCTGAGTA--CTATATAA-TAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCATTATAACCAA--TCACGCCT---GGCGTGGTGTTGGGGCACACGGCTCC----GTGGCCCTCAAAATCAGTGGCGATGCCGG-TTGGCTCTAAGCGTAGTAACTTCTCTC----GCTATAGATGTCTGC-TGGTTGCTCGCCA--GAACCCCCCATTTTTT--CAGGTTGACCTCGGAT---------------------------------------------- ; END; [ The following blocks are output data for analysis step 13840 ] BEGIN TREES; TITLE Chlorovibrissea_MrB; LINK TAXA = TaxaForAnalysisStep13840; TREE con_50_majrule = [&R] ((Mitrula_brevispora_AY789294:0.066799,Mitrula_paludosa_AY789424:0.074379):0.1095885,(((Hydrocina_chaetocladi_AY789413:0.22953,(Ascocoryne_cylichnium_AY789395:0.071261,Ascocoryne_sarcoides_AY789388:0.016586)1.00:0.116063)1.00:0.180383,((Mollisia_cinerea_DQ491498:0.096094,Hyaloscypha_daedaleae_AY789416:0.261752)1.00:0.126107,(Chloroscypha_chloromela_U92311:0.382683,(Phialocephala_fortini_AY347413:0.067778,((Vibrissea_flavovirens_AY789427:0.004984,Vibrissea_sp_D772:0.008208)1.00:0.033704,(Vibrissea_truncorum_EU434855:0.011996,(Vibrissea_sp_PDD99893:0.004239,Vibrissea_sp_PDD99892:0.002146)0.65:0.004154)1.00:0.035302)0.98:0.028917)0.57:0.027645)0.92:0.062729)0.89:0.063959)0.91:0.05091,((Hymenoscyphus_scutula_AY789432:0.083749,(Cudoniella_clavus_AY789374:0.045152,(Cudoniella_sp_AY789342:0.002181,Ombrophila_violacea_AY789366:0.002314)1.00:0.052177)1.00:0.031957)0.99:0.047113,(Sclerotinia_sclerotio_AF455526:0.197295,(Lachnum_virgineum_LVU59004:0.111054,Lachnellula_calyciformis_U59145:0.058961,(Lachnum_bicolor_LBU59005:0.112655,Lachnum_clandestinum_U58636:0.035466)0.99:0.033579)0.94:0.043612)0.63:0.041,((Bisporella_sp_AY789326:0.096118,(Chlorociboria_aerugin_AY755360:0.210396,(Myxotrichum_deflexum_AF062814:0.13649,Hyphodiscus_hymeniophilus_AB546951:0.084516)0.71:0.029319)0.96:0.03778)0.99:0.036627,((Chlorovibrissea_sp_DQ257353:0.05311,(Cholovibrissea_bicolor_AU9671:0.015028,Chlorovibrissea_phialophora_PDD83226:0.044015)1.00:0.057376)1.00:0.065788,(Chlorovibrissea_chilensis_PDD99891:0.020508,(Vibrissea_albofusca_AY789384:0.002153,Vibrissea__albofusca_PDD88457:0.002144)0.80:0.007568)1.00:0.07134)1.00:0.127259)0.65:0.022453)0.50:0.026958)1.00:0.1095885); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr75519] END;