#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 12:29 GMT TreeBASE (cc) 1994-2008 Study reference: Eberhardt U. 2002. Molecular kinship analyses of the agaricoid Russulaceae: correspondence with mycorrhizal anatomy and sporocarp features in the genus Russula. Mycological Progress, 1(2): 201-223. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S840] [ The following blocks are input data for analysis step 1386 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1386; DIMENSIONS NTAX=12; TAXLABELS Russula_aeruginea Russula_amoenolens Russula_chloroides Russula_cyanoxantha Russula_delica Russula_densifolia Russula_foetens Russula_heterophylla Russula_laurocerasi Russula_nigricans Russula_parazurea Russula_vesca ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M286] TITLE ITS_Fig._4; LINK TAXA = TaxaForAnalysisStep1386; DIMENSIONS NCHAR=830; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Russula_aeruginea TCCGTAGGTGAACCTGCGGAAGGATCATTATAGTACAA--CGGAGGTGCCTGGGCTGTTGCTGACCTC-----AAGGTCGTGCACGCCCGGAGTGCTCTCTCAC------ATCCATCTCACCCC-TTTGTGCATCATCGCGTGGGGCCCTCTCCTTT-GGCTTGTTCCG---GAAGGGGGGGGGTTCACGTTTTT----ACA-CGAACAA--CCCATT-AATGCA------------------TGTGTAGAATGTCTT-ACTTTTT-GCGGTCACACGC-AATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGTGCACCCGTTTGAGTGTCGTGAACACCC-TCAA--CCTT-CTTGGTTT--ATCGA--CC-GGGAAGGCTT-GGACTTTGGAGGTTTTT-GTTGCTGGCCTC-----GTTTGAA--GCCAGCTCCTCCTAAACGAATTAGTGGGGTCCGCCGTGCC-GACCCTC-GACGT-GATAAGTACG-CTTCTACGTCTTGGGGTTTCGCACTGT-CG----------------CCTGCTT-CCAACCGTCTT----TG-AATGAAGACAA-------------------------------------------TCTT------------------------------ATAGACCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATC------------- Russula_amoenolens TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAA--TGGAGGTGCTGGGGTTGTCGCTGACCTTT-GAAAGGGTCGTGCACACCTC-GGTGCTTTCACACAC---AATCCATCTCACCCCTTTTGTGCATCACCGCGTGGGGG--TC-CCTTTTAGCTAGTTCT----GAAGGGGG--CTTTCGCGTTTTT----ACAA-ACACA---CCCTTTTAATGCAA-----------------TATGTAGAATGTCTT-ACTTTTT-GCGATCACACGC-AATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGCATTCCGAAGGGCACACCCGTTTGAGTGTCGTGA-CATCC-TCAAA-CCTT-CTTGGTTTCTT--GA--CT-GAGAAGGCTTTGGACTTTGGAGGCTTT----TGCTGGACCTTTGCTTGTTGAA--GCCAGCTCCTCTTAAATGAATTAGTGGGGTCTGCTTTGCT-GATCCTT-GACGT-GATAAG-ATG-CTTCTACGTCTTGGG-TTACGCACTGTTTGCTATAGAT--------CCTGCTT-CTAACCGTCTC-------ATAGAAGACAAA----------------------------------------------CGGTCGA-----------CTT---GACCC-ACA-------------------------------------------------------------- Russula_chloroides TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTAAAA--TGGGGGTACCAGGGCTGTCGCTGACTTTT-------GTCGTGCACGCCC-GAGTGCTCTCACATACAAATATCCATCTCACCCC-TTTGTGCATCACCGCGTGCGTCCCCCCTTCCTCGG-------------AGGGGGGG-TGCTCACGTTTTT---AACATCAAACA---CC----------------------------TAGTATAGAATGTT----CTTT-GCGCGATCATGCGC-GATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAACATCC-TCAA--CCTG-CTTGGTTTTTATCGAAACC-AACTAGGCTT-GGAATTTGGAGGTTTT---CTGCTGGCTTC-----CTCCAAA--GCCAGCTCCTCTTAAATGTATCAGTGGGATCCGCTTTGCTAGATCCTC-GACGTTGATAAG-ATG-TTTCTACGTCTTGGG----------TTTCGCTC-----GGGAAGGACCTGCTT-CTAACCGTCCC-------ATCGGGGACAA-TGTTCGAG--------CCGATCGCCCTTCACGGGGTGGGAAG----------------------CTTT-CGACCCATCGAACCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Russula_cyanoxantha TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTATAA--CGGAGGTGCCGGGGCTGTCGCTAACTTT-----------GTGCACGCCCT-GGTGCTCTCTCAC-----AATCCATCTCACCCCCTTTGTGCATCACCGCGTGGGTG-CTCTCCTTTTGGTTTGTTCC----GAAAGGGGG-CATTTGCGTTTTT----ATA-CAAAA----CC-----ACTGCA------------------TGTGTAGAATGTCTT-ACTATTT-GCGATAATGCGC-AATTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGAATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAACATCCTTCAA--CCTTTCTTGGTTTCTT--GA--CCGAGGAAGGCTT-GGACTTTGGGGGTCTTTCATTGCTGGCCTC------TTTGAA--GCCAGCTCCTCCTAAATGGATTAGTGTGGTCTGCTTTGCC-GATCCTT-GACGT-GATAAG-ATG-TTTCTACGTCTTGGG-TTTTGCACTGT-CGCTTTAGAC--------CCCGCTT-CTAACTGTCTCGTCTTGCATTCAAGACA-------GAGTTTTT-----------------------------------------------------------------AAACCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Russula_delica -----AGGTGAACCTGCGGAAGGATCATTATCGTACAA--TGGGGGTACCCGGGTTGTCGCTGACTTTTC------GTCGTGCACGCCC-GAGTGCTCTCACATACAAATATCCATCTCACCCC-TTTGTGCATCACCGCGTGTGTCCCCCCTTCCTCGG-------------AGGGGGG--TGCTCACGTTTTT--AAACATCAAACA---CCC---------------------------TAGTGTAGAATGTT----CTTT-GCGCGATCACGCGCGAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAACATCC-TCAA--CCTG-CTTCGTT-CTATCGAA-CC-AAGTAGGCTT-GGAATTTGGAGGTTTTTT-CTGCTGGCTTCT--TCCTCTGAA--GCCAGCTCCTCTTAAAATTATCAGTGGGATCCGCTTTGCTAGATCCTC-GACGTTGATAAG-ATG-TTTCTACGTCTTGGG----------TTTCGCTC-----GGGAAGGACCTGCTT-CTAACCGTCCC------CATCGGGGACAA-TGTTCGAG------AGCCGATCGCCCTTCACGGGGTGGGAAG----------------------CTTTTCGACCCATGAAACCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAA-------- Russula_densifolia TCCGTAGGTGAACCTGCGGAAGGATCATTATGGTACTA--CAGAGGCGCGAAGGTTGTCGCTGATCTTTCTGAAAGGTCGTGCACGCC-GGAGCGTTCTCACACAC---AATCCACCTCACCAC--TTGTGCTTCACC{AG}CGCGGGGTCGCTCCCTCTTGGCTCGCTTC----GAGAGGGGGAGGCTTGCGTCTTTTT-CACA-CACACACACAC------------ATAATATACAGTCTGGTAGTTTAGAATATC------------------------AATCAATACAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCCCTTGGTATTCCGAGGGGTACACCCGTTTGAGTGTCGTGAAT-TTC-TCAAA-CCTT-CTTGGTTTCTT--GA--TC-AAGAAGGCTTTGGACTTTGGAGGTCTT----TGCCGGC-------TTTGCGAAAAGTCGGCTCCTCTTAAATGCATTAGTGGGGTCCCCTTTGCC-GATCTCTAGGCGTTGATAAT-ACG-TTTCTACGTCTTGGG-ATTTGCTCTGTTC-CTT-----GGGAA---CCTGCTT-CTAACCGTCTCACC----GTCGGAGACAT-CGTTCGAGCTTG----------------------------------------------------CT---CGACCC-ACGAACCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATC------------- Russula_foetens ----------------------------------------------TGCTGGGGTTGTCGCTGACTTTT-GAAAAGGTCGTGCACACCTT-GGTGCTCTCACACAT---AATCCATCTCACCCCTTTTGTGCATCACCGCGTGGGGA---CCCCTTTTGGCTAGTTCT----GAGGGGGG--TCTTCACGTTTTT----ACA-TAGACA---CCCTTTTAATGAAA-----------------TGTGTAGAATGTCTTTACTTTT--GCGATCATACGC-AATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGA-CATTC-TCAAAACCTT-CTTGGTTTCTT--GA--CC-GGGAAGGCTTTGGACTTTGGAGGCTTT----TGCTGGCCTTTC-TTTGTTGAA--GCCAGCTCCTCTGAAATGAATTAGTGGGGTCTGCTTTGCT-GATCCTT-GACGT-GATAAG-ATATTTTCTACGTCTTGGG-TTTCGCACTGTT------------------CCTGCTT-CTAACCGTCTC-------ATAGAAGACAA-----------------------------------------------TGGTCAA-GTGATTGCCACTT---GACCC-ACAAACCTTGACCTCAAATCGGGTGAGACTACCCG------------------------------ Russula_heterophylla ----------AACCTGCGGAAGGATCATTATCGTACAA--TGGAGGTGCTGGGGCTGTCGCTGACCTTTAAAAAGGGTCGTGCACGCCCGGAGCACTCTCTCAT------ATCCATCTCACCCC-TTTGTGCATTGCCGCGTGGG----TCCCCT-------------GAAACAAAGGGGG--ACCTGCGTTTTT----ACA-TAGACA---CCCTTTGAATGCA------------------TGTGTAGAACGTCTT-AC--------GAT---------ATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAATACTC-TCAA--CCTT-CTTGGTTTCTTT-GA--CC-AAAAAGGCTT-GGACTTTGGAGGTTTTTC-TTGCTGGCCTC-----TTTTGAA--GCCAGCTCCTCCTAAATGAATGGGTGGGGTCCGCTTTGCT-GATCCTC-GACGT-GATAAGCATTTCTTCTACGTCG-------------TGTCAGCTC------GGAA---CCCGCTTTCCAACTGTCTT----TG-----GAGACAAA-----GACCTTTT{AT}--------------------------------------------------------------ACAA------------------------------------------------------------- Russula_laurocerasi -------------------------CATTATCGTATGA--TGGAGGTGCTGGGGTTGTCGCTGACTTTT-GAAAGAGTCGTGCACGCCTC-GGTGCTCTCACACAT---AATCCATCTCACCCCTTTTGTGCACCACCGCGTGGGGA--CCCCCTTTTGGCTAGTTCT----GAGGGGGG--TTTTCACGTTTTT----ATAACAGACAC--CCCTTTTAATGCAA-----------------TGTGTAGAATGTCTT-ACTTTTTTGCGATCACACGC-AATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGA-CATTC-TCAAAACCTT-CTTGGTTTCTT--GA--CC-GGGAAGGCTTTGGACTTTGGAGGCTTT----TGCTGGCTTCCC-TTTGTTGGA--GCCAGCTCCTCTGAAATGGATTAGCAAGGTCTGCTTTGCC-GATCCTT-GACGT-GATAAG-ATGTTTTCTACGTCTCGGG-TTCTGCACT---------------------CCTGCTT-CTAACCGTCTC-------ACAGAAGACAAA----------------------------------------------TGGTCAAAGTGATTGCCACTTT--GACCC-ACGAACCTTGA------------------------------------------------------ Russula_nigricans TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACTA--CAGAGGTGCGAGGGCTGTCGCTGACCTTTTTCAAAGGTCGTGCACGCCC-GAGCGCTCTCGCCC---AAAATCCACCTCACCAC--TTGTGCATCACCGCGCGGGG-CCTC-CCTCTTGGCTCGCTTC----GAGAGAGG----CTCGCGTTCTT---CACATCACACACACACCTTTT-----------------------TAGTTTTGAATGTC---ATTCATTTGCGATAACACGC-AATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAA-ATTC-TCAAA-CCTT-CTTGGTTCCTT--GA--CC-AAGATGGCTTTGGACTTTGGAGGCGTTG---TGCTGGC-------TTTGCAAAAAGTCGGCTCCTCTTAAATGCATTAGTGGGGTCCCCTTTGCC-AATCCCCAGGCGT-GATAAG-ATG-TTTCTACGTCTTGGG-ATTTGCTCTGTTCACT------GGGAA---CCCGCTT-CCAACCGTCTC-------GTGAGAGACAT-CGTTCGAGCTTG----------------------------------------------------CT---CGGCAC-ACGAATCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Russula_parazurea ---------------------GGATCATTATCA{AT}{AT}CAA--CGGAGGC{AT}CCGGGGCTGTCGC{GT}GACCTT-------GGTCGTGCACGCCCAGAGTGCTCTCTCT----AAAATCCATCTCACCCC-TTTGTGCATCACCGCGTGGG--CCT-TCCTTTTGGCTTGTTCC----GAAGGGGGGG--TTCGCGTTTCTTT-CATA-CAAACA---CCCTTTTAATGCA------------------TGTGTAGAATGTCTT-ACTTTTT-GCGATCACACGC-AATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAATGCCC-TCAA--CCTT-CTTGGTTTCTT--GA--CC-GAGAAGGCTT-GGACTTTGGAGGTTATT-GTTGCCGGCCTC-----TTTTGAA--GCCGGCTCCTCCTAAATGAATTAGTGGGGTCCGCTTTGCC-GATCCTT-GACGT-GATAAGTTTG-CTTCTACGTCTTGGG-TTTCGCACTGT-CGCACC-----GGAA---CCTGCTT-CCAACCGTCTT----TG-AACGAAGACAA-------------------------------------------TATT------------------------------ACGAACCTTGACCTCAA{AG}TCGGGTGGGACTACCCGCTGA-------------------------- Russula_vesca TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTATAAAATGGAGGTGCTGGGGCTGTCGCTGACCTTTGAAAAAGGTCGTGCACGCCCGGAGCACTCTCTCAT------ATCCATCTCACCCC-TTTGTGCATTGCCGCGTGGG----TCCCCTTTTGGCTTGTTCC----GAGGGGG----ACCTGCGTTTTT----ACA-TAGACA---CCCTTTGAATGCA------------------TGTGTAGAACGTCTT-ACTTTTT-GCGATCACACGC-AATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAATACTC-TCAA--CCTT-CTTGGTTTCTTT-GA--CC-ACGAAGGCTT-GGACTTTGGAGGTTTTTC-TTGCTGGCCTC-----TTTTGAA--GCCAGCTCCTCCTAAATGAATGGGTGGGGTCCGCTTTGCT-GATCCTC-GACGT-GATAAGCATTTCTTCTACGTCTTAG----------TGTCAGCTC------GGAA---CCCGCTTTCCAACCGTCTT----TGCAC-AAAGACAA-TGTTCGAGTTGTGA--------------------------------------------------CT---CGACCTTACAAACCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_Fig._4) = N: 1-830; CODONPOSSET CodonPositions (CHARACTERS = ITS_Fig._4) = N: 1-830; END; [ The following blocks are output data for analysis step 1386 ] BEGIN TREES; TITLE Tb6162; LINK TAXA = TaxaForAnalysisStep1386; TREE Fig._4 = [&R] (Russula_chloroides,(Russula_delica,((Russula_densifolia,Russula_nigricans),((Russula_cyanoxantha,((Russula_foetens,Russula_laurocerasi),Russula_amoenolens)),((Russula_heterophylla,Russula_vesca),(Russula_parazurea,Russula_aeruginea)))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5661] END;