#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 20, 2025; 2:23 GMT TreeBASE (cc) 1994-2008 Study reference: Eberhardt U. 2002. Molecular kinship analyses of the agaricoid Russulaceae: correspondence with mycorrhizal anatomy and sporocarp features in the genus Russula. Mycological Progress, 1(2): 201-223. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S840] [ The following blocks are input data for analysis step 1387 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1387; DIMENSIONS NTAX=26; TAXLABELS Russula_amethystina Russula_atropurpurea Russula_caerulea Russula_cavipes Russula_decolorans Russula_emetica Russula_exalbicans Russula_fellea Russula_firmula Russula_fuscorubroides Russula_integra Russula_lepida Russula_mairei Russula_mycorrhizal_type_ue53 Russula_mycorrhizal_type_ue73 Russula_ochroleuca Russula_olivacea_ue085 Russula_olivacea_ue138 Russula_puellaris Russula_queletii Russula_raoultii Russula_sardonia Russula_solaris Russula_veternosa Russula_vinosa Russula_xerampelina ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M285] TITLE 'ITS Figs. 5-6'; LINK TAXA = TaxaForAnalysisStep1387; DIMENSIONS NCHAR=1053; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Russula_amethystina --------------------------------------------------------------------------AAAGGTTGTGCACGCCCG-AGTGCCCT--CACAC---ATCCATCTCACCCC--TTTGTGCATCACCGCGTGGGTC--T{CT}CTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------AAAAGGAG-CTCACGTTTT--CACACAAAA-{CT}T-TG-ATACAGTGTAGAATGTTATCTTT-------------GCGGTCACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATCCTCAAAATCCTTTTT----GGGCTT----ACCC--------------------AAAAGG{AG}---{GT}TTTTGGACTTGGAGGTT-TAATGCTTGCCTTTCAC---CTGTGAAAGTGAGCTCCTCTCAAATGAATTAGTGGGGTC{CT}GCTTTGCCTGATCCTTGAC-GTGATAAGATGTTTCTACGTTTT-GGATTTT-GGC-ACTGTACCTTGGATGCCTGCTTCTAACCGTC-TCAT-GGACAA--TGGATG-GTGCTCTGGTCCCCTGCCT---TCTAACGTTGGT---GGGAGG-CTGGACCCACAGATGAAAA------CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGG---- Russula_atropurpurea TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTAACAACGGAGG-CGC-GAGCGCTGTCGCTGACCTGAACCCTCAGGTCGTGCACGCCCG-AGCGTTCTCTTAC-----ATCCATCTCACCCC--AATGTGCACCACCGCGTGGGTC-CCCCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTTGTCC-GGAGGGAGG-CTTGCGTTTT--CACACAAA--CT-TGTATGCAGTGTAGAATGTACCTTTGTTTT---------GCGAT--CACGCAATTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATTCTCAAAA-CCCTTCTTCGT----------CATC------------------GGGAAAGGG----TTTTGGATTTGGAGGCCTTT-TGCTGGTTT-CGTG-----TCGAA-GCCGGCTCCTCTTAAACGAATCAGTGGGGTTCGCTTTG-TCGATCCTTGAC-GTGATAAGATGTTTCTGCGTCTT-GGGTTT--GGC-ACCGTT--------GCCCGCTTCTAACCGTC-TCAT-CGACAA---CGATG-GTGTTCCGGT-CGCCGCCT---CTC--CGTAGGT---GGTCGG-CTTGACCCACAACAAA---------CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATC------------- Russula_caerulea TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTA-CAACCGAGG-TGT-GAGGGCTGTCGCTGACCTTT----GAAGGTCGTGCACGCCCA-AGCAACCTCTTACAC---ATCCATCTCACCCC--TTTGTGCATCACCGCGTGGGTC--CCCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---------AGGAGGG-CTTGCGTTTT--CACATAAAA-CT-TG-ATACAGTGTAGAATGTTTTTGCTTTT----------GCGGTCACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATATCAAAAAACCTTTTTTCTTT----------------------------------AAAGGATTTTTTTTGGACTTGGAGGTT-CCATGCTCGGTTTTGCT----TTTGAAAGCGAGCTCCTCTCAAATGAATTAGTGGGGTCCGCTTTG-CTGATCCTTGAC-GTGATAAGATGTTTCTACGTTTT-GGATTT--AGC-ACTGTCCCTTGGACGCCCGCTTCCAATCGTC-CCAT-GGACAATAATGATG--TGCTCTGGT-CATCGCTG---TCT-ACATTGGC--AGGGAGGGCTGGACACACACAAAAAAGAA----CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Russula_cavipes TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTAA-AACCGAGG-CGC-GAGGGCTGTCGCTGACTTTTTC------GTCGTGCACGCCCG-AGCGTTCT--CAAAC---ATCCATCTCACCCC--TATGTGCACCACCGCGTGGGTC--CCCTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGG-CTCACGTTTT--CACACAAA--CT-CG-ATACAGTGTAGAATGTTTTTCTTTT-----------GCGATCACACGCAATTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGACATTCTCAAAA-TCTTTTCTTTT----------------------------------GAAACGA----TTTTGGACTTGGAGGCTTTT-TGCTGGTTT--CAC----CTTGAA-GCGAGCTCCTCCTAAACGAATTAGTGGGGTCTGCTTTG-CTGATCCTCGAC-GTGATAAGATGCTTCTACGTCTT-GGGCTT--GGC-AATGT-------GCGCCTGCTTCTAACCGTC-TCAT-CGACAA---TGATG-GCGTTCCGGT-CACCACCG---TTT--CATCGGTT--GGGAGG-CTTGACCCACCAAAAAAA-------CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Russula_decolorans --CGTAGGTGAACCTGCGGAAGGATCATTATTGTA-AAACCGAGG-CACAAAGAGCTGTCGCTGACCTTC----AAAGGTTGTGCACGCTCG-AGTGCTCT--CACAC---ATCCATCTCACCCC-TTTTGTGCATCACCGCGTGGGCC-CTCCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------AGGAGGG-CTTGCGTTTT--CACATAAAA-CT-TG-ATACAGTGTAGAATGTTTTCTTTTCTTTT-------GCGGTCAAACGCAATTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATCATCAAAA-CCTTTTCCTTT----------GATCCTCTTTT------GGTCGGGAAAAGGA---TTTTTGGACTTGGAGGTT-CTATGCTCGCTTTT----------GAAAGCGAGCTCCTCTCAAATGAATTAGTGGGGTCTGCTTTG-CTGATCCTTGAC-GTGATAAGATGTTTCTACGTTTT-GGATTT--GGC-ACTGTCCCTTGGACGCCTGCTCCTAACCGTC-TGTT-GGACGA---CGATG-GTGCTTCGGT-CACTGCCA---TCT-ACATTGGC---GGGAGG-CTGGACCCACAAAAAAGA-------CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAA-------- Russula_emetica --CGTAGGTGAACCTGCGGAAGGATCATTATCGTAA-AACCGAGG-TGC-GAGGGCTGTCGCTGACCTTTTC-----GGTCGTGCACGCCCG-AGTGCTCT--CACACA--ATCCATCTCACCCC---TTGTGCACCACCGCGTGGGTC---CCTCTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTCGTCC-GGAGGGGGG-CTCGCGTTTT--CACACAAA--CT-TGAA-GTAGTGTAGAATGTCCTTTTTT------------GCGATAACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATTCTCAAAACCCTTTCTTTT-GGTCATTTTTGACCAT-----------------GGAAAGGA----TTTTGGACTTGGAGGCCTTTTTGCTGGTTT--CAA---CCTTGAA-GCGAGCTCCTCCCAAATGTATTAGTGGGGTCTGCATTG-TCGGTCCTTGGC-GTGATAAGTTGTTTCTACGTCTT-GGATTTTTGGC-GCTGT-------ACACCTGCTTCTAACCGTC-TCAT-TGACAA---CGATG-GTGTTCCGGT-CGCCGCCG---ATT--TTTCGGT---GGGAGG-CTTGACCCACGAAACAAA-------CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Russula_exalbicans -----AGGTGAACCTGCGGAAGGATCATTATCGTA-CAACTGAGG-CGC-GAGGGCTGTCGCTGACTTTTC-------GTCGTGCACGCCCG-AGCGCTCT--CATAC---ATCCACCTCACCCC--TATGTGCACCACCGCGTGGGTC--CCCTCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGGGG-CTCGCGTTTTCACACACAAA--CT-CG-ATACAGTGTAGAATGTCCTTCTTT------------GCGATCACACGCAATTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATTCTCAAAA-CCTTTTTTCTC---------------------------------GAAAAGGA----TTTTGGACTTGGAGGCTTTT-TGCTGGTTT--CAC----ATCGAA-GCGAGCTCCTCCTAAATGGATTAGTGGGGTCTGCTTTG-CCGATCCTTGAC-GTGATAATATGTTTCTACGTCTT-GGGT{GT}{GT}T-GGC-ACTGT--------C{AG}CCCGCTTCTAACCGTC-TCAT-CGACAA---TGATG-GCGTGCCGGT-CACCGCCG---TTT--CATCGG{CT}----GGAGG-CTTGACCCACCAAAAAA--------CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Russula_fellea TCCGTAGGTGAACCTGCGGAAGGATCATTATCGCA-TAACCGAGG-CGC-AAGGGCTGTCGCTGACTTTTT-------GTCGTGCACGCCCG-AGTGCTCT--CACACACCATCCATCTCACCCC--TATGTGCACCACCGCGTGGGTC-CCCCTTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTTGTTC-GGAGGGGGG-CTTGCGTTTT--CACACAAA--CATTG-ATGCAGTGTAGAATGTCTTTTATTTTATTT------GCGATCACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATTATCAAAACCCTTTCTTTTTGGTCTTTT--GATC-----------------GGGGAAAGG-----TTTTGGACTTGGAGGCCTTT-TGCTGGTTT-CGCC-----TTGAA-GCGAGCTCCTCCTAAATGAATTAGTGGGGTCTGCTTTGCCCGATCCTTGAC-GTGATAAGATGCTTCTACGTCTC-GGGTTT--GGC-ACTGTCCCTTGGGCACCTGCTTCTAACCGTCCTCAT-GGACAT---CGATG-GTGTTCTGGT-CACCACCG---TTT--CATCGGT---GGGAGG-CTTGACCCACGAACGAA--------CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATAT-------------- Russula_firmula TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTA-CAACCGAGG-TGC-AAGGGCTGTCGCTGACCCTC----AAAGGTTGTGCACGCCCAAAGCGCTCT--CACAC---ATCCATCTCACCCC-TTTTGTGCATCACCGCGTGGGCC-CCCCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------AGGAGGG-CTTGCGTTTT--CACACAAAA-CT-TG-ATACAGTGTAGAATGTTTTTCTCTT-----------GCAGTCACATGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATCATCAAAA-CCCTTTTCTTT----------GATCCCTATT-----GTGGTCAGGAAAAGGA---TTTTTGGACTTGGAGGTT-TCATGCTTGCTTTTGCT----TTCAAAAGTGAGCTCCTCTCAAATGAATTAGTGGGGTCTGCTTTG-CTGGTCCTTGAC-GTGATAAGATGTTTCAACGTTTT-GGATTT--GGC-ACTGTCCCTTGGATGCCTGCTTTTAACTGTC-TCTCGAGACAA---TGATG-GTGCTTCGGT-CACCGGCCAA-TCT-ACATTGGC--GGGGAGG-CTGGACCCACAAAAAGAAAAGA---CCTTGACCTCAAAT---------------------------------------------- Russula_fuscorubroides TCCGTAGGTGAACCTGCGGAAGGATCATTATTGTA-AAACTGAGG-TGC-AAGGGCTGTCGCTGACTTTT-------GGTCGTGCACGCCCG-AGCATTTT--CAAACA--ATCCATCTCACCC-----TGTGCACCACCGCGTGGGTC-CCCCTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTCGTTC-AGAGGGGGGGCTTGCGTTTT--CACACAAA--CT-CG-ATACAGTGTAGAATGTCTCTT---------------GCGATAACACGCAATTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATTCTCAAAAACCTTTCTTTTT----------------------------------GAAAGGG----TTTTGGACTTGGAGGCTCTT-TGCTGGCTTTTGCC--------------GGCTCCTCTCAAATGAATTAGTGGGGTCCGCTTTG-TCGATCCTTGAC-GTGATAAGATGTTTCTACGTCTC-GGGTTT--GGC-GATGCCTCTTGGGCACCTGCTTCCAACCGTC-TCAT-GGACAA---TGATG-GTGTTCCGGT-CACCGCCG---TTT--CATCGGTC--GGGAGG-CTTGACCCACCAACAAAAC------CTTTGACCTC-------------------------------------------------- Russula_integra TCCGTAGGTGAACCTGCGGAAGGATCATTATTGTA-TAACCGAGG-TGC-AAGGGCTGTCGCTGACCTTTT---AAAGGTTGTGCACGCCCG-AGCACTCT--CACACA--ATCCATCTCACCCC-TTTTGTGCATCACCGCGTGGGCC-CCCCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------AGGAGGG-CTTGCGTTTT--CACATAAAA-CT-TG-ATACAGTGTAGAATGTTCTTTTTATTTATTTATTTTGCGGTCACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATCATCAAAAACCCTTTTTGTTT--------------------------------GAAAAGGA---TTTTTGGACTTGGAGGTT-CCATGCTCGCCTTTGCT----TTTGAAGGTGAGCTCCTCTCAAATAAATTAGTGGGGTCCGCTTTG-CTGATC{CT}TTAAT-GTGATAAGATGTTTCTACATTTT-GGATTT--AGC-ACTGTCCCTTGGAAGCCTGCTCCTAACTGTC-TTTT-GGACAA---TGATG-GTGCTCCGGT-CATCGCCA---TCT-ACATTGGC---GGGAGG-CTGGACCCACAAAGACAA-------CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCA------------ Russula_lepida TCCGTAGGTGAACCTGCGGAAGGATCATTATAGTA-CAATGGAGG-TGC-GACGGCTGTTGCTGACCCTTC---AAAGGTCGTGCACGCTCG-AGCTCTCTCTTACAC---ATCCACCTCACCC---TTTGTGCATCGCCGCGTGGGTC-CCCCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGGGGG--CTTGCGTTTTT-CACATAAAA-CT-AG-ATGCAGTGTAGAATGTCTTTTATTTTT---------GCGGTCACACGCAATCAATATAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATCCTCAAAA-CCTGTTCTTC-----------GATT-----------------GGGGAAAGGG----TTTTGGACTTGGAGGAT-CAATGCTTGCCCT-CAC----TTTGAAGGCGAGCTCCTCTCAAATAAATTAGTGGGGTTTGCTTTG-CTGATCCTTGACGGTGATAAGACATCTCTACGTTTT-GGATTT--GGCGACTGTCCCTT--------GCTTCTAACCGTC-CTAT-GGACAA---TGATGGGTGCACCGGTCCACCACC-----TT-ACATTGGT---GGGGGG-CTGGACCCACAAAAAGGA-------CCTTGACCTCAAATCGGGTGA{CG}ACTACCCGCTGAACTTAAGCATATCAAT---------- Russula_mairei --CGTAGGTGAACCTGCGGAAGG{ACG}TCATTATTGTAA-AACCGAGG-TGC-GAGGGCTGTCGCTGACCTTTTC-----GGTCGTGCACGCCCA-AGTGCTCT--CACACA--ATCCATCTCACCC---TTTGTGCACCACCGCGTGGGTC---CCTCTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTCGTCCAGAAGGGGGG-CTTGCGTTTT--AACACAAA--CT-TGAA-GTAGTGTAGAATGTCTTTTTTTT-----------GCGATAACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATTCTCAAAACCCTTTCTTT--GGTCTTTT--GATC-----------------GGGGAAAGGA----TTTTGGACTTGGAGGCCTTT-TGCTGGTTT--CAC----CTTGAA-GCGAGCTCCTCCCAAATGAATTAGTGGGGTCTGCTTTG-CCGATCCTTGGC-GTGATAAGTTGTTTCTACGTCTT-GGGTCTT-GGC-ACTGT-------ACACCTGCTTCTAACCGTC-TCAT-CGACAA---CGATG-GCGTTCCGGC-CACCGCCG---ATTACCATCGGT---GGGAGG-CTTGACCCACAAAATGAA-------CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Russula_mycorrhizal_type_ue53 ---------GAACCTGCGGAAGGATCATTATCGTA-CAACCGAGG-TGCGGAGGGCTGTCGCTGACCCCTTC--GAAGGTCGTGCACGCCCG-AGCGCTCT--CAC-CACAATCCATCTCACCCC--T{AT}TGTGCATCACCGCGTGGGTC-CGCCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------GGGAGGG-CCCACGTTTT--CACATAAAA-CT-TG-ATACAGTCTAGAATGTTTATTT{AT}T------------GCGGTAACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATTCTCAAAA-TCCTTTTCTTT----------GACC------------------GGAATAGGA---CTTTTGGACTTGGAGGTT-CAATGCTCGCTTTCGCC----TTTGAAAGTGAGCTCCTCTCAAATGAATTAGTGGGGTCCGCTTTG-CTGGTCCTTGAC-GTGATAAGATGTTTCTACGTTTT-GGATTT--GGC-ACTGTTTTCT------CCGCTCCTAACTGTC-TCGT-GGACAG---CGATG-GTGCTCCGGT-CGCCGCCG---TCT---AT-GGC---GGGAGG-C{CT}GGACCCACAAAGAA---------CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCTATAAGC------ Russula_mycorrhizal_type_ue73 ---GTAGGTGAACCTGCGGAAGGATCATTATCGTA-TAACGGAGG-TGT-AAGGGCTGTCGCTGACCTTT----AAAGGTCGTGCACGCCTA-AGCCCTCT--CACACA--ATCCATCTCACCCC-TTTTGTGCATCACCGCGTGGGTCCTCCCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCC--------AGGAGGG-CCTGCGTTTT--TATATAAAA-CT-TG-ACACGATGTAGAATGTTTTCTTTTT-----------GCAATTATATGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATTCTCAAA-GCCCTCTTTTCTTT--------GATCCTTTTTTT---GGGGTTTGGAAAAGGA---GTTTTGGACTTGGAGGTT-CAATGCTTGCCTTTCAC---TTTTGAAAGCAAGCTCCTCTCAAATAAATTAGTGGGGTCCGCTTTG-CTGATCCTTAAC-GTGATAAGATGTTTCTATGTTTT-GGATTT--GGC-ACTGTCCCTTGGATGCCTGCTTCTAACTGTC-TCAC-GGACAA---TGATG-GTGCTCCGGT-CACTACCA---TTT-ATATTGGT---GGAAGG-CTGGACCCAC{AC}AAAATAAAA-----CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Russula_ochroleuca -------------CTGCGGAAGGATCATTATTGTA-TAACCGAGG-TGC-GAGGGCTGTCGCTGACCC-----GAAAGGTCGTGCACGCCCG-AGTGCCCT--CACACAC-ATCCATCTCACCCC--TATGTGCACCACCGCGTGGGTC-CCCCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTTGTTC-GGAGGGGGG-CTTACGTTTT--CACACAAA--CTTTGTATGCAGTGTAGAATGTATTTTTTGTTTTT-------GCGAT--CACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATTCTCAAAAACCTTTTTCTTTTT------------------------------GGGAAAGGG---TTTTTGGACTTGGAGGCTTTT-TGCTGGCTT--CAC----CTTGAA-GTGAGCTCCTCCTAAATGAATCAGTGGGGTCCGCTTTG-CCGATCCTTGAC-GTGATAAGATGTTTCTGCGTCTTTGGGTTT--GGC-ACTGT--------CACCTGCTTCTAACTGTC-TCAT-TGACAA---TGATG-GTGCTCCGGT-CACCACCG---CTC-TTATCGGT---GGGAGG-CTTGACCCACAAAAACAAAA-----CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Russula_olivacea_ue085 --------------TGCGGAAGGATCATTATCGTG-CAACCGAGG-TGC-AAGGGCTGTCGCTGACCTTC----AAAGGTCGTGCACGCCCG-AGCGCTCT--CACACA--ATCCATCTCACCCC--TTTGTGCATCACCGCGAGGGTC---CCAGTGGCTGTAATGGCCCCAAGGTGGGAATGCGAGGCGATGTTCCCCTCAACGGAGTCCCGTGCTCGTGCGCCGCGTTCAAGACTGTCCCCTTCAGAAAACTTTGGTGTCCATCGTCCCCCCCAGCGTAGGCTGGGGTCGGATTTGGAGTAATCAGCCCTTGTCTAGCCAGGGAAGCAATTCCGCAGCTGGCAGGACTCACCGAGTTGGTCTTAGGAGATCAGGGCATGTCATCTGTCGCGCGGGTGCGCCGTGTCCCTCGTAGACCTTTTATACCTCGCGTTTT--CACATAAAA-CTATG-ATACAGTGTAGAATGTTATTTTACCTTTT-------GCGGTCACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATCATCAAAA-CCTTTTCTTT-----------GATCCTTTTT-------GGTCGGGAAAAGGA----TTTTGGACTTGGAGGTT-CCATGCTCGCTTTCT------TTCGAAAGCGAGCTCCTCTTAAATGAATTAGTGGGGTCCGCTTTG-CTGATCCTTGAC-GTGATAAGATGCTTCTACGTTTT-GGATTT--GGC-ACTGTCCCTTGGATGTCTGCTCCTAACTGTC-TCAT-GGACAA---TGATG-GTGCTCCGGT-CACCGCCG---TCT-ACGTTGGCGGGGGGAGG-CTGGACCCACAAAAAGAAAAAAAAACCTTGACCTC-------------------------------------------------- Russula_olivacea_ue138 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Russula_puellaris ------------CCTGCGGAAGGATCATTATCGTA-CAACCGAGG-TGC-GAGGGCTGTCGCTGACCTCC----AAAGGTCGTGCACGCCCG-AGCGCTCTCGCACAAA--ATCCATCTCACCCC--TTTGTGCATCACCGCGCGGGTCCCCCCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------AGGAGGG-CTCACGTTTT--CACACAAAA-TT-{CT}G-ATACAGTCTAGAATGTTTTGTTTTT-----------GCGGTCACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATCCTCAAAACCCCCTTTTCTTT---------CATC-----------------GGAACGGGGA----TTTTGGACTTGGAGGTT-CAATGCTTGCTTTTGCT----TTCAAAGGCGAGCTCCTCTTAAATGAATCAGTGGGGTCCGCTTTG-CTGATCCTTGAC-GTGATAATATGTTTCTACGTTTT-GGATCT--GGC-ACTGTTTTCT------CCGCTCCTAATCGTC-TCAT-TGACAA---TGATG-GTGCTTCGGTCCCCTGCCA---TCT-ACGTTGGC---GGGAGG-CTGGACCCACAAAAATAAAA-----CCTTGACCT--------------------------------------------------- Russula_queletii TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTAA-AACTGAGG-TGC-AAGGGCTGTCGCTGACTTTTTT------GTCGTGCACGCCCG-AGCGCTCT--CAAACA--ATCCATCTCACCC-----TGTGCACCACCGCGTGGGTC--CCCTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCTGTCTC-GAGGGGGG-CTTGCGTTTT--CACACAAA--CT-CG-ATACAGTGTAGAATGTCTCTT---------------GCAATAATATGCAATTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATTCTCAAAAGCCTTTCTTTTTAT--------------------------------GAAAGGG----TTTTGGACTTGGAGGCTTTT-TGCTGGCTTT-CAC----CTTGAAAGCAAGCTCCTCTCAAATGAATTAGTGGGGTCCGCTTTG-CCGATCCTTGAC-GTGATAAGATGTTTCTACGTCTC-GGGTTT--GGC-GATGCCTTTTGGGCACCTGCTTCTAACAGTC-TCAC-GGACAA---TGATG-GTGTCCCGGT-CACCGCCG---TTT--TATCGGTC--GGGAGG-CTTGGCCCACCAAAAAAA-------CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATAT-------------- Russula_raoultii TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTA-CAACCGAGG-CAC-GAGGGCTGTCGCTGACTTCTTT------GTCGTGCACGCCTG-AGTGCTCT--CACACA--ATCCATCTCACCCC--TATGTGCACCACCGCGCCGGTC--CCCTCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTTGTTCC-GAGGGGGGGCTTGCGTTTT--CACACAAA--CT-CGAA-GCAGTGTAGAATGTCTTTTTTTT-----------GCGATGACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATTCTCAAAAGCCCTTCCTTT-GGT------------------------------GGAGAGGA----TTTTGGACTTGGAGGTCTTT-TGCTGGCTT--CAC----CTTGAA-GCGAGCTCCTCCCAAATGGATTAGTGGGGTCTGCTTTG-CTGATCCTTGAC-GTGATAATATGTTTCTACGTCTT-GGGTTTCT-GC-ACTGT-------ACCTCTGCTTCTAACAGTC-TCTT-TGACAA---TGATG-GTGTTCCGGT-CACCGCCG---ATT--CGTCGGT---GGGAGG-CTTGACCCACAAAACGA--------CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCG----- Russula_sardonia -------------------------------------AACCGAGGCACG-AAGGGCTGTCGCTGACTTTTTT------GTCGTGCACGCCCG-AGTGCTCT--CAAACA--ATCCATCTCACCC---TATGTGCACCACCGCGTGGGTC-CCCCTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTCGTTCC-GAGGGGGG-CTTGCGTTTT--CACACAAA--CT-TAAATACAGTGTAGAATGTCTTTT---------------GCGATAACACGCAATTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATTCTCAAAAGCCTTTCTTTT-----------------------------------GAAAGGA----TTTTGGACATGGAGGCTTT--TGCTGGCTT--CAC----CTCGAA-GCCAGCTCCTCTTAAACGAATTAGTGGGGTCTGCTTTG-CCGATCCTCGAC-GTGATAAGATGTTTCTACGTCTG-GGGTTC--GGT-GATGTCTTTTGGGCACCTGCTTCTAATCGTC-TCAT-CGACAA---TGATG-GCGTTCCGGT-CACCGCCG---TTT--CATCGGTC--GGTCGG-CTTGACCCACCAAAAAAA-------CTTTGACCTCA------------------------------------------------- Russula_solaris TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTA-CAATCGAGG-TGC-AAGGGCTGTCGCTGACCTTC----AAAGGTCGTGCACGCCCG-AGTGCTCT--CACACA--ATCCATCTCACCCC-TTTTGTGCATCTCCGCGTGGGTC-CCCCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------GGGGAGGG-CTCGCGTTTT--CACATATAAACT-CG-ATACAGTCTAGAATGTATATTTTT------------GCGGTCACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATTCTCAAAA-CCCTTTTCTTT----------GATCCTTTTT-------GGTCAGGAATAGGA---CTTTTGGACTTGGAGGTT-CAATGCTCGCATTTGCT----TTTGAAAGCGAGCTCCTCTCAAATGAATTAGTGGGGTCCGCTTTG-CTGATCCTTGAC-GTGATAAGATGCTTCTACGTTTT-GGATTT--GGC-ACTGTTTTCTGGACGTCCGCTCCTAACTGTC-TCAC-GGACAA---TGATG-GTGCTCCGGT-CGTCGCCA---TTT-ACGTTGGC---GGGAGG-CTGGACCCACAAAAAA---------CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCA------------ Russula_veternosa TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTA-CAACCGAGG-TGC-GAGGGCTGTCGCTGACCTTTA---AAAGGTTGTGCACGCCCA-AGTGCTCT--CACAC---ATCCATCTCATCCCC-TTTGTGCATCACCGCGTGGGCC-CCCCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------AGGAGGG-CTTGCGTTTT--CACATAAAA-CT-TG-ATACAGTATAGAATGTTTTTCTTTT-----------GCGGTCACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATCATCAAAAACCCCTTTCTTT----------GATCCCTTTC-----GTGGTCAGGAAAAGGGA--TTTTTGGACTTGGAGGTTTTCATGCTTGCTTTTGCT----TTCAAAAGTGAGCTCCTCTTAAATGAATTAGTGGGGTCTGCTTTG-CTGGTCCTTGAC-GTGATAAGATGCTTCTACGTTTT-GGATTT--GGC-ACTGTCCCTCGGACGCCTGCTTTTAACTGTC-TCTTGAGACAA---TGATG-GTGCTTCGGT-CACCGGCCAAATCT-ACATTGGC-GGGAAAGG-CTGAACCCACAAAATGAAAGA----CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATAT-------------- Russula_vinosa TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTA-CAACTGAGG-TGC-AAGGGCTGTCGCTGACCCTTC---AAGGGTCGTGCACGCCCA-AGCTCTCT--CACAC---ATCCATCTCACCCC--TTTGTGCATCACCGCGTGGGCC-CCCCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------AGGAGGG-CTTGCGTTTT--CACATAAAA-CT-TG-ATACAGTGTAGAATGTTTTTTCTTTT----------GCGGTCACACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATCATCAAAA-CCTTTTCTTT-----------GATCCTTTTT-------GGTCAGGAAAAGGA---TTTTTGGACTTGGAGGTT-CCATGCTTGCTTTTGCT----TATGAAAGTGAGCTCCTCTCAAATAAATTAGTGGGGTCTGCTTTG-CTGATCCTTGAT-GTGATAAGATGTTTCTACATTTT-GGATTT--AGC-ACTGTCCCTTGGACGCCTGCTCCTAACTGTC-TTTT-GGACAA---TGATG-GTGCTTCGGTTTGCCGCCA---TTT-ATGTTGGC---GGGAGG-CTGAACCCACCAAAAAAAAAA----CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAAT---------- Russula_xerampelina TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTA-CAACTGAGG-CGC-AAAGGCTGTCGCTGACCCTC----AAGGGTTGTGCACGCCCG-AGTGCTCT--CACACA--ATCCATCTCACC----TTTGTGCATCACCGCGTGGGTC--TCCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------GGGAGGG-CTCACGTTTT--CACATAAAA-CT-CG-ATACAGTGTAGAATGTTTCTTTT-------------GCGGTCGCACGCAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAAATCTTCAAAAACCCTTTTTTCTTT--------GAACCATT-------GTGGTCGGAAAAAGGA---TTTTTGGACTTGGAGGCTTTAATGCTTGCCCTTTCTTTTCTTTGAAAGCGAGCTCCTCTCAAATGAATTAGTGGGGTCCGCTTTG-CTGATCCTTGAC-GTGATAAAATGTTTCTACGTTTT-GGGTTT--AGC-ACTGTCCCTTGGATGCCTGCTGCTAACCGTC-TCAT-TGACAA---TGATG-GTGCTCCGGT-CACTGCCG---TCT-ACGTCGGC---GGGAGG-CTGGACCCACAAAAAGAAAA-----CCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAAT---------- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'ITS Figs. 5-6') = N: 1-1053; CODONPOSSET CodonPositions (CHARACTERS = 'ITS Figs. 5-6') = N: 1-1053; END; [ The following blocks are output data for analysis step 1387 ] BEGIN TREES; TITLE Tb6163; LINK TAXA = TaxaForAnalysisStep1387; TREE 'Fig. 5-6' = [&R] (Russula_olivacea_ue138,(Russula_olivacea_ue085,(((Russula_decolorans,((Russula_integra,Russula_vinosa),(Russula_veternosa,Russula_firmula))),Russula_caerulea),((Russula_xerampelina,(((Russula_lepida,Russula_mycorrhizal_type_ue73),((((Russula_fellea,Russula_atropurpurea),((Russula_emetica,Russula_mairei),Russula_raoultii)),(((Russula_fuscorubroides,Russula_queletii),Russula_sardonia),(Russula_exalbicans,Russula_cavipes))),Russula_ochroleuca)),Russula_amethystina)),(Russula_puellaris,(Russula_solaris,Russula_mycorrhizal_type_ue53)))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5662] END;