#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 22, 2024; 8:16 GMT TreeBASE (cc) 1994-2008 Study reference: Nabeel-shah S., Ashraf K., Pearlman R.E., & Fillingham J.S. 2014. Molecular evolution of NASP and conserved histone H3/H4 transport pathway. BMC Evolutionary Biology, 14(139). TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15931] [ The following blocks are input data for analysis step 13874 ] BEGIN TAXA; TITLE TaxaForAnalysisStep13874; DIMENSIONS NTAX=52; TAXLABELS 'Albugo_laibachii' Apis_florea Arabidopsis_thaliana Bombus_terrestris Bos_taurus Caenorhabditis_brenneri Caenorhabditis_briggsae Caenorhabditis_elegans Caenorhabditis_remanei Candida_albicans Capsella_rubella Choanoflagellida_kent Cicer_arietinum Ciona_intestinalis Coccidioides_immitis Cryptococcus_gattii Danaus_plexippus Danio_rerio Dictyostelium_fasciculatum Drosophila_erecta Drosophila_melanogaster Drosophila_sechellia Gallus_gallus Halocynthia_roretzi Homo_sapiens Ichthyophthirius_multifiliis Maylandia_zebra Megachile_rotundata Mus_musculus Neospora_caninum Neurospora_crassa Orcinus_orca Oreochromis_niloticus Paramecium_tetraurelia Plasmodium_yoelii Saccharomyces_cerevisiae Salmo_salar Schizosaccharomyces_japonicus Schizosaccharomyces_pombe Taeniopygia_guttata Takifugu_rubripes Tetrahymena_thermophila Tetrapisispora_phaffii Thalassiosira_pseudonana Theobroma_cacao Toxoplasma_gondii Tribolium_castaneum Trichosporon_asahii Trypanosoma_brucei Trypanosoma_cruzi___ Xenopus_laevis Xenopus_tropicalis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M22676] TITLE 'NASP TPRs 1-4'; LINK TAXA = TaxaForAnalysisStep13874; DIMENSIONS NCHAR=136; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 ] [ . . . . . . . . . . . . . ] 'Albugo_laibachii' QDPRFQRGLCLLKEHDYEAAVTIFEDLLKTKVELAPIYYEYGNALLSLVELELAWEMLEVARVIYTRHARVYMRLGDLSMESENFTRAKQDYENSLVLNKKIADLYCCLAISCIYQDPSQPQINLDQGCTDEAPVE Apis_florea PATAISHGKRHLLVRDYTMAVTALAQACQLLAEKGEPYLLYGRALLGLARLQVAWEVLELAKLVLLKRADAYRLLGEVAMEGGNFQGALNDLHRCLDLLQQIAEIHYQLALAHSLGNEFDASIEEFNKATELLETR Arabidopsis_thaliana AEELTEKGSVFLKENDFAEAVDCFSRALEIRVAHINAYYRYGLALLAKAQLDMAWKMLDIARVITDKQVDILCSLAEVSLEREDIESSLSDYKNALSILERLAELNFRICICLETGCQPKEAIPYCQKALLICKAR Bombus_terrestris AATAISHGKRHLLVRDYTMAVTALAQACQLLAEKGEPYLLYGRALLGLARLQVAWEVLELAKLVLLKRSDAYRLLGEVAMEGGNFQGALNDLHRCLELLQQIAEIHYQLALAHSLGNEFDASIEEFNKATELLDSR Bos_taurus AKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKKGEAFFFYGKSLLELARLELAWDMLDLAKIIFKRQAQAHLKLGEVSVESENYLQAVEEFQACLNLQEQYAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEKR Caenorhabditis_brenneri LSELLTAGRRAIRVNNIEEASEILSQATELSTEIFDAYYFYGMATLELAKMRLAWELLETCRCIAIVKADVLVLLGEHGVSDGKYDQAKEDLEKALEIQKNVSQTYILMANACSNAMNFEEAVALYQKTKESLLHR Caenorhabditis_briggsae AAELLAAGRRALKVSDYETATEALSEASEMIVELYEYYYYYGMATLELGKMKLAWEVLENARCIAMAKADVLVVLGDHSVSDGKYDQALEDLEQALEIQKNVAQTYILMADACTSGMNYDEAINYFEKTKETLKSR Caenorhabditis_elegans LAELLAAGRRALKVNDIDKASDSLSEATELSSEIFDSLYYYGMATLELAKMKLSWEILETARCIAAAKADVLVLLGEHGISDGKYTQAFEDLDRALNIQRNVAQTYILIGNACASDANYDETVQYFGKTKDVLIAR Caenorhabditis_remanei LAELLANGRRELRVNNNAEASEILSEAAELSVEIFDACYYYGMASLEVAKMKLAWELLETARCTAAAKADVLILLGDHGIADENYEQAREDLGRALGIQQNIAQTYILMASACSSSMNFTDAVTFYKRTKDTLVAR Candida_albicans VAKLISEGSRAYSSKDFDLASEKYGEACEEYSKSAEILFLYGRALFKVGQLAVAFQVLDLAVLFEKKLSETYDILGEVSLEAENFNQAADDLRKCLELRLELSESHYKLALALEFQSDDKNAAEQMKLAIESVERR Capsella_rubella ADELTEKGSVFLKEQDFGEAVDCFSRALEIRVEHVNAYYRYGSALLEKAQLDMAWKMLDIARAITDKQVDILCALAEISLEREDIESSLSDYKKALSILERLAELNFRICICLETGCQPKEAMPYCQKAMLICKAR Choanoflagellida_kent AEVFAAAKSLYHKDEVDQAGAILSDLLETMVEQFARVYQLYGLCLIASARVQVGWECLECARVIYSRLADVHFELGSVYLETDQYREAEEELEQCVALRRKWAQALFQLGIAHRQLKQSQKAIAAFSEAVDILDAL Cicer_arietinum ADELMDKENKAMKDNDYGEAADNYSRALEIRVGHVHTYYKYGCALLYKAQLDLAWKMLDIARAIVEKQVDILSTLGDVALEREDFETSLSDYQKALSILEQLADLNFRICLCLEVGSRPEEAVAYCEKATSVCKAR Ciona_intestinalis YAINLANGKKNLLCGDFPEAVACFQATSALQSERAESFYFYGKALLELARMQLAWEMLELAKVLYQKKAQCHSKLGELGLEVENYSQSIGDFLESLVIHKELAETHYNLGLAYTFDKRYDNALEHYTASLNVLDAR Coccidioides_immitis AELKRLASAKEAIKDYNSAADLYSRAVEIQAELNRNVLWLYGRTLFEIALFGLAWEVLDLCRVLQTRASDIYDLQAEISLEGERFSEAVSDLRAALKLKRELAECHYKLSLALEFSSVRAEAAKHMEAAIQCCKLR Cryptococcus_gattii VEKLVAEGKKAIALHEWEQGVDRYATALDRMRLLAPLLLAYGKALYDLASYNAAWEVLDVARTIYQKISDCYLALGNVSCETENFSQAVQDFTAAVDIQNTIASAHYQLATALEFTPSRTSALTHVESALSSLVRR Danaus_plexippus PEELLAAGRRHLAVRDYTSAAETLATACELLAKTAEAYLWYGKSLLGLSRLQLAWEMLDLSRNILQKRAEVHLALGEVALESETYDKAVADMISCLDIQKELAETHYQIGLANSLASNFEDAITHFKNAANILETR Danio_rerio AKKLIGTGSRHLVMGDVVSAVSVFQEACAMLAEKGEAFFFCGKALLELARLRLAWEMLEVAKVIYKRKAQIHLKLAEVGVESGNYSQALEDSNECLTLQLKHTETHYQLGTTYSYTTQYNQAIEHFSNSIKVIESR Dictyostelium_fasciculatum MGKVKAAKALLDDQDYLSACELLGSSLSALSPIYAPIYIKYGRALLFSYKLEVAWDVLELARVIYEKNSDVHMLLGDLNVELENHQDALEEYNIALQLRKKQAEVYYYIGMVYQIKNDAKFAEDSYKKAIEILTGA Drosophila_erecta GKELFSQGSRNFLVKSYDEAADELSQVCQLYEEVGQPLLLYAKALIAMALLQLAWEILEAAAQIFSRQAEVQTELANIEFENGILEAAREDYEKALKIHGELAELHYKIGLTYLMQQLNKEGATALRHSSVLIEEE Drosophila_melanogaster GKELFSQGSRNFLVKSYDEAADELSQVCQLYEEVGQPLLLYAKALIAMALLQLAWEILEAAAQIFSRQAEVQTELANIEFENGILEAAREDYEKALKIHGELAELHYKIGLTYLMQQLNKEGATALRQSSVLIEEE Drosophila_sechellia GKELFSQGSRNFLVKSYDEAADELSQVCQLYEEVGQPLLLYAKALIAMALLQLAWEILEAAAQIFSRQAEVQTELANIEFENGILEAAREDYEKALKIHGELAELHYKIGLTYLMQQLNKEGATALRQSSVLIEEE Gallus_gallus SKKLLGLGQKHLVMGNIPAAVNAFQEAASLLGKKAEAFFYYGKSLLELARLELPWDMLELAKVIYKRQAQAHLKLGEVSIESENYVQAIEEFQACLALQQKYAESHYQLALAYHYNSQFDEAVLQFGKSVEVIDKR Halocynthia_roretzi IQECMGAGKKDLLCNDYSEAVNCFQEACTLLSGKCEAYYYYGVSLLELARMQLAWEMLELAKVLYKKHAQCHLKLGELGLEVENHPQAIGDFLECLVIQKDLAETYYNLGLAYSFEKRYDNALEHYQSALDVLEAR Homo_sapiens AKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKKGEAFFFYGKSLLELARLELAWDMLDLAKIIFKRQAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIENR Ichthyophthirius_multifiliis LEQQIEKVKEHIRKNEFESAEEIFSDLMIDAVKYSKYYYYYGDMLLTKQDLQLAWENLELCKKIIYKNVQVTLRLGDLEAWRDSLKDSVEQYTEALNIAFQISSIYFQLGNSLLYENKEFCEENSLKNFIQSAQIL Maylandia_zebra AKKLIGTGKRHLVMGDVVSAVNVFQEACSMLAEKGEAFFLCGKSLLELARLQLAWEMLEVAKVIYKRKAQAYLKLGEVSAESGNYPQALDDFQECLALQLKYAETHYHVATTLCYMDQYSQAIQHYNSSIKVIETR Megachile_rotundata PATAISHGKRHLLVRDYTMAVTALAQACQMLVEKGEPYLLYGRALLGLARLQVAWEVLELAKLVLLKRADAYRLLGEVAMEGGNFQGALNDLHRCLELLQQIAEIHYQLALAHSLGNEFDASIEEFNKATELLEAR Mus_musculus AKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKKGEAFFFYGKSLLELARLELAWDMLDLAKIIFKRQAQAHLKLGEVSVESENYIQAVEEFQACLSLQEQYAETHYQLGLAYGYNSQYDEAVAQFGKSIDVIEKR Neospora_caninum AETLLDEGKALFRSRNWAKAAEYFSRAVERKVTESTYYLWFGDALLTKEEEELAFEMLEMAKRCLLKKSFAYVRLADMQLMNERYDEAAQDYREAVSLRERYAQATFFSGKKKAALDVFKRTLSIGKQIKEGELGM Neurospora_crassa LADLSAHAAAQYAQKNYDEAAELYAQAAEMQAEMAEILFLYGRALFKVGQLAVAFQVLDLAVLFEKKLGDLHDLLAEISLENERYPAAITDSRASLKYKQQLAEAHFKLSLALEFASVTDEAAAELEAAIASTKLK Orcinus_orca AKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKKGEAFFFYGKSLLELARLELAWDMLDLAKIIFKRQAQAHLKLGEVSVESENYIQAVEEFQACLNLQEQYAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEKR Oreochromis_niloticus ANKLIGTGKKHLVMGKVVEAVSTLQEACGMLAKKGEAFFWYGKALLDLARLQLAWEMLEVAKVIYKRKAQAHLKLGEVSAESGNYPQALEDFQECLKLQVKHAETHYQLGVTYSLNTQYSEAIESLKSSISIIKNR Paramecium_tetraurelia AKELFNEGKHNEAEVMMQGVMQQALAYYKDELAVAEYYYMYGTIIVLKLSFHIAWENLEVARVILEKEAKVYIKLAELDQWRDKFDDAQENLQKSLQLRLQCAETYFFLGNVTLYNYKEGKEEEALGFYLKALQIL Plasmodium_yoelii AQELFDMGNLEFKESKNYDVAAERFSMAVEKKVKREYYLCFADALLTKEEEQLAFEMFEFSRKCYEMLSYVFIRLGDISLLNHFFEEALKEYEKCVNLREEHSQSYMFCGKRKEAVEYFEKVKKILLDVRQKTTPL Saccharomyces_cerevisiae MERQVQIAKDLLAQKKFLEAAKRCQQTLDSLPKDPELFTIFAQAVYNMEVYENALDLLAQALMLLGRPGDVYILMGDIEREAEMFSRAIHHYLKALGYYKTLIQAEFLVCDALRWVDQVKDKLKRFKHAKALLEKH Salmo_salar ANKLIGTGKRHLVMGDVVSAVNYLQEACGMLAKRGEAFFLCGKALLELARLQLAWEMLEVAKVIYKRKAQAHLNLGEVAAESGNYSQAVDDFQQCLSLQLKHAETHYQLGLTLCSDCQYSQAIEHFNHSARVIKSR Schizosaccharomyces_japonicus IDQLVVQGNKAFSQKHYEIAAEKYSDALEVLEQKRNVLWLYGRTLFEIALFGLAWEVLDLCRVLQTRAADVLDLLGEISLENESFEQAAQDLQEALLWKQQVSEAHYKLALALEFTALEKEALKHVEAAADIIQHV Schizosaccharomyces_pombe IEQLVTQGNMAYAQKNYEEAVDKYGQALMQSESIRNVLWLYGKSLFQIAIDFNVAWEVLDLTRVMQSKADIYDLLGELSLEIENFSQASQDLKTALEWKEKVSEAHYKLALALEFTNPKSRACEHVEKAAEILKNV Taeniopygia_guttata SKKLLGLGQKHLVMGNIPAAVNAFQEAASLLGKKAEAFFYYGKSLLELARLELAWDMLELAKVIYKRQAQAHLKLGEVSIESENYTQAIEEFQACLALQQKYAESHYQLALAYHYNSDFDEAVLQFGKSMEVIDKR Takifugu_rubripes AKKLVGAGNKYLVLGDVVSAVAVFQDACSMLAAKGEALFLCGKSLLELARLQLAWEMLEVAKVIYKRKAQIYLKLGEVSAESGNYPQALEDFQECLCLQLKHAETHYHVATTLCYMDKYSQAIQHYNSSIEVIEKR Tetrahymena_thermophila LESRLTEAVECYKNKNFDQAENIFSDLMIYAVKFSKYFFFYGDMLLSKLELQLAWENLELSRKIYNQEVEVTLRIADLEQWRDNFSDALKEYTMALQLSKEISSIFFQLGNAVLYENKEYCEEEGLKNFIDSAQIL Tetrapisispora_phaffii IKTLVVEGAKYTANSDLANASKCYAELLDLESKTPDHVMLLASCLYQLGVFQNTLELLQVARIIYMENGDVDQEVEDFATAVEDYKQAIDYIKETDEFENENLTTSLKLIEALRWLTDTKDKHKEILNSTQILLKK Thalassiosira_pseudonana SLPSHALAKQYLNTGQFNQALEVLEESLGEMHERAPLYYLYGTTLLYLVELQIAWENLETARSIMSKMAKVHSRLGDLQKANGNSTGSISDYIISLSIRAKCADAHFSLAQAYVEAPNSQARMEDEAAGIEKSCDH Theobroma_cacao ADELAEKGSKAFKENDFAEAADCFSRALEIRVAHLKAYYLYGRALLYKAQLDLAWKMLDVARAIADKQVDILSALAEVALEREDIESSLSDYQKALSILQQLAELNFRICMCLEIGSKPQEAIPYCQKAISVCRSR Toxoplasma_gondii ADTLLGEGKTVFRSRNWAKAAEYFSRAVERKVAESTFYLWFGDALLTKEEEELAFEMLEMAKQCLLKKSFAFVRLADMQLMNERYDEAAQDYGEAVSLRERYAQATFFSGKKKAALDVFKRTLAIGKKIKDGFLGM Tribolium_castaneum PKELFGQGVRAYVLQDFDTAVKAFSKASELLAAEGDVYLYYGKSLLELSRLQVAWEVLELAKRIFTNRAETLIVLGEISLESGNFTSAIEDMTQGLEIQKTLAETCYKLGGAYSTNGQIDEAIASFNSSYEYLQNK Trichosporon_asahii VAKLVSEGKKAIALRQWEEGVGKYADALDLQRELAPLLLSYGKALYELALDFNAAWEVLDVARTIYTRSECYLALGDVSCETENFDQAVKDYEAAVKLKASLASAEYQLGTALEFTSGRPAALVHVQAALDGFKAR Trypanosoma_brucei AVAMRAVGLELFNKHNYEEALDVQYRIVRYFENKGIYFLDYGLSQLRMIQLEACFTNLDVARVCFQKQAEVHNAIAQVQVEREAYEEALKEYESELFIYRYLAAVLYEIADCYMKEGDFEGAEERFIKAIEEIEKF Trypanosoma_cruzi___ ANEARAVGIAHYNNHRYEDALDIQYRVVRHFEKKGVYFLDYGLSQLRVLQLEACFINLDVARVCFQKQAEVHNSIAQLQVEREDFDSALKEYESELMTYRFIAAVLYGIADCYMKEGDFEGAEERFQAALDELASF Xenopus_laevis AKRLMGAGQKHLVMKDVRSAVNLFQEASSLLAKQAEAFYSYGMSLLELARLQLAWEMLDLCKIIFKRQAQAHQKLGEVCIESENYSQAVEDFLACLNIQKEHAETHYHLGLAYQYSSKHEEAISHFTQSIGVIEKR Xenopus_tropicalis AKKLMATGQKHLVMKDVRSAVTSFQEASSLLAKKADAFYSYGMSLLELARLQLAWEMLDLCKLIFKRQAQAHLKLGEVSVESENYSQAVEDFLACLNIQKEHAETNYHLGLAYQYSSKHEDAISHFTQSVGVIEKR ; END; [ The following blocks are output data for analysis step 13874 ] BEGIN TREES; TITLE NASP_temnamefinalstage3.1danio; LINK TAXA = TaxaForAnalysisStep13874; TREE Phylogenetic_tree_of_NASP_proteins = [&R] ((Trypanosoma_cruzi___:0.1665445592234616,Trypanosoma_brucei:0.08814563621562485):0.48510804139614294,((Choanoflagellida_kent:0.6522961548740813,Dictyostelium_fasciculatum:0.6097492572443476):0.3159185132667026,(('Albugo_laibachii':0.387901621053916,Thalassiosira_pseudonana:0.7945508109885409):0.2769280737627367,((Paramecium_tetraurelia:0.7373041799045686,(Tetrahymena_thermophila:0.1694235948585754,Ichthyophthirius_multifiliis:0.2689747277571397):0.3236084417423718):0.2720449026633494,(Plasmodium_yoelii:0.6137491837464163,(Neospora_caninum:0.02009145961189211,Toxoplasma_gondii:0.06840036956387648):0.3900357705339729):0.5960138709974103):0.1289080969440818):0.2003603509425059,(((Cicer_arietinum:0.1266532202084106,(Theobroma_cacao:0.04553430666937051,(Arabidopsis_thaliana:0.03856311587407731,Capsella_rubella:0.0434315583954015):0.1574543664633805):0.07528115563306596):0.5557664039136903,(((Trichosporon_asahii:0.3825932102476613,Cryptococcus_gattii:0.1247082487338427):0.3045413575336506,(Saccharomyces_cerevisiae:0.7661672628917506,Tetrapisispora_phaffii:0.8104540327095645):0.4708437653101705):0.1092381198017939,((Candida_albicans:0.2609338123928168,Neurospora_crassa:0.3855571010626089):0.2181238428560035,(Coccidioides_immitis:0.5286794932729995,(Schizosaccharomyces_pombe:0.4520081917526163,Schizosaccharomyces_japonicus:0.1150200335696581):0.08859368080312387):0.162678754347316):0.1760617578803242):0.205598055592483):0.09354700763942127,((Caenorhabditis_briggsae:0.07839412988853396,(Caenorhabditis_elegans:0.1551024556773978,(Caenorhabditis_remanei:0.1864599145308828,Caenorhabditis_brenneri:0.1352391611133363):0.05985865084427276):0.1224185300489805):0.5014118884849221,(Danaus_plexippus:0.2766764245442401,(Tribolium_castaneum:0.3755591474141803,(Bombus_terrestris:0.02246711123344751,Megachile_rotundata:0.01998132207349974,Apis_florea:0.01049280266862013):0.4317770763445888,(Drosophila_melanogaster:0.003828370396424802,Drosophila_sechellia:0.003780349379197412,Drosophila_erecta:0.007911714674118669):0.7514455019696924):0.1101660940420448,((Halocynthia_roretzi:0.1086829312739408,Ciona_intestinalis:0.213945258958453):0.2340086413715203,((Oreochromis_niloticus:0.1350663615410138,(Danio_rerio:0.09361866866536325,(Salmo_salar:0.1172191986874317,(Takifugu_rubripes:0.09938423445037262,Maylandia_zebra:0.01080582360041087):0.0792709435194973):0.03118954523078102):0.03307360614305065):0.1191629574986793,((Xenopus_laevis:0.03768040562449886,Xenopus_tropicalis:0.04624825224554874):0.1239789613833131,(Homo_sapiens:0.01810140809959602,Bos_taurus:0.008116867418257134,Orcinus_orca:0.004006161916265358,(Mus_musculus:0.01085568303238872,(Gallus_gallus:0.01132136522289994,Taeniopygia_guttata:0.01897016585029131):0.1207509256771158):0.01452571157474789):0.1173100156746577):0.08118304158322845):0.0897942010339787):0.1148741576772608):0.09423449684982046):0.1005193967402742):0.1712550614561321):0.48510804139614294); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr75403] END;