#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 22, 2024; 16:50 GMT TreeBASE (cc) 1994-2008 Study reference: Nabeel-shah S., Ashraf K., Pearlman R.E., & Fillingham J.S. 2014. Molecular evolution of NASP and conserved histone H3/H4 transport pathway. BMC Evolutionary Biology, 14(139). TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15931] [ The following blocks are input data for analysis step 13901 ] BEGIN TAXA; TITLE TaxaForAnalysisStep13901; DIMENSIONS NTAX=52; TAXLABELS Albugo_laibachii Apis_florea Arabidopsis_thaliana Bombus_terrestris Bos_taurus Caenorhabditis_brenneri Caenorhabditis_briggsae Caenorhabditis_elegans Caenorhabditis_remanei Candida_albicans Capsella_rubella Cicer_arietinum Ciona_intestinalis Coccidioides_immitis Cryptococcus_gattii Danaus_plexippus Danio_rerio Dictyostelium_fasciculatum Drosophila_erecta Drosophila_melanogaster Drosophila_sechellia Gallus_gallus Halocynthia_roretzi Homo_sapiens Ichthyophthirius_multifiliis Maylandia_zebra Megachile_rotundata Mus_musculus Neospora_caninum Neurospora_crassa Orcinus_orca Oreochromis_niloticus Paramecium_tetraurelia Plasmodium_yoelii Saccharomyces_cerevisiae Salmo_salar_Nasp Schizosaccharomyces_japonicus Schizosaccharomyces_pombe Taeniopygia_guttata Takifugu_rubripes Tetrahymena_thermophila Tetrapisispora_phaffii Thalassiosira_pseudonana Theobroma_cacao Toxoplasma_gondii Tribolium_castaneum Trichosporon_asahii Trypanosoma_brucei Trypanosoma_cruzi_Nasp Xenopus_laevis Xenopus_tropicalis choanoflagellida_Salpingoecidae ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M22742] TITLE NASP_TPR1; LINK TAXA = TaxaForAnalysisStep13901; DIMENSIONS NCHAR=34; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 ] [ . . . ] Albugo_laibachii QDPRFQRGLCLLKEHDYEAAVTIFEDLLKTKVEL Apis_florea PATAISHGKRHLLVRDYTMAVTALAQACQLLAEK Arabidopsis_thaliana AEELTEKGSVFLKENDFAEAVDCFSRALEIRVAH Bombus_terrestris AATAISHGKRHLLVRDYTMAVTALAQACQLLAEK Bos_taurus AKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKK Caenorhabditis_brenneri LSELLTAGRRAIRVNNIEEASEILSQATELSTEI Caenorhabditis_briggsae AAELLAAGRRALKVSDYETATEALSEASEMIVEL Caenorhabditis_elegans LAELLAAGRRALKVNDIDKASDSLSEATELSSEI Caenorhabditis_remanei LAELLANGRRELRVNNNAEASEILSEAAELSVEI Candida_albicans VAKLISEGSRAYSSKDFDLASEKYGEACEEYSKS Capsella_rubella ADELTEKGSVFLKEQDFGEAVDCFSRALEIRVEH Cicer_arietinum ADELMDKENKAMKDNDYGEAADNYSRALEIRVGH Ciona_intestinalis YAINLANGKKNLLCGDFPEAVACFQATSALQSER Coccidioides_immitis AELKRLASAKEAIKDYNSAADLYSRAVEIQAELN Cryptococcus_gattii VEKLVAEGKKAIALHEWEQGVDRYATALDRMRLL Danaus_plexippus PEELLAAGRRHLAVRDYTSAAETLATACELLAKT Danio_rerio AKKLIGTGSRHLVMGDVVSAVSVFQEACAMLAEK Dictyostelium_fasciculatum MGKVKAAKALLDDQDYLSACELLGSSLSALSPIY Drosophila_erecta GKELFSQGSRNFLVKSYDEAADELSQVCQLYEEV Drosophila_melanogaster GKELFSQGSRNFLVKSYDEAADELSQVCQLYEEV Drosophila_sechellia GKELFSQGSRNFLVKSYDEAADELSQVCQLYEEV Gallus_gallus SKKLLGLGQKHLVMGNIPAAVNAFQEAASLLGKK Halocynthia_roretzi IQECMGAGKKDLLCNDYSEAVNCFQEACTLLSGK Homo_sapiens AKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKK Ichthyophthirius_multifiliis LEQQIEKVKEHIRKNEFESAEEIFSDLMIDAVKY Maylandia_zebra AKKLIGTGKRHLVMGDVVSAVNVFQEACSMLAEK Megachile_rotundata PATAISHGKRHLLVRDYTMAVTALAQACQMLVEK Mus_musculus AKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKK Neospora_caninum AETLLDEGKALFRSRNWAKAAEYFSRAVERKVTE Neurospora_crassa LADLSAHAAAQYAQKNYDEAAELYAQAAEMQAEM Orcinus_orca AKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKK Oreochromis_niloticus ANKLIGTGKKHLVMGKVVEAVSTLQEACGMLAKK Paramecium_tetraurelia AKELFNEGKHNEAEVMMQGVMQQALAYYKDELAV Plasmodium_yoelii AQELFDMGNLEFKESKNYDVAAERFSMAVEKKVK Saccharomyces_cerevisiae MERQVQIAKDLLAQKKFLEAAKRCQQTLDSLPKD Salmo_salar_Nasp ANKLIGTGKRHLVMGDVVSAVNYLQEACGMLAKR Schizosaccharomyces_japonicus IDQLVVQGNKAFSQKHYEIAAEKYSDALEVLEQK Schizosaccharomyces_pombe IEQLVTQGNMAYAQKNYEEAVDKYGQALMQSESI Taeniopygia_guttata SKKLLGLGQKHLVMGNIPAAVNAFQEAASLLGKK Takifugu_rubripes AKKLVGAGNKYLVLGDVVSAVAVFQDACSMLAAK Tetrahymena_thermophila LESRLTEAVECYKNKNFDQAENIFSDLMIYAVKF Tetrapisispora_phaffii IKTLVVEGAKYTANSDLANASKCYAELLDLESKT Thalassiosira_pseudonana SLPSHALAKQYLNTGQFNQALEVLEESLGEMHER Theobroma_cacao ADELAEKGSKAFKENDFAEAADCFSRALEIRVAH Toxoplasma_gondii ADTLLGEGKTVFRSRNWAKAAEYFSRAVERKVAE Tribolium_castaneum PKELFGQGVRAYVLQDFDTAVKAFSKASELLAAE Trichosporon_asahii VAKLVSEGKKAIALRQWEEGVGKYADALDLQREL Trypanosoma_brucei AVAMRAVGLELFNKHNYEEALDVQYRIVRYFENK Trypanosoma_cruzi_Nasp ANEARAVGIAHYNNHRYEDALDIQYRVVRHFEKK Xenopus_laevis AKRLMGAGQKHLVMKDVRSAVNLFQEASSLLAKQ Xenopus_tropicalis AKKLMATGQKHLVMKDVRSAVTSFQEASSLLAKK choanoflagellida_Salpingoecidae AEVFAAAKSLYHKDEVDQAGAILSDLLETMVEQF ; END; [ The following blocks are output data for analysis step 13901 ] BEGIN TREES; TITLE NASP_TPR1_MLT; LINK TAXA = TaxaForAnalysisStep13901; TREE Imported_tree_0 = [&R] (((((((((((((Homo_sapiens,Bos_taurus)0.2090,(Mus_musculus,Orcinus_orca)0.2080)0.7030,(Gallus_gallus,Taeniopygia_guttata)0.8890)0.9920,(Xenopus_laevis,Xenopus_tropicalis)0.8080)0.6260,(Takifugu_rubripes,((Salmo_salar_Nasp,Oreochromis_niloticus)0.7790,(Danio_rerio,Maylandia_zebra)0.6120)0.4780)0.6090)0.8340,(Halocynthia_roretzi,Ciona_intestinalis)0.6080)0.4110,Tribolium_castaneum)0.1620,(((Drosophila_sechellia,Drosophila_erecta)0.3450,Drosophila_melanogaster)0.9680,((((Megachile_rotundata,Apis_florea)0.4490,Bombus_terrestris)0.9600,Danaus_plexippus)0.4100,(Caenorhabditis_briggsae,(Caenorhabditis_elegans,(Caenorhabditis_remanei,Caenorhabditis_brenneri)0.6090)0.8030)0.7850)0.1560)0.1330)0.0990,(((Schizosaccharomyces_pombe,Schizosaccharomyces_japonicus)0.5100,Neurospora_crassa)0.0990,(Candida_albicans,(Tetrapisispora_phaffii,(Trichosporon_asahii,Cryptococcus_gattii)0.9650)0.2530)0.0810)0.0810)0.0190,(Saccharomyces_cerevisiae,Thalassiosira_pseudonana)0.2240)0.0400,(((Tetrahymena_thermophila,Ichthyophthirius_multifiliis)0.8010,Albugo_laibachii)0.2630,((Neospora_caninum,Toxoplasma_gondii)0.9800,(Cicer_arietinum,(Theobroma_cacao,(Arabidopsis_thaliana,Capsella_rubella)0.8210)0.7400)0.7620)0.4120)0.0710)0.0760,((Paramecium_tetraurelia,Plasmodium_yoelii)0.6700,(choanoflagellida_Salpingoecidae,(Coccidioides_immitis,Dictyostelium_fasciculatum)0.3800)0.8460)0.2120)0.8600,(Trypanosoma_cruzi_Nasp,Trypanosoma_brucei)0.8600); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr75485] END;