#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 22, 2024; 15:06 GMT TreeBASE (cc) 1994-2008 Study reference: Nabeel-shah S., Ashraf K., Pearlman R.E., & Fillingham J.S. 2014. Molecular evolution of NASP and conserved histone H3/H4 transport pathway. BMC Evolutionary Biology, 14(139). TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15931] [ The following blocks are input data for analysis step 13903 ] BEGIN TAXA; TITLE TaxaForAnalysisStep13903; DIMENSIONS NTAX=52; TAXLABELS Albugo_laibachii Apis_florea Arabidopsis_thaliana Bombus_terrestris Bos_taurus Caenorhabditis_brenneri Caenorhabditis_briggsae Caenorhabditis_elegans Caenorhabditis_remanei Candida_albicans Capsella_rubella Choanoflagellida_salpingoecidae_Nasp Cicer_arietinum Ciona_intestinalis Coccidioides_immitis Cryptococcus_gattii Danaus_plexippus Danio_rerio Dictyostelium_fasciculatum Drosophila_erecta Drosophila_melanogaster Drosophila_sechellia Gallus_gallus Halocynthia_roretzi Homo_sapiens Ichthyophthirius_multifiliis Maylandia_zebra Megachile_rotundata Mus_musculus Neospora_caninum Neurospora_crassa Orcinus_orca Oreochromis_niloticus Paramecium_tetraurelia Plasmodium_yoelii Saccharomyces_cerevisiae Salmo_salar_For_tpr3 Schizosaccharomyces_japonicus Schizosaccharomyces_pombe Taeniopygia_guttata Takifugu_rubripes Tetrahymena_thermophila Tetrapisispora_phaffii Thalassiosira_pseudonana Theobroma_cacao Toxoplasma_gondii Tribolium_castaneum Trichosporon_asahii Trypanosoma_brucei Trypanosoma_cruzi_For_tpr3 Xenopus_laevis Xenopus_tropicalis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M22744] TITLE NASP_TPR3; LINK TAXA = TaxaForAnalysisStep13903; DIMENSIONS NCHAR=34; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 ] [ . . . ] Albugo_laibachii ARVYMRLGDLSMESENFTRAKQDYENSLVLNKKI Apis_florea ADAYRLLGEVAMEGGNFQGALNDLHRCLDLLQQI Arabidopsis_thaliana VDILCSLAEVSLEREDIESSLSDYKNALSILERL Bombus_terrestris SDAYRLLGEVAMEGGNFQGALNDLHRCLELLQQI Bos_taurus AQAHLKLGEVSVESENYLQAVEEFQACLNLQEQY Caenorhabditis_brenneri ADVLVLLGEHGVSDGKYDQAKEDLEKALEIQKNV Caenorhabditis_briggsae ADVLVVLGDHSVSDGKYDQALEDLEQALEIQKNV Caenorhabditis_elegans ADVLVLLGEHGISDGKYTQAFEDLDRALNIQRNV Caenorhabditis_remanei ADVLILLGDHGIADENYEQAREDLGRALGIQQNI Candida_albicans SETYDILGEVSLEAENFNQAADDLRKCLELRLEL Capsella_rubella VDILCALAEISLEREDIESSLSDYKKALSILERL Choanoflagellida_salpingoecidae_Nasp ADVHFELGSVYLETDQYREAEEELEQCVALRRKW Cicer_arietinum VDILSTLGDVALEREDFETSLSDYQKALSILEQL Ciona_intestinalis AQCHSKLGELGLEVENYSQSIGDFLESLVIHKEL Coccidioides_immitis SDIYDLQAEISLEGERFSEAVSDLRAALKLKREL Cryptococcus_gattii SDCYLALGNVSCETENFSQAVQDFTAAVDIQNTI Danaus_plexippus AEVHLALGEVALESETYDKAVADMISCLDIQKEL Danio_rerio AQIHLKLAEVGVESGNYSQALEDSNECLTLQLKH Dictyostelium_fasciculatum SDVHMLLGDLNVELENHQDALEEYNIALQLRKKQ Drosophila_erecta AEVQTELANIEFENGILEAAREDYEKALKIHGEL Drosophila_melanogaster AEVQTELANIEFENGILEAAREDYEKALKIHGEL Drosophila_sechellia AEVQTELANIEFENGILEAAREDYEKALKIHGEL Gallus_gallus AQAHLKLGEVSIESENYVQAIEEFQACLALQQKY Halocynthia_roretzi AQCHLKLGELGLEVENHPQAIGDFLECLVIQKDL Homo_sapiens AQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQY Ichthyophthirius_multifiliis VQVTLRLGDLEAWRDSLKDSVEQYTEALNIAFQI Maylandia_zebra AQAYLKLGEVSAESGNYPQALDDFQECLALQLKY Megachile_rotundata ADAYRLLGEVAMEGGNFQGALNDLHRCLELLQQI Mus_musculus AQAHLKLGEVSVESENYIQAVEEFQACLSLQEQY Neospora_caninum SFAYVRLADMQLMNERYDEAAQDYREAVSLRERY Neurospora_crassa GDLHDLLAEISLENERYPAAITDSRASLKYKQQL Orcinus_orca AQAHLKLGEVSVESENYIQAVEEFQACLNLQEQY Oreochromis_niloticus AQAHLKLGEVSAESGNYPQALEDFQECLKLQVKH Paramecium_tetraurelia AKVYIKLAELDQWRDKFDDAQENLQKSLQLRLQC Plasmodium_yoelii SYVFIRLGDISLLNHFFEEALKEYEKCVNLREEH Saccharomyces_cerevisiae GDVYILMGDIEREAEMFSRAIHHYLKALGYYKTL Salmo_salar_For_tpr3 AQAHLNLGEVAAESGNYSQAVDDFQQCLSLQLKH Schizosaccharomyces_japonicus ADVLDLLGEISLENESFEQAAQDLQEALLWKQQV Schizosaccharomyces_pombe ADIYDLLGELSLEIENFSQASQDLKTALEWKEKV Taeniopygia_guttata AQAHLKLGEVSIESENYTQAIEEFQACLALQQKY Takifugu_rubripes AQIYLKLGEVSAESGNYPQALEDFQECLCLQLKH Tetrahymena_thermophila VEVTLRIADLEQWRDNFSDALKEYTMALQLSKEI Tetrapisispora_phaffii GDVDQEVEDFATAVEDYKQAIDYIKETDEFENEN Thalassiosira_pseudonana AKVHSRLGDLQKANGNSTGSISDYIISLSIRAKC Theobroma_cacao VDILSALAEVALEREDIESSLSDYQKALSILQQL Toxoplasma_gondii SFAFVRLADMQLMNERYDEAAQDYGEAVSLRERY Tribolium_castaneum AETLIVLGEISLESGNFTSAIEDMTQGLEIQKTL Trichosporon_asahii SECYLALGDVSCETENFDQAVKDYEAAVKLKASL Trypanosoma_brucei AEVHNAIAQVQVEREAYEEALKEYESELFIYRYL Trypanosoma_cruzi_For_tpr3 AEVHNSIAQLQVEREDFDSALKEYESELMTYRFI Xenopus_laevis AQAHQKLGEVCIESENYSQAVEDFLACLNIQKEH Xenopus_tropicalis AQAHLKLGEVSVESENYSQAVEDFLACLNIQKEH ; END; [ The following blocks are output data for analysis step 13903 ] BEGIN TREES; TITLE NASP_TPR3_MLT; LINK TAXA = TaxaForAnalysisStep13903; TREE Imported_tree_0 = [&R] ((((((((((((((((Mus_musculus,Orcinus_orca)0.4840,Bos_taurus)0.5690,Homo_sapiens)0.7330,(Gallus_gallus,Taeniopygia_guttata)0.7510)0.8020,(Xenopus_laevis,Xenopus_tropicalis)0.6870)0.3210,(Danio_rerio,(Salmo_salar_For_tpr3,(Oreochromis_niloticus,(Maylandia_zebra,Takifugu_rubripes)0.5570)0.6060)0.4120)0.7490)0.6530,(Halocynthia_roretzi,Ciona_intestinalis)0.9600)0.5940,Danaus_plexippus)0.3930,Tribolium_castaneum)0.1840,(Caenorhabditis_remanei,(Caenorhabditis_elegans,(Caenorhabditis_brenneri,Caenorhabditis_briggsae)0.4420)0.6170)0.9070)0.0530,(Saccharomyces_cerevisiae,Tetrapisispora_phaffii)0.2780)0.0000,((Trichosporon_asahii,Cryptococcus_gattii)0.8800,(((Bombus_terrestris,Megachile_rotundata)0.5090,Apis_florea)0.9970,(Candida_albicans,((Schizosaccharomyces_pombe,Schizosaccharomyces_japonicus)0.6470,(Coccidioides_immitis,Neurospora_crassa)0.6750)0.3000)0.2030)0.1270)0.0100)0.0060,((((Neospora_caninum,Toxoplasma_gondii)0.9500,Plasmodium_yoelii)0.6300,Choanoflagellida_salpingoecidae_Nasp)0.1710,(((Tetrahymena_thermophila,Ichthyophthirius_multifiliis)0.7470,Paramecium_tetraurelia)0.5270,(Dictyostelium_fasciculatum,(Albugo_laibachii,Thalassiosira_pseudonana)0.2720)0.1090)0.0810)0.0170)0.0760,(Cicer_arietinum,(Theobroma_cacao,(Arabidopsis_thaliana,Capsella_rubella)0.8550)0.6130)0.9490)0.1830,(Drosophila_melanogaster,(Drosophila_sechellia,Drosophila_erecta)0.3160)0.9990)0.9830,(Trypanosoma_cruzi_For_tpr3,Trypanosoma_brucei)0.9830); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr75487] END;