#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 20, 2025; 6:58 GMT TreeBASE (cc) 1994-2008 Study reference: Yang Y., Lee D., Wang Y., Hu J., Li W., Leu J., Chang G., Ke H., Kang S., Lin S., Kou G., & Lo C. 2014. The genome and occlusion bodies of marine Penaeus monodon nudivirus (PmNV, also known as MBV and PemoNPV) suggest that it should be assigned to a new nudivirus genus that is distinct from the terrestrial nudiviruses. BMC Genomics, 15(628). TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15937] [ The following blocks are input data for analysis step 13976 ] BEGIN TAXA; TITLE TaxaForAnalysisStep13976; DIMENSIONS NTAX=9; TAXLABELS AcMNPV CpGV CuniNPV GbNV 'HzNV_1' 'HzNV_2' NeleNPV OrNV PmNV ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M22897] TITLE Nudiviridae_matrix; LINK TAXA = TaxaForAnalysisStep13976; DIMENSIONS NCHAR=2715; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 1910 1920 1930 1940 1950 1960 1970 1980 1990 2000 2010 2020 2030 2040 2050 2060 2070 2080 2090 2100 2110 2120 2130 2140 2150 2160 2170 2180 2190 2200 2210 2220 2230 2240 2250 2260 2270 2280 2290 2300 2310 2320 2330 2340 2350 2360 2370 2380 2390 2400 2410 2420 2430 2440 2450 2460 2470 2480 2490 2500 2510 2520 2530 2540 2550 2560 2570 2580 2590 2600 2610 2620 2630 2640 2650 2660 2670 2680 2690 2700 2710 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] AcMNPV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDYGDFVIEKEISYSINFSQDLLYKILNSYIVPN-YSLAQQYFDLYDENGFRTRIPIQSA--------------------CNNIISSVKKTNSKHKKFVYWPKDTNALVPLVWRESKEIKLPYKTLSHNLSKIIKVYVYQHDK-IEIKFEHVYFSKSDIDLFDST-MANKISKLLTLLENGDASETLQ--NSQVGSDEILARIRLEYEFDDDAPDDAQ-------------------LNVMCNIIADMEALTDA--QNISPFVPLTTLIDKMAPRKFEREQKIVYGDDAFDNASVKKWALKLDGMRGRGLFMR-NFCIIQTDDMQFYKTKMAN---------------------------------------LFALN-------NIVAFQCEVMDKQ-KIYITDLLQVFKYKYNNRTQYECGVNASYAIDPVTAIECINYMNNNVQSVTLTDTCPAIELRFQQFFDPPLQQSN-------------YMTVSVDGYVVLDTELRYVKYKWMPTTELEYDAVNKS-------FNTLNGPLNGLMILTD-------LPELLHENIYECVITDT-TINVLKHRRDRIVPNMSFDDGVVKAQTDPFALKRGGHNVQKWT-----------SYALFKLFKEFRINKNYSKLIDFLTENFPNNVKNKTFNFSSTGHLFHSLHAYVPSVSDLVKERKQIRLQTEYLAK-------------------LFNNTINDFKLYTELYEFIERTEGVDCCCPCQLLHKSLLNTKNYVENLNCKLFDIKPPKFKK--EPFDNILYKYSLNYKSLLLKKKEKHTSTGCTRKKKIKHRQILNDKVIYLQNSN---KNKLFELSGLSLKS----------CRHDFVTVESQTRAGDEIASFIRYCRLCG-------------------------------------------------MSGCMKIYPYNELKTRFAEYAK-----------PGEFNITSADTF-RIIRLHYDEKQGCLFAFCNTNIKERVLQFYFKVKLN-------LYSYKQCYDKHIFPS---CRNKCISYTTFVAPGVEG-------NYLNKINVIKYERNKAAPSDNAACLDKFLHNVNRVHMQTP-----FVEGAYMRFKKTQRCQNNYVGGSTTRMFNLQH-----FNEDFELVDEMTLTSGIMPVLSCYDIETHSDGHNMSKASVDCIMSIGFVVYKNDE-YAKFCFMYHK-----LPTQIPETYD-----DDTYVVMFQNEIDMITAFFDMIK-ITNPDVILDFNGDVFDLPYILG---RLNKTKML-LKRYDLPAAA-PTTKLFINKLGNKVDTYYFNYY-IHIDLYKFFSSDSNQHKVENFQLNTISSYYLGENKIDLPWTE-------MVKMYNTRRLDVIAKYNVQDCMLPIKLFVKLKMADSVYS--QCILHRLCTD-DVICNISHLISVACFYAAITNTRINESTGKEEPDPYFFNKNDLSIISG---------------------------QFKADKAAAGISNLKRKLIPLKNIPK-DAINLGPANQTVKYKGG-KVLKPRAGIYKNAFSLDFNSLYLTIM--IAICACLSNLILCEDGNVYLNHNSRAIVVKLLLKLLSERCKFK------KNRDNQSESAFLYDLYDQKQNSVKRTANSIYGYYGIFYKVLANYITRVGRNQLRLAISLIEGLSNDPEILEKFN-LGSI------------------TFKVVYGDTDSTFVLPTFN---YNEISNETDTLKQICTHVETRVNNSFT-------------------------------------------------------------------------DGYKMAFENLMKVLILL-----KKKKYCYLNSENKIVYKGWLVKKDMPVFMRIAF-----RTAVEQILRHLD-MDKCLQSLQTSFY---EYYDEFAKSKSLTDYSFSMTYNDNPGKKRKSTD-------------------------------------DNEGPSPKRRVITVARHCREILVNKG-TDFVPGNGDRIPYLLIDIEGKVTE--KAYPLRLFDPVKMRISWIKHMG-ILCTFMNELLEIFGDE----------------------QKDKIAKCFTAIMQKYMQNQLYDRKEPVLVKINQKKCSVKRKRDDDDDNDDDDDDDCDSSDSENDTQCANNTYKFCLYKMK--------KMTTTERPPPPPLSMSKKETPTLLDSISKKIST-------TETLQRLRNKN--------LTTLNKIKYDSELLLHYLYDDHHNKNS---------DYANNNINVIKISKVKVKKTGASILAHYFAQIHVSTGYSFEFHPGSQPR-TFQTIHTDG---LIIKVLILCDECCKKELRDYIKGENS----FNVAFRNCESILCRRVS-----FQTVLLTCAILLLLFNVEKFSMIN-LLIILLILLSLFCHNNYIISNPYIEFCNHKSTNKKYDR CpGV -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSEREQEVSYTFTYSQDVLYRLKG-WLDAN-LCDAQSYVEVYDTNDVRTRIYDG------------------------GVMSTVKKRLVESGRVVVMVGDN--FVPMINRECHET--IYRTCGERLKRVCQTRVYKSNNDIEIKFEQIYYEHNVGDTLDPL-TASKQLTMYNLLQPDNAIDVTS--NSHLGSDEILANCRLELEYEGSVNGDVL-------------------CRAAHLINHIEGVVLRD--VIISPFISHTSLFNEICYRPFTNELIIG----QCGAADIKLWALKLDGVRGKAYIVNGVRMFVQLDDMQMFSGRVERNDDESELTGRKSKNFKIFRFCRLNSDSCTEPPEQSSGAPPFLHN-------RIVCFQVEYLAPVNTFYLTDVISVYKYKYDNRNQYDVSAGVG-----VDVADAVNFLNAQHTAQLVTSGGQLFRVECQEFHAN-VKNVN-------------VDRATNDGFVGVTHRGGLVKVKTQKSFEMKYTGD-----------NSFVCSFGEFSCVDG-------GGEYRRGKIYEVIIVQQDKVKVLKERPDRLISNMSLGEGPGVAQNGPSMVH------------------------LFGVFSKFRRDNDYEGLVDYLITNYPQNVKNRTFNFHNTGHIFHMLYAYVPSPSNKQRK----QIRLDCMEN-------------------LAENPKNDFCLYEDLMGLID----DEYKCPCELISARLNDNIVYNESLKNKNFDIKPCKLKK--EPIDAILFKYSINWKNSLNKKR-VLAGKRKSGERRVVAEEETAIVVAVDKIVT---PSSLKSINGYTIEA----------CVHDYVVEERQLRAGDEAVSFVRYCVKCGCGQM-------------------LLSKRKAEGVEYEPAVKAIKLSQETLMGDNTNFKVCLDVNELIPAKLV-----------SAGMCFNNTHEF-LITRLRYDN--GFLLLFLTG---VNNVQLYYKTPCT-------IHSYRRCY--HMRTP---CVNKCETYKSMVVTGLKA-------YQCNRINVFKVDRARCN-NDDAMLLDRFCTDVNRVQMQLG-----LCEGDYVRFKNVVRVNEEGLAIGP--------------LGNVEKLKVEDVRNPTKVIVASFDLETFTNLNSFSNPKVDPIITISLVVKTHDDTPKQYCFINTQGRNFTLDDPVEERVD-----GEIIVLPYHNERDMIVAFFTLLC-KSNPDTILDYNGDKFDIPYWTQRAIILDIDPKF-LRRYNLSPVE-MNTVEVNTKFGYKLNNHFMKYF-NHLDVYQFIKGSIDASKLENLKLDTAASYYLKVGKVELPVRE-------MMRLYNNKQFGKIVKYNVRDSLLPLNMFLKCKMDNKQYA--DASLLYLTND-DSHLTIYHRLNLALFHRAISN--INEAG---RPDPYFFNRSDLSKIMGGNKRFAADEKED--------------KEVENEGELVDFTVLGRPPVPTSQIPA-DAIPLCDLKTRIKYIGG-KVLSPKPGYYRKTFTLDFSQLYTSIM--IFFTTCLSNLFVGANKKLYLQINQNAITTKFLKEMANNRVLYK------QEMKKYEPDSFEYQMYDSWQNAAKLVCNSQYGWFGLCCKPLANFITAQGRSKLEEAQRIITELSENEAIKTKWN-LSKM------------------KLEVVYGDTDSNFVSIDLEREEFERMGGDVGLRRLIMEDIMKPLNDTWK-------------------------------------------------------------------------GAFKMELENIMDCMLIK-----GKKSYMCLKENGTLYKRGFNVKKDSPLFLRQAF-----DAVIFEILNNHS-LDCILNHLVSSLK---KKRDEFCVAN-CEEYSFSQTLN--------------------------------------------------ETKNGGTGVVTIANELAIQLRNDANTKYIPSSGDRIPYLLIDKLASTVK--GRAKPTQLINADDTINWSKHLG-IVNTFLNDIMSMIGN------------------------DTLFVYAFNEICEYFQKDQCFDVLYPNIKTLTNSRIKDILCKELNVKKKKDLTDDKLNDILRNNEQKFIHKYEFTLNKRRPAYTINI-ERFSTDCPKCNERGVSAVQKTTSLELVVEKQSA-------SRKRPSKQNMSS------QEGSSKRVKYDSQLMLKYVFDFKTEDTQ---------HLPN----IINICRVRVRKTGGAVLAHYFAQVYLANNFNFEFHPGSQPK-TFQAINDDRD-YLLHKSLVLCEECCREELQQYVDGENN----FNIAFQNCETILCKRKS-----VQSVIGVVLFIVLLINIINFTIIN-LIFIAFLVFLLYFVNNYLLMEPRVEYCKHYKTVGQNI- CuniNPV --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEIELSHTFEFPTERVGPLVRWTDGYCRERNFVHDEYLECYQKEGARVRSWPHKQR------------------------IESIVKRCDERVCIVAPEGCVPLVYTRCTELNVEPAATPDVRHVRLVTSYTKSVPSVGKLVVRVERVLVEDREANVGGVPGYVAELTKKLENIVNADKNRMEPPEMRNHSPESVHIRLRAEFEFENKVAEELHSAEQLLERGVRFGAHWRTFAAGRRELVEFVNAIYLESKVQYSLALSVSKHYGRTMYQKFSGEIGVAEIP-----SDVEFVSCKLDGVRGKAIVEPHEGHHRIHLALDDERGFLFSLPGG-------------------------------------LHDRAWVSRAGLTLLQVEYVEQIETFFVVDVLGVHGFGYLYGGCYVDEMQNYRSLTLDSITMLRSGNLADKLTLYDHIDHSPTMYSLATQFFVRGKRANSTLADPMGEQFWHAHGAPLDGRIVVTRSGDLYKLKCEKSYELRFNG------------AQLEDAVGKTFIPSR--------VDLEPDTIYECTIVDNFATVKRARLDRATANTVEMAVECGSEAVNAVPAD----------------------HDDFQRWMACETLMDKHRILLQLMDTKPDGIERLCAVLRRYARTSPDKKDPMTIPTSAEDHTLHPLYGFNPSQKGK------------------RCINLNPDKVRAMIANCETAIMFYRSVYDLGVNSCACLYAQQDHELRQAKEEARLKRSFNEHIKDRNNSSPGSSSGLVDFFKLNKRCVQRGPKFMTTQVPIVRTRASNITIEPLKREERARFIEAGRPRLGYS----DEIVTCKHENTEQISVQQRSGDEAATIYVRCIDCKYISK-----------------------------------------QTMFMKKCSWEEVRNYVDSTRCEYTVP----------ANAVFLITKIRCISDERPNSYLQPSEVHLYLRNPFIGIKVILYSVPIVGYAFCNCERKGEVDCKLCVPCTPVLAPDHINPVIKRVRQTTNGVR------NYLCDSNMSDVERFMNYYKIFESSYVAFTTHLTPQNGTVRGLNIAQVYVPTLALPEEVNGFQIAYNPRGPK-------------KMTDDQLVPLKPIKMTMASYDIETYNSSKHHRMADPTIEGDTVFSISIHYYESAEVQEYFQLYLDPNAVIDSEYRPTVDTFKEGTTIRVILCKDEAELMDNFITLID-ALNPDLVVDFNGHGYDIPYMITRQSGDPKLNTFKFMRYGVTDPT----INFVKNDSYVDVNRITSSSYQMLDMFKFAR--KWHPGETSFKLDDLASKYLGAKKISYDFKV-------MKVDYEQGRPHLIIEYNMVDAILVTLLSLHLQAPERLFT--KARMTGYTMNYALDEGAVKAYNTLFFYRGLEMNQIYTFTDSLRNKLSPEVLGGRRQRYDAEILNISFKR-----------------AIEEERKRSPERQDELDDLERKSLFRISTAQQTWGDQGNTKIGGGLVLPTVPGLHEHLAIMDFNSLYPSIM--LAERVCPNNIAVESNGDLLLVPMPKENLTSSIIKEALKNRKFHR-----SEAAKYDKDSYEYMMHDAAQGAYKITANSVYGFFALRFPPLGNFITKTGRGKVRSAVNYTTEYWNEQYGLCAFFVYGDTDS------------IMFKFMQPTSGVTVDPNAFPGLIEHFSAGLAKTVGVGYNMALELIVRSSVFTH-------------------------------------------------------------------------RKKSYVFHIADNIYKYRGLLVGRNLTRAIVRCYKRWIEYTMKLCEEGALSYSLAT---DILLEDLRKIQEEDFSVDSLSRTISYSGKSGSLIANSLVGQHEAAFGYTPTVGDRLKFISATN-----------------------------------IVYEHGKLLKGKLTANMTPTRASLLYNFALKLKLERNQLEVQHREKFNNMRTYNSYFLKAERLLDSITELIQTPSKARKLFEDLKKIVDSVIPYN--------------LLTDLFDPDIHRVNWSIYGRQGHTLVSVLGPTFDAHFPESPNEVERIRNELDEKFERCSYPTTARLYNTKGEVVVSKTRGYRHISAKQLVQEFVACRNELEVEDADEIQFDRSEVAQCNGERAMAKVRAPRRSGPPVVQHIPAKLAAPSHDDEEFTEDEIRTWLGLKMMSAGVLMSDEQRVHTRCHPQKVFKTLELAKHDWCKVTDAVTSTETLSLMNHFFRIIECG-DRSVELHPG-CPNTTLRERSNRPA--IEIYTGYHRRTCVYEMVEEMIEQDLR----FNLMFNNCEKNITGSSR------QAQFIALLIVTMLTAVLLLSPQYSLLLILYTVVLLLYYNLVVHCRPVHCKRVEPDKRKGVI- GbNV ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQVIEWESSIKIYINKKQFDDLLKKIN----------------------IIATDSIIYFTDNTRLAHRLYQKKILKKKEYILLYHKKNFFPIKRSISEEDLLPRPNMESLVIKNAISRNILYQDSFVRINLD-VERTDIGNKYCLCSEIEYEEDS--------------SYSTIRLQETKLVSFF-------------------LKFLKEKNLINLLTLDN---LTTNDIFESVPNKMSMWYNLQKN-------------EKKYWAYKWNGVKAKMCSSDFGKKITLWEDIKNIIEIQCT----------------------------------------------------------------ELYKRLPFLNNLCIQLEHVNDYYVLTEILSAKFNSRFYMIEPLTNIK------------LLYLIKKKWDDSIELLP-------------NKRLYIQEYFDTEIPNSYDESK-----------------------------FDGFIVIQN-------------EKILKYKIPTIDMKCIKGTLYS-------------------------------------------------------VSSKKFTLDFEGIPGKIYEVSSTFKVLRLRKDRISSGSDKEYEEFVKGCIYFNKYCKKMSRDIN------------------------------CCNIAFITKAPIKRTSKKYIIQECTHLFQISQVKQDRRGDECSTTFEKCAICNLERKKEMEKSDIIFKNTNIKKNILNYEFGFKMRRAVTLWDDEAYIYVFDWITE-----------------------------------EEEVSNEGNGFRNRDVLIAIG---------------------------------------------------------------------------------CDKNYNFKKIKLSLKPSLFVCTSKFEVLKTVCVNKFAYEQKFINIINTEMTLSCNNYTVLDTLTNAQNVGQS----KLIKIEFDTVKDLKYLFN------FLKNNNQFYNFVSTTFYWNVTKQIQFELYYKYKKFYNIIH----FWVNKNLDIKEYSSSSPRSNLHLTLP-------------LITFDIETVSDDANRLPTGEDENDILFSVSIHYVHTDTLYTFVYLPCECENKKNVLEKSYYEYKYPYVKTHHTR-----------------IFTNEKDLLIATMERLTIQGKLHYLIGYNSLKYDIKFLMMRCVFYNIYKDNFFYNDGIQFLYNQIHLDLCDITRIQVKLNNYKLNTLAEEKLKESKVDVDSVLLRHTFRRIQDSNICHSYDENEILNK--------KNNTNYPCVIDILYYNNKDTILVSQLIKHNNVLDFISN--FLYTVSEGMYFKNYNGIKYRVINQCTTTALKNNIFFSFFKSGKNNIAIPFITKRDDKLLTDYVFTQYDQN----------------INLNNTIENKTSKKKFPGGANYCRGIYITSKPVVCSDYKVAYT--TLIDRLNLGDETTGIFPASLLLSIWN----FLNAISETFSLENDYVLFDYKTHSGFSQSQTKILYHEYVNN------GIFCGEKFSFTKENLEKRGNSLVIIIYQKTRSVLANVTSIANDYRALLKQKASFYDNLYNELENLSNNLNDLYG---EF------------------EEENEFIDGDEDDENSEKD--------YASWLVTDESKFIYTIDKRLLS-------------------------------------------------------------------------NLNKQDAENEVKTKMINAASRRDAFESLYYLAKINNSSIYGVLGPICPYVCAAIT-----CIVRTSLLSSAHLLQTTYPDLVVRYMDTDSMFFELCDSFKNYKSQIDYFINLKFP----------------------------------------------------YLTLESHVLAVCHFIKTKTILKKKEHSDNIKYTQHVHGPEAWKTLVKYVELHGKNVKTDTDIYNLFLNFYIYIKEKHISFFYHT---------------------------IKVKENYATNVPAKELKNYLAEHFTALKDNFKQTIYYKLLHSDYNKTLYRPVIELNDQNEVSKTVNLYKFFLPMFMIVYYIVHGYLSTNNQPFYVYLSPKEMLKMNFKAYLFLINDN-------IEDSLLEDITDKDIQESSTLIEEEESMSTIKTLAPGYEHFSDVIN-----------AKKDDVFTLKICIQAIKNSFGLMDHWFYIINDK------EHHVGVYYKGSVLPLNTTKG-SHVVTEKTICLKCYEKLINFVQYREDKRLF-KFYPFINCETLTTGWSV------QVVILFLLPLVAVVGFLGYVYWA-LVLFLCMLVLYLFASKYNFSRTNKSLCKHLKKRYRKK- 'HzNV_1' MKRSANFSMSSSSEDAYADAHPAAKRVNNFNSVGFGDGNGFGKRFDSTQSSTDEDSEIPKPVQPSSKSTNSSTLKSTGSALNPPSQKSLLNPKSIAIQKSTLQKSGIHKSSVHKSVAQKSVAQKSTSPHQKSTTQKSTSPHQKSPLPQKSTNQKSTNQKNALIKSAIESSAKSAGLKSPLNTQDGVKSPQDGSPDSATSTSVKSSNEKSVGAGSASPKSSVSSGSVKSVGSSGSGGSAKSTKSNISAKSTKSNISAKSATSSIGS-NGSGKSTPSANNGQSGKNTISGQSVQSGKSTISTQSANSGKSSSLNSNSLNSNTKSSSSGIESNNNAKSAHSASNVKNKSASNTEMVKKDCKEPKQKQPQPKESKPSLAQQPQTQESKSTR----KQHQN-QPQNQTQKQHQNQPQNQAQKQH--QNQTQKQNQTPNQKTLAHIASMTENNPN-------------------CEMEYETYFALPVSTHIGECIKKNIARVDLPHREVWVMYFKDNTRVTGTTSQRKHVISKSRHLYLSGTMATPIVIPMCRTVSIEENVPFTASMSDLSSMVQRFVLFRNNNIRISLECRSNGSGNEYYISGEVEYTLDVLNDFHGLRMQEAALVCELRDTLGQYFASNVVSNIMCVLHRLQPATHDSVFKMPCRVFSKFHKVQIRDSKSFIYKHKYDGFKCKLVCTEPNKVLYQDDN-------------IKFIQFNSSIFNTVPNLYFQLENMCTNGRKESQSSSEGIPTVIITDVLGVRLGGQLFMPEPEEVLKFLSTFNRQQQYVNFGDGCKRILVQESIDVNATTKFKRDGLIVIYRNKEFKFKFPTFDVKLMNGMVYVKNSNNMDDSLNLIHYDNMPDGIYEVSFDNLQAGTSSMCNQLTFLRRRTDRLTPSTRAEVEEAMHELDLMIGCVFKLKGMQSEQNQHNNPLNVYELEDHFSIDSNLLNSETINSSLYRLASLDAYRKYKTNFKIVNIRLSLNTSNSTVLYSFTTSDPSVVAIH--ESLQKERETNEISLPTERFKTRIEKEGSRVKFEKLCMTYRDPDTQRVYFRTHTGKVYDNHYSLGCFLEKRPDEIPTIDIDCDHVFKTIEQQTRSGDEEITVSNICIKCNADKKNLRSMPKLVKRDQLEVLAKLLNVLTDREFDYKESQTVTHLFSMAMMYADEEHYYNNKISDESIKWTDRVYVLDWASTKNQIYAFGVDESG-DSAKLMINNVKTSLFVFAENEMHLTPLLNLRHVDLERPIRELSSFNFEIPNNTLLDTL---IQTTSVQYKTFQVPTCSFGDSQNLHKLLNTTALKNHIKTTATWSLELLIVFEMACRTSQASLEECSVYDVFVDANLARYEDLPKPKIDIVAFDIETLSSFDYRLPLGDYKNDILFSASIKDHGTNTMYSFVNIPVPVDFDYTTTGSGTVAKRARLEQTDTVDANSESVRAYTERLKSLMERDFEATRN-----MQRKLVVVHDEVDLIRLILQTLD-RKRLYFLLGYNSKGYDMTFLIKRTAYLCLPEFKNFTLYRGMPVY-GNHMIHIDLIKIFRQLYPEVGK-LSLDTMAKLCLGQAEGKVEFNAIN-IRHVYRQLLERGLPNDE-------CHFEKFNIDLATIVHYNDVDTELLCRLWDSLSYDEFLPK--LCKSHLISIVRYTQCKIGEFINNKSVYSSLTDGKILTLHKSIGGGLMITTNGSVMYTYN------------------------------QNQVSAGVNEASYGGGFNMRIAR-EVFTNCKVNDVVAYYP--KLKQGHNISYETIAIVPVHVLQRLRP--ILNPNHPCRYFTFTVHKCSKEEVVNHANTRNLINMLENNCDEF------SSLDECCKN------LNSNDRVLILSVERKPSLLGNMIHKQNVLRSRAKDLKKEMETMLTQVQIRLDAVKNRGDDYQEV------------------VFDFDDDDDDEEEEDEDEDED--ENKDEDKEDDKDSDTKTEDKSKTETN-------------------------------------------------------------------------TESKSNTESNTESKTDSNTDDPSKPENMELCDTGSIFNTADVDKSSDMKMLVPKF-----KLLTFDEINRCN-DVQLLTDYEVKLKGELSRINSLYRNLKIVNCSYYGLLGSDYG--------------------------------------------ALSGRLVAAALTTLGRKYIIDMARFAHVQNFKAVLIDTDSVFVHNGDSNLE--NNPLPEFCKTLNEELELTAKMY-QFIFIMAKKVYLAKCKGEWISRGINKNGPTIWNDVIFTLAERYLIERVPISSKMLQDILVNEVYMYIAERARKDRSVVLCMMSTNREKVDTANTPIAKMMRAVVE-DEPDYIFGEKQVKYFHYLKN-KPTDVIFEAAHHLNDVHISQLNLYKFVSKINTT-------IYQILSKAIYDANVKERGVHATITMAEYNIDSMAAFLRVNEIMKG-----------WEDMQETAVEMCIKRLKNS-SFIIAHYFIRIPS---LDLEIHPGMYQKGNFLNLNSTKH-YRVLTVTYACSECLNELLIKSENVLHA----WYYPLINCETLTKGLCIGAPWSIQTILSTCAATVMGILFTKYEAFTATLLTLCVLVIMILCMQYNVRQDEVYKCIHV-------- 'HzNV_2' MKRSANFSMSSSSEDAYADAHPAAKRVNNFNSVGFGDGNGFGKRFDSTQSSTDEDSEIPKPVQPSSKSTNSSTLKSTGSALNPPSQKSLLNPKSIAIQKSTLQKSGIHKSSVQKSTSQK------------STSQKSTSPHQKSPLHQKSINQK-----NALIKSAIESSAKSAGLKSPTSTQDGVKSPQDGSPDSATSTSVKSSNEKSVGAGSASPKSSVSSGSVKSAGSSGSGGSAKSTKSNISANSTKSNISAKSATSSIGS-NGSGKSTPSANNGQSGKNTISGQSVQSGKSTISTQSANSGKSSSLNSNSLNSNTKSTSSGIESNNNAKSAHSASSVKNKSASNTEMAKKDCKEPKQKQPQPKESKPSLAQQPPTQDSKSTQNQTQKQHQN-QPQNQTQKQHQNQPQNQTQKQH--QNQ--KQNQTPNQKTLAHIASMAENNPN-------------------CEMEYETYFALPVSTHIGECIKKNIARVDLPHREVWVMYFKDNTRVTGTTSQRKHVISKSRHLYLSGTMATPIVIPMCRTVSIEENVPFTASMSDLSSMVQRFVLFRNNNIRISLECRSNGSGNEYYISGEVEYTLDVLNDFHGLRMQEAALVCELRDTLGQYFASNVVSNIMCVLHRLQPATHDSVFKMPCRVFSKFHKVQIRDSKSFIYKHKYDGFKCKLVCTEPNKVLYQDDN-------------IKFIQFNSSIFNTVPNLYFQLENMCTNGRKESQSSSEGIPTVIITDVLGVRLGGQLFMPEPEEVLKFLSTFNRQQQYVNFGDGCKRILVQESIDVNATTKFKRDGLIVIYRNKEFKFKFPTFDVKLMNGMVYVKNSNNMDDSLNLIHYDNMPDGIYEVSFDNLQAGTSSMCNQLTFLRRRTDRLTPSTRAEVEEAMHELDLMIGCVFKLKGMQSEQKQHNNPLNVYELEDHFSIDSNLLNSETINSSLYRLASLDAYRKYKTNFKIVNIRLSLNTSNSTVLYSFTTSDPSVVAIH--ESLQKERETNEISLPTERFKTRIEKEGSRVKFEKLCMTYRDPDTQRVYFRTHTGKVYDNHYSLGCFLEKRPDEIPTIDIDCDHVFKTIEQQTRSGDEEITVSNICIKCNADKKNLRSMPKLVKRDQLEVLAKLLNVLTDREFDYKESQTVTHLFSMAMMYADEEHYYNNKISDESIKWTDRVYVLDWASTKNQIYAFGVDESG-DSAKLMINNVKTSLFVFAENEMHLTPLLNLRHVDLERPIRELSSFNFEIPNNTLLDTL---IQTTSVQYKTFQVPTCSFGDSQNLHKLLNTTALKNHIKTTATWSLELLIVFEMACRTSQASLEECSVYDVFVDANLARYEDLPKPKIDIVAFDIETLSSFDYRLPLGDYKNDILFSASIKDHGTNTMYSFVNIPVPVDFDYTTTGSGTVAKRARLEQTDTVDANSESVRAYTERLKSLMERDFEATRN-----MQRKLVVVHDEVDLIRLILQTLD-RKRLYFLLGYNSKGYDMTFLIKRTAYLCLPEFKNFTLYRGMPVY-GNHMIHIDLIKIFRQLYPEVGK-LSLDTMAKLCLGQAEGKVEFNAIN-IRHVYRHLLERGLPNDE-------CHFEKFNIDLATIVHYNDVDTELLCRLWDSLSYDEFLPK--LCKSHLISIVRYTQCKIGEFINNKSVYSSLTDGKILTLHKSIGGGLMITTNGSVMYTYN------------------------------QNQVSAGVNEASYGGGFNMRIAR-EVFTNCKVNDVVAYYP--KLKQGHNISYETIAIVPVHVLQRLRP--ILNPNHPCRYFTFTVHKCSKEEVVNHANTRNLINMLENNCDEF------SSLDECCKN------LNSNDRVLILSVERKPSLLGNMIHKQNVLRSRAKDLKKEMETMLTQVQIRLDAVKNRGDDYQEV------------------VFDFDDDDEDEEEEDEDEDEDKDEDKDEDKEDDKDSDTKTEDKSKTETN-------------------------------------------------------------------------TESK--TESNTESKTDSNTDDPSNPENMELCNTGSIFNTADVDKSSDMKMLVPKF-----KLLTFDEINRCN-DVQLLTDYEVKLKGELSRINSLYRNLKIVNCSYYGLLGSDYG--------------------------------------------ALSGRLVAAALTTLGRKYIIDMARFAHVQNFKAVLIDTDSVFVHNGDSNLE--NNPLPEFCKTLNEELELTAKMY-QFIFIMAKKVYLAKCKGEWISRGINKNGPTIWNDVIFTLAERYLIERVPISSKMLQDILVNEVYMYIAERARKDRSVVLCMMSTNREKVDTANTPIAKMMRAVVE-DEPDYIFGEKQVKYFHYLKN-KPTDVIFEAAHHLNDVHISQLNLYKFVSKINTT-------IYQILSKAIYDANVKERGVHATITMAEYNIDSMAAFLRVNEIMKG-----------WEDMQETAVEMCIKRLKNS-SFIIAHYFIRIPS---LDLEIHPGMYQKGNFLNLNSTKH-YRVLTVTYACSDCLNELLIKSENVLHA----WYYPLINCETLTKGLCIGAPWSIQTILSTCAATVMGILFTKYEAFTATLLTLCVLVIMILCMQYNVRQDEVYKCIHV-------- NeleNPV --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEIERELKYELQCDQKRAYDIYKMVQDDESFEIVESYTDIRDSGNNRTRLMNEAN--------------------DLNRDLKTIKKKVTEKNVMTYVHEDWIIQMSNTTSLEEPSRIFGEIYDICRVNVYRMTGFCNVEIKFEETFMNRSKSCYNGIHGN-NIIKTLQKLNTMIDDGLVVNMPENNVRIGSDEILLRIRVELEYGYGNPNERD-------------------FAEFSEVVKCLLTYLHK-DLYYTLHVAHDEMFNKIKYRNFKKTILSTEID---NGSPYEFYAKKLDGTRCKGITLNSSVQTNDNSYEDVQILYILGDDRK---------------------------------FHTFKLDQPLTSQKNVSLGLQLEQINDELFYITDILTMFIVDYNNVTQYNLDYNNKEDIDLRTALTLLPKLRDN-------NNIRIQRYYKECLFEQNVYNYE-------------TQTIPTDGLIAVTSDYELHKIKHVVTYELMYKGQ-----------NIFTDRSNKKYKILS-------DVHCNVNSIYECVVIHDVVTKILKERNDRYFPDEIMNPS-SQFNTTPCTLK-----------------------DIETIFFQFRNNNSWSQLISYLKSEQPKCVK--TFNLTNTGHRYHALWAYNPISDKREKK--QISLDEHKIEQ-------------------MHRVTNNNAKLYTEIR----KSGIDDNICPCEIINNYLLEIKSFKTARCSKNFNQPPAKLTP--NLMGNILKNFTINLLMDKKTKTKIVKPTRYSTYPAVIDIPSTMHIKYAG-------HSTIKQICLHESSG---------------KTIEIQNRSMDEMVNIYT?CSKCN------------------------------EKYKIQMLTYVSNEVFQELLYDKNFVESIQPIVDGETAHNG-----------RGSFSIPRTVVW-RITRITPIEDAERVNKIIFN--LTTNLSKHFPRNICVYVIQPKLHMWQRCYCNNFANGR--CNRNCIKMKCLLAPGVDG--------YENTINVFKVYK----KYGQTRTLDDFLTTTMRLSHQYN-----ITEGSYIRFEKDITVDKLPIACDLS---------------QFVIVSDNVQEIKISVLAFDIEVRSSSNRFCDATRKEDEIISISLVLKNVDDNILRFCLVYCPNVKNNIERKNISVG-------KTLVILHNTEKDLIANFFTCVE-LLNPDFITGYNSSNFDFPYIQKRMQLLKMGNLF-FRRFGFQLEV-KFGTFFQKFHKVPSVN-------IPLHAYHDTFVAVGSLKLDNYRLNTVAESLLNEQKIDLPFKE-------MNRLWGIGEVGDIVRYNIYDSELTLKIFMKIDVINVSYS--MCDIMKISTD-SLNEGIMKKLTGLIFDYAIKN--TNCVNGKKVPDPYFLSINDFYIIKNRS-------------------------NDKSQENKMCFDRLKRTKMPFSAIKKYNPVKLCNSDGKFVYLGG-DVMTPVPGVYENVGIFDFEGMYGTRM--IKDKICLSNVVITDTDEVYRLTNKTGVIDKIVNDLKIRRSELKRAKSKLKNDMKTSDVSFEYKMLDISQNTVKEIINSVYGWYATNCKILAAEITRLAREKLYDAQNQINNYEPN-------------------------------YFKVIYGDTDSCFIH-----------VINCDNPVDQLKILENKLNASWN-------------------------------------------------------------------------GDGVIEFENYCVIIILY-----RKKNYCFLTLERVFKDTIVTKRRNKPKLARQSS-----DILLRTYLNTRD-IIKGCQACITYLQN---AMSEFNPSLFTSSVQYTEGKN-------------------------------------------------------------SIASYCVELLKKHSVQTLPHDGERVDILQIVNKANTVKE-KSLPLEMYDPNVHTIDLIKFCDDNFKTIMTMLINLLPEK---------------------------------------RNLLIDEYQKIFKLITKSDMRCCLVFKKGE-----------------------------------------------------------------WDIVYSKSQD-------IRSFFK---------------MLNKIKYDADLLIKYLFNTKKSRN----------------INTVSIYKHNVRKFNTSLMSHFFAKVDIN-GQKFEIHPGSQPNTFQTNKNLSAD-DELVKEFVECDYCVKSRLNKFVQDENN----FNILLNNCEKITCQQTS------WQSLIFINCLCNVFLFIYYNKF?FLFLALMSLVILIYFNTFYNFYDKTYICEHL-------- OrNV -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MHSISSFVNQSEWETTISIQATESDYLTAYNDNR-----------------------NTVDIIFLLRDGLRLSNRTVQKKTTQTSRRLLVYYRNQWVSLERTTAIEENIQPS--SPIVVEKCIHRIIVHHQDGIRISYN-KEVGPYGEKYNIEYEVEYAPNLD--------------YKHILRQERRLMKLF-------------------LKHGHAIRRTIMTRIDM---------FSCVMSKVQMWHCFNHA-------------EPYIWAYKWNGIKAKMLITDKVEPDGSYITYIWSDASTISN-------------------------------------------------------------HLCRGNNIEYLINICCAVELMEDRIIIIEAIGTMVDDKIYTTEPMANAS-------------FLKHLNGKFTENVLVD-------------DKPLLIQKFYPPPLPNRY------------------------------KDDCDGFIIIQH-------------DLIIKWKIPTIDVKCITP-------------------------------------------------------YTFKVGSQIISLAFVGEPGKIYEITYKHEVLRQRIDRLVASSDQEYAVFLDSSKMLLGNLGMFFSPDGKR-----------------ILISTASANLPGPVLALNCTYPKTSTGQKYIVNNCQHEFHHKEFRQIRSGDEAPNSILECSKCKITKIVMYRGNKEYFALKRQLVLEAKEKLNQLPVERSIGFN--------------------------------------------------SANPLPKGLTFVYEWCDNG----------------------------------------------------------------------------------NEILGYGCNSDG--DACCICPQIVPGLFVISCDPTILRQICALYGYEIKVYDIEYDTNNFAAWELLTDYNVCRPGNLVKIITHTVSNAERLYN------KFKYNHSSYKYVGVSQYFNIVTQIMFEMIIMKNSARYVNKEPMDYSVPKTTMAWFDEYLNVYPKYADPKVP------------IITFDIETVSSDPHRVPTGDDKDDILFTVSIHHTHTNVLYTLIYMPLKMRASDMVRCIRDDGYDVIPDKSVDASKCSN----------VLECFNDERSLLVRTMDLLTLKPKLHILFGYNSIGYDIKYLLMRCAFYRIRVDRFIWREGYSFGCEQMHLDLFRIIVMRYRFKSYKLDDVSREILKDSKTGVSAVNLRYTFFRMMKYGRYFKTDES---------------SAKIPSIKDTLEYNNADTLLVSKLESRTKCIPFIISRAMDCQVPLTSMNTNYNKMQFKLWSECFVVGISLRIFMATFKQPNAALKLPIASAYSTNDMIDVNVSLTDKLNSTSSDVDFSSNGHGDLSESTYARYSSKKSQFPGGANFCLGE-KNVDNVQMYDYVTAYP--ILMDRKNISDETTTVLAASILLMLYP-----------KIQHKETFKVYDYMAHNGSTKSETIILYYQYIYD------GLYCGGEFAFTVEELKKRQDSPVIVIWEGRRGILSRIIAHFSAVRAATKLKRKALDEVYDILIEKKNELATKQILMEEYNQQQLDLEVGGGDDIGCDVTDGTFGFDDDDGDDDAVDGCSSSNIADVIWDGGDDAFGFEDDDDNDEIGEVGKSSDVESGDVDDGACIFGIEDDDDNGSTLENEAVSADVFGVEDFCCDEVEAAFGSGDCDDDMEVCNFGFEDDANVGEDVCDFGFDDCPDEMDGNTTVDDIVAVPNQSVTQVFENQPPLVTRFIQTFGNLCSINESELETESDPMSIISELAEIIALERNNTANSYDLQKSIVSSIYGCIGKMIVVVAAVITSMTRSTLLASAQYCRSLGCNILYIDTDSIMITGYNGDLSAELNRRFPFMEMEMKLARKCMFVKRKTYYKVEDGNFKYGQNVNGPSAWRECVEYFYN-RNTITTNPDIYQAFFEFFMSIYKKLQSFDAVTP-----------------EFLQYFTQTIKTKDEYKTMTVAKRFKLYMAEKYPALAGASKHSIYYY-LDNSVLIPCLRPELDITSKDDLR-FVNLFKYYQNMYTTIFNLIKFHIKKNNEPYNITLSSKYILLLMLKGFLDAYEAT-------FLTHAVTCKSDVCNNISLSSDADQIFTEPIHTEVLNSDPEMLLVLHD--------MADVTPFKIVELRCQATRRSYGLFDHYFYVIDDK------EVHMGIYRKGRILPNGTTKG-SHIITTYEICNLCYDKLMLNLISNDDMRLFSSYFPILNCESLCTGFSI------QSAMIISIPFIVVLIIKGYYLWA-VILFLASIVVLLAYSKYLFSRTRDKKCSHLESR----- PmNV -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNNSTTTTTKLLPFREYETSIRLPISETIYQHIYN----------------------------SMVNEEDKNDIILYFEDDKRISNNKCQYKHINTKKCLMKILYYNDRVYFIPYVRKSSDEYLVALPEVFSVNSIIIRHVIF-EGIIQEDFKMRIALEKCTTNKMGLVYSLTAEVEYSQMAFVYYRNSTAVEEAF-------------------FNELINRVFIHLEDMDTSTLFKVPDSTTIIDVASRVFKHLNSS---------YTPSKSEAIVFKYDGFKGKIVMTANGLSYYDSLHNKYTGNCFALNDFR-----------------------------------------------------------NIFFQVEVLEDNFICLVDILGGYTSNVTTNEMQHIPKPLEVMKFFDWMR------------DYLFTQYGLSEPYQLE-------------LDSVPVQQFKLFLQKPINPEALPVCN-----------------------HRHDGYIIIES-------------DKLFKCKIPTIDIVFVNGYMEVSDRVGSICNEYYPKYDNDSKKIY---------------------------EVCQKATGTGYNVLRERFDRSVPSTNEQFEAFEKELKFLRTAISASTDKKLLKLIENMGKSIKINMNSDCS-----------------DYENDDMLETMESGIFSDDDEDMDVDHKDYSTITDDEYCTINNEEDEDDDSQCSTISSKIRRSISTLSSTSGKSKFNLDKLNVLFKSSDNVPNNIKNDDMMIIKFTNFAFAVPPIDSVHVEEECPKIDTSIKIS----------CIHKFTKIVEQTRRGDEAFSVIMKCTLCNFIKR------------------------------SSMSVRYVNSNWKEWLSQVPDTPKSNYLYITDWQVDG-----------DDYFGVGINKMTRKLEKFKVANLSSGLYVWALNQQTLKELLVNFTISDITYVKQNTEYMNNHVTVLDDIMK---SGRYQPKWKLFKLHTTSFN---------ESKSLHYSISNSTGFLQHIAVLGQWNLSTFMMMEFHVKG----MDYIYGKYINERLQYLENIESNFN-------------LFTTVYDIETVSNYDHRIPTGNFFADHIMSVTFIKGTEIITLFNIPLTFDHQLDAAKSIIDKISAKDYYKMETR--------------TTLVYNTEWDLLAKLFELFESIDEAYICLGYNSRNYDMPFLLTRAIYLGMPQVSKFYYVNGILSY-GMNMIHVDLNQVLVKYFAQELSSFSLKNVAKALLEDDDTQKVDFNARNLRYIYQFMIESGHLNNGKYDNVLCRQPNPWSISLDIMAKYNEMDCLVVLALWDKLQYEHFITY--ASRVFFLPLVRLGLSKLNEYLSTNMIYEGLQQNTIFAHHTN----SSLTMNSQMMYTLN-------------------------------IENISSDANKAFHGGFNERKNR-GCYHEVHAMDARAYYP--ELISGMNLSHETASLLRIKDLKLIARGCTNFDESFKIMKFCTHKAINQNIKPPSTTCENIINAIASAAYVH------CMVDNCPTIKFEDLDKYNDMDKVVVLHKTHRGILSKIIEQRNTLRNIAKSSKKEISSHIDACQTLLSEYKLKNR-----------------------MGSNKYNDDEEEEISYSDD--------DDNNDDNEEEISYDDYDDDDED-------------------------------------------------------------------------DMIINKVYSIEDFKIPK-----------------------DKHTEEAVYMVTKHI-----RLLEKKDFNKFEDAIKSLELYIEDLKLEFTRLNSHYRNMKLLNNSIYGLLGASYG--------------------------------------------TIKAKNLAAIVTMLGRHFIVEASRIGNMINANMIYSDTDSVFFSISNAIVKNSANRIISGVNRLNANVVLNDKVY-KDMFVLGKKTYIATCNDMIFSRGINKNGPNLWKTMMDRFYVQFIKNRESLNFSGVYDILFDMYMDTYKLLYDNRNAILRLVSIRTRESYKMNTVVTKLIDRISLE--KPDYKFDSKVYCFYRIFG--DISNTHLALDIEMDDTPIEEINLYKFYSNIVST-------YYLIFAYAIEQTNQEKLGYVIKYPMQEFNKANKYSFIKALAAIKEMPTRDNDKQPTMTDMKKYHIIIYSKSIKNTLNLIIHNYIAIPELN----LEIHPGRFYYGTHHDIGKFKNRSEIITEMYFCKDCLDYLLYRARSLFDI----WYYPILNCETLTRGLTQHFPLSIQTVLITGIFTSFIIGISNPIFFALTFFFILILLIYNNTKIKHFKASCIHYE----------- ; END; [ The following blocks are output data for analysis step 13976 ] BEGIN TREES; TITLE Nudiviruses_Nudiviridae; LINK TAXA = TaxaForAnalysisStep13976; TREE Nudiviridae_ = [&R] (((('HzNV_1':0.00510322,'HzNV_2':0.00536808)1.0000:0.78109452,PmNV:0.86482173)0.9870:0.11536671,(OrNV:0.65896409,GbNV:0.58083464)1.0000:0.48551018)1.0000:0.13028412,(CuniNPV:1.03607766,(NeleNPV:0.66785751,(AcMNPV:0.5403796,CpGV:0.52169169)1.0000:0.17407005)1.0000:0.1945913)1.0000:0.23868073); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr75738] END;