#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 20, 2025; 6:55 GMT TreeBASE (cc) 1994-2008 Study reference: Yang Y., Lee D., Wang Y., Hu J., Li W., Leu J., Chang G., Ke H., Kang S., Lin S., Kou G., & Lo C. 2014. The genome and occlusion bodies of marine Penaeus monodon nudivirus (PmNV, also known as MBV and PemoNPV) suggest that it should be assigned to a new nudivirus genus that is distinct from the terrestrial nudiviruses. BMC Genomics, 15(628). TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15937] [ The following blocks are input data for analysis step 13977 ] BEGIN TAXA; TITLE TaxaForAnalysisStep13977; DIMENSIONS NTAX=17; TAXLABELS AcMNPV AgseGV BmNPV CpGV CuniNPV GbNV GpSGHV 'HzNV_1' 'HzNV_2' LyxyMNPV MdSGHV NeabNPV NeleNPV NeseNPV OrNV PmNV SpliGV ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M22860] TITLE Nudiviruses_DNA_polymerase_matrix; LINK TAXA = TaxaForAnalysisStep13977; DIMENSIONS NCHAR=1434; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] AcMNPV ----------------MKIYPYNELKTRFAEYAKPGE----------------------------------------------------FNITSADTFRIIRLH------YDEKQGCLFAFCNTNIKER---VLQFYFKVKLNLYSYKQCYDKHIFPS-CRNKCISYTTFVAPGVEGNYLNKINVIKYERNKAAPSDNAACLDKFL-HNVNRVHMQTPFVEGAYMRFKKTQRCQNNYVGGSTTRMFNLQHFNEDFELVDEMTLT----------------SGIMPVLSCYDIETHS--DGHNMSKAS--VDCIMSIGFVVYKNDEYAKFCFMYHK---------------------LPTQIPETYDDDTYVVMFQNEIDMITAFFDMIK-ITNPDVILDFNGDVFDLPYILGRLNKTK---------------------------MLLKRYDLPAAAPTTKLFINKLGNKVDTYYFNYYIH--IDLYKFFSSDSNQ--HKVENFQLNTISSYYL--GENKIDLPWTEMVKMYN----TRRLDVIAKYNVQDCMLPIKLFVKLKMADSV-------------YSQCILHRLCTDDVICNISHLISVACFYAAITNTRINESTGKEEPDPYFFNKNDLSIISG--------------------QFKADKAAAGISNLKRKL---------IPLKNIPKD---------------AINLGPANQTVKYKGGKVLK----------------------PRAGIYKNAFSLDFNSLYLTIMIAICACLSNLILCEDGNVYLN-HNSRAIVVKLLLKLLSERC-----------------KFKKNRDNQSESAFLYDLYDQKQNSVKRTANSIYGYYGIFYKVLANYITRVGRNQLRLAIS--------------------------------------------------LIEGLSNDPEILEKFNLGSI----TFKVVYGDTDSTFVLPTFNYNEISNETDT----LKQICTHVETRVNNSFTD---GYKMAFENLMKVLILLK---KKKYCYLNSENKIVYKGWLVKKDMPVFMRIAFRTAVEQILRHLDMDKCLQSLQ------TSFYEYYDEFAKS--------KSLTDYSFSMTYNDNPGKKRKSTDDN-EGP-SPKRRVITVAWHCREILVN-KGTDFVPGNGDRIPYLLIDIEGKVTEKAYPLRLFDP--VKMRISWIKHMGILCTFMNELLEIFGDE--QKDKIAKCFTAIMQKYMQNQLYDRKEPVLVKINQKK--CSVKRKRDDDDDNDDDDDDD-----CDSSDSENDTQCANNTYKFCLYKMKK------------------------------------------------------------------------------------------------------- AgseGV ----MDDDYLYCDYDEIDIPPIIRSSPKRKLYDEHETTPVLKKERDNSSVEKDGECSSKYKKEPVCETSEDFEVCSNLLEKVVKSDRETAHYSANCVFKITKLH------YSSSFLYIFLTGND--------NVQYYFKTYCPIYSYKLCT--HRFQS-CRFNCQSYKSLVVTGLKSRECHRVNVIKMERSKCSGEK--YLLDEMC-NDVNRVQMQTGIYEGDYVRFKDGITVDENGC--------ATG-AVSELVKVTMEELT----------------QPIDPIVGSYDLETFT--DGMRFSNSE--VDPIITISYVLRKQNNNMSRYCFINT------------NGKRFRLNDVYLANAEYCDGKVIVAPFNNERDMLVTFLEVLW-RTNPDEILDYNGDKFDIPYIIGRMKKLN------------------------IDEQFIQRYDLPKVSFKVTNIRTKFGYGFNSHSMVYYNH--LDIYQFIKSSYDA--SKMENMKLDTAATFYL--NVGKVELSVKEMMTLYH----EGSFGKVVKYNVRDSILPLEIFFKCQVANKL-------------YADAGIMYLCRDDYLRTISHKINLALFSRSIYNRNE-----NGDADPYFYNKFDLNKIMGRKKSMARVNDDDDDDGQEAAAAEEEGEEIDFTNLSRSH---------VPLHLIPPD---------------ARKLCPLKTRMKYTGGKVLS----------------------PNPGYYETTFTLDFSQLYTSIMIYITACLSNLFFGSDGYLYLQ-HNENAVTTKFLKEMASKRA-----------------IWKQEMKKHAPGSFTYNLYDSWQNAAKLVCNSQYGWFGMFCKPLANLITQIGREKLGEAKE--------------------------------------------------KIECLSGNEEIMKKWNLTKM----KLSVVYGDTDSNFVAIDLEPEEFKRLGVD----G-LKKMILQDILAPVNAVWGGSFKMELENIMKCMLIKG---KKMYMCLKENGSLYKRGFNVKKDSPPFLRIIFDNVIKRILTNHSLDCVLKNML------SELKTKRDEFCAK---------KCDQYSFSQTLNEDKK-------------------TTIAYKLYMELKES-SNTKYIPASGDRIPYILEDKRSNNVKDKAWPTQIF---EDQNPSWNKHLGIVCTFLNDIMSMLRN----DTLFVYTFQIICDYYQKDQVYDIVYPVLKVMTQSK--IKDIMCKELNVKDKKKLDEKQMEDCFERGVHKYIHTHEFTMSKTPPKYRINVEGFNDDCPACNGRGISAVKKNMSLELIENEVSKKGKKKIVNKVEEKQAVVVDKKKLVKEEVVILKKRKEKKSVVG-GKTKLIDKYDLKEEDEWWLKPKNKGN BmNPV ----------------MKIYSYNELKTRFAEYAKPGE----------------------------------------------------FSITSADTFRIIRLH------YDEKQGCLFAFCNTNIEKR---VLQFYFKVKLNLYSYKQCYDKHIFPS-CRNKCISYTTFVAPGVEGNCLNKINVIKYERNKAAPSDNAACLDKFL-HNVNRVHMQTPFVEGAYMRFKKTQRCQNNYVGGSTTRMFNLQHFYEDFELVDEMTLT----------------SGIMPVLSCYDIETHS--DGHNMSKAS--VDCIMSIGFVVYKNDEYARFCFMYHK---------------------LPTEIPETHDDDTHVVMFQNEVDMITAFFDMIK-ITNPDVILDFNGDVFDLPYILGRLNKTK---------------------------MLLKRYDLPAAAPTTKLFINKLGNKVDTYYFNYYIH--IDLYKFFSSDSNQ--HKVENFQLNTISSYYL--GENKIDLPWTEMVKMYN----TRRLDVIAKYNVQDCMLPIKLFVKLKMADSV-------------YSQCILHRLCTDDVICNISHLISVACFYAAITNTRINESTGKEEPDPYFFNKNDLSIISG--------------------QFNADKATAGISNLKRKL---------TPLKNIPKD---------------AINLGPANQTVKYKGGKVLQ----------------------PRASIYKNAFSLDFNSLYLTIMIAICACLSNLVLCEDGNVYLN-HNSRAIVVKLLLKLLSERC-----------------KFKKNRDNQSESAFLYDLYDQKQNSVKRTANSIYGYYGIFYKVLANYITRVGRNQLRRAIS--------------------------------------------------LIEGLSNDPEILKKFNLNSI----GFKVVYGDTDSTFVLPTFNYNEIFDETDT----LKQICTHVETRVNSSFTD---GYKMAFENLMKVLIILK---KKKYCYLNSENKIVYKGWLVKKDMPVFMRIAFRTAVEQILRHLDINKCLQSLQ------ASFYEYYDEFAKS--------KPMTDYSFSMTYNDNPGKKRKSADDNNEGP-SPKRRVITVARHCREILVN-KGTDFVPGNGDRIPYLLIDIEGKVTEKAYPLRLFDP--VKMRISWIKHMGILCTFMNELLEIFGDE--QKDNLAKCFTAIMQKYMQNQLYDRKEPVLVKINQKK--CSVKRKRDDDDDNNDDDDDDG----CDSSDSENDTQCANNTYKFCLYKIKK------------------------------------------------------------------------------------------------------- CpGV ---MLLSKRKAEGVEYEPAVKAIKLSQETLMGDNTNFKVCLDVN----------------------------------ELIPAKLVSAGMCFNNTHEFLITRLR------YDNGFLLLFLTGVN--------NVQLYYKTPCTIHSYRRCY--HMRTP-CVNKCETYKSMVVTGLKAYQCNRINVFKVDRARCNNDDA-MLLDRFC-TDVNRVQMQLGLCEGDYVRFKNVVRVNEEGL--------AIG-PLGNVEKLKVEDVR----------------NPTKVIVASFDLETFT--NLNSFSNPK--VDPIITISLVVKTHDDTPKQYCFINT------------QGRNFTLDDP---VEERVDGEIIVLPYHNERDMIVAFFTLLC-KSNPDTILDYNGDKFDIPYWTQRAIILD------------------------IDPKFLRRYNLSPVEMNTVEVNTKFGYKLNNHFMKYFNH--LDVYQFIKGSIDA--SKLENLKLDTAASYYL--KVGKVELPVREMMRLYN----NKQFGKIVKYNVRDSLLPLNMFLKCKMDNKQ-------------YADASLLYLTNDDSHLTIYHRLNLALFHRAISNINE-----AGRPDPYFFNRSDLSKIMGGNKR-------FAADEKEDKEVENEGELVDFTVLGRPP---------VPTSQIPAD---------------AIPLCDLKTRIKYIGGKVLS----------------------PKPGYYRKTFTLDFSQLYTSIMIFFTTCLSNLFVGANKKLYLQ-INQNAITTKFLKEMANNRV-----------------LYKQEMKKYEPDSFEYQMYDSWQNAAKLVCNSQYGWFGLCCKPLANFITAQGRSKLEEAQR--------------------------------------------------IITELSENEAIKTKWNLSKM----KLEVVYGDTDSNFVSIDLEREEFERMGGD----VGLRRLIMEDIMKPLNDTWKGAFKMELENIMDCMLIKG---KKSYMCLKENGTLYKRGFNVKKDSPLFLRQAFDAVIFEILNNHSLDCILNHLV------SSLKKKRDEFCVA---------NCEEYSFSQTLNETKNGGTGV--------------VTIANELAIQLRND-ANTKYIPSSGDRIPYLLIDKLASTVKGRAKPTQLIN--ADDTINWSKHLGIVNTFLNDIMSMIGN----DTLFVYAFNEICEYFQKDQCFDVLYPNIKTLTNSR--IKDILCKELNVKKKKDLTDDKLNDILRNNEQKFIHKYEFTLNKRRPAYTINIERFSTDCPKCNERGVSAVQKTTSLELVVEKQSAS------------------------------RKRPSKQN------------------------------ CuniNPV -----------------MFMKKCSWEEVRNYVDSTRCEY---------------------------------------------------TVPANAVFLITKIR-----CISDERPNSYLQPSE------VHLYLRNPFIGIKVILYSVPIVGYAFCN-CERKGEVDCKLCVPCTPVLAPDHINPVIKRVRQTTNGVRNYLCDSNM-SDVERFMNYYKIFESSYVAFTTHLTPQNGTVRGLNIAQVYVPTLALPEEVNGFQIAYNPRGPKKMTDDQLVPLKPIKMTMASYDIETYNSSKHHRMADPTIEGDTVFSISIHYYESAEVQEYFQLYLDPN------------AVIDSEYRPTVDTFKEGTTIRVILCKDEAELMDNFITLID-ALNPDLVVDFNGHGYDIPYMITRQSGDPK-----------------------LNTFKFMRYGVTDP----TINFVKNDSYVDVNRITSSSYQMLDMFKFARKWHPG----ETSFKLDDLASKYL--GAKKISYDFKVMKVDYE----QGRPHLIIEYNMVDAILVTLLSLHLQAPERL-------------FTKARMTGYTMNYALDEGAVKAYNTLFFYRGLEMNQIYTFTDSLRNKLSPEVLGGRRQRYDAEILN----ISFKRAIEEERKRSPERQDELDDLERKS-----------LFRISTAQ----------------QTWGDQGNTKIGGGLVLP----------------------TVPGLHEHLAIMDFNSLYPSIMLAERVCPNNIAVESNGDLLLVPMPKENLTSSIIKEALKNRK-----------------FHRSEAAKYDKDSYEYMMHDAAQGAYKITANSVYGFFALRFPPLGNFITKTGRGKVRSAVN--------------------------------------------------YTTEYWNEQYG------------LCAFFVYGDTDSIMFKFMQPTSGVTVDPNA-------FPGLIEHFSAGLAKTVGVGYNMALELIVRSSVFTHR--KKSYVFHIADNIYKYRGLLVGRNLTRAIVRCYKRWIEYTMKLCEEGALSYSLATDILLEDLRKIQEEDFSVDSLSRTISYSGKSGSLIANSLVGQHEAAFGYTPTVGDRL-KFISATNIVYEHGKLLKGK-LTANMTPTRASLLYNFALKLKLERNQLEVQHREKFNNMRTYNSYFLKAERLLDSITELIQTPSKARKLFEDLKKIVDSVIPYNLLTDLFDPDIHRVNWSIYGRQ--GHTLVSVLGPTFDAHFPESPNEVERIRNELDEKFERCSYPTTARLYNTKGEVVVSKTRGYRHISAKQLVQEFVACRNELEVEDADEIQFDRSEVAQCNGERAMAKVRAPRRSGPPVVQHIPAKLAAPSHDDEEFTEDEIRTWLGLKM------- GbNV --MEKSDIIFKNTNIKKNILNYEFGFKMRRAVTLWDDEAYIYVFDWITE--------------------------------------EEEVSNEGNGFRNRDVLIAIGCDKNYNFKKIKLSLKPSLFVCTSKFEVLKTVCVNKFAYEQKFINIINTEMTLSCNNYTVLDTLTNAQNVGQSKLIKIEFDTVKDLKYLFNFLKNNNQF-YNFVSTTFYWNVTKQIQFELYYKYKKFYNIIH------FWVNKNLDIKEYSSSSPRSN---------------LHLTLPLITFDIETVS-DDANRLPTGEDENDILFSVSIHYVHTDTLYTFVYLPCECE-----------NKKNVLEKSYYEYKYPYVKTHHTRIFTNEKDLLIATMERLTIQGKLHYLIGYNSLKYDIKFLMMRCVFYN-----------------------------IYKDNFFYNDGIQFLYNQIHLDLCDITRIQVKLNN-YKLNTLAEEKLKESKVDVDSVLLRHTFRRIQ--DSNICHSYDENEILNKKNNTNYPCVIDILYYNNKDTILVSQLIKHNNVLDFISNFLYTVSEGMYFKNYNGIKYRVINQCTTTALKNNIFFSFFKSGKNNIAIPFITKRDDKLLTDYVFTQYDQNIN-------------------LNNTIENKTSKKKFPGGAN---------YCRGIYITS--------------KPVVCSDYKVAYTTLIDRLN---------------------LGDETTGIFPASLLLSIWNFLNAISETFSLENDYVLFDYKTHSG--FSQSQTKILYHEYVNNGIFCG-----------EKFSFTKENLEKRGNSLVIIIYQKTRSVLANVTSIANDYRALLKQKASFYDNLYNELENLSNNLN-------------------------------------------------DLYGEFEEENEFIDGDEDDENSEKDYASWLVTDESKFIYTIDKRLLSNLNKQD-----AENEVKTKMINAASRRDAFESLYYLAKINNSSIYGVLG--------PICPYVCAAITCIVRTSLLSSAHLLQTTYPDLVVRYMDTDSMFFELC------DSFKNYKSQIDYFINLKFPYLTLESHVLAVCHFIKTKTILKKKEHSDNIKYTQHVHGPEAWKTLVKYVELHGKNVKTDTDIYNLFLNFYIYIKEKHISFFYHTIKVKEN-YATNVPAKELKNYLAEHFTALKDNFKQT-------------IYYKLLHSDYNKTLYRPVIELNDQNEVSKTVNLYKFFLPMFMIVYYIVHGYLSTNNQPFYVYLSPKEMLKMNFKAYLFLINDNIEDSLLEDITDKDIQESSTLIEEEES------------------------------------------------------------------------ GpSGHV ---MPNDNADDDDDAQPDIYSDIYQIHDTKLQVFG----------------------------------------------------------HDLELNISCVN-------SLGKKHLFNINHGIFTDVFIESFSNNDFNIINDYFIQHKNIDLNDITMRNVILEYHTQLIPFTKTQIPMWRLRIYKKYLEDIEYCSKNMNRRVFCNSQFDDTILMIQRNIGIFFKFNRFINDDKPYTRSYDNNNVCVYSDVFYDSITKPKIEIK---------------KFFPYKLMSIDIEVYNP-NPDSFPDASREECKIIIIACAYLETKTTDIFYTLVPQWD---------------------FMTDPSAEYKRNYIRCKNEVHLLIQFANSIN-YNNVDIMTGYNMKNFDLMYIYNRMKLLG-----------------------LLRHTVNWNMQKKQLYISKCQKYSNQQGTRDSINTNIFGFVIIDMFEYISSN-----FKLRSYKLNDVVGVFLRHGEKKLDIDYKNISVFHDRG-SKEDCHHLLDYCAVDAELCNSLLINRSTYSNV-------------FAVAHICHIPIRYVIDRGQQIRIYSMMCEYIWRQDIYTIPLVTGRRVQSKYNYEGARVIEPKK----------------GFYNTAIATLDFASLYPSI-----------------------------------MIGYNMCYTTLIQGITTP------------------------PGHVDSINLVKYNGLN-----------CRIVPGTSRVAFVDCSEREGILPSILKVLLQSRA------------------EVRKKMKTITDKDELALMDSMQLGFKLCANSAYGYMAASTSKLPCIDISSSVTCIGRFLLT-------------------------------------------------AIETICKEK--------------FKKDVIYGDTDSVMVDTKLISVHEA------------LSLGKEMAKICTELLNLPSLKLEFEKVYMPYLLIC---KKRYIGAHWTKPEMYDKIDTKG--VETARRDNCKLLQIILKIIIHDSMNNGLD------KVFEKIENELLPFS-------ELWKSYLNDNCFKLDKQDK-----------------TKITSEIIEKFIMSKKYTKMDYVSIQPHVSIIKRLSNRQFNHGERIEYVIASKVLILTDKKQPDKLLSDMAFLPEEVLEKN----------LYIHIPYYINGQVLVPALRFIEPMGHKYVIIFISLLKRLFPRMNLTTYKKYNNVINDNKSTVFIDQKITKFFTNK------------------------------------------------------------------------------------------------------------- 'HzNV_1' -MMYADEEHYYNNKISDESIKWTDRVYVLDWASTKNQIYAFGVDESGDS-----------------------------AKLMINNVKTSLFVFAENEMHLTPLLNLRHVDLERPIRELSSFNFEIPNNTLLDTLIQTTSVQYKTFQVPTCSFGDSQNLHKLLNTTALKNHIKTTATWSLELLIVFEMACRTSQASLEECSVYDVFV-DANLARYEDLPKPKIDIVAFDIETLSSFDYRLPLGDYKNDILFSASIKDHGTNTMYS----------------FVNIPVPVDFDYTTTG--SGTVAKRARLEQTDTVDANSESVRAYTERLKSLMERD-------------------------FEATRNMQRKLVVVHDEVDLIRLILQTLD-RKRLYFLLGYNSKGYDMTFLIKRTAYLCLP-----------------------EFKNFTLYRGMPVYGNHMIHIDLIKIFRQLYPEVGKLS--LDTMAKLCLGQAEGKVEFNAINIRHVYRQLL--ERG---LPNDECHFEKF----NIDLATIVHYNDVDTELLCRLWDSLSYDEFLPKLCKSHLISIVRYTQCKIGEFINNKSVYSSLTDGKILTLHKSIGGGLMIT---TNGSVMYTYNQNQVSAGVNEASYGG--GFNMRIAREVFTNCKVNDVVAYYPKLKQGHNISYETIAIVPVHVLQRLRPILNPNHPCRYFTFTVHKCSKEEVVNHANTRNLINMLENN-------CDEFSSLDECCKNLNSNDRVLILSVERKPSLLGNMIHKQNVLRSRAKDLKKE-METMLTQVQIRLDAVKNRGDDYQ----------EVVFDFDDDDDDEEEEDEDEDED--ENKDEDKEDDKDSDTKTEDKSKTETNTESKSNTESNTES--------------------------------------------------KTDSNTDDPSKPENMELCDTGSIFNTADVDKSSDMKMLVPKFKLLTFDEINRC----NDVQLLTDYEVKLKGELSRINSLYRNLKIVNCSYYGLL---GSDYGALSGRLVAAALTTLGRKYIIDMARFAHVQNFKAVLIDTDSVFVHNGDS------NLENNPLPEFCKTLNE--ELELTAKMYQFIFIMAKKVYLAKCKGEWISRG--INKNGPTIWNDVIFTLAER-YLIERVPISSKMLQDILVNEVYMYIAERARKDRSVV--LCMMSTNREKVDTANTPIAKMMRAVVED--EPDYIFGEKQVKYFHYLKNKPTDVIFEAAHHLNDVH--ISQLNLYKFVSKINTTIYQILSKAIYDANVKERGVHATITMAEYNIDSMAAFLRVNEIMKGWED------------------------------------------------------------------------------------------ 'HzNV_2' -MMYADEEHYYNNKISDESIKWTDRVYVLDWASTKNQIYAFGVDESGDS-----------------------------AKLMINNVKTSLFVFAENEMHLTPLLNLRHVDLERPIRELSSFNFEIPNNTLLDTLIQTTSVQYKTFQVPTCSFGDSQNLHKLLNTTALKNHIKTTATWSLELLIVFEMACRTSQASLEECSVYDVFV-DANLARYEDLPKPKIDIVAFDIETLSSFDYRLPLGDYKNDILFSASIKDHGTNTMYS----------------FVNIPVPVDFDYTTTG--SGTVAKRARLEQTDTVDANSESVRAYTERLKSLMERD-------------------------FEATRNMQRKLVVVHDEVDLIRLILQTLD-RKRLYFLLGYNSKGYDMTFLIKRTAYLCLP-----------------------EFKNFTLYRGMPVYGNHMIHIDLIKIFRQLYPEVGKLS--LDTMAKLCLGQAEGKVEFNAINIRHVYRHLL--ERG---LPNDECHFEKF----NIDLATIVHYNDVDTELLCRLWDSLSYDEFLPKLCKSHLISIVRYTQCKIGEFINNKSVYSSLTDGKILTLHKSIGGGLMIT---TNGSVMYTYNQNQVSAGVNEASYGG--GFNMRIAREVFTNCKVNDVVAYYPKLKQGHNISYETIAIVPVHVLQRLRPILNPNHPCRYFTFTVHKCSKEEVVNHANTRNLINMLENN-------CDEFSSLDECCKNLNSNDRVLILSVERKPSLLGNMIHKQNVLRSRAKDLKKE-METMLTQVQIRLDAVKNRGDDYQ----------EVVFDFDDDDEDEEEEDEDEDEDKDEDKDEDKEDDKDSDTKTEDKSKTETNTESK--TESNTES--------------------------------------------------KTDSNTDDPSNPENMELCNTGSIFNTADVDKSSDMKMLVPKFKLLTFDEINRC----NDVQLLTDYEVKLKGELSRINSLYRNLKIVNCSYYGLL---GSDYGALSGRLVAAALTTLGRKYIIDMARFAHVQNFKAVLIDTDSVFVHNGDS------NLENNPLPEFCKTLNE--ELELTAKMYQFIFIMAKKVYLAKCKGEWISRG--INKNGPTIWNDVIFTLAER-YLIERVPISSKMLQDILVNEVYMYIAERARKDRSVV--LCMMSTNREKVDTANTPIAKMMRAVVED--EPDYIFGEKQVKYFHYLKNKPTDVIFEAAHHLNDVH--ISQLNLYKFVSKINTTIYQILSKAIYDANVKERGVHATITMAEYNIDSMAAFLRVNEIMKGWED------------------------------------------------------------------------------------------ LyxyMNPV -------------MRSANLMKWSALKTQLQAGHDAGKAP--------------------------------------------------VSIGPEDTARITRMT------YADN--YLIVFMNARLAKENHRLYQFYAEVRCDLYSYKSCYATHASAT-CYRNCISYKTFVMPGLRDVHTDKLHVVKFKRSDEKRDKN--CLDGYL-TDINRVHMQTSLLEGQYVRFKKVHTCRDYRLSHTAK---DVHAFETMLERVQVSALS----------------HEILPVVACYDIETHS--DGQRFSAPD--VDFIISIAVVVRRDAGDTRICLFYAPDDPVDLNSSTGSQTAVNSSTGSQTAVNSSTGSQTAAVHFRAERDMIAAFFQLLP-LLNADVVLDFNGDKFDMPFLTGRANKLCGRAE-------------------AARVTKIARYDLSPASVVTQLSYDKFSNKLHSHYLTYYIH--IDLYQFLSTDSEH--NDLENFQLNTVAEHYL--KTGKVDLPIAEMLQMYR----EKRLSRIVEYNVQDCVLPVELFLKLEIADYM-------------YTQCMLLYLCTDDLLRNISHKITVAYFHLALTNT---VNVADSTPDPYFFNKYDLSVTSGRKRAF--------------NESAPDANTIDLSQLKRTP---------VDAARIPPS---------------AVKLCSTRQSCIYKGGKVLS----------------------PKPGFNRWVATLDFNALYPTIMMREGVCMSNVFIASDGNVYLD-KNVDAVNPKLLKTLSEMRI-----------------RYKGLRDQCEYNSFYYKLYDKIQNALKRIANSIYGYYGIFFKPLANYITKVGRGKLKEVVS--------------------------------------------------KVEAMSDDPRILREFALSKV----NFSVIYGDTDSCFIRVLFDETELAPVR-R----QAAIRSIVQDHVCKTLNDSWCGYKMSLENIMLSLILLK---KKKYCYLNNEQRTKYKGWLIKRDMPLFMRKAFRATVDALLHNHSVACALRLLA------EQMHCRYREFGATR-------ESLADYCFSMSYNETSTTAKRRKEEE-----PARKPVITIAKHCRELLAN-SGVDFLPGNGDRIQYVLVDIKEKITQKAYPLKLFDPDSPTLQISWLKHMNILCTFVNELIQVFGN----RPEFEHYFGAIVDEYTSGQMYDVRYPVLVPTRTKP--TKSVKKKDSDSDSESDTENPVNYHSLFSMHLKKPTRTTVCAFEACPRCAQDV------------------------------------------------------------------------------------------------------ MdSGHV --MLLRPNYQYNWSDDDDDDSVNDNESEQSYRSRSPSPLP------------------------------------------------WTSSSSTVTCMISDIKT-----QAYANRVVNIKLSLMNEYGEKLLKLIQGDVFFDVYIETWNRNENIARILNQLQCYNNTPQFVDTKYTAMGYSQTPLNVWRLNIRENRLDYIYEFCQ-SSGRRMFLNTELNDALPMVQKNLGIYCDIPNVG-----DTAQIPYSSLTKPDMSTP-----------------KSFICRKLSIDIEVITPPEWTLFPDATELGCEIIIIACTRQQDDTTTYQTDILYTDS-------------------QHREIHIENADNRNFIRFDTEYQMLEYFITSID-PHNTDLLTGWNVRNFDLKYIYDRCCKFFP--------------------------DLVAKFRQWTLDGSDISFRNVTRKGQNVTLVESFGIMILDMYDYNKS-----NVKAKSYKLKDIARKYLREDKQKLDIDYKDISRFYRSG-NTKEFSHLLEYCSVDAEIVLDLMAVQKVWNNT-------------VSMADICHVPMNYVVNSGVMLRNTCMISQFVNEHTDYLLPYKHEMPFTSYEGGYVNEPIVG-------------------FHTDPIFVLDFNSLYPTT--------------MLAFN--------------ICTTTIVDMREYSDTGYPID----------------------AMPSTSSDTTPYQPTELDQVIFTTSNELKISATPYMHNVGFVAANHRRGVMPQILHNLLTTRKR------------------LQNELKKTTDDQKRKQLDAQQLSYKLCANAIYGLLGCSFSPLYNPMVAASVTSFGRFLS--------------------------------------------------YIKRKRITEYMAAEN--------IEGSIVYGDTDSVMVQIRNHTIAET------------KAIAERYAEQVTRDIGIPPIRTEYEKIFCPFLIHK---KKHYIGVMYTDNCDRHLRVEYKGNEMVRSDNCTLTTDVMRDVIDLLFFGDGDLTQKN--AAITRRLEELLAEWS------------QLYNMYREGTPVDR-----------------ELRARVVQQAIYS--KKLAKEVYTNRLPHVAVYERMKNRKQYHIGDRIVYCIANTELSDRVKPKNIIDMAYDIDEFLEDE---------QLYLAVHYYADACVRKPLSRLFASLDSQFRTQLELTLSRLFPSLVASAQKRAHKDKETAVLCKQKKSCENKRQ---------------------------------------------------------------------------------------------------------------- NeabNPV MLTYLSNEVFQELLHNDNFVESIRPLVDNKPAHSGRGS---------------------------------------------------FLIPKTVVWRITRITPI----EDAERVNKLIFSLTTNPSKHFPRNICVYVIQPKLHMWQRCYCNNFPNGECRRNCIKMKYLLAPGVDG-YENTINVFKVYKKY----GQTRTLDDFL-TTTMRLCHQYNITEGSYIKFKKDITVD------------KLPLACELSEFLIVKDNI----------------KEIKISVLAFDIEVRS--SSNRFCDATRKEDEIISISLVLKNADDSILRFCLVYCAN-----------------VKNETKRKDISVGETLVILHNTEKDLIENFFTCVE-LLNPDFITGYNSSNFDFPYIQKRMQMLK------------------------MGDLFFRRFGF--------QLEVKFGSFFQRYRKVPSVN--IPLHAYHDTFVAVGNLKLDNYRLNTVAESLL--NEQKIDLPFMEMNRLWA----LGEVGDIVRYNVYDSELTLRIFMKIDVINVS-------------YSMCEIMKISTDSLNEGIMKKLTGLVFDYAIKNTDDVD--GKKIANPYFLFINDFYMIKNR------------------SNDKNQENKMCFDKLKRTK---------MPYSAIEKYN--------------PVKLCDSDGKFVYLGGDVMD----------------------PAPGVYKNVGIFDFEGMYGTRMIKDNICETNIVITDNDTVYRL-TNRTGVVDKIVNDLKIRRS-----------------KLKTYMKTLDTSTFEYKMLHIFQNTVKEIINSMYGWHATNCKILAAEITRLARDKLYDAQN--------------------------------------------------KINNHVTN----------------YFTVIYGDTDSCFIHVMNCDD---------------PIEQLKKLENQLNESWNGDAVIEFENYCVIIILYQ---KKNYCFLTDKNVFKDTIVTKRRNKPKLARHSLDLFLRTYLQTHKIIISSQACI------TYLQNAMLDFNPS------------LFTSSVQYTEGKN---------------------SIASHCVELLKQ-HSVQTLPHDGERIDILQIVDKATTVKEKSLPLEMYD----PNVHTIDLIKFCDDHFKTFMVMLIN---------------LLPQERNLLTDEYQKIFKIMTKSD--MRCCLMSKKGKWDIVYSKSKDIRVFFNAQ----------------------------------------------------------------------------------------------------------------------------- NeleNPV MLTYVSNEVFQELLYDKNFVESIQPIVDGETAHNGRGS---------------------------------------------------FSIPRTVVWRITRITPI----EDAERVNKIIFNLTTNLSKHFPRNICVYVIQPKLHMWQRCYCNNFANGRCNRNCIKMKCLLAPGVDG-YENTINVFKVYKKY----GQTRTLDDFL-TTTMRLSHQYNITEGSYIRFEKDITVD------------KLPIACDLSQFVIVSDNV----------------QEIKISVLAFDIEVRS--SSNRFCDATRKEDEIISISLVLKNVDDNILRFCLVYCPN-----------------VKNNIERKNISVGKTLVILHNTEKDLIANFFTCVE-LLNPDFITGYNSSNFDFPYIQKRMQLLK------------------------MGNLFFRRFGF--------QLEVKFGTFFQKFHKVPSVN--IPLHAYHDTFVAVGSLKLDNYRLNTVAESLL--NEQKIDLPFKEMNRLWG----IGEVGDIVRYNIYDSELTLKIFMKIDVINVS-------------YSMCDIMKISTDSLNEGIMKKLTGLIFDYAIKNTNCVN--GKKVPDPYFLSINDFYIIKNR------------------SNDKSQENKMCFDRLKRTK---------MPFSAIKKYN--------------PVKLCNSDGKFVYLGGDVMT----------------------PVPGVYENVGIFDFEGMYGTRMIKDKICLSNVVITDTDEVYRL-TNKTGVIDKIVNDLKIRRSELKR----------AKSKLKNDMKTSDVS-FEYKMLDISQNTVKEIINSVYGWYATNCKILAAEITRLAREKLYDAQN--------------------------------------------------QINNYEPN----------------YFKVIYGDTDSCFIHVINCDN---------------PVDQLKILENKLNASWNGDGVIEFENYCVIIILYR---KKNYCFLTLERVFKDTIVTKRRNKPKLARQSSDILLRTYLNTRDIIKGCQACI------TYLQNAMSEFNPS------------LFTSSVQYTEGKN---------------------SIASYCVELLKK-HSVQTLPHDGERVDILQIVNKANTVKEKSLPLEMYD----PNVHTIDLIKFCDDNFKTIMTMLIN---------------LLPEKRNLLIDEYQKIFKLITKSD--MRCCLVFKKGEWDIVYSKSQDIRSFFK------------------------------------------------------------------------------------------------------------------------------- NeseNPV MGMVIKKSIFEKLIYDSKFLSTIRPQINGKPSPANDSE---------------------------------------------------FHISKNVVWRITRITAI----EDDEHVHKLVFALSTTLSETIPTTICAYIMKPRLYMWQRCFCNNIPNSVCFRNCIKMKYLMAPGVKG-YENTINVYKVYRK------QTRVLDDFL-TTPMRLCHQYGITEGCYVTFRHDMYIK------------EIPVLCQLNDFIIVKENV----------------QEIKTSVLAFDIEVRS--PSGRFCNAKKIDDEIISISLVMKRVDDVTLRFCLIYRQN-----------------AVFST-LQDCDTNGTLVILHDSEKEMIETFLNCIE-LMNPDFITGYNSSNFDIPYIRDRMKILN------------------------MGNLFVRRFGF--------QLEVKFGNFFQRFRKVPAIN--IPLYAYHDTILSVNNLRLDNYRLDTVARFLL--NENKIDLPFWELNRLWE----CGEIDNIIKYNVYDSELTLKVFLKLDVTNVS-------------YSMCEIMKISTESLNEGIMKKLTGLVFDYAINNVNVID--NETIPDPYFLLITDFYVCKTK------------------QDTKVVENTMSFHKLKRQP---------VPYKVIEKYH--------------PVKLCNADGKFVYTGGDVMQ----------------------PRRGVFENVGIFDFEGMYATRMIKDKICETNIVITENGDVYRL-THQIGVVDKIVADLKQRRT-----------------DLKKILKTLKSDTFEYKMLHIFQNTVKEITNSMYGWHATNCKILAAEITRLARNKLYDAQN--------------------------------------------------KINNHISN----------------NYTVIYGDTDSCFVHVKNIDN---------------PVYHLKLLEKELNDSWNGDAVIELENFCVKIILYQ---KKNYCFLTDKGVFKDTIVTKRRNKPLMARQSLEIFLKHFLQTSSFEESMFKFI------DYIKKITEVLDVK------------LYTSSVQYSEGKN---------------------SHASYCVDLLKK-HANQTIPHDGERIDILYIKNNSTVIKEKCLPLEMFD----ASKYDIDFTKFCEDHIKPFMVMFGT---------------LLNDKQKFIVENYEKIFQLITKSR--TRCYMV-KGTKFDIKYTDNKSITQYFH------------------------------------------------------------------------------------------------------------------------------- OrNV --MYRGNKEYFALKRQLVLEAKEKLNQLPVERSIGFNSAN---------------------------------------------------PLPKGLTFVYEWCDNGNEILGYGCNSDGDACCICPQIVPGLFVISCDPTMLRQICALYGYEIKVYDIEYDTNNFAAWELLTDYNVCRPGNLVKIITHTVSNAERLYNKFKYNHSS-YKYVGVSQYFNIVTQIMFEMIIMKNSARYVNKEPMDYSVPKTTMAWFDEYLNVYPKY----------------ADPKVPIITFDIETVSS-DPHRVPTGDDKDDILFTVSIHHTHTNVLYTLIYMPLKMRASDMVR----CIRDDGYDVIPDKSVDASKCSNVLECFNDERSLLVRTMDLLTLKPKLHILFGYNSIGYDIKYLLMRCAFYRIRVDRFIWREGYSFGCEQMHLDLFRIIVMRYRFKSYKLDDVSREILKDSKTGVSAVNLRYTFFRMMKYGRYFKTDESSAKIPSIKDTLEYNNADTL--LVSKLESRTKCIPFIISR--AMDCQVPLTSMNTNYNKMQFKLWSECFVVGISLR----IFMATFKQPNAALKLPIASAYSTNDMIDVNVSLTDKLNSTSSDVDFSSNGHGDLSESTYARYSSKKSQFPGGAN----FCLGEKNVDNVQMYDYVTAYPILMDRKNISDETTTVLAASILLMLYPKIQHKETFKVYDYMAHNGSTKSETIILYYQYIYDGLYCGGEFAFTVEELKKRQDSPVIVIWEGRRGILSRIIAHFSAVRAATKLKRKALDEVYDILIEKKNELATKQILMEEYNQQQLDLEVGGGDDIGCDVTDGTFGFDDDDGDDDAVDGCSSSNIADVIWDGGDDAFGFEDDDDNDEIGEVGKSSDVESGDVDDGACIFGIEDDDDNGSTLENEAVSADVFGVEDFCCDEVEAAFGSGDCDDDMEVCNFGFEDDANVGEDVCDFGFDDCPDEMDGNTTVDDIVAVPNQSVTQVFENQPPLVTRFIQTFGNLCSINESELETESDPMSIISELAEIIALERNNTANSYDLQKSIVSSIYGCIGKMIVVVAAVITSMTRSTLLASAQYCRSLGCNILYIDTDSIMITGYNGDLSAELNRRFPFMEMEMKLARKCMFVKRKTYYKVEDGNFKYG--QNVNGPSAWRECVEYFYNR-NTITTNPDIYQAFFEFFMSIYKKLQSFDAVTPEFLQYFTQTIKTKDEYKTMTVAKRFKLYMAEKYP----ALAGASKHSIYYYLDNSVLIPCLRPELDITSKDD--LRFVNLFKYYQNMYTTIFNLIKFHIKKNNEPYNITLSSKYILLLMLKGFLDAYEATFLTHAVTCKSDVCNNISLSSDADQIFTEPIHTEVLNSDPE---------------------------------------------------------- PmNV MSVRYVNSNWKEWLSQVPDTPKSNYLYITDWQVDGDDYFG--------------------------------------------------VGINKMTRKLEKFK------VANLSSGLYVWALN----------QQTLKELLVNFTISDITYVKQNTEYMNNHVTVLDDIMKSGRYQPKWKLFKLHTTSFNESKSLHYSISNSTGF-LQHIAVLGQWNLSTFMMMEFHVKGMDYIYGKYIN-----ERLQYLENIESNFNLFTT----------------VYDIETVSNYDHRIP---TGNFFADHIMSVTFIKGTEIITLFNIPLTFDHQLDAAKS----------------IIDKISAKDYYKMETRTTLVYNTEWDLLAKLFELFESIDEAYICLGYNSRNYDMPFLLTRAIYLGMP-----------------------QVSKFYYVNGILSYGMNMIHVDLNQVLVKYFAQELSSFSLKNVAKALLEDDDTQKVDFNARNLRYIYQFMI--ESGHLNNGKYDNVLCRQPNPWSISLDIMAKYNEMDCLVVLALWDKLQYEHFITYASRVFFLPLVRLGLSKLNEYLSTNMIYEGLQQNTIFAHHTNSSLTMN-------SQMMYTLNIENISSDANKAFHGG---FNERKNRGCYHEVHAMDARAYYPELISGMNLSHETASLLRIKDLKLIARG------------CTNFDESFKIMKFCTHKAINQN------------------IKPPSTTCENIINAIASAAYVHCMVDNCPTIKFEDLDKYNDMDKV-VVLHKTHRGILSKIIEQRN------------------TLRNIAKSSKKEISSHIDACQTLLSEYKLKNRMGSNKYNDDEEEEISYSDDDDNNDDNEE--------------------------------------------------EISYDDYDDDDEDDMIINKVYSIEDFKIPKDKHTEEAVYMVTKHIRLLEKKDFNKFEDAIKSLELYIEDLKLEFTRLNSHYRNMKLLNNSIYGLL---GASYGTIKAKNLAAIVTMLGRHFIVEASRIGNMINANMIYSDTDSVFFSISNA------IVKNSANRIISGVNRLNANVVLNDKVYKDMFVLGKKTYIATCNDMIFSRG--INKNGPNLWKTMMDRFYVQ-FIKNRESLNFSGVYDILFDMYMDTYKLLYDNRNAILRLVSIRTRESYKMNTVVTKLIDRISLEKP------DYKFDSKVYCFYRIFGDISNTHLALDIEMDDTP--IEEINLYKFYSNIVSTYYLIFAYAIEQTNQEKLGYVIKYPMQEFNKANKYSFIKALAAIKEMPTRDNDKQPT---------------------------------------------------------------------------------- SpliGV -----MEGFLFN----VDVIPKLKKRSGRQMYPETK------------------------------------------------------------VYRVTRLY------YHRQFIYFFLTGTG--------NVQFYFKTRCPVHSYKICPTNHQYYS-CKNRCLTFKNMIITGLKEFECQRVNIVKVERTGAKID---FAVDEFC-NDINRFHMQKGIYEGDYIKFTKNVTVDENGL--------AEGLCFSDIEVVPVDNLT----------------ESIDPIIAAYDIETYT--NGFQFSNAE--NDHIITIAVTIKYQDETIR-ICLINS------------DDK-ARFDDN-FAHTEYIDGECYVLPFANEKDMIACFFDIIY-HSNPDEVIDYNGDNFDIPYILTRMEILK------------------------MSMDCIKRYDLPDIEFKKTRVQTKLGYSFNSHSMVYYNH--TDLYQYIKNSRDA--TKMENMKLDTVSNYYL--NVGKVELSVKEMIALYK----RNQFAKIVKYNIRDTILPIEVFIKCQVANKL-------------YADTAIMSLSRDDYLKRVSHRINVALFDRAIKNTN------NDERDAYFFNKFDLNKMAFKKK---------EYEEEQEESNEDEGDKIDFTTLVRKR---------VPVHVIPET---------------AVKLCPVKSVIKFTGGKVLS----------------------PNPGYYNLTFTLDFSQLYTSIMIAETICLSNLFIGTDGYLYLQ-KNNNAITTKFLLEMSNKRA-----------------EWKADMKKHEAGSFMYNLYDSWQDAAKLVCNSIYGWLGMFCKPLANYVTFIGRTRLEEARK--------------------------------------------------MIEDLSDNEEIMKKWNLSEL----KLKVIYGDTDSNFVNISLKEDELETLGKD----R-LRQMIMQDILKPVNDSWGGHYKMELENIMTCMLIKG---KKSYICLKENNTVYKRGFNVKKDIPLFLRNIFDHTIGLILRNHSLDCVLKYLV------DALKKKKDDFSVA---------SKDEYSFSQTLNINVT-------------------STIAYKLYMELKES-PDTKLLHDSGDRIPYLLLDVKRKNVKDKAWPTQLYT--EEHNMSWCKHLGIVCTFINDIMAMINN----DDLFVYAFEEICTYLQSNQINDVVYPFLKALTDSK--KKDLLTREMNLKNKKLIGQTQFESIVNKKSHKFIHEYEFSMSKTAPSYRVNVNGFSEDCPVCNGKGVAAVNKQMKVNLLQNNISGN-------------------------------KRKNNTLIGGPASKKMFEPVDKRNKGFTFIMI----- ; END; [ The following blocks are output data for analysis step 13977 ] BEGIN TREES; TITLE Nudiviruses_DNA_polymerase; LINK TAXA = TaxaForAnalysisStep13977; TREE DNA_polymerase = [&R] (((((((AcMNPV:0.02005479,BmNPV:0.0172166)1.0000:0.39451434,LyxyMNPV:0.3988131)1.0000:0.16191559,(CpGV:0.30908821,(AgseGV:0.24980907,SpliGV:0.29894361)0.6600:0.02772713)1.0000:0.23364907)1.0000:0.12836398,(NeseNPV:0.24740886,(NeleNPV:0.07219979,NeabNPV:0.08468387)1.0000:0.13533395)1.0000:0.45908751)1.0000:0.15968184,CuniNPV:0.88574672)0.8630:0.06343747,(MdSGHV:0.76743706,GpSGHV:0.7036059)1.0000:0.33069515)1.0000:0.19376895,((OrNV:0.90751062,GbNV:0.82802371)1.0000:0.25392195,(PmNV:0.85117857,('HzNV_2':0.00471136,'HzNV_1':-2.9244E-4)1.0000:0.74003446)1.0000:0.22027427)1.0000:0.13046858); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr75655] END;