#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 06, 2026; 11:58 GMT TreeBASE (cc) 1994-2008 Study reference: Serdani M., Kang J., Andersen B., & Crous P.W. 2002. Characterisation of Alternaria species associated with core rot of apples in South Africa. Mycological Research, 106(5): 561-569. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S848] [ The following blocks are input data for analysis step 1401 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1401; DIMENSIONS NTAX=37; TAXLABELS 'Alternaria alternata STE-U 4273 CR32' 'Alternaria arborescens STE-U 4242 CR1' 'Alternaria arborescens STE-U 4244 CR3' 'Alternaria arborescens STE-U 4245 CR4' 'Alternaria arborescens STE-U 4246 CR5' 'Alternaria arborescens STE-U 4247 CR6' 'Alternaria arborescens STE-U 4249 CR8' 'Alternaria arborescens STE-U 4251 CR10' 'Alternaria arborescens STE-U 4252 CR11' 'Alternaria arborescens STE-U 4255 CR14' 'Alternaria arborescens STE-U 4259 CR18' 'Alternaria arborescens STE-U 4264 CR23' Alternaria_brassicae_U05253 Alternaria_brassicicola_U05198 'Alternaria infectoria STE-U 4250 CR9' 'Alternaria infectoria STE-U 4253 CR12' 'Alternaria infectoria STE-U 4256 CR15' 'Alternaria infectoria STE-U 4269 CR28' 'Alternaria infectoria STE-U 4270 CR29' 'Alternaria infectoria STE-U 4271 CR30' 'Alternaria infectoria STE-U 4272 CR31' Alternaria_raphani_U05200 'Alternaria tenuissima STE-U 4248 CR7' 'Alternaria tenuissima STE-U 4254 CR13' 'Alternaria tenuissima STE-U 4257 CR16' 'Alternaria tenuissima STE-U 4258 CR17' 'Alternaria tenuissima STE-U 4260 CR19' 'Alternaria tenuissima STE-U 4261 CR20' 'Alternaria tenuissima STE-U 4262 CR21' 'Alternaria tenuissima STE-U 4263 CR22' 'Alternaria tenuissima STE-U 4265 CR24' 'Alternaria tenuissima STE-U 4266 CR25' 'Alternaria tenuissima STE-U 4267 CR26' 'Alternaria tenuissima STE-U 4268 CR27' Ophioshaerella_herpotricha_U04861 Ophioshaerella_korrae_U04862 Pleospora_herbarum_AF229479 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M94] TITLE 'ITS1, 5.8S and ITS2 rDNA'; LINK TAXA = TaxaForAnalysisStep1401; DIMENSIONS NCHAR=604; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'Alternaria alternata STE-U 4273 CR32' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria arborescens STE-U 4242 CR1' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-AC-TCTCG--GGG--------T--ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCCCATTAAG-CC---TTTTTT--CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria arborescens STE-U 4244 CR3' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria arborescens STE-U 4245 CR4' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTT--CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria arborescens STE-U 4246 CR5' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTT--CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria arborescens STE-U 4247 CR6' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGGGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGCCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTT--CAACTTTTGACCTCGGATCAGGTAGGCATACCCGCTGAACTTA 'Alternaria arborescens STE-U 4249 CR8' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-AC-TCTCG--GGG--------T--ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTT--CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria arborescens STE-U 4251 CR10' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAAT-ATTCACCCTTGTCTTTTGGGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria arborescens STE-U 4252 CR11' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria arborescens STE-U 4255 CR14' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria arborescens STE-U 4259 CR18' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGCATACCCGCTGAACTTA 'Alternaria arborescens STE-U 4264 CR23' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA Alternaria_brassicae_U05253 TCCGTACCTGAACCTGCGGAGGGATCATTACACAA-TATGAAGGCAGGCTGAA-ATCTCTCGAGACGAC---------------------------------GGCCTTG-CTGAATTATTCACCCGTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGCT-CGCCCACCACA-AGGACAAACCTATAAACCTTTT-GTAATTGAAATCAGCGTCAGTAA-CAAAATAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAG-TTTGCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCGCTCTC--TT--CCAGCAAAGGTC-AGTATCC-ACAAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA Alternaria_brassicicola_U05198 ????????????ACACCGGAGGGATCATTACACAA-TATGAAAGCGGGCTGGACTCACCTC-AGCAGCATCT-GCT--------------GTT-GGGG--CCAGCCTTG-CTGAATTATTCACCCGTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGCT-CGCCCACCACA-AGGACAAACC-ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAACATAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCCAG-TTTGCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCGCTCTC--TT--CCAGCCAAGGTC-AGCATCC-ATAAAG-CC---TTTTTT--CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAA???? 'Alternaria infectoria STE-U 4250 CR9' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAA-TAACAAGGCGGGCTGGACACCCCCCGCTGGGCA--CTGCTTCACGGCGTGCGCGGC--GGGG--CCGGCCCTG-CTGAATTATTCACCCGTGTCTTTTGCGTACTTCTTGTTTCCTGGGTGGGCT-CGCCCGCC-CTCAGGACCAACC-ACAAACCTTTT-GCAATAGCAATCAGCGTCAGTAA-CAACGTAATTAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTGTCTCCAG-TTCGCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCGCTCTT--TG--CCAACCAAGGTC-AGCGTCC-AACAAG-CC---TTTTTTTTCAACCTTTGACCTCGGATCAGGTAAGGATACCCGCTGAACTTA 'Alternaria infectoria STE-U 4253 CR12' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAA-TAACAAGGCGGGCTGGACACCCCCCGCTGGGCA--CTGCTTCACGGCGTGCGCGGC--GGGG--CCGGCCCTG-CTGAATTATTCACCCGTGTCTTTTGCGTACTTCTTGTTTCCTGGGTGGGCT-CGCCCGCC-CTCAGGACCAACC-ACAAACCTTTT-GCAATAGCAATCAGCGTCAGTAA-CAACGTAATTAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTGTCTCCAG-TTCGCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCGCTCTT--TG--CCAACCAAGGTC-AGCGTCC-AACAAG-CC---TTTTTTT-CAACCTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria infectoria STE-U 4256 CR15' ???????????????????AGGGATCATTACACAA-TAACAAGGCGGGCTGGACACCCCCCGCTGGGCA--CTGCTTCACGGCGTGCGCGGC--GGGG--CCGGCCCTG-CTGAATTATTCACCCGTGTCTTTTGCGTACTTCTTGTTTCCTGGGTGGGCT-CGCCCGCC-CTCAGGACCAACC-ACAAACCTTTT-GCAATAGCAATCAGCGTCAGTAA-CAACGTAATTAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTGTCTCCAG-TTCGCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCGCTCTT--TG--CCAGCCAAGGTC-AGCGTCC-AGCAAG-CC---TTTTTTT-CAACCTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria infectoria STE-U 4269 CR28' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAA-TAACAAGGCGGGCTGGACACCCCCCGCTGGGCA--CTGCTTCACGGCGTGCGCGGC--GGGG--CCGGCCCTG-CTGAATTATTCACCCGTGTCTTTTGCGTACTTCTTGTTTCCTGGGTGGGCT-CGCCCGCC-CTCAGGACCAACC-ACAAACCTTTT-GCAATAGCAATCAGCGTCAGTAA-CAACGTAATTAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTGTCTCCAG-TTCGCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCGCTCTT--TG--CCAACCAAGGTC-AGCGTCC-AGCAAG-CC---TTTTTTT-CAACCTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria infectoria STE-U 4270 CR29' ???????????????????AGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA---------------------CGCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria infectoria STE-U 4271 CR30' ???????????????????AGGGATCATTACACAA-TAACAAGGCGGGCTGGACACCCCCCGCTGGGCA--CTGCTTCACGGCGTGCGCGGC--GGGG--CCGGCCCTG-CTGAATTATTCACCCGTGTCTTTTGCGTACTTCTTGTTTCCTGGGTGGGCT-CGCCCGCC-CTCAGGACCAACC-ACAAACCTTTT-GCAATAGCAATCAGCGTCAGTAA-CAACGTAATTAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTGTCTCCAGCTTCGCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCGCTCTT--TG--CCAGCCAAGGTC-AGCGTCC-AGCAAG-CC---TTTTTTT-CAACCTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria infectoria STE-U 4272 CR31' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAA-TAACAAGGCGGGCTGGACACCCCCCGCTGGGCA--CTGCTTCACGGCGTGCGCGGC--GGGG--CCGGCCCTG-CTGAATTATTCACCCGTGTCTTTTGCGTACTTCTTGTTTCCTGGGTGGGCT-CGCCCGCC-CTCAGGACCAACC-ACAAACCTTTT-GCAATAGCAATCAGCGTCAGTAA-CAACGTAATTAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTGTCTCCAG-TTCGCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAACACAAGTCGCGCTCTT--CG--CCAACCAAGGTC-AGCGTCC-AACAAG-CC---TTTTTTTTCAACCTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA Alternaria_raphani_U05200 ???????????ACCTGCGGAGGGATCATTACACAA-TATGAAAGCGGGCTGGACTCCCCCT-AGCAGTGCATTGCTTTACGGCGTGCGCTGTTAGCGG--CCAGCCTTG-CTGAATTATTCACCCGTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACA-AGGACAAACCATTAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAACATAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCCAG-TTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCGCTCTC--TT--CCAGCAAAGGTC-AGCATCC-ACAAAG-CC---TTTTTT--CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAA--TA 'Alternaria tenuissima STE-U 4248 CR7' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTT--CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria tenuissima STE-U 4254 CR13' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGCATACCCGCTGAACTTA 'Alternaria tenuissima STE-U 4257 CR16' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria tenuissima STE-U 4258 CR17' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria tenuissima STE-U 4260 CR19' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGCATACCCGCTGAACTTA 'Alternaria tenuissima STE-U 4261 CR20' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGCATACCCGCTGAACTTA 'Alternaria tenuissima STE-U 4262 CR21' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria tenuissima STE-U 4263 CR22' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTGGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGCGATACCCGCTGAACTTA 'Alternaria tenuissima STE-U 4265 CR24' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTT--CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria tenuissima STE-U 4266 CR25' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTT--CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria tenuissima STE-U 4267 CR26' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA 'Alternaria tenuissima STE-U 4268 CR27' TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCTGGA-ACCTCTCG--GGG--------TT-ACA----------------------GCCTTG-CTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGG-TTCGCCCACCACT-AGGACAAAC--ATAAACCTTTT-GTAATTGCAATCAGCGTCAGTAA-CAAATTAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT--GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTC--TA--TCAGCAAAGGTCTAGCATCC-ATTAAG-CC---TTTTTT--CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA Ophioshaerella_herpotricha_U04861 ???????????????????AGG-ATCATTACACGATAGTACAGGCCCCAAGTGTAGAACAAA---------CTACGC------------------AGAC---GG----G-TTATGTCTATTACCCTTGTTTATTGAGTAC-CTATGTTTCCTTGGTGGGCT-TGCCCGCCAAA-AGGACACCCTATTAAACCTTTT--TATTTTCAATCAGCGTCTGAAT-AAAAATAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTCTGCTTGGTGTTGGGTGT-TT--GTCTACTCCACTGCGTTTGGACTCGCCTTAAAGTAATTGGCAGCCTATAT-TTGGTTTT-GAGCGCAGCACATTTTGCG-TCTTACTG--CCAGTTATA-TA-GGCACCC-AATAAG-CC---TTTTTAT-CA-CGTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA Ophioshaerella_korrae_U04862 ???????????????????AGG-ATCATTACACGATAGTACAGGCCCCAAGTGCAGCACAAA---------CTGCAT------------------GGGC---GG----G-TTATGTCTATTACCCTTGTTTATTGAGTAC-CTATGTTTCCGTGGTGGGCT-TGCCTGCCAAA-AGGACACCCCATTGAACCTATT--TATTTTTAATCAGCGTCTGAAT-AACAATAAT-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTATGCTTGGTGTTGGGTGT-TT--GTCCACTCCACTGCGTCTGGACTCGCCTTAAAGCAATTGGCAGCCTATAT-CTGGTTTT-AAGCGCAGCACATTTTGCG-TCTTACTG--CTAGTTATG-TG-GGCACCC-ATTAAG-CC---TCTTTAT-CA-CGTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA Pleospora_herbarum_AF229479 ???????????????????AGGGATCATTACACAA-TATGAAAGCGGGTTGGG-ACCTCACCTCGGTGA--------------------------GGGCTCCAGC-TTGTCTGAATTATTCACCCATGTCTTTTGCGCACTTCTTGTTTCCTGGGCGGG-TTCGCCCGCCAC-CAGGACCAAACCATAAACCTTTTTGTAATTGCAATCAGCGTCAGTAAACAATGTAATTA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTT-GTCTCTCACG--------AGACTCGCCTTAAAATGATTGGCAGCCGACCTACTGGTTTCGGAGCGCAGCACAATTCTTGCACTT--TGAATCAGCCTTGGTTGAGCATCC-ATCAAGACCACATTTTTTT-CAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'ITS1, 5.8S and ITS2 rDNA') = N: 1-604; CODONPOSSET CodonPositions (CHARACTERS = 'ITS1, 5.8S and ITS2 rDNA') = N: 1-604; END; [ The following blocks are output data for analysis step 1401 ] BEGIN TREES; TITLE Tb6177; LINK TAXA = TaxaForAnalysisStep1401; TREE Fig._2 = [&R] ((((('Alternaria arborescens STE-U 4255 CR14','Alternaria arborescens STE-U 4251 CR10','Alternaria tenuissima STE-U 4263 CR22','Alternaria arborescens STE-U 4252 CR11','Alternaria tenuissima STE-U 4258 CR17','Alternaria tenuissima STE-U 4257 CR16','Alternaria arborescens STE-U 4244 CR3','Alternaria tenuissima STE-U 4267 CR26','Alternaria alternata STE-U 4273 CR32','Alternaria arborescens STE-U 4264 CR23','Alternaria tenuissima STE-U 4262 CR21',(('Alternaria tenuissima STE-U 4248 CR7','Alternaria tenuissima STE-U 4265 CR24','Alternaria tenuissima STE-U 4266 CR25','Alternaria tenuissima STE-U 4268 CR27','Alternaria arborescens STE-U 4246 CR5','Alternaria arborescens STE-U 4245 CR4',('Alternaria arborescens STE-U 4249 CR8','Alternaria arborescens STE-U 4242 CR1')Alternaria_arborescens),('Alternaria arborescens STE-U 4247 CR6',('Alternaria tenuissima STE-U 4261 CR20','Alternaria tenuissima STE-U 4260 CR19','Alternaria arborescens STE-U 4259 CR18','Alternaria tenuissima STE-U 4254 CR13')))),'Alternaria infectoria STE-U 4270 CR29'),(Alternaria_brassicae_U05253,(Alternaria_brassicicola_U05198,(Alternaria_raphani_U05200,(('Alternaria infectoria STE-U 4269 CR28',('Alternaria infectoria STE-U 4253 CR12',('Alternaria infectoria STE-U 4250 CR9','Alternaria infectoria STE-U 4272 CR31'))),'Alternaria infectoria STE-U 4256 CR15','Alternaria infectoria STE-U 4271 CR30')Alternaria_infectoria))))Alternaria,(Ophioshaerella_herpotricha_U04861,Ophioshaerella_korrae_U04862)Ophiosphaerella),Pleospora_herbarum_AF229479); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5675] END;