#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 11, 2024; 16:40 GMT

TreeBASE (cc) 1994-2008

Study reference:
Takahashi T., Sato M., Toyooka K., Matsuzaki R., Kawafune K., Kawamura M., Okuda
K., & Nozaki H. 2014. Five Cyanophora (Cyanophorales, Glaucophyta) species delineated
based on morphological and molecular data. Journal of Phycology, 50(6): 1058-1069.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S16131]

[ The following blocks are input data for analysis step 14176 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep14176;
        DIMENSIONS NTAX=6;
        TAXLABELS
            Cyanophora_biloba_UTEX_2766
            Cyanophora_cuspidata_101
            Cyanophora_cuspidata_SAG_45.84
            'Cyanophora kugrensii NIES-763'
            'Cyanophora paradoxa CCAP 981/1'
            'Cyanophora sudae NIES-764'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23302]

	TITLE Cyanophora_ITS;
	LINK TAXA = TaxaForAnalysisStep14176;
	DIMENSIONS NCHAR=614;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610    ]
[                                           .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .    ]
Cyanophora_biloba_UTEX_2766        ACACTGTATCCAATATACCTTGTGAACTGTTCTGTTCGGGTGCCTGGTTGTCGGCGCTCGCATACCTTTACGGTGTGCTTGCGTCCACAGCCTGGTGCCGTATCACTTTACACCCATTTCATACCTTTGACTGAATCTCTGCTAGTGACGCAAGTCCTGGCAAATCT-AATAAAAAACAACTTTTAACAACGGATATCTTGGTTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCAAATCTTTGAACGCATATTGCGCTTCTGGGCTCGCTCAGAAGCATGTCTGTTTCAGTGTCATTATCATCATCCTCACCATACCTTTATGGTCCCTGGTGGACTTGAGTTTCATAGCATTTTCGGATGCTATGTTACTTGAAATATAGAGGTTACTGGGACGGTGGCTGTCCTAAGTGGTGTATTAATCTGCTTCGGCAGAAAATCACCATTTTAGTATGCTGCCCTCGTTGTGCTCAGTTTCCACCTGCTT-GCATTTTTAATTTTGACCTGAAATCAGGCAAGGCCACCCGCTGAACTTAAGCATATTAATAAGCGGAGGAAAAGAAACTAACAAGGATTCC
Cyanophora_cuspidata_101           ACACTGTATCCAATATACCTTGTGAACTGTTCTGTTTGGGTGCCAGGTTGTCGGCGCTCGCATACCTTTATGGTGTGCTTGTTTCCGCT-CCTGGTGCCGTATCACTTTCAACCCATTTCATACCTTTGACTGAATCTATGCTAGTGACGCAAGTCCTGGCAA-TCTTAATAAAAAACAACTTTTAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCAAATCTTTGAACGCATATTGCGCTTCTGGGCTCGCTCAGAAGCATGTCTGTTTCAGTGTCATTATTATCATCCTCATCATACCTTTATGGTC--TGATGGACTTGAGCTTCATAGAATCTTCGGAAGCTATGTTGCTTGAAATTCAGAGGTTACTGGGACGGTAGCTGTCCTAAGTGGTGTATTAATCTGCTTCGGCAGAAAATCACC-TCTTAGTAAGCTGCCCTCGTTGTGCTCAGTTTCCACCTGCTTAGCATCTTTAATTTTGACCTGAAATCAGGCAAGGCCACCCGCTGAACTTAAGCATATTAATAAGCGGAGGAAAAGAAACTAACAAGGATTCC
Cyanophora_cuspidata_SAG_45.84     ACACTGTATCCAATATACCTTGTGAACTGTTCTGTTTGGGTGCCAGGTTGTCGGCGCTCGCATACCTTTATGGTGTGCTTGTTTCCGCT-CCTGGTGCCGTATCACTTTCAACCCATTTCATACCTTTGACTGAATCTATGCTAGTGACGCAAGTCCTGGCAA-TCTTAATAAAAAACAACTTTTAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCAAATCTTTGAACGCATATTGCGCTTCTGGGCTCGCTCAGAAGCATGCCTGTTTCAGTGTCATTATTATCATCCTCATCATACCTTTATGGTC--TGATGGACTTGAGCTTCATAGAATCTTCGGAAGCTATGTTGCTTGAAATTCAGAGGTTACTGGGACGGTAGCTGTCCTAAGTGGTGTATTAATCTGCTTCGGCAGAAAATCACC-TCTTAGTAAGCTGCCCTCGTTGTGCTCAGTTTCCACCTGCTTAGCATCTTTAATTTTGACCTGAAATCAGACAAGGCCACCCGCTGAACTTAAGCATATTAATAAGCGGAGGAAAAGAAACTAACAAGGATTCC
'Cyanophora kugrensii NIES-763'    ACACTGTATCCAATATACCTTGTGAACTGTTCTGTTTGGGTGCCAGGTTGTCGGCGCTCGCATACCTTTATGGTATGCTTGTTTCCGCT-CCTGGTGCCGTATCACTTTAAACCCATTTCATACCTTTGACTGAATCTATGCTAGTGACGCAAGTCCTGGCAA-TCTTAATAAAAAACAACTTTTAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCAAATCTTTGAACGCATATTGCGCTTCTGGGCTCGCTCAGAAGCATGTCTGTTTCAGTGTCATTATTATCATCCTCACCATACCTTTATGGTCCCTGGTGGACTTGAGCTTCATAGAATCTTCGGAAGCTATGTTGCTTGAAATATAGAGGTTACTGGGACGGTAGCTGTCCTAAGTGGTGTATTAATCTGCTTCGGCAGAAAATCACC-TCTTAGTAAGCTGCCCTCGTTGTGCTCAGTTTCCACCTGCTT-GCATTTTTAATTTTGACCTGAAATCAGGCAAGGCCACCCGCTGAACTTAAGCATATTAATAAGCGGAGGAAAAGAAACTAACAAGGATTCC
'Cyanophora paradoxa CCAP 981/1'   ACACTGTATCCAATATACCTTGTGAACTGTTCTGTTCGGGTGCCAGGTTGTCGGCGCTCGCATACCTTC-TGGTATGCTTGTTTCCGATGCCTGGTGCCGTATCACTTTAAACCCATTTCATACCTTTGACTGAATCTATGCTAGTGACGCAAGTCCTGGCAA-TCTTAATAAAAAACAACTTTTAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCAAATCTTTGAACGCATATTGCGCTTCTGGGCTCGCTCAGAAGCATGTCTGTTTCAGTGTCATTATCATCATCCTCACCATACCTTTATGGTCCCTGGTGGACTTGAGCGTCATAGGGTCTTCGGAACCTATGTTGCTTGAAATTCAGAGGTTACTGGGACGGTAGCTGTCCTAAGTGGTGTATTAATCTGCCTCGGCAGAAAATCACC-TCTTAGTAAGCTGCCCTCGTTGTGCTCAGTTTCCACCTGCTT-GCATTTTTAATTTTGACCTGAAATCAGGCAAGGCCACCCGCTGAACTTAAGCATATTAATAAGCGGAGGAAAAGAAACTAACAAGGATTCC
'Cyanophora sudae NIES-764'        ACACTGTATCCAATATACCTTGTGAACCGTTCTGTTCGGGTGCCAG-TTGTCGGCGCTCGCATACCTTTATGGTATGCTTGTTTCCGACGACTGGTGCCGTATCACTTCACACCCATTTCATACCTTTGACTGAATCTCTGCTAGTGACGCAAGTCCTGGCAAATCT-AATTAAAAACAACTTTTAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCAAATCTTTGAACGCATATTGCGCTTCTGGGCTCGCTCAGAAGCATGTCTGTTTCAGTGTCATTATCATCATCCTCACCATACCTTTATGGTCCCTGGTGGACTTGAGCTTCATAGCGTCTTCGGATGCTATGTTGCTTGAAATATAGAGGTTACTGGGACGGTAGCTGTCCTAAGTGGTGTATTAATCTGCTTCGGCAGAAAATCACCATCTTAGTAAGCTGCCCTCGTTGTGCTCAGTTTCCACCTGCTT-GCATTTTTAATTTTGACCTGAAATCAGGCAAGGCCACCCGCTGAACTTAAGCATATTAATAAGCGGAGGAAAAGAAACTAACAAGGATTCC
;
END;

[ The following blocks are output data for analysis step 14176 ]
BEGIN TREES;
      TITLE Cyanophora_Fig.6;
      LINK TAXA = TaxaForAnalysisStep14176;
      TREE Fig._6 = [&R] ((((Cyanophora_cuspidata_101:0.0,Cyanophora_cuspidata_SAG_45.84:0.00332992)0.9980:0.01182509,'Cyanophora kugrensii NIES-763':0.0)0.5520:0.00590818,'Cyanophora paradoxa CCAP 981/1':0.01290008)0.8460:0.00617415,('Cyanophora sudae NIES-764':0.00910018,Cyanophora_biloba_UTEX_2766:0.02591717)0.8460:0.00132017);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr76532]


END;