#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 10:53 GMT TreeBASE (cc) 1994-2008 Study reference: Igea J., Aymerich P., Bannikova A.A., Gosálbez J., & Castresana J. 2015. Multilocus species trees and species delimitation in a temporal context: application to the water shrews of the genus Neomys. BMC Evolutionary Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16177] [ The following blocks are input data for analysis step 14251 ] BEGIN TAXA; TITLE TaxaForAnalysisStep14251; DIMENSIONS NTAX=14; TAXLABELS Ailuropoda_melanoleuca Bos_taurus Canis_familiaris Crocidura_russula Equus_caballus Erinaceus_europaeus Felis_catus Homo_sapiens Macaca_mulatta Myotis_lucifugus Neomys_fodiens Pteropus_vampyrus Sorex_coronatus Tursiops_truncatus ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23444] TITLE Neomys_ASB6_intron_2; LINK TAXA = TaxaForAnalysisStep14251; DIMENSIONS NCHAR=1026; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ailuropoda_melanoleuca GTCAGCTGGAGCCCAGAGCGGGAGTGGATGGGCGGCTTAAGTGTGGCT----------------------------CTGCCTTTCCTGTTCTCTTGGGAGCCGCTTCCCTTGTTCTGCCGTGGGTGGCGACCGAGGAACCCC-----------CCCCTGTGGGCTTCCAGGTGGCTCTGAGCCCCTCTGGTCCAAGAGCGAGTCTGTTGCTGCTTCTGCCGTGTGACTGA-TCAGCAAACTTT-------CCCAGCCAAATCCCCGCTTCCATTAACGTGAAAATGCGGGTGCTGGCGCTGTGCCCAGAGCCCAGGGGGGGCACTCTTCTGTCACTTATTCTGAGCCATCTCGCGTTTTTGCTCATGCCACAGGGAGGGGGGGAAACACTGAAGCGACGCTGGGTGTAAGTCACGGCAGGGCCCAGTTAGCTTCTAGCCTGGAAGAGCCAGGGACGGAGATGGACCCAGTTTCCTTTCCTCTCTGGCTTTCTCCCGGGGACAACAGGGTCAGCCAGGAGACAGGCAGGGCTGGCTTGTGACCGG-TGCGGGTCTTTGAGCCGACACAGGCTGTGGC-----------------------------CAGGCTCAGAGGGCGCTCGGCTCCCGGCGG---------------------GGCTGTTAGGAAGTCAGTCACCTGGGGA----CTTGGACAACATGGCCGTTA--------?????????CCCCCCCCCCCCAGCAGCCTGAGAAGAGGTGCCCTCTTCCGGCTCCGTTTTACAGGA---GAAACTAAACGCTGCCCTCTAGCCTGCCCCCC-----------GCCCCCGGACCTGCCCGAGGCCCCACTCCAGCGCCTGCGCTCTGGCCTCTGATGGGGACAGCTGT--CCTGACCCCTCATGCTGCCAGAAGCCTGGGTCCCTCGGGTGGGAGGGCCGGGGCTGAGCTGCAGGCCGGTGCGG--CCGGGCAGGACTGAC??????????GACTGACAGGGGCCGTGTCTGTGCCTTTAG Bos_taurus GTCCTCCGGAGCCTGGAGGGGGGGTGGACAGATGGCTTAGGTGTGGCCTGGGCGGGGGTGGTCAAGCCTCCAGGCTCTGC---------------------------CCTCTCTGTCTCAGGGGTGATGCCCGAGGAAGCCCGGTGGCCTCCC-GCCTGCAGGTTTCCCAGAGGCCCTTACCGCCTCTGCTC--GGAGCAGGTTTGTCACTGCTCCTGTCAGGCGATTGACTTAGCAAACTTTTCCAGCTCCCAGTTAAGTCCTTGCTTCCATTAATGCGAAAATGGGGCTGCTGGCGCTGTGCCCAGAGCTAAGGGAAAGTAATTTTCTGCCGCTGGTTCTGAGCCAC---------------------GGGGAGAGGGGGGAAACAGATAAG--ACACTGGGCATAAATCACAGACTGACGGTGTTGGCGTCCGGCTGGTGTGCCCGGGAGGTGCTGAGGGAGCCATCTTCCTTCCCTCTTTGTTTTGCCCGGGCGGGAGACAAGGTCAGCCGGGAGACACTCGGGACTGACTTGTTCCCAAATGGGGGTTTTTGTGCTGATACAGGACGT-GCCAGGCGTATCTTTCCTCCCTTTTGGAGGACAGGCTCAGAGGCTGCTGGGCTCCTGGGAGGTCAAGGAGCTGG-----GGGAGGCATTCTGTAGTCAGTCACTTGGGAGACCGCTTTGAGCATTTG---------------------------------CCCCACAGTT---------------GTTTTAGGTCCTATTTTACAAAA---GGGACTAAACCCAGATTAAGTACTTGTC-CGTCATTGGAATGCCCCCAGTACCCGAACTTAGGCCTGACTCCGA-----GCACCCTAGCATCCGACGAGGACAGCTGTGTCCTGACCTCTTATGGTGCCAGGAGC-------CCTTGGGTTGGAGTGTTGGGGCTGGGCTGCCAGGCGGTCCTGGGCCTGTGAGAATGTGCTGATGGGCAGGACTGATGTGAGCTGTGTCTGCGCCTTCAG Canis_familiaris GTCAGCTGGAGCCCAGAGGGGGGGTGGATAGGTGGCTTAAGTGGGGCTCTGCCTTGGGTGGCCAAGCCTTCAGGCACTGCTTCTCCTGTTCTCCTGGGAGCCACTTTCCTTTTTCTTCCATGGGTGGTGACTAAGGAACCCC-----------CCCCTGTGGGCTTTCAGATGGTTCTTACCACCTCTGCTTCAAGGGCGAGTTGGTTGCTGCTTCCACCATGTGATTGA-TCAGCACACTTG-------CCCAGCTAAATCCTGGGTTCCATTAACATGAAAATGTGGTTGCTGGCACTGTGCCCAGAGCTCAGGGAGAGCAATTTTCTGCCACTTATTCAGAGCCATCTCGCATTTTTGTTCATGCCACAGGAGA-GGGAAAAACACGGAAGTGACACTGGGTGTAAATCAAGACAGGGCTGGGTTAGCTTCTAGCCCAGAGGGCCAGGGGATGGGGATGGAGCCAGTTTACTTCTC----TGGCCTTCTTCCAGGGTGGGCAGGGTCAGCCAGGAGACATACAGGGCTGACTTGCGACTGAGT--TGGTCTTTGAGCCGACACAGCACATGGCCAGGCACGCCTCCCCTCCCCGTCTGAGGACAGGCTCAGAGGGTGCTAGGCTCCTGGAGGGCTGAGGAGCTGAGGCACGGGGCCTGTTAGGAAGTCAGTCATTTGGAGA-CTGCTTCGAGGATGTGGCGGTTACTACCAGGCTTCAGAAGCTGTCACTCCCTAGCAGCCTGAGAAGAGGCCCCC--TTACAGTTCCATTTTACAGAA---GAGACTAAACCCAGACAGGTGAGGTGCTGCGCCACTAGGATGCCCCCAGGATCCTGACCTAGGTCTGACTCCAGAGCCTGTGCGCTGGCACCTGATGAGGATGGCTCTGTCCTGACCCCTCATGGTGACAGAAGCCTGGGTCCCTCAGGAAAGAGGGCTGGGGCCGA-----------------------------------------TAGGACTTAGACGAGCTGTGTCTGTGCCTGCAG Crocidura_russula ---GTCTGCAA---------GGGGTGCAGCGGGGAGT--------------------------------------------------------------------------C---------AGGGG----------------------------------------------------------------------------------------------------------------------CTGGCTC{CT}CA------------------------------------------CAACACACCCCTAGCTCTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCACGGGTACAGGTCCTGCTGTGCGTCCCTTGG-----------------------------------------GGGAAAGTCAGCTGCTACCCAC{CT}CTCTGGAGGGCAGACATGCTCCAAGGCAGCTAGGTTCTTGCA----GGGGGGCTTCAGGCACGGGGGTTCTTCCT------GCTACCAGGAGGGTAGTCATATGCAGAACCCCAAGACTCCCTGACTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTGGCCCCCAG---------------------------------------------------------------------------------------------------------------------- Equus_caballus GTCAGCTGGAACCCGAGGGGTGGGTGGGTGGG-GGCCCAAGTGTGG---------------CCAGGCCTCTGGGCTCTGCTTTCACTGTTCTCCTAGGAGCTAGCGTCCTCCTTCTTCCGTGGGTGATGACGAAGGAAACAGGGTGGCCTGCCCTCCTGGGGACTTGCAGATGGCCGCAGCCACCTCTGCTCCGAGAGCCAGTTTGTTGCTGCTTCTCTCTTGTGATGGATTTAGCAAACCTTCCCAGCCCCCAGCCAAGTCCCCGCTTCCATTAATGTGAAAATGTGGCTGCTGGCCCCGTGCCCAGAGCTAAGGGAAAGTAATTTTCTGCCACTTATTCTGAGCCATCTTGCATTTCCGTTCCTGCCATAGGGA--GGGGGAGACAGATAAGCCACGTTGGGTGTAAGTCACTGCAGGA-TGTGTTGGCTTTTAGCTTGTAAGTTCCGTGGGGGCGGGTAGAGCCATTTTCCTTTCTTCTCTGGCTTTTGCCAGGAGAGGGCAG---------GGAGACATGCAGGG--GGACTGTGACCGAAT-GGGGTCTTTGTGCTGACACAGGATGTGACCAGGCCCCTCTCCCCTCCCTATCTGAGGACAGGCTCCGAGACTGCTGGGCTCCCGGAGCATCAGGGAGCGGAGGAGGGGGGGCTGTTCTGAAGTCCGTCACTTGAAGAGCCGCTCTGAGAACTTGGCTGTTACTGCCGGGCTTAAGGAGCCGGCACTCCCAAACAGCCCGAGAGGAGATGCCCTTTCATGGTCCCATTTCCCAGAGGAGGGAAGTAAACCCAAACAGATTGAGTGCCTCGCCACTAAAATGCCCCCAGGGCCTGAACCCAGGTCTGA--CTGGAACCCACGCTCTGGCATCCCCTGAGGACAGCTCTGTCCTGACCCT-CACGGTGACCGGAGCCTGGGCCCTTCAGGTGGGAGTGCTGGGGCTGGGCTGCCAGGCGCTCCCGGGCCTGCGAGAATGTGCCG--------GACTGACGTGAGCTGTGTCCGTGCCTTCAG Erinaceus_europaeus GTCAGCTGGAG------GGGTGGGTTGATGGATGGCCCGAGTGTGGACACGCTGTGGGCAACCAGGCCCAAAGGA----------------TCTGGGCAACTAGTTCCCGCTTTAATTCATGGGTGATGACTCAGGA------------CTACTGTCTGTGGACCTT-AGGTGGCTCTGACCACTTCTGGATCCAGAATGAGTTTGTTGCTGCTTCAGCCATGTGACTGATTGAGCAAAC---CCCAGCTCCCAG-------CTTGCTCCCATTAGCA------------TGCTGGCTTTCTGCCCAGAGCTAA-GGAAGGTAATTTTCTGCCACTTACTCTGAGCCATCTTGTGTTTTTGTTCGTGTT---------------------------GCATCATGCATAAATCATGGTGGGACCAGGCTGGCATCTAGGTTGTGCACACTGTTGACTGGCAATGAGCCATTTTCCT------------------CTCAAGAAGGGCAGGTGAGCC---AGAAGTGCAGGACCGACTTGTGACCCAAC--GAGTCACTGTGCTGTCACAGGGTGCCACCAAGTGCCTCTCCCTCCCCCCCGCTGAGACAGGCT-----GTTTCTGAGTTTTT--------------------------TACTATCTTTTTAATATTTATTTTATTTATTCCTTT-----TGTTGCTCTTGTTGTTTTATTGTTGTAGTCATTATTGTTGGATAGGACAGAGAGAAATGGAG-----------------GCAGAGGGGGAGAGAAAGCACCTGCAGACCTGCTTCACCACTGCAAGTGGGGAGCCAGGGCTCAAACCAGGATCTGACGCTGGTCCTTGCGCTTT-GCACCACCTGTGCTTAACCTGCTTCCAACTCCCAGTGGTGGCTGAGGAGTTGCTACCTGGGACAGGGGTCCGAAGACCAAGCCGTCTGCCGGTCCCCGGCCCTGCAGCACCTGCTGAAAGGCAAAACTGAC----GGCTTGTGTGTACTTCCAG Felis_catus GTCAGCTGGAGCCCGGGGGGGGGGCGGGTAGGTGGCTTGAGTGTGGCTGGGCTTCGGGTGGCCACGTCTTCAGGCGCGGCTGTTCTTGTTCTCTCGGGAGCTGCCTCCCTCTTCCTTTCGCGGGGGACCACTGAGGCGGCCC-----------CCCCTG-----------------CTTCCCACCTCTGGTCCAAGAGCGAGTTTGTTGCTGCTTCCGCCGTGTGACTGATTCAGCAAACTCTCCCGGCTCCCAGCGAGATCCCTGCTTCCGTTATCGTGAAAACGCGGCTGGTGGCCCTGTGCCCAGAGCGCGGGGAGAGCAA-TTTCTGCCGCTCGTTCTGAGCCATCTCACATTTTGGCTCACGCCAGAGGGAG-GGGGCAAACACAGAAGCTACACTGGGTGTAAGTCACGGCAGGACCGGGTTGGCTTCTAGCTTCTAAGTGCCGGCGGTGGGGATGGAATCGTTTTCCTCTC-----TGGCTTGCTCGCCAGGAGGGCGGGGTCAACCAGGAGAGGTTCAGGGCTGACCTGGGACCAGATGGGGGTCTTTGAGCTGACCCAGGCTGTGGCCAGGCGTGCCTCCCCTCCCCATCTGATGACAGGCTTAGAGGGCGCTAGGGTCCTAGGCTCCCGGAGGGCCGGGGGGCGGGGGCTGTTACAAAGTCAGTTACCCGAACA-CTGCTTTGAGGACGTGGCTGTCACTAGTGGGGTTGAGGAGTTGTCAGTCCCCAGCCGCCCGAGAAGGGGCGCCCTCTTAGGGTTCTGTTTTATAGAAGAGGAGAGTAAACCCAGACAGATTAGCTGCCCCCCCACTGGAACGGCGCCAGGACCCTGACCGAGCTCTGACTGCAGAGCTTGCGCTCTAGTGTCTGATGAGGACGGCCGCGTCCTGACCCCTGGTGGTGCCGGGAGCCTGGGCCCCCCAGGGGGGTGTGCTGGGGCTGAGCCCGAGGCCGGTCCTGGGCCCGCAAGGAGGTGGTGATAGGCAGGACTGACATCAGCCGTGTCTGTGCCTTCAG Homo_sapiens GTCAGCGAGAGCCCCG----GGGGTGGGCAGGTGGCTTAAACGCGGCCCGACGCTGGGTGGCCATGTCCCCAGCCTTGGCTTCTACCATCCTCTGAGGAGTGACTTCCCCCTTTATTTCCTGGGTGGCAACTAAGGAAACTCGGTGGCCTCCCCCCCTGCGGGTTTTCACATGGCTCTTCCCACCTCTGTTCCAAGAGCGAG--TGTTGCTGCTTCTACCATGTGATTGA-TTAGCAAACTTTCCCAGCTCCCAGATTAATCCCCACTTCCATTAATGCAAAAATGCGGCTGCTGGCACTGTGCCCAGAGCTAAGGGAAGGTAATTTTCTGCTACTTACTCTGAGCCAATTTGTTTTTTTTCTCATGCCGTAGGGAGAGGGGAAAAC----AGGCTGCATTAGGCATAAATCACCACAGGA-CACCCTGGCTCCTGGCTCCTGAGTGCCAGGGATGGAGATGGAGCCGAGCTCCTTTCTCTGTGTTTTTCAGCCCAGGGAGGGCAGGGTTAGTCGGCAGACAGGCAGGGCTGCCTTGTGACCTAATAGGGGCCT--------------GAGACAGCCAGGCACGTCTCCTTTCCCCATCCGAAGACGGGCTTGGAGTCTGCTGGGCTCCTGGAGGGTCAAGGAGCTGAGACGGGAGGCCGGTTCTGAAGCCAGTGACTTGGAGA-CCGCTTGGAGAACCTGGCTGTTACCACCAGGCCTACAAAGCAGAGCCGCCCAGCCATTCTGAGAGGGTGCGCCCTTTTATGGTCCCTTCTTACAGAAGAGGAAACTAAACCCCAACAGCTTCAGTAGCGTGCCACTAGAACACCCCGAGG-----------------------------GCCCTCTAGTATCTGGTGAGGACAGCTCTGTCCTAACCCTTGATGGTGACAGGAGGCTGGGCCCTTTAGGTGGGAGT-TTGGGGCTGGGCTCT-----GGTCCGGGGCCCATAAGAATGCG--GACAGATAGGACCCACATGAGCTGTGTCTGCACCTTCAG Macaca_mulatta GTCAGCGAGAGCCCCG----GGGGTGGGCAGGCGACTTAAACGTGGCTCTGCGCCGGGTGGCCATGTCCCCAGCCTTGGCTTTTACCATCCTCTGAGGAGTGACTTCCCCCTTTATTTCCTGGGTGGTGACTAAGGAATCTCGGTGGCCTCCCATCCTGCGGGTTTTCACATGGCTCTCCCCACCTCTGTTCCAAGGGCGGGCGTGTTGCTGCTTCTACCATGTGATTGA-TTAGCAAACTTTCCCAGCTCCCAGAGTAATCCCCACTTCCATTAATGTGAAAATGCAGCTACTGGCATTGTGCCCAGAGCTAAGGGAAGGTAATTTTCTGCCACTTACTCTGAGCCAATTTGTTTTTTTCCTCATGCCATAGGGAGAGGGGAAAAC----AGGCCGCATTAGGCATAAATCACCACAGAA-CACGCTGGCTTCCAGCTTCTGAGTGCGAGGGATGGAGATGGAGCCATGCTCCTTTCTCTCTGTTTTTCACCCCAGGGAGGGCAGGGTTAGTAGGGGGACAGGCAGGGCTGCCTTGTGACCTAATGGGGGCCT--------------GAGACAGCCAGGCATGTCTCCTTTCCCCATCCAAAGACAGGCTTGGAGGCTGCTGGGCTCCTGGA-GCCCAAGGAGCTGAGACGGGAGGCCAGTTCTGAAGCCAGTGACTTGGAGA-CCGCTTGGAGAACGTGGCTGTTACCACCAGGCCTACAGAGCGGAGCAGCCCAGCCATTCTGAGAGTGCGCGCCCTTTTATGGTCCCTTCTTACAGAAGAGGAAATTAAACCCCAACAGCTTCAGTAGTGTGCCACTAGAACACCCCGAGG-----------------------------GCCCTCTAGTATCTGGTGAGGACAGCTCTGTCCTAACCCTTGATGGTGACAGGAGGCTGGGCCCTTTAGGTGGGAGT-TTGGGGCTGGGCTCT-----GGTCCAGGGCCCATGAGAATACG--GATAGGCAGGACGCACACGAGCTGCATCTGTGCCTTCAG Myotis_lucifugus GTCAG-GGGAGCCCGCGGGGGGGGCGGGCAGGCGGCTTCAGTGCGGCC--GCTCTGGGTGGCCAGGCCTCTGGGCTCTGCCTGTC---TTCTCTTAGCA------------CTTATTTCATGGGCGATGGCTACGGA-CCCCGGCGGCCTCCC--CCCCACGGGCTTCAGATGGCCCTTAGCACCTCCGGCCCAGGAGC-AGCTTGTTGCT-CTGCTACCCTGTGATTGATTTAGCAAACCTTCCCAGCTCCCA-CTCATTCCCTGCTTCCATCAAGGTG-AAATGCAGCTGCTGGCACTGTGCCCAGAGCTAAGGGAAGGTCATTTCCTGCCACTTATTCTGAGCCATCTTGCATTTTCGTTCATCCCACAGGAAGAGGGGGAA-----------ACACTGGGCCTAAGTCACAGCGGGACTGTGCTGGCTTCTGGCTTGTAGGTGCTGCAGGAGGTGAGGGAGCCGTTTTCCTTTCCTCTCTGGCTTTTCACCCACGAGGGCAGGGTCAGCCAGGAGACGTGTGGGGCCGACTTATGACCAAATGGCGGTCTTTGCTCTGACATAGGACATGGCCAGGCATGGCTCCTCTCCCC-TCTGAGGACCGGCTCAGAGGCTGC-AGGCTCTTGGAGGGTCAAGGAGCCGAGGGGGTAAGGGTGTTCTGAAGTCAGGCGCTTGGAGACCCGCTTTGAGAACGTAGGTGCCGTCGCCAGGCTTGAGGATCTGGGTGTCCCGAGTAACCCGAGAGGAGAGGCCCTTGTATGGTCCCATTTTACAGATGAGGAAACTGAACCCAAACAGATTAAGTACGTGCCCACTACAACAC--CCAGGACCCGAACCTAGGCCTGA--CCAGAGCCTGTGCTGGAGCACCCAGTGAGGACAGCTGTGCTCTGACCCCTCCGGGTGACAGCAGCCCGGGCCGTCGGGGGGGGAGTGCCGGGACTGGGCTGCCAGGCGGTCCTGGG--TGTGAGAACGTGCTGACAGGACTGACGAGC--------TGGCTGTGCCCTCAG Neomys_fodiens GTCGGCTGTGG---------GGGGCGGGGGGCCGGCTT-----------------------------------------------CCTGTCTCTGGGG-------TTCCTGTCTCCCTCCTGGGTGATAACAAAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTGCAGAGCCAGGCTGGCAGAAGGCCGTGTGG-----------------------------------------GGGAAGGTCACCCGCCTGTCCCGAGCCATGCGGCTACTGGGTTCCGAAGGGGCTGTTGCCCCGGGG---CACCAGCTTCAGGAAGGGGGGCAGTGCTG------GGTGCGAGGAAACCCAGTCGGTGAGGGAGGCTGAGCCCAGTAGGTTAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACGCCCCCAGTTGTGGCAGG------------------CGGCGAGCAGGGCCCAG----------GGCACTGAC----------------------------------------------TGCCCGCAG Pteropus_vampyrus GTCAGGGGGAGCCCGGGGGC----------------------------------------------------------------------------------------------------TGGGTGACAAC-AAGGAGACCCGGTGGCCTCCCCCCCCTGCGGGTTTTAGGTGGCCCTTACCACCTCCGGTCCAAGAGCAAGTTTGTTGCCGCTTCTGCCATGTGATGGGTTTAGCAGATATTCCCAGCTCCCAGCCAATTCCCTGCTCCCACTAAGGTGGAAATGCAGCTGCTGGCACTGTGCCCGCGCTCGGGGAGGGTACATTTCTTGCCATTTATTCTGAGCCGTCTTGCATTTCTGTTCATGCCGTAGGGAGGAGGGAAAACAGGTAGGGCACCCTGGGCATAAATCACGGCGGGACCCTGTCGGCCCCTAGCTCGTAAGTGCCGGGGGAGCTGATGGAGCCATTTGCCTCTCCTGTCTGCCCTTCCCCCAGGGCGGGTGGAACCGTCCAGCAGATGTGCAGGGCCGACCTGC--CTTGCTGGGGGTCTTCCTGCCAACACAGGACGTGGCCAGGCACGTCTCCCCTCCCCATGTGAGGACAGGCTCCGAGCCTGCTGAGCTCCTGGAGGGGCAAGGAGCTGAGGCAGGGGGCCCATCCTGGAGTCAGTCACTTGAAGCCCCGTTTTGCGAACGTGGCTGTTGTCGCCAGGCTTAAGGAGCTGTCCCTCCCCGACAGCCCGAGAGGAGATGCCTTTCGATGGTCCCATTTTACAGAAGAGGAAACTAAACCCAAACAGATTAATTACTGTGCCACTAGAACACCCCTGGGCCCCGAACCTGGATCTGACTCTAGAGCCTGCGCTGTAGCACCCGATGAGGACAGCTCCGTTCTGACCCCTGAGGGTGAC---AGTTCAGGCCCCTCAGGTGGGAGTGCCGGG-CTGGGCTGCCGGGCGGTCCTGGGCCTGCAAGAATGTGCCCGTAGTTGGGACTGACATGAGCTATGTCTGTGCCCTCAG Sorex_coronatus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Tursiops_truncatus GTCAGCTGGAGCCCAGAGGGGGGGTGGGTAGGTGGCTTAAGTTTGGCCCTGCTTTGGGTGGCCAAGCCTTCGGGGTCTGCTTTTACTGTTCTCTTGGGAGATACTTCCCTCTTTATGTCACGGGTGATGACTAAGGACACCCGGTGGCCTCCCCCCCTGCGGGCTTTCAAATGGCCCTTAACCACCTCTGATCAAGAGCGAGTTTGTCACTGCTTCTACCATGTGATTGCTTTAGCAAACTTTCCCAGCTCCCAGCTAAATCCCTGCCTCCATTAATGTGAAAATGTGGCTGCTGGCGCTGTGCCCAGAGCTCAGGGAATGTAATTTTCTGACACTCGTTCTGAGCCACCTTGCATTCTTGTTCTTGCCACAGGGAGAGGGGAAAACAGATAAGACTCACTGGGCATAAATGACAGCAGGACGCTGTTGGCTTCTAGCTTGT--GTGCTGGGGGTGGTGATGGAGCCATTATTCCTTCCCTCTTCGCTTTCACGGAGGGCAGGCAGAGTCGGCCAGGAGACATGCAGGGCTGACTTGGGGCCGACTTGGGGGTTTTGTGCTGACACAGGATGTGGCCAGGCGTGTCTCCCCTCCCCATTTGAGGACAGGCTCAGAGGCTTCTAGGCTCCTGGAGGGTCACAGAGCTGAGGTGGGGGAGGCATTGTGAAGTCAGCCACTGGGAGACCCGCTGTGAGAACTTGGCTTTTATTGCAAGACTTACGGAGCTGTCACTCCCCAACAGCCC--------------TGTTTAGGTCCCATTTTACAGAA---GGAACTAAGCCCGGATTAAGTACGATGTCCATAATCAGAACAGCCCCAGGATCCAAACCTAGGCCTGACTCCA----------TGCACTGTCCGACGAAGACAGCTGTGTCCCGACCCCTCGTGGTGCTGGGAGC-------CCTTAGGTCGGAGCACTGCGGCTGGGCTGCCAGGCGGTCCTGGGCCTGCGAGAATGTGCCGACAGGCAGGACTGACGTAAGCTGTGTCTGTGCCCTCAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23453] TITLE Neomys_PRPF31_intron_3; LINK TAXA = TaxaForAnalysisStep14251; DIMENSIONS NCHAR=590; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ailuropoda_melanoleuca -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Bos_taurus GTGAGTAGGGAGGGCAAGCAGAAACAGCCCTGCCTGGTGTCCCCCACAGCCTCGGGCGGGCAGGATCCGCCACCGTCCCTGCTGGCCTTGCCCAGGGTCTTGCCCCTAAGCCCTAGCTCAAACATAGGTTCAGCTACTG-AACAATGG-TGACATGAGAAGGAAGTTTATTTTCCTCTCATGGGAAAGTCTGGATGAGGAGC-------------------------CCAGGCTGTCTGAGTCTTACTGATCTGTCACCTGTTTCGTGGTACAAAGTGACTACCTACCTCCAGCCATCACCTCTACATCCCCATCAGCAAAAGAGAAGAGGAGGAGGGCACATTTCTTTAAAAGAGTGACCTGGAAGTTGCCCGTGTGACTTGCTCTCACGCCTTATGGACCAGAACTGATCTACACGGCCGCAGCCAGCAGTAGGGGCAGC------------CTTTGTGCTGTGTGTCTGTGAACCCAGCTGCCAGGAGGGGCTCCCTCACTGCAGGACGAAGGGCAGATGGGTGCTG-GGGGAGCCCGCGGCATCTGCCTCCCCTCATCAGGCTCCTGCCCGCCCTGTGCCCC-CAG Canis_familiaris GTGAGTG-GCAGGAAGGGCAGAGATGGCCCTGCCTGCTGTCCCTTCCACTCTCGGACAGGCAGGACCCGTTACTTTCCCCACTGGCCTTCCCCAAGATCCTGCCCCAGACTCCTAGCTGTAGTCCAGATTCAGCTGCCATAACAGCAGCTTAAA-AAAAAGAAAGTGTGCTTTTCTCCGATGTGAGAATCTGGATGAGGAGTCCAGCCCTGGAG-------------TCAGGCTCTTTCTGTC---TTGACCTGCCACCTGTGTCAGGGCACAAAGTGACTGTCCACCTCCAGTCATCACCTCCACATCCCCACCAGCAGAAGGGAAGAAAAAGAGGGCACAGTTCTTTAAGGGGGTGACCTGGAAATTGCATGCATCACTTCATATGATATCCTGTAGACCAGAACTAACTTGCAGGGCCACACCT---------GGCAGCAGGGGAGTAGCG-TTTTTGCTGGGTACCCACGAACCCAGCTAAATTCAGGGGTTCATTTATTTAAAAGAAGCAGGGAGATGGGTGTTGCGGACAGCCAGTGGAGTCTGCCTCCCCTTATCAGCTACCTGTTCTCCCTA----CCTTAG Crocidura_russula GTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTGGGACCGCAGCGACGGCACAGTGGAAAGGGCAC---TCATTTCTCACCTAGCCCACCCAGTATCCTGTGATTCCTGAGCACAGAGCTAGGAGTTAACCCTTAGCTTTACTAGAAGTGGCCCCCAAATACAA-----------------------AGAAAAAGAGGGAGCTGAATGCAGGAAGCCATGGAGACAGCCCAGCTTGTGTCCTTCAGCCCCCACTTTCCC-------CTGAGCACAAAGACAGGCAAGATCATGGAC--TTTCCCTGGACTCCTCTGTGGGTGTTCAGA-------AGTTCAGTGACTAAAGAGGGAGGAATTCTAGATATTGGGGGCTGCCAACC----------CCCCTCA-GAAATGCCTCCTGACCCCGTCTTCCTTAG Equus_caballus GTGAGTGGGAAGGGCAAGCAGAGATGACCCTGCCTGGTGTCCTTCACACCCTCGGACAGGCAGGATCCGCTGCCTTCCCCACTGTCCTTTCCCAGGGTCCTGCCCCCAAGCCCTAGTTTGAATCCACGTTCAGCTGCTGTAACAGTGGCTTAAATAAGAAGGAAGTGTATTTTCCTCTCGTATGAAAGCCTGGATGAGGGGTCCAGGCCTGGTGTAGCAGCCTCTGGCCAGGCTCTTTCTGTCTTGTTGATCTGCCGCCTGTTTCATGGTGCAAGGTGACTGCCCTCCACCAGCCATCACCCCCACATCCCCACCAGCAAAAGGAGAGAAGAGGAGGGCACAGTTCTTCAAGGGGGTGACGTGAGAGTTGCACATGTCACCTCAGCTCACATCCTGTAGACCAGAACCAACTCATGTGGCCTCATCCAGGAGTAAGGGCAGCCAGGAAACGGAGCCTCATGGCGGGTGTCCGTGCACCCAGCTAAAGCTCGGTGGTTTGGTTACTAAAGGAAGAGGGGAAACGGCTGCTGGGGCAA-------GACTCTGCCTCCCCTCATCAGACAC-TCCCGTCTCTGTTCTCCTCAG Erinaceus_europaeus -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Felis_catus GTGAGTGTGAAGGGCGAGCAGAGATGGCCCTGCCTGGCGTCCCTCACGGTCCCGCAGAGGCAGGATCCGTCGCCTTCCCCACTGGCCTCT-CCAGGGTCCTGCCCCCAGACTCTAGTTCAAGGCCAGGTTCGGCTGCTGTAGCAGTGGCTTATTTGAGAAGGAAGTGTGTTTTCCTGTGATGTGAGAGTCTGGGTGAGGACCCCAGGCCTAAAGTCGCGGCATCTGGTCAGGCCCTTTCTGTCTTGTTGATCTGCCACCTGTGTCAGGGTCCAAGGTGACTGCCCACCTCCA--------------CATCCCACCAGCAAAAGGAAGGAGGAGGAGGGCACAGTTCTTTAA-GGGGTATCCTGGAAATTG--CATGTCACTTCAGATCACGTGTCGTAAACCAGAACTAACTCACGTGGCTGCAT------------GCAGCAGGGAAACGGCG-TTTTTGCTGGGTGGCCGTGAGCCCCGCTAAATTCAGGGCTTCGGTCACT-AAGGGAAGAGGGGCAGTGAGTGTTGGGGACAGTCAGCGGAGTCCGCCTCCCCTCATCAGACACCTCGCCTCTCTGTCCACTTCAG Homo_sapiens GTGAGTGTGGGGGGCAGGCGGAGACAGCCCCGTGTGACGTCCCTCACGCCCCC----------------CTCCCTTCCCCACTGGCCTTTCCCAGGGTCCTGCCCCTAAGCCCAAGCTCAGATCGAGGTTGACCTGCTGTCACAGTGGCTGAAATAAGAAGGAAGTGCGTTCT---CTCGCGTATGAGTCTGAGTCGGGGATGGTGTGGCCGCTTGGCTGCCTGTAGCCCGGCTCTTTCCATCCTGTTGGTCGGCCACCTGCCTCACGGTGCGAGGTGACTGCCCACCTCCAGCCATCACCTCCGCATTCCCACCAGCAAGG-------------CGCTTCTTTTCTTTAAGA------------------ACATGTCACTGCAGCTCACGTTTTACAGACCAGAACTAATTCCCCTGGTCACACCTAGCGGTAAGGACGGCTGAGAAA----GCTGTATGCTG-GTGCCCGTGTGCCAGGCCACAAGCCAGGGCTTCAGTTACTAAGGAAGAAGGGGACATGGGTGTTAGGGCCAACCAGCAGAGTCTACCTCATCTCACCCGACAACCTCCTGTCCCGTTTACCCTAG Macaca_mulatta GTGAGTGTG-GGGGCAGGCGGAGACAGCCCCCTGTGACGCCCCTCATGCCCCC-----------------TCCCTTCCCCACGGGCCTTTCCCAGGGTCCTGCCGCTGAGCCCAAGCTCAGATCGAGGTTCACCTGCTGTAACAGTGGTGTAAGTAAGAAGGAAGTGTGTTCTC-CCTCACGTATGAGTCTGAGTCGGGGACGGCGTGGCCGCTTGGCTGCCTGTAACCCAGCCCTTTCCATCTTGTTGGTCGGCCACCTGCCTCGTGGTGCGAGGGGACTGCCCACGTCCAGCCGTCGCCTCTGCATTCCCACCAGCAAGG-------------CACTTCTTTTTTTTAAGA------------------ACATGTCACTGCAGCTCACATTTTACAGACCAGAACTAATTCCCCTGGTCACACCTAGCGGTAAGGGCGGCTGAAAAATGGGGCTGTATGCTG-GTGCCCGTATGCCAGGCTACATGCCAGGGCTTCAGTTACTAAGGAAGAAGGGGACGTGGGTGTTAGGGCCAACCAGCAGAGTCTGCCTCGTCTCACCTGACACCCGCCTGTCCCGTTTACCCTAG Myotis_lucifugus -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Neomys_fodiens GTGAGTGGGGAGACCTTGGAG-------------------------------------GGCAGCATCC---------------GGCCTCTCCCG--GCCCCTCC---------TAGCTGGGCTTCAGGGTGAACTGTGCTGGCAAAAGCTTAGGAGCTCTTGTGGGTCGGCATCCATTCAGGTGCCCGCCTGGGGCCAGAGCCATAGCACAGCGGGGAA---CCCGGTCAATTCCTGGCATCCCATGTTGTCCTCCGAGCACCGCTGAGTGCAGAGCCAGGAGTAACCCCTGAGCAATGCCAGTGTGGCCATA--------------------------------AAATCAAAGAGTGGGCGCATACCTGCAGCCATCAGGTCTGT---------------CGGAGCTGACTCATTT------------------AGGGAGCAGAAAGGGAAGG-----------GGGGGTCTGTACCCCACCAGA------------AGTCACTGAAGAGGGCGGGCATCTGGGTATTGGGGATGGCCAGCC----------CCCCTCAGGAGACACCTCCCAACC-------CCTCAG Pteropus_vampyrus GTGAGTGGGAGGGGCAGGCAGAGGTGACCCTACCTGGTGTCCCT---------GGACAGGCAGCATCCGCCACCCTCCCTGCTGGCCTTTCCCAGGGTCCTGCCCCCAATTCCTAGCCTGAATCCAGATTTAGCTGCTGCGACAGTGGCTTAAAGAACAAAGTCATGTATTTCACTCTTCCACACGAAC---AGTTCAGGCTGGTCTCCTGGAGTAGCAGCTTCTGGCCAGA--CTTTCTATCTTGTTGATCTGCCACC--------------AGGTGACTGCCTACTTCCAGCCATCATCTCCACATTCCCACCAGCAAAAGGAGAGAAGAAGAGGGCACAATTCTTTAAGGGGGTGACCTGGAAGTCACACATGTCA-------------CTTATAGACCAGAACTAACTCGTG-------------------AGGGAGCCAGGAAATGGGCCTTTGTGCTGGGTGTCTGCCTGACCAGCTAAAGTTCGGGTTTGCTT----------AGAAGGGGAACTGGAGGTGGGGGACAGCCAGCAGAGTCTGT--CCCCTCATCAGACACCTCCCATCCCTGTCTACCTCAG Sorex_coronatus GTGAGTGGGGAGGCTTCGGAG-------------------------------------GGCAGGACCC---------------GGCCTCTCTCAGGGTACTGCA---------TAGTTGGGGTCTGGACTCAGTGGGGCCGACTGAGTCTTAGGAGCACATGGTGA--------------------TACCCGGGGCCATAGCCATGGCACAGTGGGGAGGGCACTTGTGGCATGCAGCCAACTTGGGTTCGATTCCTGGCATTCCTGGATGCAGAGCCAGGAGTAATCCCTAAGCACCTGGGGTGTGGCCCCCCAAACAAAA-----------------------AGACACAAAAGTGACTGCGCACCTGCAGCTGTCACATCTGCACCCCCGCCAGGCGACAGAGCTAACTTGCCC------------------AGGGAGCGAGCCTGTGGAG-----------GGGTGTCTGTGCCCCACC{AG}GA------------AGCCACTGGAG{CG}GGGAGGGAACCATGGTCTTGGGGTAGGCCAGCC----------CCACTTAGGAGATACCTCCCAACC-------CCTCAG Tursiops_truncatus GTGAGTGGGAAGGGCAAGCAGAGACAGCCCTGCCCGGTGTCCCCCACAGCCTCGGGCAGGCAGGATCAGCCGTCTTCCCTGCTGGCCTTTCCCAGGGTCCTGCCCCCAAGCCCCAGCTGGAATCCAGGTTCAGCTGCTGTAACAGTGG-TTACGTGAGAAGGAAGCATATTTTCCTCTCATATGAAAGTCTGGATGAGGAGT-------------------------CCAGGCTCTTTCTGTCTCATTGATCTGCCATCTGTTTCATGGTACAAGGTGACTGCCCACCTCCAGCCATCACCTCCACATCCTCATCAGCAAAAGGAGAGAAGAGGAGGGCACATTTCTTTGAGGGAGTGGCCTGCAAGTTGCACATGTGACTTCAGCTCACATCTTGTAGATCAGAACTAACTCCCATGGCTGCATCCAGCCATAAGGGCAGCCGGGAAATGTAGCTTTGTGCTGTGTGTCCGTGAGCCCAGCTATAATTAGGGGTTTTGCTACTGAAGGAAGAAGGGGAAATGGGTACTG-AGAGAGCCAGCAGAGTCTTCCTCCCCTCATTGGGCTCCTCTCCGCCCTGTCCCCCTTAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23454] TITLE Neomys_SLA_intron_2; LINK TAXA = TaxaForAnalysisStep14251; DIMENSIONS NCHAR=813; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ailuropoda_melanoleuca GTGAGTGGCTTTCCAAATGTTTCACAATCCCTAAAAAGGGTGAACTTGATTTGAGTGGGAATCATTAGATTTTAGCTATAGTTGTCCAACTCCACTCAGGCCCTGGTCCTATTGTGAGGTGAGATATTTGGCCCATACAGCGGATCCTAGTGCTTAA--TCCTTAATACTGCCAGTGCTCTAAAACCTTCAGTGGCTGCCCATTGCCTGGTGGGTTAAATTTAAATTCCTT-ACTTGGCTTTTGAGACCCTTTATGGTCCAACTACTGCTTCTTACATTGGTCTCATCTTCCACC---CGTGCAGTGCTGATATTATAGACCAGCACAGTGGCAGGCAGGAGGACCCGGGGGTCTGAGAAAG--TCTGATGATAAAAGAAAGTATTGCCTTCCATCCTGCTGTCCTTCCTGACT-AAAATGGGCTATAGAACAAATAGGGGGCTCTAAGCTCTTTTTATTTAGATTCTCATTGACACAGACA-----AGCTATCTTGGTTATACTGCAGGGTGTAATTCTGCATAGTAAACATTTGTTTTTAAAAGGCCCCCAATTCT-----GGCACATCTGCTGTGGATCCCCAAAAGATGGCTAGTGCCAGTACACGGGAAGGGTTCCTG-------------------------------------------------------------------------------------------CCTTATGTGCCCCAGATAAAATCTGATTCCTCTG----TTCCTGCATTCACTTTGCCACTCACACATCCACCCTCTCTCGTCTGTCCTTGTTCTTCCAG Bos_taurus GTGAGTAGCTTTCCAAAACTTCTATGATGCCC------GAAGAACTCGACGCTGGTGGGAGTTGTTAGATTTTCTCTATGGTTGTCCAGTTCCCCATGGGCCCTGGTCCTGTTGTGAGCTGAGAACGTTGGCCCAAACAGCGGGCCTCCAGGCTTAACCTCCTGACTGCTGCTGGTGCTCTAAAACTTTCCCTGGCTCCCAGTTGCCCAATGGATAAAACTGAAATTTCTTAACTTGGCTTTTGAGACCCTTTACGATCCAGCTTCTATTTCTTATGTTGGCCTCATCTCCCCCCACAAGGGCAAGGTTGAGGTTATACATTAATGCAGACTCAGG-AAGAGGACTCAGGAATCTGGGGGAACTTCTGATGATAAAGAAAAGTATTGCCTTCTGACCTGTTGTCTCTTTAGATTTGAAAAAGGCTGTAGAAGACAT-AGGGGCTCTGAGCCCCTTTTATTTAGATCCTCACTGATGTAGACATGTGAAA----CTTGGTTACATCTCAGGGTCTAATTCAGCAGAGTAAACCTTTATTTTTAAAAAGCCTCCAACCATAGCTAGAAACATCAGCTGCTGATCCCTGAAAGGTGGCTATTGCCAGCACATGGGAAGACTTTCTGTTTAGATCAAAATGGGGGGATATCAAAAACTAATTTTCGTAGGAAGAAGTCTAGTTAATGTGGCCAAGGACAGACCTTAAAAAAGGAACATCCCAACACACGTGGGATTAAATCTGGTTATTCTGTTCATTCATTAAATCAC-TCACCACTTCCCCAGTCACTCTTTTCTATTTGTTCTTATCCTTCTAG Canis_familiaris GTGAGTGGTTTTCCAAATGTTTCATAATCCCTAAAATGGGTGAACTCGATTTAAGCAGGAATCGTCAGATTTTAGCAATAGTTGTCCAACTCCACTCGGGCCCTGGTCCAATTATGAGGTGAGAAATTTAACCCGTACAGCAGATCCTTGTGCTTAA--ACCTTAATACCGCCAGTGCTCTAAAACCTTCAGTGGCTCCATGTTGCCTGGAGGATTAAATTTAAATTCCTTAACTTGACTTTTGAGGCCCTTTTTCGTCCAGCTTCTGCTTCTCATGTTGGTCTCACCTTCCATC----------------CTTCCTAGACCAGTGCAGTATCAGGCAGGAGGACCCAGGGGTCTGAGAAAGCTTCTGATGAGAAAAAAAAGCATTGCCTTCCATCCTGTTGTCTCTCCTGACTCAAAATGGGCTATGGAACAAATAGAGGGCTCTAAGCTTCCTTTATTTAGGTTCTCATTGATACAGACA----GAACTATCTTGGTTATATTGTAGGGTGTAATTCTGCGTAGTGAACATTTATTTTTAAAAAGCCTCTAATTCT-----GATCCATCAGCTGCGGATCCCCAAAAAATGGGTAGTGCCAGCATGTGGGAATGGCTCCTGCTTAACCCGGGATGAG-GGATATTAAAAACCAATTTGCATATGGAGA---------AATGTGGTCACTGGTGGGTTTTAAAAAAGAAACAGCCTTACGTGCCCGAAGTTAAATCTGATTACTCTG----TTCACTCACTCGCTTTGCCACTCACCCATCCACCCTTTCCTATCTGTTCTTGTTCTTCCAG Crocidura_russula --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Equus_caballus GTGAGTAGCTTTCCAAAACTTTTATAATTGCCCAAAAGGATGAACTCTATGTCGGTGGGAGTCATCAGATTTTAGCTACAACTGTCCAATTCCATGCTGGCTCTGGTCTGATTGTGAGGTGAGAAATTTGGCCCATACGGCAGGCCTTCAAGCTTAACCTCCTCAATGCTGCCAGTGGTCTAAAACCTTCAGTGGCTCCCCATTGCCTGATAGGTAAGATTTAAATTCCTTAAG-TTGGTTTTGACACCCATTATGATCCAACTTTTGCTTCTCATATTGACTTCATCTCCCACCATACATGCAGTGTTGATATTATATACCAGTGCAGACTTGGGAAGGAGGACCCAGGGTTCTGAAGAAACTTCTGCTGATAAAAAAAAGTATTGTCTTCTATCCTGTTGTCTCT-CTGGTTTGAAACAGGCTATAG-AGAAAT-AGCAGCTCTAAGCCCCTTTCATATAGATCCTTATTGATATAGGCACGTGAAACTAGCTTGGTTCTCTTGCAGAGTAGAAATCAGTGTATTAAACATTTA-TTTTAAAAAGTCTCCAATGGTAGCTGGAAACATAGGCTGCTGATCTCTGAAAGGGGCCTATTGCCAGCCCATGAGAAGATTTCCTGGTTAGCTTGGAATGGG-GGATATTAAAAACTAATTTTCATATGGAGAATTCGGGAC-ATGGGGCCAATGATAGGTGTTTAAAAAGGAACGTCCCGAGGTGCCCCAGATTAAATCTGATGTCTCTGTTCATTCACTCATTTGCTTTGCCACTTACCTC-TCTCCCTGTCCTCTCTGTTCTTCCTCTTACAG Erinaceus_europaeus GTGAGTAATGTTCTAAAACTTTCGCAACCCCCAAAGGCTACAAACTTCATTTAGGCGGGAATTGGTAGATCCTAGGCGTCTCTCTCCAATTCTACAAGGTCC----TGTGATGATGAGGTGTGGCATTTGGTCCATGTATAAGGCCTTAATGTCTAACTTTCTTAATACCACCGAGGCAACAATGCCTTTAGTGATACTTTACTCTCTGAGGGATAAAACTGAAATTTCCTGACATGGTTTTTGAGACCTGTTCTATTCCAACTTCTGCTTCTTGTGTTGCCCTCAGCACCCTC-ATTTACTCAATGTTGATA-TACCTATCAACACAATCTTGGGAAGAAAGAC-CGGGTATCTAATAA----------------GGAAATTACTGTTTTTCCTTTTTTTTTTTCTCCTCACTCTAAATAACTCA----GGACATAAGAGGCGTCTAACCCCACTTAATTACGTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Felis_catus GTGAGTGGCTTTCCAAATGTTTCACAATCCCTAAAGGGGGGGAGCGCTATCTGAATGGGGATCATTGGATCTTAGCTATAGTTGTCCAGTTCCACTTGGGCCCTGCTCCAATCATAAGGTGAAGAAATTGGCCCACACAGAAGATCTTAGCGCTTAA--TCCTTAATGCTGCCAGCGCTCTAAAACCTTCAATGGCTCCCCATTGCCTGGTGGATAAAATTCAAATTCCTTAACGTGGCTTTTGAGACCCTTTGTGATCCAGCGTCTGTTTCTCACATTGGTCTCATCTCCCACC----ATGCAGCATTGGTATTATAGACTGGTGCAGTTCCAGACAGGAGGACCCAGGGTTCTAAGAAAATGTCTGATGATAAAAGAAAGTACTGACTCCCATCCTGTTGCCTCTCCTGACTCAAAATGGGCCACAGAACAAATAGGGGGCTCTAAAACCCTTTTATTTAGATTCTCATTGACACAGACAAACTAAACTATCTTGGTTCTATCTCAGGGTATAATTCTACATAGTAAAGTT---ATTTTTAAAAGCCTCCAATTCT-----GGCAGATCACCTGTGGGTCCCCAAAAGATGGCTAGTGCCAAAGCATGAGACGCATTCCTGGTTAGCTTGTAATAAG-GGATATTAAAAACTGATTTCCCTATGGAGAATTGAGGTCAACACGATCAACAATGGGTCTTAAAAAAGAAACGGCCCTACGTGCCCCAGGTTCAATCTGGTTACCCCA----CTCATTCCTTTGCTTTGCAACTCACCTGTCCACCCTTTCCTGTCTGTTCTTGTTCTTACAG Homo_sapiens GTGAGTAGCTCTCCAAAACTTGTGCAATCTTCAAGCAGGATAAACTTGGTTTGGGAGAAAAGTATTTGATTTTAGCTAGAGTGGTCTAGTTCCACATGAGTCCTGGTCCTATTATGAGGTGAGAAATTTGACCCATACTGCAACCTT----------CCTCTTTAATGTGGCCAGTGCTCTAGAACCTTCCATAGCTCCCCACTGCCTGGTAGATCAAATTTAAATTCCTTAACTTGGCTTTTGAGATCCTTTATGATCCAGCCTC---TTCTCATATTCTTCTTATCTCCCACCACATGTGCAGTGTTGATGTTATGTAGGAATGAAGACC-GGGAAGGCAGCCCCCAGGGTCTGGAAATCCTTCGGATGAGAAAACAAAAATTTGCCTTCTCTCCTCTTACCTCTGCTGATTCAATATGGGCTATAGAACATGACAGAAGTTCTAAGCCCCTTTTATTTAGATCTTCACTGATTCAGATATATGAAACTATTTTGGCTATACTGCAGAGCATAAATCAACATAGTAAACATTTATTTTTAAAAAGCCTCCAAC---AGTTGGGAACATTAGCTGCTAATCCCTGAAAAGCAGCTATTTCTAGCACATGGGAGGGTTTACCAGTTGGCTTGCAATGGAGGGCTATTAAAAAGAAATTTTCAGATGACGAATATGGGTTAACGTGGCCAGTGACAGATCTTAAAAGAGGAATGTTCCAAACTGTCCTGGGTTAAATCTGATTACTCTGTTCATTCATCCTTTGGTTTTGCTATTTACCTATCTCTGTGTTCTTCTCTGTTCTTGTTCTTACAG Macaca_mulatta GTGAGTAGCTCTCCAAAACTTGTGCAATCTTCAAATAGGATAAACTTGGTTTGGGTGAAAAGTATTTGATTTTAGCTAGACTGGTGTAGGTCCACATGAGTCCTGGTCCCATTACGAGGTGAGAAATATGACCCATACTGCAACCCT----------CCTCTTTAATGTGGCCAGTGCTCTAGAACCTTCCACAGCTCTCCACTGCCTGGTAGATCAAATTTAAATTCCTTAACTTGACTTTTGAGATCTTTTATGATCCAACCTC---TTCTCATATTCTTCTTATCTCCCACCACATGTGCAGTGTTGATGCTATGTAGGAATGAAGACT-GGGAAGGCAG-CCCCGGGGCCTGGAAATCCTTTGGATGAGAAATAAAAGATTTGCCTTCTCTCCTCTTACCTCTGCTGATTCAATATGGGCTATAGAACACGACAGGAGTTCTGAGCCCCTTTTATTTAGATCTTCATTGATGCAGATAATTGAAACTATTTTGGTTATACTGCAGAGTATAAATCAATATAGTAAAGATTTATTTTTAAAAAGCCTCCAAC---AGTTGGGAACATTAACTGCTAAACCCTGAAAAGCAGCTATTTCGAGCACACGGGAGGGTTTCCCAGTTGGCTTGCAATGGAGGGCTATTAAAAAGGAATTTTCAGATGATGGATTTGGGTTAACGTGGCCAGTGACAGATCTTAAAAGAGGAATGTTCCAACCTGTCCTGGGTCAAATCTGATTACTCTGTTCATTCATCCTTTGGTTTTGCTATTTACTTATCTCTGTG---TTCTCTGTTCTTGTTCTCACAG Myotis_lucifugus GTGAGTGGCTTTCAAACCTTTACACAGCCCCCAAGAAGGATGAACTCGAT-TGGGGGGCCGTGGTTAGGCTCCAGCTGTAGCTGTGCAATTCCCTACGGGCCCTGATCCCCTAGTGAAGTGAGCCG-TTGGCCCACACAGAAGACCTTCATGCTTCACCCGCTTCATGCTGCCGGTGCTCTCAAACCTCCAGTGGCTCCCCATTGCCTCCTGGAGAACAATGTAAACTCCCAG--TGGCTTCTGAGGTCTTTTA------------------TCGTATTGGTCTCAGCTCGCCCCACACGGGCGCTGTTGATAACATATGCGAGTGCAGGCCCAGGAAGGAGGACCCAGGGG-CTGGGGAAACTTCTGATGAATGAGCCCAGTATTGCCTTCTATCCTGTTGTCTCTGCTGGTTTGAAATAGTCTCCAGAACAGGGATGGGG-----AACCCTTTTTATTTATAACATCATTTGTATCAACTTAAGAAACTAG---------CCTGCTGTATTTGGTCAAACATTTCATTAACTCAGATTTCTCAGGCCTCCTACCCTAGTCAGGCAC----GCCCTTACTTGCAAACAGCCTCCAATTGTGGATCCGTGGGAAGATTTCCTAATTAGCTTGGCGTGTGGGGGTGTGAAAAACTAATTTTCATATGGAGAATTTGGGTCA--ATGGCCAGTGAAGGATCTTAAAGAACAAG-GTCTCCACGGGCCCCGGGTTAAATCCGACGTCTCTGTTCATTCATGCGTTTGTTTGGACAATTAGCTT-TGACCCTTCCCTCCCTGCTCTTGTTCCTGCAG Neomys_fodiens GTGAGTAAATGTTTAAACCCAAC--------------------------------------------------------------------------------------------------------------CAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCC------------------------------------------------------------------------------------CCCTGCCCTGCCAATGGGGTCTAAATTGGGTAGTAAAGATTTAATTTGTTTAAAAATCTGATTGT----GAAAACACTAGTGGTGACTTCCCAACA---------------TGTGTGAAGAGACCCCCAAATATTTTGGAATGGGTGGAGGATGTACTACAAAGTTACATAT-----------GTCACTAAGACCAATGATAGGTTTTAATTAAAAAGTGTCCCAACTTGCCCTGATTTAAAT{AC}TGATCACTCTGTTCATTCATTCATTAGCTATTCCTTTTAATTTTATGTTTACCCTTTCTTCTCTTTTTTATTCCAG Pteropus_vampyrus GTGAGTAGCTTTCCACAACGTTTACAATCCCCACAAAGGATGAACTTGGTTTGGGTGGAAAGAGTTAGATTTTAGCTATAGCTGTCCAGTTCCACATGGGCCCTGGTCCTATTGAGAGGTGAGAAGTTTGGCCCAGACAG-AGGCCTAAATGCTTGACTTCCTTAATGCTGCCAGCACTCTAAAACCTCCTGTGGCTCCCCAATGCCTACTGGATGAAAGTTAAATTCCTTAA--TGGCTTTTGAGACCCTTTATGATCCAGGCTCTGCTTCTCACGTTGGCCTCATCTCCCAGCACACATGCAGTGCTGATATTATCTACCAGTGCTAGCTCAGGACGGAGGACACGAGGGTCTGGAAAAACTTCCGATGACAAAAAAAAGTGTCGCCTTCTATCCTGTTGTCTCTCCTGATTCAAAACAGGCTGTAGAAGAGAT-GGAGGCTCTAAGCCCCGTTTATTTAAACCCTCGTTGACAGAGACACACTAAAGTATCTTGGTTATATCGCAGGATGTGAGTCAGTATAGTAAACATTTATTTTTAAAAAGCTTCCGGTTGTAGTTAGAAACACCAGCTGCTGGTCCCAGAAAGGTGGCTATCGCCAGCATGTGGGGAGATTCTCTGCTTAGCTTGAAGCGGGAGGATATTAAAAACTAATTTTCATAGGAAGAATTTGGGTCAACGTAGCCAATGACAGATTTTAAAAACTAAG-GTCCCTATGTGCCCT-GGTTAAATCTGATTACTCTGTTCATGCATTCATTCGCTTTGCCGTTTACCCATCTACGCTTTCCTGCCCTCTCTTTTCCT-ACAG Sorex_coronatus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tursiops_truncatus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23448] TITLE Neomys_GDAP1_intron_1; LINK TAXA = TaxaForAnalysisStep14251; DIMENSIONS NCHAR=689; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ailuropoda_melanoleuca GTAAAGGCCTCTGCTGGGGCGGGAGGCGAGGATCGGGTTTCAGCACCGGGACAGCTCCCTGAGGGT-TCTCCCCGGTACTCCCGCGCATCTAGAATCAGGCCTCCAAAACCCTAATCCGGGTGGGCACCCTGGAGGGCAGGGATGCGCC-TGGGGAGCACAGATAATTAGTCTGAGATGAAGGCTATGACTCAGGCTTTGCTACTCATGAAATGCGACAAAAAAGCATCACTTTAGGTATTTGGGCCAGAGGCCTTGTCCCCTGGGCCTTGGAGGGTGAGGCAGAGGGAAGCGCTTTCATGCAACCGTAATCTACAGTTCCTTCTTT------TTCTTGTACACATTCGCTCTCTTCAACAGGGCCTAGCACATCTATATATCAGATTCTTGTCTGGGGAGGGCACATAATTAGGCTTAGGACAGAAAGAAAGTAGTGGTGATG--GAGAGTCACTGTGGAATAAATTTAGCCAGAATTATTTTCATTCCGTATTTTATCTTTCTAATTTATATGATTAAGACGCTAGAATATA--TCACTTGTTAATTCCTGGAATAGGAATAGTTAAAAAGAATGTTG---ATAATAATAACTTAGGGAAGCACGGAAAGGCTGCTTAATGGTAT-CAGGGATGACATTTAATTGAAAGCCTACATGTGTTGTAGTAACCAGTGTGAACTCTTTCAG Bos_taurus GTAAAGGCCTTGGCCG-GGCGGGCGGCGCAGATCGGGTTTCAGCACCTGGACAGCTCCCGCTGGGTGCCGCCCGGGGAAGCCCGCCCACCGAGA------CCTCCAACTCAACCCCTGCGGGCGGCGCCCTGTGGGGCAGGGGTGCGCTTTGAGGAGCAGGGAAAATCAGTCTGAGATGAAGGCCGTGACTCAGGCACCGCCACTCATGAAATGCGACAGAAAA-CATCACTTTCGGCGTTGGGGCGGGAGGCCTCGTCTCCGGGGCCTTGGAGAGTGAGGCAGAGGGAAGCGCCTTCCGGCAACCCCCATCCAGGGTTCCTTCTTTTACTCTTGGTTGATTGACTTT-------TCAAC-AGGCCTAGTGTATC--TGTTTCAGGTTCTTACTATGG--GGACGCATCATAAGGTTTAGGACACAAAGAAAGTAGTAGTGATGAAGAGGGTGACCGTGGACTGAATATTGCCAGAATCATTCTCATTACGTATC----TTTTCTAACTTACAAGATTGAGGTGCGAGAATATGTCTCACTTGTTAATTCCAGGAATAG----AGTTGAAAGGGGTGTTGAAAATGTTAATAACTCAGGGAAGCACAAAAAGGCTGCTGGCTGGTATCCAGGGATGTCATTTAATTAAAAGCCTACCTGCGTTGTGGTAACCAATGTGAACTCTTCCAG Canis_familiaris GTAAAGGCCTCTGCCGGGGCGGGCGGCGCCGATCAGGTTTCAGCACCGGGACAGCTCCCCGGGG---CCCTCCGGGCACTCGG---CCTCCAGAACCGGGCCTC-----------CCCGGGCGCATCCCTTCGAGCGC--------------------------ACTTAGTCTGAGATGAAGGCTATGACTCAGGCTCTGCCGCGGATGAAATGCGACAGAAAAGCATCACTTTAGGTGTTTGGGCGGAAGGCCTTGTCCCCTGGGCCTTGGAGAGCGAGGCAGAGGAAAGCGCCTTCCTGCAACCATCATCT---------TCTTTTAC---CCTTTGTACGCATTTGCTCTCCTCCACAAGGCCTAGCACATCTAGATATCAGATTCTTTTCTGGGGAGGACACATAATTAGGTTTAGGACGCAAAGAAAGTACTGATGATG-GGAGAGTCACTGTGGAATAAATACAGCCAGAATTATTTTCGTTCCTCATTTTGTTGTCCTAATTTATATGATTAAGATGCTAGAATATATCTCACTTGTTAATTCCGAGGACAGGAATAGTTAAAGAGGTTGTTG---ATAATAATAACTTAGGGAAACACAGAAAGGCTACTTAATGGTATCCAGGGGTGTCAGTT-----AAAGCCTGCATGTGTTGTAGTAACCAGTGTGAACTCTTTCAG Crocidura_russula ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Equus_caballus GTACAGGCCTCGGCTGGGGCGGGCCTCGCGGATCGGGTTTCAGCACCAGGACAGCTCCCTCTGGGTCTCGCCC-GGTCCGCGGGCCCACCGAGAAATGGGCCTCCCACGCCCTAA-CCCGGCGGGCGCCCTGGAGGGCAGGGATGCTCCTTGGGGAGCAGAGAGAATCAGTCTGAGACG-----------AAAGGCACTGCCACTCGTGAAATGCGACAAAAAAGCATCACTTTCGGTTTTTGGACTGCAGGCCTTGCCGCCTGGGCCTTGGAGACTGAGGCAGAGGGAAGCGCCTTCCTGTAAATATAACATACAGTTCCTTCTTTTACTCTTTCTTGTTCGTATTTACTCTCTTCAACGAGGCCTAACATACCTATATTTTAGATTCTTGTTGGGGGAGGACACATAATTAGGCTTAGGACCCAAAGAAAGTAGTGGTGATGACAAAGGTGACTGTGAAATGAATATAGCCAGAATCATTCTTATTTT-------ATTTTTCTAATCTATAAGAGTAAGACTCTAGAATATATCTCACTTATTAATTCCAGGAAAAGGAATAGTTAAAAAGAATGTTGAAAATATTAGTAACTCAGGAAAGCACGGAAAAGCTGCTCAGTGGTGTTCAGGGACGTCATTTAATTGATGGTCTGGATGTGTTGTGGTAACCAGTGTGAACTCTTCCAG Erinaceus_europaeus GTAAAGGCCTTAGTCCTGGCAGGCGGCAAGGATCGGGTTTCAGCACCCGGACAGCTCCTTCTGGGTCGGGCTAG---------GCGGGACCAGAAACCTGTCTC???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TC---------------------------------------TCCAGCAGGTGGGGAGCTGGGGGCTCAAACCAGGATCC---------------------------TTCGTATATATGCGCTCAACCTGGTGCGCCACCGCCCGGTTCCCTATTTCAGGTTCTTATCTGGGGAGGATACA--ATTAGGTTTAGGATACAAAAAAAAATGTGATGATGGAGAGGGTGAGTTCAGTCTCAACACAGCCAGAATAATTTTCTGTACTTATTTTATTTTTCAATGTCATGAGGATAAGATGCTAGAATATATCTAACTTATTGATTCCAAGTATAAAAATAGCAAAAAAGAATGTTGAAAATATCAGTAACTCAGGGAAAAACAGAAAAAATGCTTTGT-GTATCCAAGGATGCCTTTTAATTGGAAG--------CTTTGTAGTAACCAGTGTGAACTCTTCCAG Felis_catus TTACAGGCCTCTGCCGGGGCGGGCGGCGCGGCTCGGGTTTCAGCACCGGGACAGCTCCCTCAGGGC-TCTCTCGGGTACTCCGGCGCATCTGCAAGTAGGCCTCTAAAGCCCTAACCCGGGCAGGGCTCCCTGAGGGCAGGGATGCGCGCTAGGGAGCACGGATGATCAGTCTGGGATGAAGGGTATGACTCAGGCTTTGCCACTCATGAGATGCGACAAAAAAACATCACTTTAGGTATTCGGGCAGGAGGCCCTGCCCCCTGGGCTTAGGGGAGTGAGGCAGAGGGAAGTTCCTTCATGCAACCATAATTTACAGTTCCTTCTTTTACTCTTTCTGGTACGCATTCGCTCTCGTCAACAAGGCCTAGCACATCTATATATCAGATTCTTGTCTGGGGAGGACACATAATTAGGTTTAGGACGCAAAGATAGTAGTGGTGATG--GAGAGTCACTGTGGAATAAATATAGCCAGAATTATTTTAATTCCTTATTTTATTATCCTAATTTATATGAGTAAGA-GCTAGAATATATCTCACTTGTTAATTCCTAGACTAGGAATAGTTAAAAAGAATGTGGAGAATATTAATAACGTAGGGAAGCACAGAAAGTCTGCTTAATGGTATCCA-GGATGTCATTTAATTCAAAGCCCACATGTGTTGTAGTAACCAGTGTGAACTCTTTCAG Homo_sapiens CAACAGGCCTTGGCGGCGGAGGGTGGCGCGGATCGGGCTTCAGCACTGGGACAGCTCCTTCTGAGTCCCGCCCAGGGAAGCCGGTCCACCTAGAAATCCGCCTCCAGTGTCCTGACCCCGGGCAGCTCCCTCCA-GGCGGGGACGCGCCCGGGGGAGCGGGGAGAATCGATCGGAGATGGTGGCTATGGCCCAGGCTCCGCCTCTCGCGAAATGCGACAAAAAAGCATCATTTTCAGTATTTGGTCTGGAGGCCTTGCCTGCTGGTCTTCGGAGA--GAGGCAGAGGGAGGTGCCTTTGTGGACCCATAATCTGCGATCTCTTCTTT------TGCTCTCTCGCATTCACTGTCTTCAGCAAGAGCTGATGTACCTACATGTCAGGTTCTTGTCTGGGGAGGACCCATAATCAGGTTTAGGACACCGAGAAAGTGGTAGTGATGAGGAGGGTGACTGTTTAATGAATACAGTCAGAATCATT-TCATTACTTATTTTGTTTCTCTTAATTTGTTGAGTATTGTTCT------TTCCTTACTTGTTAATTCCAGGAATAGGAATTGTTAAAACGACTGTTGAAAATGTCGGTAACACAGGGAAGCCCAGAAAGGCTGCTTAGCGGTGTCCAGGGAAGTCATTTAATTGAAAGCTTACATGTGTTGTAGTAACCAGTGTGAACTCTTCCAG Macaca_mulatta GTACAGGCCTTGGCGGCGGAGGGTGACGCGGATCGGGCTTCAGCACTGGGACAGCTCCTGCTGGGTCCGGCTCAGAGAATCCGTTCCACCTAGAAACCCGCCTCCAGCGTCCTGACCCTGGGCAGCTCCCTCCA------GGATGCCCCCCGGGGAGCGGGTAGAACCGGTCTGAGATAGTGGCTATGACCCAGGCTCTGCCTCTCGCGAAATGCGACAAAAAAGCATCATTTTCAGTATTTAGCCTGGAGGCCTTGCCTGCTGGGCTTCGGAGA--GAGGCAGAGGGAGGTGCCTTCGTGCACCCATCATCTGCGATCTCTTC---------TGCTCTCTCGCATTCACTTTCTTCAGCAAGAGCTGATGTACGTACATGTCAGGTTCTTTTCTGGGGAGGGCGCATAATCAGGTTTAGGACGCCAAGAAAGTGGTGGTGATGAGGAGGGTGACTGTTTAATGAATACAGTAAGAATCATT-TCATTACTTATTTTGTTTCTCTTAATTTGTTGAATATTGTTCT----------GTACTTGTTAATTCCAGGAATAGGAATTGTTAAAACGACTGTTGAAAATGTCAGTAACACAGGGGAGCCCAGAAAGGCTGCTTAGCGGTGTCCAGGGAAGTCATTTAATTGAAAGCTTACACGTGTTGTAGTAACCAGTGTGAACTCTTCCAG Myotis_lucifugus GTAAAGGCCTCGGCCGGGGAGGGCGGAGAGGATCGGGTTTCAGCACCAGGACAGCTCCCTCGGGGCCTGGCCCG----CGCTGGCCCACCTGGAAACAGGCCTCCAGGGCCCTGACCCCACCAAACTCCCTCCAGGGCAGGGATGCGCCTTGGGGGGCAGGGAGCATCAGCCTGAGGTGAAGCCTATGCCCGAGGCGCTGCCACTCACGGAATAAGAC-CAAAAGCATCACTTTCGGTGTTTGGGCTGGAGGCCTTGTCCCCTGGGCCTCGCAGAGTAAGGCAGAGGGAAGCGCTTTCAAACAGCCAACACCGA----------TCTTACTCCATTTTGTTCCCATCCATTCTCTTTCAAAAGGTCTAGCATATTTGTATTTCAGTTTCTTCTTTGGGGAGAATA--TAATTAGGTTC-GGGCACAAAGAAAGTATTGGTGATGGGGAGGGTGACT---GAATTATTGTAGCCAGAGTCAGTGTCATTACCGATC----TTTTCTAATTCATAGGAACAAGACGTTAGATTGTATCTGACTTGTTAATTCTAGAACAGGAAACAGTGACAAAGGATGTTGAAAACATTCATAACTCAGGGAAGCACAGAAAAGCTGCCTAGTGGTATCCAGGGATGCCATTTAATTGAAAGCCCCCATGCTCTGTGGTAACCGGTGTGACCTCTTCCAG Neomys_fodiens GTGACGGC--CTGGCGGCGCGCGCGGCGCGGATCGGGTTTCAGCACCAGGACAGCTCCCAGGGTCCGGGGCTGG----CGCCGCCACCTCTTG---CAGGCCTC---------AAGGCAATCTCGTCCTTCCAGGGAC---GCTGCACCTTCTGGAGCTTAGAGGA-AGATCTGAGCTCATGGCTGTGACCCTGGTCTTGCCACTCATAGAAGGCGACAGCGAAACATCACTTTTGCCAGACGGGGTGGAGGCCTTGTCCCCTGGGCCGAGGAGAGAGATGCAGAGAGAAACGCCATT-----------ATCCACAGTTACCTCCTTTAGCATTTCTTGTTTACCTTCATTTTTTTTAATAAGGCCAAGC-TTTGTGTATTTCGGGGTTTTATCTGGGGATGACA--AGATTAGGTTTAGCCTCCCGCCCCCCTAGTGGTGATGGGGAAGGTGGCTGCAAAATGAATGTTACTAGAATCATTTCCGTAACATATTTATTTTTTTGACTTCGTAAGTGTGAGACTCCAGACTATACCCCACTTGTTAGTTTTAGGAATAGAAAAAGTTGAAAAGATTATGGGAAATGTAAGTGTTTTGGGGAATCCCATAAAGGCTGCTGATT-ATGTCC-GGGATGACATGTAACTGAATGCCCACCTGTGTTGTAGTAACCACCGCGGACTCTTCCAG Pteropus_vampyrus GTAAAGGCCTCG--CGGGGCGGGCGGCGCGGATCGGGTTTCAGCACCGGGACAGCTCCCTCTGCGCCCCGCCCG-----GCCGGCCCACCTAGGGACAGGCCTCCCACGCCCTAACCCCTGCTACCTCTCTCGGGGATACGGATGCACCTTGGGGAGCAGAGGGAATCGGTCAGAGATGAAGGCTATGACCCAGGCACTGGCACTCACGAAATGCGACAAAAAGGCATCACTGTAGGT---------GGGGGCCTTGTCCCCTGGGCCTTGCAGGGTGAGGCAGAAGGAAGCGCCATCAAGCAACGATAACCTACAGTTCCCTCTTCTACTCATTCTTGTTCCCGTCCACTCTCTTCCAGAAGGCCTAGC--ATCTGTATTTCCGGGTCTTGTGGTGGGGGGACATGTGATTAGGTTTAGGGTGCCAAGCAAGCAGTGGAGACGGAGAGGGTGACTGT-AAATGAATACGGCTAGAATCATTTTCCTTACTTATT----TTTTCTAATTTATAAGGACGAGACCCTAGACTATCTCTGACATGTTAATT-TGAGAACAGGAGTAGTCACAAAGAATGTTGAAAGTATTAATAACTCAGGGGAGCACAGAAAAGCTGCTTGGTGGTATCTGGGGATGTCGTTTCACCGAAAGCCTGCATGCGCTGTGGTAA-CGGTGTGAACTCTTCCAG Sorex_coronatus ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tursiops_truncatus GTAAAGGCCTCCGCCG-GGCGGGCGGTGCGGATCGGGTTTCAGCACCGGGACAGCTCCCTCTGGGTGTTGCCCGGGTAGGCCGGCCCACTTAGAAACAGGCCTCCGACGCCCTAACCCCGGCGGGCTCCCTGAGGGGCGGGGGTGCGCCTTGGGGAGCAGGGAGCATCAGTCTGAGGTG------------AATGCACTACCAGTCGTGAAATGCAACAAAAAAGCATCGCTTTCGGTATTTGGGCGGGAGGCCTTGTCTCCGGGGCCGTGGAGAGCGAGGCAGAGGGAAGCGCCTTCCTGCAACCATCGTCTAGGGTTCCTTCTTTTA----CTCTTGGTCGCATTCACTCTCTTCAAC-AGGCCTAGCCTATC--TGTTTCAGGTCCTTATACGGGAAGGACACATCGTAAGGTTTAGGACACCGAGAAAGTAGTAGTGATGAAGAGGGTGACTGTGGACTGAATATAGCCAGAATCCTTTTCATTACTTAATTAGCTTTTCTCACTTACAAGCGGAAGACGCTAGAATATATCTCACTTGTTAATTCCAGGAACAGGAATAGTTGAAAAGAATCTTGAAAATATTAATAACTCAGGGAAGCACAAAAGAACTGCTTGATGGTATCCAGGGATGTCATTTAATTAAAAGCCTCCACGCGTTGTGGTAACCAGTGTGAACTCTTCCAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23450] TITLE Neomys_JMJD_intron_2; LINK TAXA = TaxaForAnalysisStep14251; DIMENSIONS NCHAR=1038; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ailuropoda_melanoleuca GTGGGTGGTT---------------------CTACCCATTCCAGCGTCCCGGGGACTCCCCAGTTCCACCTCCCCCCAAGGAAATGCAGCCTTGCACACACGTCCCGACCGTCCGCGTGGATCGCTAGGCTTAGCCAGAGATTACAGGCAGTGCTCCAAGTTCAAGGCAGAGGTGGAAAGCTCCATACCTTCCACCGCTC-CCAGCTCCAAGCGGGTTCTAGTGAGTGCTCGCTTGGCGGTGTGGCGTGAAGTCTTGATGCCGTTTTGCATGATCTGAGGCATTCCATGGACCTTCCCAGGGGCCCGAGGCTTAAGAGCAGAAGTAAGAACCCGAGACGTGTCC-CCTCCCCTCCAGGCGGGGCTCCCTGAGCTTGCTCCCTCCTCACCTCT------------GCTCGGATGCGTGGTGGTGACCGCAGGTCAGGCCGCTGGGCGGTGGCCAGCAGGC--CAGAAAGGAGCAGGGGTCTCTGGATGGCAGATCAGGTCCCCGGTGGGTCGTGGAGGGAGTGGTTCCCGCCAAGGCGAAGGGTTCCGGCCGCAGGAAACGTTCTTTACTGCAGATCAGTGCCGTGTTTCCTGGTCCCATGGGACAGGTACTGTCATCACCCTGCTTACAAATGGGCA-------------------------------GAGGTCCCCAGC-CCATCACGGGCAGGGC-CAGGCCCCCGAGTTCAGCCAGC---------ACTCCATGCTGTCTGCTCTCGCTCCAA----------------GACAAGGTGAGCAGAGAGAGAGCCGGCCAGCGGGGCGATGGAACCGCCCTGCAGATACCTCAAACCAGCCTCACCGGGTCTCTCTGCAAGCGCCAGGGGCACGTCACCCCACGTGTCTGTGCCCGAGTGCGCTCCAGTGAAGGGGGCCAGTCTCTCCCCGTGGGGCTGTGTGGAGACGAGAGGAGGCCAGTGTG----------GCCAAGGGCCCAGCAGGTCTTAGCCAAAGTGACAATGGTGACCATGCATATCTGTCTCATAG Bos_taurus GTGGGTGTCTGCCGAGGGCTGCAGGGTTCTTCTTCCCAACTTAGCATCCCAAAGACTCCCAAATTCCTCCTTCCCCCAAGAGAACACAGCCTCATAGACGCTTAACTGCCGGTTGGACAGACTGCTGAGGGTAAACCTACATGGAAGGCAGTCCTCTGAAGCAGTGCCAGAGATTATAAGGTCCTTACCAGCTGCAGTCTGCTTGCCCTAAGCAGTTTTTCATGACTGCATCA-TGGCAGTCCAGTGTTAACTGTTTATGCCATTTTGCAGGATCTCAGGAATTCTGTGAACTTTCTCAGGGGTCCGAGGCTTGAAAGTAGAAATAAGAACCCAAG--ACAGCCCCACCCCCTCTCCGCGGG----CTTGGGTTTGCTGTCTCCTCATGGCTGCTTTGAGTCCCCCCCAGGTTCATGGTGGAGGCGTCAGATCAGGCAGCTGGATGGTGGCC---------TTGAAACGAGGAGGCGTGTCTGGCAGGT-GACGGAGCCAGCGTGGCTTTGTGGGAGTTATTGTTTTCCCTGA-----------------------------------------------------------------CGGGATGGGCACTGTCGTCACCTACTTTATAGACGAGGACAAGGGCTCAGAGAGGTGAAGAAACTTGCCATGGGCCCCCTGGTGGGTGACAGGCAGGGCCCTGGCCCCAGAGCTGAGCCAGGCACCTCACCACCCTGTACTGTCCACCATGGCCCAAAGGTCTCTCT-GCTTGTGACAAGGCATGC-GAGAGAGAAGTGGCCAGCTGGAAAATAGAGCTGCCCAGCAAG-------AACCAGATTCATCAGTTTTATCTGCAAGTGCCAGGGGCAAGTGACCTCAGCTCTTCGCACCTGCATCTCCTCCAGTGAAGTGGGGTCTCCCTCCACCTTGAGCTTTTGTGCCAATGAAAGGAGCCCAGCGTGAAGCACGTTTAGCAGGGGCCCAGCAGGTCTTAGCAT-AACGATGGCAATGCTGACCCCTGTCTTCCAAATAG Canis_familiaris GTGGGTGGCTCT--GAGTATGGGAGCTCCCTCTGCCTATTCCAGCCCCCCCGAGACTCTCCAATTCCGCCTCCCCCCAAGGAAATGCAGCCTCGAGCTCACTTCCCGACTGGTCGCGGGAACTGCCAAGGGTAACCAGGGATTGCAGGCAGTGCCCCAAGCTCGTGCCAGGGGTTGTAGGATCCGCACCTTCCACAGCTCACTTGCTCTAAACAG--------GTGTGCTCACCTGGCACTGTGGCATTAGGTCTTAATGCCATTTTTTGGGATTTGAGGGGTTCCATGTACTCGCCCAGGGGCCCGAGG-TCAAGAGCAGAAGTGAGAACCCAAGACACATCC-TATCCCCTCTCAGCGGGGCT-CCTGGGCTTGCTCCCTCCTCACCTCTGCTCCTGGTTCCCCTCAGATGCATGGTGATGAGAGCAGGTCAGGCCGCTGGACAGGGGCCATAATGC--GGGAGATGAGCAGGGGCCTCTAGACGGTTGATCAGGTCCCCGGTGGGGTGTGGAGGGAGTGCTTCCCGCTGAGGCGAAGAGTTCTGGCTGCCGGAAACGTTCTTTACTGCGGACCAGTGCCATGCTT-CTGATCCTAAGAGACAGGTACTGTCATCACCTTCTTTACAAATGGGGTCAAG------------------AACTTCCCAAAGGTCCCTGGG-----CAGGGCCAGGGC-CAGGCCCCCAAGTTCAGCCAGGCACTTCAGCACCCCGTGCTGTCTGCCGTTGCTCAAAGGTCTCTCAGCTCTGAGACAGGGTGAGCAGTGAGAACTGCGGCCAGCAGGGAGATAGAACCTCCCAGCAAGAACCTCAGA-TGGCCTCCCTGGGTCTCTCTGCAAGCACCGGGGGCACATCACCCCACATGTCCGTGCCC-AGTGCCGTGCAGCAGAGTGGGGCAGCCCTTCCCTGTGGGGTTGTGTGGGGACGAGAGGAGGCCAGTGTGAAGCACATGTGGC-GGGGCCCGGCAGGTCGCAGCAAAAGCGACCATGCTGACCATCCATTTTCGTCTCCTAG Crocidura_russula GTGGGTGGCTGT---GGGCTGGTGGCTCATATCGC--------------CATGTACTCCCCCATCTCCCCAGCC-----------------TGAGTGACA--------------AGGTAAGCCGGAAAGGGAGAGCAGGCACTG------------------------------------------------------------------------TACTAGTGCATGCCTGGTCAGCAGTTCCAC-----------------ACTGGCTGGATCCTAGAG--CCCATGGACTTTCTAATAAGCTAGGAGAATCAAAA----------TAAACCTGGCATAGCTGAGTGCCCCTATC---AGGCTATCTCTATTTGTTCCATCCT---GGCTGCTTCCAGTCCCTCTCAGACTATGGAGAGCAGAGGCAG-------------------------------------TGGGGAGATGTACCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGACAGGAGAAGAGCAGGCCAGCAGGAACCTACACACACAGTCAGTGGGTTTTTCTGCAAGCACCCAGGGTTGGTTGCTCTGCAAAGTGGTACCCGAGGGCCACACAGCCTAGGGGTGTGGATTCTAGCC---AGAGTCTCCAGAGAACACAGCAGACT-CCAGTAGGCCCATTGAATAGTG--TCCATGAATGTTAGCAAAGATGATGACAGTGATGAGACCTTTCCTCCTTCCAG Equus_caballus GTGGGTGGCTGCTGAGGGCGGTGGGGCTCCTCTTCCCACTTGAGCATCTCGAAGTCTCCCTGGATTCCTCCCC-CCCCAGTCAGTGCAGCCTCACGGGCACTGCACTGCCAGCCGGATGGATTGCCAGGGGTAAACAAGAATTGGAAGCTCTGCTCTGAATTTAGGCCAAAGGTTATCAGATTCCTCCCCTCTACAGTTTGCTTGCCCTAAGCACTGCTTAATGAGTGCTTAAGTGGCAGTGTCATGTTAGGCCTTGATGCAGTTTCGCAGGATCTTAGGAATTCTGTGGACTTTCTCAGGGGCCC--------------GAAATACGAACCCAAGGGACAGCTGCCTCCCCTCTCCGTGGGGCTCCTTGTGTTTGCTCCCTCCTCACATCTGCTTCTCGTCCTCCTCAGATTCGTGGTGGGGCCATCAGATCAGGCACCTGGCCAGTGGCCATAATGCTTTGGACACGAGAAGGCGTATCTGGAAGGT-------------GTAGTTCTGTGCAGGGAGTGGTCCCCGCTGACACGAGGAATTCCAATTGTAGGAAACATTCTTTGCTACGTACCAGTGACGCGTTTCCTGATCCCATGGGTCAGGCACTGTCATCACCCCCTTCACAAATGGCAACAAGGGCGCAGAGAGGTTAAGTAACTTGCTAAAGGTCCCCTGGTCTGTAGCATGCAGGGCCTGGACCCCAGAGTTCAGACAGGCACTTCATTACCCTGTACTGTTCACCATTGCTCCAAGGTTTTTGAGGTTAGTGACAAGGTGAGCAAAGAGAGAAGTGGCAAGCAGGGAACTAGAGCTGCCCAGCAAGAACTGCAAACCAGATTTTCTGGATCTATCTGCAAGCATCAGGGGTAAGTAACCTCACCTCTCTGTGCCTCAGTTTCCTCCAAGGCAGTGGGGCAGCAGACCGCCTCGTAAGGTTGTGACGATGGGAGGAAACCAGTGTAAAGCACATTTAGCAGAGGCCCAAGAAGGCTTACCAAAAATGATGAAAGTGACAATACCTGTTTTTCTGATAG Erinaceus_europaeus GTGGGTGGT--------GCAGAGGGGCCCCCCTCC-------GGCTT--------CTTCCCGTCTTCCCCTCCCCTCAGCGAGTCAGGCTAACTGAGACACTTCCCAGCCACCCGCGTGAAGGACCCCAGG---------------------GCTCTGAATTTCTGCCAGA-----------------CGGTCCTGCCTCCCCAGCCCTGAGCTGTGTGTAATGGAGGCTCCC---GCGCTCTGGTGTGACGTCT----ACAGTTGTGTGGGG-CTCGGGGACTCTGTGGACCTAGTGGGGAATCCGAGACCTAAGATGGAAAGAAGGACACACACACACACACACACCACACAGCCCTGAGACTC-----------TTTCTCCTCACATCTGCATCAGCC---CCTCAGAGTCTCCATAGGGAGAGCAGATTGGGCACCACACCAGCGTGTG------TCTCAGAGCGAGGAGGTTGCTGGACAGCCCGGCTCCAGTC---------------------CCGGCCCCACCGAGGCGAGGATTCCCTGTCATCAGAGACCATCTTTGCTCGGTGTCGGTGGCATGTCTCCTGATCCCAGGGCGCAGGTGCTGTCACCTTCCCCTTTACAAAGATGAGCAAGGGCCCAGAGAGGTGATGTGACATGCCCAGGGTCCCCTGGAATGTAACCGTCGGGCCCCACCCCCCCCAGTGCAGTTAGCCCTCCATCCGCCCTGTACTGTCAGCCTTGGCACAAA-GTTCTCCCGGCCAACGACGGGGCCTGAGGGAAGTGGGACATCGCAGAGGGAGAGACAGGGCCCCTGCACAACCTTCAAACCAGCCCCACTGGCTCCCC-------------GGGCAAGTGACCGCACCTCCCCGTGTCTGCGTTTCCCACAGCTCAGTCGGGCGGTCTCTCCCTCAAAGGTCTCG----------GGGAGGCCA------AGTGCTTTCAGCAGCGACCCAGCCCGCGTTCACAGCGTGGAGCGTGACGGCAGTGCCCGTCTCTCCCGCAG Felis_catus GTGGGTGGCTGT-GAGGCCCGGGAGCCTCCTCGGCCCATTTCAGGAC------------CGGCTTCCACCTCTCCCCCGGGAAATGCAGCCTCGCACACGCTTCCCGACCGGTCGCGTGGGCTGCTGAGGTAAACAAGAT--------CGCTGCTCCAAGTTCACGCCGGAGGTCGTAAGATCCGTGGCGTCCTCAGCTCACTTGCGCCAAGCAGGTTGTAGCGAGTGCTGGCGTGGCGGTGCCGCGTTAAGTCTTCGTGGCATTTTGCAGGAGCTGAGCCATCCCGTGGGCCTTCTCGGGGGCCTGCGGCTTCAGAGCAGAAGCAAGAGCCTAAGACACGTCC-CCTTCTCTCTCGGCGGGGCT-CTTGGGCTCGTTCCCTCCTCACATCTGCATCTGGTCTCCCCCGGATTCATGGTTGTAAGAGCGGCTCAGGCTGCTGGACAGTGGCCGTAATGCTATGGGAAGGAGCAGGGGTCTGTGGACGGGTGGCCGGGTCACCGGGGGTCCGTGGAGGGGGCGGTTCCCGCCGAGGCGAGGAGCTCT-GCTGCAGG--------TTTACCGGAT-----TGCCAGGTTTCCTGGTCCCGTGGGACAGGTACTGTCATCGCCCCCTTTACAAATGGGGGCAAGGGCTTAGAGAGGTTAAGTAACGTGCCAGAGGTCC-----------------------------TTGGCGTTCAGGCAGGCCTGTCTG----CTGCACTCTGTGCCATGGCTCCAAGGTTTCCCAGCTTAGAGAGGAGGTGAGCAGAGAGAGAACTGGCCAGCAGGGAGATAGAACCTCCCAGCAAGAGCCTCAGGCCAGCCCCACTGGATCTCTCTGCAAGTGCCAGGGGCACGTAACCCCATGTGTCTGCACCCGAGCGCCCTCCAGTGCGGTGGGGCAGCCTGTCCCCCAGAGGTTCCGGGAAGACAAAAGGAGACCTGTGTGAAGCACACTTAGCGGAGGCCCGGCGAGGCTCAGCGT-GCAGGTGATGGTGACCTTACGCGTCTGTCTCCCAG Homo_sapiens GTGGGTGGTCGCTGAGGGAGGTGAGGTCCCTTTTCCCATTTTAGCGTCCCCAGGGCTCCCTGAATTCCTCCCGACCCAGGGAAATGCAACCTTGTAGATGCTTCACTAGCAGCCTGACTGATTGCCAAGGGTAAAAAAGAGTGAAAAGAGGTGCTCTGAATTTATGCCGCAGGTTATGGGATTCTTACCTTCTAC--CTTGCTCGCCTTAAGCGGTTTTTAATGAGTCCCTAAGTGGCAGTCCTAGAATGTTTCTTTATGCAATTTTACAGGATCCTAGCAATTTCA--GACCATCTCAGGGCCCT--AAGCTAAGAGCAGAAAT---AACCCAAGAGACAGCC--CCTCTCTCTCTGAGGGATTC--------------TCTCTTGTGTTTGTTTCTAGTCCTTCTCAGAATCATGATGGGGAGATCAGATCAGGCAGCTGGAGCGTGGCTGTCATGCTTTGGAAATAAGGAGGCATCTCTGGAAGGTAGATGGAGTCCGCGTGGTTTCGCGGAGGGAATGGTACCCGCTGACACGAGGAATTCTCATTGCAGGAAGGCTTCTTTACTACGTACCTG--------------------TAGGACAGGTGTTGTCATCACCCCCTCTGTAAATGGGGACAAGGACTC----GGGTTCAGTAACCTGCCTCAGATCCCCTGGCCTGTAACTGATGAGGCCCAGG--CTAGAGGGCAGCCAGGC-------CACCCCACGCTGTCCGCTATTGTTCAAAGGTTTCTCAGCTTAGTGACAAAATGAGCAAAGAAAGAAGTGGCAAGCAGGGAACTAGAGCAGCCCAG---------CCAACCAGACTTACCGGCCCTGTCTGCAAGCACTGTGAGCAGGGAGCCCCACCTCTCCATGCC---GGTTCCTCCAGTGAAGCTGGGCAGTCCTTGTCTCTGAGGTTTTCCGAGGATGAAAGGGGACCAATGCAAAGCACACTTAGTACTAGCCCAACAGATATTAGCAG------TGACGATGCCAATGTGTGTCTTTCTGCTAG Macaca_mulatta GTGGGTGGTCACTGAGGGAGGTGAGGTCCCTCTTCCCATTTTAGCGTCCCCGGGGCTCCCTGAATTCCTCCCCTCCCAGAGGAATGCAGCCTTGTAGATGCTTCACTAGCAGCCTGACTGATCGCCAAGGGTAAAAAAGAATGAAAAGAGGTGCTCTGAATTTATACCGCAGGTGATGGGATTCTTACCTTCTAC--CTTCCTCGCCCTAAGCGGTTTTTAATGAGTCCCTAAGTGGCAGTCCTAGGATGTGTCTTTATGCAGTTTTGCAGGATCCCAGCAATTTCA--GCCCATCTCAGGGCCCT--AGGCTAAGCACAGAAAT---AACCCAAGAGACAGCC--CCCCTCTCTCTGAGGGATTC--------------TCTCTTGTGTTTGTTTCTAGTCTTTGTCAGATTCCTGATGGAGAGATCAGATCAGGCAGCGGGAGCGTGGCTGTCACGCTTTGGAAATAAGGAGGCATCTCTGGAAGGTAGATGGAGTCGGCGTGGTTTAGCGGAGCGAATGGTACCCGCTGAGACGAGGACTTC-CATTGCAGGAAGCCTTCTTTACTGTGTACCTG--------------------TAGGACAGGTGTTGTCATCACCCCCTCTGTAAATGGGGACAAGGACTCAGAGAGGTTCAGTAACCT-CCACAGATCCCCTGGCCTGTACCTGATGAGGCCCAGG--CTAGAGGGCAGCCAGGCCCTTCAGCACCCTGCGCTGCCCACTATTGTTCAAAGGCTTCTCAGCTGAGTGACAAAATGAGCAAAGAAGGAAGTGGCAAGCAGGGAACCAGAGCAGCCCAG---------CCACCCAGACTTACCGGCCCTATCTGCAGGCACTGCGAGCAG---GCCCCGCCTCTCCGTGCCC--CTTTCCTCCAGTGAAGCTGGGCAGTCCTCGTCTCTGAGATTTTCCGAGGATGAAAGGGGACCAATGCAAAGCACACTTAGTACTAGCCCAAAAAATATTAGCAG------TGATGACGCCAATGTGTGTCTTTCTGCTAG Myotis_lucifugus GTGGGTGGCTGCTGAGGGCCAGAGGTTCTCCCTCC---TTTCAGCAT--CCCAGACTCCCTGCACTCCTCCCC-CTCTAAGTAGCACAGCCCC-TGGACATGTCACTACCAGGCGAGTGGGTGGCTGAGGGTAAACAAGAACTGACAGCAGAGCTCTGGATCTTCGCCAGA---TCTAAGACTCTCACCCTCCC--ACTTGCTTGCCCGAAGCCGTTTTTAATTCGGGCTTCA---GCAGTCCAGGGTTAAGTCTTTACGCAGTTTTGTAGGATCTTGGGAATTTTGTGCACTTCCTCGAGGGCCCGAGGTTTCAGAGTAGAAATAAGGGCCCCAGAAACAGCCTGTCCCCTTCTCT---GGGCACCTTGTGTTTGCTTCCTCCTCACACCTGCCTGTAGTCCCCCTCAGGCTCAGGCTCAGG-----GAGACAGGCAGCTGGAAAGGGGCCGTATCACTTTGGAAATGAGGAGG-GTCTCTGGAAGGGTGAGCGAGTCAGCGTAGCCTTGTGGAGGAAGTGGCTCCCACTGAGACGAGGAGCTCTGACTGCAGCAAGCATGCTTTGCTGTGTGCCAGTGCCATGTTTCCTGGTCCTGTGGGACAGGCACAGTCGTCACCACCTTTGC-AGTGATGACAGAGGCTCAGTGAGGTTAGGTAACTTGCT--AGATCCCCAGGTCTATTGCGGCAGGGTTCCAGGCCCCAGGGTTGAGCCAGGCACTTCTCCACGCTGTACTGCTGGCCA----------TTTACTCAGCTGCGTGACAAGGCGTGCAGAGAGAAGGCTGGCAAGCTGTAGCAGAG---CAGCCAGGGAGAACTGCAAATGAGGTTTATTGGATCTGTCTGCAAGCGCCAGGGGCGG--AGCCTCACCTCTGTGGGTTCTAGTCCAGTGCAGTGCAATGGGGCAGCTTCCACCTC--ACAAGTGGTGATGCTGAGAGGAGACCAGTGTCCAGCGTGCTGAGCAGAGGCCCTGCACGCGCGAGCAA------TAGTGATGAAGTGACGTGTTTTTCTGACAG Neomys_fodiens GTGGGTGGCTGCCATGGCCCCTGGGACTA---------------------------------------------------GGGGTGGGGCT-----------------------GAGTGA---GCAGAGGG-----------------------------------------------------------------GCTCCACTGCGGTCAGCGGCATCTCAAGGGAGCCCCATCC----------G---------CCTCCACCCTGGCAGAACCCTAGGGTGCCTGC-AGCCTTTTCAGAAGCTAGGGGCATCACGA----------TAACCCAGGT-CAGCCGAGTGACCCTCGA------------------GTGTCTCTCGCATGCCCCTCACGACTCCTCATCAGACT-----------------------------------------------------------------------------------------------------------TGACTCCCATCCCCAG----------------------------------------------------CCTAGTAGCACAGAGCAGGTGCTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGGGGAGGGCGAGCTGGCCAGCAGGAACCTGGGCATCCAGATGCAGTGTC----------------GGGCCTTGGAGCCCATCTCTCCGGGCGTG---------CAGGGCTGTCGGG------------C---------------------------------------------------------CAGATCTTGGCAGAGATG-GCACGGTGACGAGACC---TTCCCTCCCAG Pteropus_vampyrus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Sorex_coronatus GTGGGCGACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCTCCC--------------------TCCCCAGCCACGCCTGGCTCACGGCTGCCTGT-GACGTTCCCGGGGTCAGGA-------------------------CAGAC-CGTGTGTGTG---------------TGTCTGGCGTGGCTCCCTCCCCGTGGCTCCCTCGGACCCCCTGCAGACTTGGGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCACGGAGCAGGAGCTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCTGAGGCGGGAGCTTCCCACGCAGAGCTTGGGGGTGTGGACATAGAGAC---------------------------------------------------------------------------------------------------------------------CCCGTTGGGCCGCA--CCCACAGA--CCAGGGGTCGAGCTGCCGGCGACGAGACCTTTCCTTCCCCCAG Tursiops_truncatus GTGGGTGTCTGCTGAGGGCGGTGTGGTTCCTCTTCCCAATTTAGCATCCCAGAGACCCCCAAATTCCTCCTCCCCCCAGGTGAATACAGCCCCACAGACACTTCACTGGCAGTGAGATGGATGGCCGAGGGTAAACAGGCATTAAAGGCAGTGCTCTGAAGCGATGCCAGAGGTTGTAAGATTCTTAGCTTCTACAGCTTGCCGGCCCTAAGCAGTTTTTAAGGAGTGCATCA-TGGAAGTCCAATGTTAAGTCCTTATGCAGTTTTGCAGGATCTCAGGAATTCTGTGGAGTTTCTTAGGGGTTCGAGCCTTGAGAGTAGAAATAAGAACCCAAG--ACAGCCCCACCCCCTCTGCGTGGG-CTCCCTGTGTTTATTCTCTCCTCATGTCTGTTTCCAGTCCCCCTCAGATTCATGGTGGCGAGGTCAGATCAGGCAGCTGGACAGTAGCC-------TTTTGAAATGAGGAGGCGTGTCTGGCAGGTGGATGGAGCCAGGGTGGTTTTGCGGAGGGAGTGGTTCCCGCTGACAC---------------------------TTGACCACG------TGCCATGTCTCCTGGTCCTGTGCGACGGGCACTGTCATTACCCACTTTGCAAACGGGGACAAGGGCTCAGAGAGGTGAAGGGACTTGCCACAGGTCCCCTGGTGGGTGACAGGCAGGGCCCAGGCCCCGGAGGTGAGCCAGGCCCCTCACCACCCCGCACTGTCCTCCATGGCCCGAAGATCTCT---GCTTGTGACAGGGCGAGCAAAGAGCGAAGTGGCAAGCAGGGAAATAGAGCTGCCCAGCAAG-------AACCAGATTCATTGGTTGTATCTGCAAGCGCCAGGGGCAGGTGACCTCGCCTCTTTGCACCTGTGTCTCCTCCAGTGAATTGGG-TCTTCCTCCACCTCG----TTTGTGCCAATGAAAGGAGACCAGCGT--AGCACATTTAGCAGGGACCCAATGGGTGTTAGCAT--ACGATGGCGATGCCAATCCCTGTTTTCCAAATAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23452] TITLE Neomys_MYCBPAP_intron_11; LINK TAXA = TaxaForAnalysisStep14251; DIMENSIONS NCHAR=472; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ailuropoda_melanoleuca GTACCT------GGCTGCCCTGCTCCCTGCCTCCTGTCGAGGAGCCAAAGTTTGGCCAAT-----GCTCCTGCAAGGTTGAGCCGCTGTCCCCTGCCTCATCCCTCCCATTTC----------TGTGTCTGCTCTGAACTGTTCATGTCTGTTGGGGGGACGGTCAAACTCTTGAGAACACAGGGAGGCGAGTCAGGGAGCAGAAACTTTCT-GGGATTCAGTTACCTATATGCTCAGGCGTGAGGCTAGGATGACCCCCTCCCTGTTTGCCTGGAACTTCCCAGTTTTT--------GTCCCACATCCCAGGAGACCCCTCAGTTCTGGGCAAACTGGGATGTCGGTCACTCTGCCTGGGGCTCAGTTAACTGTATATGCCTAGGCTTAGGGCTCAGTTAACCCTATACATGCAGGCTTGTGGCCCAGCTAGCTCCTGTGTGGTGAAAACCTCTGTCTCGGTCCCTCTCAG Bos_taurus GTACCAGGGGGAAGCTGCCC-ACTCACC----------CTACAGCCCAAGTCTCGCTCATGCCCAGGCCCTGCAAGCATGAGCCCCTCTTCCCA--CCTGTCCACCCCATGTCTTCCATGAAGTGTGCCGTCTC----CTGTTCCCATCAGCTGGGGGAATGGCAGAA------------CGCAGGAGTGAGCCAGGGGCAGAAA--------------CAGTTGCCCATATACCTGGGCCTGAGGCTAG-----------------------------------------------AGTCCCACATCCCAAGAACGCCCTCAGGTCTTCACAAGCCGGGACGCTGGTCACCCTAACCAAGGCTTAGTTAA-------------------------------CTTTCTACCCACAGGCTTGGGGCTCAGCA-GCTCCCACCTGGTGAAAACCTCTGTCTCTGTCCCTCTCAG Canis_familiaris GTACCT------AGCTGCACTGCTCCCTGGCTTTTGCCGAGGAGCCAGAGTTTGGCTGAT-----GCTCCTGAAAGTTTGAGCCCCCCTCCCTGGCCTCATCCCTCCCATTTCTTCCATGAATTGTGTCCTCTCCCAACTGTCCATGTCTTTTGGTGGAACGGTCATACTCTTGAGATCACAGAGAGGAGAGTCAGGGAGCAGAAACTTTCTAGAGGTTCAGTTACCTATATGCTCAGACCTGAGGCTAGGA--ACCCTCTCCCTGTTTGCCTGAGACTTCCCCAGTTTTTGCACAAAGTCCTACGTCCCAGGAGACCCCTTGGTTCTGGGCAAATCGGGATGTCGGTCACTCTGCCTGGGGCTCAGTTAACTGTGTATGCAAAGGTTTAGGGTTCAGTTAACTTTATACACACAGGCTTAAGGCCCAGCTGACTCCTGTGTGGTGAAAACCTCTGTCTTGGTCCCTCTCAG Crocidura_russula GTACCC---ATGTATTGACTTAGTCTTGGTGTCCAGTCGGAGGTCCACAGTCCAGTAACTACCTGTCCCCCAGGAGCTGGAGCACCTCTCCCCAATCCTGCTCA-CCCCCTGCTTCTGTGAAGTGTGT----------CTGTCCATGTCTGGGGCAAGGGGCAGGCAACTCATGAAAACACAGGAAGATGAG-CCAGGAGTAGGG------------------TATTTCAGGGCTCAGCTATGAAGC----ACAACTGTTTTCCTGTTTGTCTGGAACTATCCTAGGTTTATCTCAAAGT--------CCAGGAAAGCCC--AGTTTTG--AAAATTTGAACTGTGGTCATTTTCCTTAGGGCTCAGTTGACTGTATACACA---GGCTTGGGCTCAGTTAATTATGTACT----GGTTTGGGGCTCAGTTAACTCCTGCCAGTTGAAAACCTCCATCTCTGTCCCTCTCAG Equus_caballus GTACCTAGGAGAAGCTGCCCTGCACACCCGCTCCTGCCGAGAAGCCATAGTCCAGCTAATGCCCAGCTCCTGCAAGTTTGAGCCCCTCTTCCCCACCTCATCCTTCCCATTTCTATGCTGAAGTGTGTCATCTCCTACCTGTTCATGTCTGTTGG-GGAACGGTTGAACTCTTAAGAAGACAGGGAGGTGAGCCAGGGAGCA------TTCTCGGGGTTCAGGGACCTATATGCACAGGCCTGAGGGTAGGATGACCAGCTCCCTGTTTGCCTGGGACTTTCCCAGTTTTAGCACATAGTCCCACATCCCTGGAAACCCCTCAGTCCTGGGAAAACCGGAACGTTGGTCACCCTATCTGGGGCTCAGTTACATGTGTCTGCATAAGCTTAGGGCTCAGTTAACTTTATATGTGCAGGCTTGGGGCTCAGCTAGCTCCTGCTTTGTGAAAACTGCTGTCTCTGTCCCTCTCAG Erinaceus_europaeus GTACCC---------------ACTCACCATCTCCTGTCGAGAAACCAAGATCGAGCTAATACCCAGTTCCTGCACACTTGGACCCCTCTTCCCCATCTTGCTGCCTCTATTTCTTCTGTGAAGCATTTCA---TCTAGCTGTTCATGTCTGATCGGGAGAACAGTGACCTCTTCATAACACGGGGAGATGAGCCAGGGAGCAGAGGCATTCTAGGGGTTCACTTACTTATGTGCACAGAGCTG-GGCTAGAATGCAGAG-GCCATGTTTGTGTAGAACTTTCTGAGTCCTAGCACATAGTCCTGCATCCCGGGAAACGCC--AGGTTTG----ACCTTGTATGGCAGCCACCCTACCTGGAGCTCAGTTAAGTACATGTACATAGGCTTGGTGCTCAGTTAACTTTATATATGCAGACTTAGGGCACATCT-GTTCCTGTGTGTTAAAAATCTCTGTCTCTGTCCCTCTCAG Felis_catus GTACCC------AGCTGCCCTACTCCCGGGCTCCTGTCGAGGAGCCAAAGTTTAGCTGA-----AGTGCCTGCAAGTTTGAACCCCTCTCCCCTGCCTCCTCTCGTCCATTTCTTCTGTGAATTGTGTCCTCTCCTAACTGTGCATGTCTGTTGGGGAAACAGCCGAACTC--GAGAACACAGAGAGTCTCGCCAGGGAGCAGAAACTTTCTAGCGGTTCAGTTACCCATACGCTCAGGCCTGAGGCTGGGATGAACCCCTCCCCGTTTGCCTGGGACCTTGCCAGTTTTTGCGCAAAGTCCCACTTCCCAGGAAACCCCTCGGTTCTG-------------GTCACCACCCTGGCCCGGGGCCCAGTTAACTGTA--TGCAGGGGCTTAGGGCTCAGTGAATATTG----TGCAGGCTTGGGGCTCAGCTAGCTCCCTTGTGGTGAAAACCTCCGTCTCTGTCCCTGGCAG Homo_sapiens GTACTCGGGAGAAGCCACCCTATGTGCTAGCTCCTGTCGAGACATCAAAGTTTAGTTATGGCCCAGCTCCTGTAAGTTTGAGCCCTGCTTCCCTGCCTTGTCCCTCTCATTCCTTCTGTGAAATGTGTGG---CCTGACTACTCATGTCTGTTGAGAGACTGATGGAA--CTTGAGAACCTGGGGAGGTGAGCCAGGGAGCAGAAGCGTTCTAGGGGCTCAGTTATCTAGGTGCACAGGCCTGGGGCTAGGATGGCCAGCTCTCTGTTTGCCTGGGAC---------TTTAGCACAAATTCCCACATTCCAGGAAACCTCTCAGCCCTGGGCAAACTGGGATGCCAGCCACCTGGCCTGGGACTCAGTTAACTGCATGTAGG-------------------------AGCATGTAGGCCTGGGGCTCAGCCAGCTCCTGCATGTTGAAAACCTCGGTCTCTGTCCCTCTCAG Macaca_mulatta GTACTTGGGAGAAGCCACCCTACACGCTGGCTCCTGTCGAGACATCAAAATTTAGTTATGACCCAGCTCCTGTAAGTTTGAG------------------TCCCTCTCATTCCTTCCGTAAAATGTGTGG---CCTGACTATTCATGTCTGTTGAGAGACTGACGGAA--CTTGAGAACCCGGGGACGTGAGCCTGGGAGCAGAAACGTTCTAGGGGCTCAGTTATCTAGATGCACAGGCCTGGAGCTAGGGTGGCCAGCTCTCTGTTTGCCTGGGAC---------TTTAGCACAAAATCCCCCTTTCCAGGAAACCTCTCAGCCCTGGGCAAACTGGGATGCCAGTCACCTGGCCTGGGGCTCAGTTAACTGCATGTAGC-------------------------AGCATACAGGTCTGGGGCTCAGCCAGCTCCTGCATGTTGAAAACCTCAGTCTCTGTCCCTCTCAG Myotis_lucifugus GTACCTAGGAGGCACGGCCCCACCCACC---------------------------CAGAAGCGGACGTCTGGCGAGTTCAAGCCCCTCTTCCCTGCCTCCTCCCTTCAATTTCCTCCGTGATGCGTGTTATCTCCCAGCTGTTCATGTCTGTTGGGGG----------------------CAGGGAGGTGAGCGGGGGAGGGGGAGCATTCTAGGGGTTCAGGTACAT---TGCACAGACCCGAGGCTGGGAGGACCAGCGGCCTGTTT---CGGGGGCTTTCCCGTTTCAGCATAAAGTCCCCCAACCCAGGAAAGCCCTCCTCCCCGGGCAAAGCCGGACGTGGGTCACCCTGCCTGGGGCTCAGTTACACGTATCACCAGAGGCTTAGGGCCTAGCCACCTGCAGACACGCGGGCGTGGGGCTCAGAGAGCCCCTTCTCGGGGCACACCTCTGTCTCTGCCCCC-TCAG Neomys_fodiens GTACCCG--------------------------------------------------------C{AG}CACCCGCTCAGCCACCGTCCCTGTTCCCCGCCTTGCCTTGCCCACTGCTGCTCTGAAGTGTGT----------CTATCCATGTCTG-----GGTGCAGGGAAACTCCTGAGATCACAGCAAGGTGAA-CAGGGAGCAGGAGCATTCTAGGGGTTCAGCTGCTTCTACGCCTC-------TGCCAGGGTACCCAGATTCCTGTT----TGGAACGATCCCAGTTTTAGTTCAAAGTCCGACAGGCCTGGGAACCCC--AGTCCCG-GAAAACCCGGACCGTGG-------GCCTGGGGCTCCCTTAAGTGT----------TGCCAGGCCTCAGCTGGCTTCTGCCA----GAACCCTGGCTCTG----------------------------------GCCTCTCAG Pteropus_vampyrus GTACCTGGCAGAAGTGGCATTGCTCACA-GCTCTCGTCGAGAAGCCA-TGTCTAGCTAATGGCCAGCTCC-----------ACTTCCCTGCCTCGTTCCCCATCCACAGTTTCTTCTGTGGCATGTGTCATCGCCCAACTATTCATGTCTGTTGGCGGAAGGGTGGAACTCTTTAGAATACAGATAGGTGAGCCAGGGAGCAGAGGCATTCTAGGGGTTCAGTTACCTATAGGCACAGGCCTGAGGCTAAGACAACCAACTCCCTGTTTGCCTGGGACTTTCCTAGTTTTAGCACTAAGTCTCACATCCTA-AAAACACCTTAGTCCTGGACGAACCAGAGCATTGGTTACCTTACCTGGGGCTCGGTTAAATGTAACTGCATGGGCTTAGGGCTCAGTTAACTTTAGACATGCAGGTTTGGGGCTCGGCCAGCTTCTCTTTATTGAAAACCTCCATCTCTATCCCTCTCAG Sorex_coronatus GTACAC--------------------------------GGGAA--------------------GGCACCGGCTCTGTCACAGCCCCTCGTCCCCGCCTTGTCTCTGTCCCTGCTTCTCTGACGTGTGT----------CTGTCCATGTCTAGGGGCGGGAGGGGGGAAAACTCAAGAT--CAAGGAGGTGAG-CAGGGAGCAGAAGCTGTCTAGGGGTTCAGCTGCTCCTATGCCTC-------TGCTAGGGTGCCCAGCTTCCTGTTTGTCTGGAACTATCGCATCCTTAGCTCAAAGTCTGAGAGGCCAGGGAACCCC--AGTCCCG-GAAAACCTGAACCATGGTCATCCTCCCTGGGGCTCAGTTAACGCTGTATATGTGGGCTCGGGGCTTAGTTAAGTGTGCATT----GGACTCGGATTCAGTTAACTCCCGCCCGTTG-AAACCTCTGTCTCTG-GCCTCTCAG Tursiops_truncatus GTACCAGGGAGAAGCCGCCCCGCTCACC----------CTGCAGCCAAAGTCTAGCTGATGCCCAGCTCTTGCAAGTGTGAGCCCCTCTTCCCG--CCTGTCCCTCCCA----TCCTGTGAAGTGTGTTGTCGCCTGACTGTTCCTGTCAGCTGGGGGAACGGTGGAACGCTTGAGAACACAGGGGAGTGAGCCGGGGAGCGGAAACATTCTAGATGTTCAGTTACCCATATGCACAGGCCTGAGGCTGGGACGACCACCTCCCT-CTTGCCTGGGACATTCCCGGTTTTCGCAAAAAGTCCCACATCCCAGGAAAGCCCTCAGTCCTACGCAAGCTGGGACGTTGGTCACCCTAACCAGGGCGTAGTTAA-------------------------------CTTTATACATGCAGGCTTGGGGCTCAGT--GCTCCTACTCGGTGAAAACCTCTTTCTCTGTCCCTCTCAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23451] TITLE Neomys_MCM3_intron_2; LINK TAXA = TaxaForAnalysisStep14251; DIMENSIONS NCHAR=419; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ailuropoda_melanoleuca GTAAGTGGTAAGGGTTCCCAAGAGGATATCCTGGCTCTGAGTGACAATGGCTCCCCTTTCTCTTCCCCCGATTGGAACAGGCTTCCTAGGAGAGGATCTGGATGAAATGTTTTGACC--------CTCATTGCCTCACTTCTGTGTTTTTTTCTTCTTCCCAAAGTAGGTGGTGGGCATTTTCCT-TTAAGAGCTCCTCCTTCCATGTTTAACTGAGTACCATTTTTGCATCTTTGAGAAGTTGAATTCAAATTAGCTGTCAGTTCTGATGTATTTTACTGAGTCTTCTAGGACAGCAGGAGAAAGCAGGCACTAGATTTTC--------------------------CTTTTATTTTTGAGGGTCAATTTTTTCGAGTTTTTCTCTGCCTAATTATTCTCTCTCTTGCCCATTTACAG Bos_taurus GTGAG---------TTTCCAAGAGGCATCCCTAGTTCTGAGTGAGAATGGCTCCTCTCTCTTCC---CAGGTTGGAGCAAGCTTCCCAGGGGAGGACATGGATGAAATATTTTGACCAGGAAGCCCTTAGTACATCACCTCTATGTTTTTTACTTCTTCTCAAAGTAGATGGTGGGCATTTTCCT-----------CTCTTTCTATGTTCA-CTGAGTATCATTTCCCCATC--------ACTGAGTTAAAACTGGCCTGCAGCTCTGATGTGTTTTACTGGGGCTTGTAGAATGGCAGGAGAAAGCAGAATCTAGATTTTCACTCCTAAGCTTTGATCAAATAAGAAACTTCTGTTTTGTGGGTCAAGTTTTTTGAATTCTTCTCTGCCTGATGATTCTCTGC-------------AG Canis_familiaris GTAAGTGGCAGGGCTTTCCAAGAGGATACCCTGGCTCTGAGTGATAGTGGCTCCCTTTCTCTTCCCCTTGATTGGAACAGGCTTCCCAGGAGAGGACCTGGATGAAATGTTTTGATC--------CTTGTTGCCTCACCTTTTTTTTTTTTTCTTCTTCCCAAAGTAGGTGGTGGGTGTTTTCCTCTCAACAGCTCCGCCTTCCATGTTTAACTGAGTATCGTTTCTGCATCTTTGAGAAGTTGAATTAAAGTTAACTGTCAGTTCTGATGTATTTTCCCAAGTCTTCTAGAACGGCAGGAGAAACTAGGAACTAGATTTTC--------------------------CTTTTGGTTTTGACGGTCAATTTTTTGAAATTTTTCTCTGCCTAATTATTCTCTCTCTTGCCGATGTGCAG Crocidura_russula GTGAGTGGCAAGGGTTTTCAGGGGGATATTTAGACTCTAAATGAGTATGGCTCCTCTCCCC------CAGATTGGAACTGGCTTCCCAGGAGAGCATTTGGTTGGAGCATGTTCACCTAGAAGCCCTCATTGCCTTACCCTCAGTTTTTTTCCTTCTTTCAGAAGTATGTGGTGAACACTTTCCTCCCAAGAGCACTTTCTTTTTTGTTTAGCATAGTAGCATTTATACATCTTTGATAGGATGGATTAAAGTTAGCTC-CAGTTCTGATGCATTGTAC-----------TGATGGCATTAGGAACTAGGACCTGAGTTTTTCTTTTTTGCCTCTGATTGTCTAAGAAACATTTTTGGGGAA---------------------TTCTGTCTAATTACTTTTTTT---ATTCCTTTGTAG Equus_caballus GTGAGTGGCAAGGGTTTCCAAGGGGATGTCCTGGCTCTGGGTGAGAATGGCTCCCCTCTCTCTCCCCCAGATTGGAACGGGCTTCCCTGGAGAGGACCTGGATGAGATATTTTGACCTAGAAGCACTCTTTGCCTCACCCCTATGTTTTTATCTTCTTCCAAAAGTAGGTGGTGGGCGTTCTCCTCTCAAGAGCTCCTCCTTCCGTGTTTACCTGAGTATCAGTTCTACATCTTTGATAAGTTGAATTCAAGTTGGCCCTTGGTTCTGAGGTGGTTCACTGAGCCTGGGAGGATGGCAGGGGCAGGTAGGAGCTGGATTTTCACTCCTTGGCCTTCCTCATCTAAGAAACTTCTGTTCTGAGGGTCAGTTCTTTTGAGCTCTTTTCTGCCTAATTACTCTTTCTCTTGCCCATATTTAG Erinaceus_europaeus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTTCAAGAGCACTGTTTTCTATGTATTGCTAAGTATCATTTTTGTATTTCTGATAAGTTAGATTAAAGTTGTCCGTCAGTTCTGGTGTGTATTAC-----------GGATGTTAGGACAAAGTGGTACTTTTGGTTTTATTTCTTGGTCTTATTCATGTAAGGAATTTTTGTATTGAGGTATA---TTTTAAAGTTCTTTTCTGTCTAATTTTTTTTCTTCTTACCTATAAACAG Felis_catus ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Homo_sapiens GTGAGAGG----------CAAGGGGATATACTGGCTGTCAGTGAGAATGGCTCCCTTCCCTCTTGGCCAGATTGGAACA-GCCTCTCAGGAGAGGACTTGTATGAAACAGATTGATCTACAAGCCCTCGTAG-CTCACCTTTTTTTTTTTTTTTTTTTCAAAAAGTGGGTGGTTGGCATTTTCCTCCCAAATGCCCCTCCTTCCATGTTTAGCTGAATATCATTTTTATATCTTTGATAAGTTGAGGTGAAGTTGGTCCTTAGTTCTG--GTATTTTACTGAGTCTTATAGGATGGTAGGAGAAAGCAGAAGCTGGATTTTC--TCATTGTTTTTAATGATCTAAGAATCTGCTGTTTTGAGGATCCATTTTTTTGAGTTCTGCCCAGTCTAATTTTTCTTTCTCTTGCTTATGTACAG Macaca_mulatta GTGAGTGG----------CAAGGAGATACACTTGCTCTCAATGAGAATGGCTCCCTTCCCTCTTGGCCAGATTGAAACA-GCCTCTCAGGAGAGGACTTGTATGAAATAGATTGATCTAGAAGTCCTCATAG-CTCACCTTATTATTTTTATTTTTTCCGAAAAGTAGGTGGTTGGCATTTTCCTCCCAAATGCTCCTCCTTCCATGTTTAGCTGAATATGATTTTTATATCTTTGATAAGTTGAATTAAAGTTGGTCCTTAGTTCTG--GTATTTTACTGAGTCTTATAGGATGGCAGGAGAAAGCAGAAGCTGGATTTTC--TCATTGTTTTTAATGATCCATTCACCTGCTGTTTTGAGGATCCATTGTTTTGAATTCCTCCCTGTCTAATTTTTCTTTCTCCTGCCCGTGTACAG Myotis_lucifugus GTGAGTGGCAAGTGTTTCCAAGGGGATACCCTGGCTCTGGGTGAGAATGGCTCCCTTCTCTCTTCCCCACATTGGAACTGGCTTCCCAAGAGAGGACCTGGGTGAAATATTTTTACCTTGAAGCCCTCTTTGCCTCACCTTGTTTTTTTTTTTAAATCCCCATGGGAGGACATGAGCCACTTCCTCTTAAGTGCTCCCCCTTCCATGTTTAGTTGAGTATC---------------------------------------------------------CTGAGTCTTGTAGGATGGGAGGAGAAAGTAGAAGCCAGATTTTC-CTCCTTGGCCTTCATCGTTTAAGAAACTTCTGTTTTGAGGGTCAGCTTTTTTGAGTTCTTCTCTGCCTAATTATTCTTTCTCTTGTCCATATGCAG Neomys_fodiens GTGAGAGCAGAAGGG{GT}CTCAGGGGC---------TCAGAGGGGGGAAAGGCTCCTCTCTCCCCCC--AAGGATGGGACAGGCTTCCCAGGACGGGACCTCGGTGTGGCC---------------------------------------------------------------------------------------TTCCTTCCTTATTCAGATGCGTAAATATCACACATCTCTAATAAGATGAGTTCAGGTTGGCCCTCGGTTCTGATGGGTAGAAC-------TACTTGATGGCATTAGGAAGTAGGACTTGGAATTTTGTTTCTTGGCCATGATTGTCTAAG---TTTCTTTTTTGGAGGTGGGGGATTTTAAATTAT-----------CCTTTCTTCTT---TTCCACATGTAG Pteropus_vampyrus ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sorex_coronatus GTGAGTGGCAAGGGCTTTCAGGGG-GTGCCTTATCTCTGAGTGAGAATGCCTCTTCTCTCTCCCCCCAAGCCTGGAACTGGCTTTCCAGGAGAGGACCTGGATGCACCATACTGACCTAGAAGGTCTCATTGCCTTACCTCTTGTGTTCTTTCTTCTTCCACTAGTATGTGGTGAGCACTTTCCTTCCAAGAGTGCCTCCTTCCATATTCAGATGTATAAGTATCACACATCTTTAGTAAGATGAGTTAAGGTTGGCCCTCGGTTGTA---------------------CTGATGGCTTTAGGAAGTAGGACCTGGGTTTTCGTTTCTTGACCCTAATTGTTTAAGACAGTACTTTTTGGGGG--------------------TTCCAATTATCCTTTCTTCTGTCCATATCTTTGTAG Tursiops_truncatus ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23455] TITLE Neomys_TRAIP_intron_8; LINK TAXA = TaxaForAnalysisStep14251; DIMENSIONS NCHAR=617; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ailuropoda_melanoleuca G-----TAACG-GGAGCAAAAGGTGAGGGGAGAGGTGGCTATCCTTTTGTCATGCTCATTGCTGTCTCCTGAGCAAAGCCATGGGGCCTCATGGTGCGACAGACTCCACGGGGCCG-TGGGTGATTCACAGAGACTGGTTCCA----------GGGCCTTGGCTCTGGCTCTGTGGCTTGTCCACTTAGGGTGGCAGGTCACGCGGCTACCCGCCAATACGTGCATACTTACA---ACTTCTATTCTCCCTGGCTCCTGGGCACCTCTCAGTGGGCTGGATAGCACAGAGCCCAAGTGTGACTGTGTCAGGGGTCTGCTTTAGTCCCAGGCCCAGAGCAGGAGGTCCTCGGAACCCCGTTCAGTCAGCATAGCTG-CTTTATCTCTG---CCCATGCACCCGTGGGCTGTCAGGTGTAGAGTGCAACCCTAGTTCCTGGGCAGCTCCGGATGGGTGTGGACAG-----------GCCCCACAAAGCCAGGGTCTCCCCATGTGTCCTCAGATTCCTCTGGACCCTGGGCTCCCGTGAGCACGCGCTGGGTAGCAGCAGGTGGGGGCAGAGCACACGGCTGCCTGCTGGCCTGTCCTTTCCTCCCTATACTTTCTTGT Bos_taurus GTAACTTAATGGGGAGCCGAGCGCCAGGGGAGAGGTGGCTGTCCTTCTGTCATGCGTGTGAGTCTCTCCTAGGCCAGGCCCTG---------------------------GGGCTGTGGGATGACTC-------CTGGCTTCTGGTCCTCACTAGGCACTGACTCTGGCTGTGTGGCTTGTCTGCTTAGGGTGGCAGGTCATGCAACTGCGCCCCAACAGCTGCACACTTCTGTTCCCC---------------------ATACCTCTCAGCTGGCTGGGGCACACAGGTCCCAAATGTGATGGCTTCAGAGGCCTGTTTTTGTTCCAGGCCTAGAGTAGGAGGCTCTTGAAACCTGAATCAGTCAACACAGCTGCTTTTATTTCTGGGCATGGTGCATGTCAGGGTAG--GGATGTAGGGAGGAGC-------CCTGGACTGCTCCAGATGAACACTGCCAGACTAAGGTCCAGCCCCGTGGAGCTCGGGTCTTC-CCTGTGTCCCCCGCTCCTCCTGGGTC-TGGGCTCCCATGAGC-----TAGGGTAGCAGCAGGCAGGGACAGGGCATACAGCCACCCCTGTGTTCGTCCTTCGCTCCTTACACTTTCTTGC Canis_familiaris GTAA--CAGTG-GGGGCAGAAGG-GGAGGGAGAGGTGGCT-TCCTTTTGTCCTGCTCGTTCCTGTCTCCCGAGCAAAGCCATGGGGCCTGAT-GTGCAACAGACTCCATAGGGCTGTGGGGTGATTCAGAGAGACTG----------CTTACTGGGCCTTGGCTCTGGCTTTGTGGCTTGTCCACTTAGGGTGGCAGGTCATGCAAGTACCCCCCAATGTGTGCATGCTTATGCTCCCTTCTATTCTTCCTGGCTCCTGGGTAACTCTCAACTGGCTGAAGAGCACAAGTCCCAAATGTGACAATGTCCAAGGCCTGTTTTTGTACCTGGCCCAGAGTAGGAGGTACTTGGGATCCAGTTCAGTCAGCACAGCTG-TTTTATTTCTGGGCCTGGTGCATCCATGGGCTGTCAGACATAGAACTCAGCCCTAGTTCCTAGGCAGCTCCAGATGGGCATTGACAG-----------GCCCCACAAAGCCAGGGCCTCCCCATGTGTCCTCAGACTCTTCTGGACACTGGGTTCCCATGAACATGCACTGAGT----------------AGAGCACGTGGCCACCTGCTGGCTTGTCCTTTACTGCCCATACTTTCTTAT Crocidura_russula ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Equus_caballus GTAACTTAGCG-GGAGCAGAAGGTCAGGGGACAGGTGGCTGTCCTTTTGTCATGCTCATTCATGTCTCCTGAGCAAGGCTGTGGGGCCTGATGGTGCAGCTGACTCAATGGGGCTGTTGGATGACACACAGGGACTGGTTATTGGTCCTTACTGGGCTTTGGCTCTGGCTATGTTGCTTGTCCACTTAGAGTGACAGATCAGGCTGGTACCCCTCAACATGTGCACAC-TATGTTCCCCTCTGCTCTTCCTGGCTTCTGGGTACCTCTCAGCTGACCAGAGAGCACAGGTCCCAAAT-TGACAGCTTCAGAGGCCTGTTTTTGTGCCAGGCCCAGAGTAGAGGGCTCTTGAAACCTGGTTCAATTAGCACAGCTGCTTTTATTTCTGGGCATGGTGTACCCATGGTATGCAGAGTATAGGAAGCAGCTCCCACTCCTGGGCAGCTCCAG-TGAACGTTG-----------------CTCACAGAGTTAGGGTTTCCTCCCATATCCCCAGACTCTTCTGGACCCTGGGCTACCATGAGCATGCACTGGGTAGTTGTAGGCGGGGGCAGGGCACATGGCCACCCATTGGCTGGTCCCTTACTCCCTATACTTTCTTGT Erinaceus_europaeus GTAATGTGGGGGCGAGTGGAAGGCAAAGGCAGAAGGGACTGTCTTGAGGTCGTGCTAAGTCATGGCGCGCCAGCCTTGCTTCGAGTGCTGCTGCCTTCTCTCATGAAGTGGTGCTGCTGAAGGGACAAGAGAAACTAGTTGTCAGTCCTCACTGGGCATTTATTCTGACTCAGTGGCTTGTCCTCTTAGAGTGGTATATCGTGGTGACACACCCCCACAAATGCAAGCTTATTCTCCCCTCTGCTTTTCCTGGCTTCTAGGCACCTCATTTCT--CTAGAGAGTACGGGTCGCTAATGTGACAGCTTCAGAGGCTGCCACCTCC-----------------GGGCTCTTGGTACCTGACTCATTCAGTACAACTT-TTTTATTTCTCGGCAT-GTACATATA--------------------------------CTTCTAGAGCTCCAGAAAGACATTACTAGACTAATG-CCAGTTACAGAGAACTAGGATTTCTCCTCATGTGCCCAGGCTTTTCTGGATCCTGTGCTGTCCTGGCCATGCAGTGAGCAGTAGTGGGTGGGACCAGGGCACATGGCAGCTCCATGGTTCGTCCATGACTCCCTACTCTTTCCTAA Felis_catus GTAA--CAGTGGGGAGCAGAAGATGAGGGGAGAGGTGGCTGTCCTTTTGTCATGCTCGTTCCTGTCTCCTGAGCAAAGCCATGGGGCTGGATGGCACAACGGACTCCATGGGGCTATTGGGTGACTCACAGAGACTGGTTACTGGGCCTTACTGGGCTCTGGCTCTGGCTCTGTGGCTGGCCCACCAAGGCCGGCAGTTCACACAGGGCTCCCCCAGTATGCGCACGGTTACACTCCCCTCTATTCTTCCTGGTTCCTAGGCACCTCTTAGCTGGCTGGAGAGCACAGATCTCTAAGGTGCCAGTGTCCGAGGCCTATTTTTGTACCAGGCCCAAAGTAGGAGGTACTTGGAACCTGGTTCAGTCAGCACAGCTG-TTTTATTTCTGGGCCCAGTGCATCGGTGGACTATTGGGCATAGAACGAAGCCCTTGTTCCTGGGCAGCTCCAGATGGACATTGACGGATTAAAGCCCTGCCCCACAAGGCCAGAGTCTCTCCTTGTGTCCTCAGACTCTTCTGGACCCTGGGCTCCTATGAGCATGCACTAGGTAGCAGCAGGTGGAGGCAGAGCACAGGGCCACCTGTTGGCTTGTCCTTTACTCCCTACACTTTCTTAC Homo_sapiens GTAACTTAGCAGTGAACAGA-GGTTGAAGGAGAAGTGGCTCTCCTTTTGTCATGTTCACTCTGGTCTCCTGAGCAAGGCCATGGGACCTGATGGCACAGCTGACTCCCTGGGGCAGCTGGAGGACTTACAGAAATTTGTTACCAGTCCTTACTGGGCATTGG-CCTGAATATGTGGCTTGTCCACTAGGGGTGACAGATCACAGAGGTATCCCCCAACATGTGGACACTGATGCTCCCCTCTGCTCTTCCTGGCTCCTGGGTACCTCTCAGCTGGCTGGAGAGCACAGGCCTCAAATGTGACAGCATCAGAGGCCTATTTTTGTACCACATCTGGAGTAGAAGGCTCCTGGAACCTGATTCGGTCAGCACAGCTGCTTTTACTTCT-GGCATGGTGCATCCACAGGCTGCAGGATGTAGGAAGCAGCCTTTGCTTCTAGGCAGCTCCGGATGTGCATTGCCAGACTGAGGCCTAGCCTCAGAGAGCTGGGATCTCTGCCCATATCTCTAGTCTCTTC-------TGGGCTACCTTGATCACTCCCTGGGGAGCAGCAGGAGGGGGCAGGGCACAAGGCTACCACTTGGCTTGTCTTTCATTCCCTACACTTTCTTAT Macaca_mulatta GTAACTTAGCAGTGAACACG-GGTTGAAGGAGAGGCGGCTCTCCTTTTGTCATGCTCACTCTGGTCTCCTGAGCAAGGCCATGGGACCTGATGGCACAGCTGACTCCCTGGGGCAGCTGGATGACTTATAGAGATTTGTTACCAGTCCTTACTGGGCATTGG-TCTGAATATGTGACTTGTCCAGTAGGGATGACAGATCACAGAGGTGTCTGCCAACATGTGGACACTCATGCTCCCCTCTGCTCTTCCCAGCTCCTGGGTACCTCTCAGCTGGCTGGAGAGCACAGGCCCCAAATGTGACAGCGTCAGGGGCCTATTTTTGCACCATGTCTGGAGTAGGAGGCTCCTGGAACCTCATTCGGTCAGCATAGCTGCTTTTACTTCT-GGCATGGTGTAGCCACAGGCTGCAGGATATAGGAAGCAGCCTTTGCTTCTGGGCAGCTCCGGATGTGCATTGCCAGACTGAGGCCTAGCCTCAGAGAGCTGGGATCTCTTCCCATACCCCTAGTCTCTTCTAGACTCTAGGCTACCTTGATCACTCACTGGGGAGCAGCAGGAGGGGGCAGGGAACAAGGCTAACACTTGGCTTGTCCTTCACTCCCTACACTTTCTTAT Myotis_lucifugus GTAC--CTGTGGGGAGCAGAGGGTGAGGGAGATG--GGCCGTCCTGCTTTCACGTGCGGTCACGGCTCCTGAGCAAGGCCCAG--GCCTGAGGGTGCAGCTGACCC--AGGGGCTGTCGCCTGGCTCACAGAGACCAGTCACTGGTCCTCAC-GGGCGTTGGCTCAGGCTGTGTGGCTTGTCCAGTTAGGGTGGCGAGTCACGCAGGTGTCTCCTGGC--GTGCAGCCTGATG----CCCCTGCTCCTCCCGGATCCTG-----CCCTCAGCTGGCGGGAGGGCACAGGTCCCAAATGTGCCACCTTCGAGG-------TCTGTACCAGGCCCCAAGCATACGGCTCTTGGAACCCGATTCGGTCAGCACAGCTG-CTTTACTCCTGGGCCTGGTGCATCCACGGGCCGCAGGGCATAGG------------------GGCAGCCC----------------------------AGCCCATAGAGCTAGGGTCTCC-CTGGGGGCCCCCCACACTCCTGGGCCCCGGTCTACCCTGAGCAGGC---TGGCCGCAGCAGGT-GGGGCAGAGCACGCGGCCACCCTTGG------CTCATTCCCCCTCCACTTGCCTGC Neomys_fodiens GTAACTTAGAG-------------GGGGGCAGAGATGCCTAT-TTTTTGTCATGTACACT-ATGTCTCCTAAGCAAGGCCTTAGAAA-TGGTGGTACAGCTGGTTCCATGGGGCTGCCGGGTGATTC----AGTCTGGTTACTGGTGCTTACAGGGCATTCACCCTAACCAGATGGCTTATATGTCC-------CAACACATGCAGATTTCCTCTGCTCTCTGC----------TCCCCTGTGCTGCTCCTGGCTCCTAGACATCTGGCTG-----GGGAGAGCACAGGTTCCAAATGTGATGATGTTAGAGGCCGGGTTTCGT-------CCAGCAGAGGAGGCCATTGGAACCTGATTCAGCCTGCACAGCTGCTTTCATTTCTGGCCAT-GTATATCCATGGGCTGCAGAGTGCAGGAAGTAGCCCTTGCTCCTGGGAAGCTCCATAGGGACACTGCCAGCTGAAAGCCCCATTGTGGAGAGTTCAGCC--------------------------------TGGGCCGTCCTGACT--------------GGATGGCAGGAGTAGAGCCCAGGGGGACCTGGAGGCGCATCCTTTCATTCCTACCCATTTTTAT Pteropus_vampyrus GTAACTTAGTGAAGAGCAGAGGGGGAAGGGAGGTGTGGCTGTCCTTTTTTCATGCTCATTCATGTCTCCTGAGCAAGGCCCTGGCGCCTGATGTTGCCACTGACTCCATGGGGCTGTTGGGTAATGCACAGAAACTGGTTACAGGTCCTCACTGGGCACTGGCTCTGGCTAAGTGGCTTGTCCACTTAGGGTGGCAGGTCACGCCGGTATCTCCCAACTCGTGCACGCTTACGTTCCCCTCTGCTCTTCTTGGCTCCTGGCCACCTCTCAGCTGGCTGGAGAGCA-AGCTCCCAAATGGGACAGCTTCAGAGGTCTGTGTTCGTACCGGGCCCAGAGCAGGAAGCTCCTGGAACCTGATACGGTCAGCTTGGCTGCTTTTATTTCCGGGCTTGGTGCACCCATGGGCTACAGGTTGTAGGAAGCAGCCCTTGTTCCTGCGCAGCTCCAGACGGACATTTCCAAACTAAAGCCCAGCCCCACAGAGCTAGTGTCTTCCCCCGTACTCCCACACTCTTCTGGACCCTGGTCTACCGTGAGCACGCACTGGGTAGCAGAGGGCAGGGGCAGGGCACATGGCCGCCCCTT-GCTCATCCTCTACTCCCTACACCTTCTTAT Sorex_coronatus GTAACAGAGAG-GAGGAGGGGAAAAGGGCGGGAGATGACTATTCTTTTGTCGTGTACAGTTACGTCTCCTAAGCAAGGCCTTAGAAACGGATGGTGCAGCTGGTTCCAC-GGGCTGTCGGGTGATTTGGAGAGACTGGCTACTGGTGCTTCCAGGGCATTCACCCTGGCTAGACGCATGTT-------------CAACACATACATAGGTCCTCTGCTCTGTGC-----------TCCCTTTACGCCTCCTGACCCCTAGACCCCTGGCTG-----GGGAGAGCACAGGATCCAAATGTGATGACTTTAGAGGCCTGTTCTTCTACTAGGTCCAGCAGAGGAGGCCCTTGGGACCTGAGTCAGTCTGCACAGCTGCTTTTATTTCTGGGCAT-GTGTATCCGTGGG----------------------CTTGCTCCTGGGAAGCTCCAGAGGAGTACTGCCAGATGAGAGCCCTGTCACATAGAGCTAGGC-----CCCTGAGCTGCCGGACTCTTGTGGGAGCTGTTTTGTTTTGTTT--------------GGGGGGGGGGG?GCGTGCGCGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT Tursiops_truncatus GTAATTCAGTGGGGAGCTGACAGTGAGGGGAGAGGTGGCTGTCCTTTTGTCATGCTCATGTGTGTCTCCTAAGCAAGGCCATG---------------------------GGGCTGTTGGATGACTCACAGAGGCTGGTTTCTGATCCTTACTGGGCATTGACTCTGGCTACATGGCTTGTCCAGTTAGGGTGGTAGATCAGGCAGGTACCCCCCAGCCTCTGCACACTTCTGTTCCTCTCTGCTCTT--------CTGGGTACCTCTCAGCTGGCTGGAGCACACAGGTCCCAAATGTGACAGCTGCAGGTGCCTGTTTTTGTTCCAGGCCCAGAGTATGAGGATCTTGGAACCTGATGCAGTCAGCACAGCAGTTTTTATTTCTGGGCATGGTGCATCCATGGGCAA--GGGTGTAGGAAGTAGCCCTTGCTCCTGGGCAGCTCCAGATGGACATTGCCGGACTAAGGTCCAGCCCCATGGAGCTAGGGTCTCCCTCCCGTGCTCCCAGCTCTTCTGGACCCCGGGCTACCACGAGC-----TGGTGTAGCAGCAGGTGCGGGCAGGGCACATGGGCACCCCTGGGTTCATCCTTTTCTCCTTACACTTTCTTGT ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23445] TITLE Neomys_CSF2_intron_2; LINK TAXA = TaxaForAnalysisStep14251; DIMENSIONS NCHAR=734; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ailuropoda_melanoleuca GTAAGGTGCTTCTCTCTGACACACCTTCCCAGAGACCTCTACCTTGGGGGGTGGCTCCATTGCAGATGAACTCTCACAGGGTGGTCCACTTTCTCTCCAGTCAGCTGGCTGCCAGGAGAGG---CTCTCAGGAGGCCACTGGCCTTGCCCCTGTGGCAGTCGCATGAACTCCTTCATTAGCTGAGCAGCCACGGACAGACCTAGCATCCAAGGGGCCAGGGGTCACCAGGGGACAGGTGGGTAAGCGGGAGTTACTTTAAGACACAGGGGCTGTGGGCTTGGGGCACTCA--------TGAGACTAAGCCCTGTGGACACAGTGTGCTGGCTACAGAGAAGCACAGAGAGATTTCAGGAACAAGCCTTGTTCACACAGCAGGTCGGGGGGATGCCCCACTACCTTCTCCCCAAATGGTGGGGGGATAGCAACCTCATTTCCTGGGGCCTGGGACCCTCTCGAGATGCC------AGGGAATGTGGCTATGCTAGCTGAGGGTGGCCTGAGCTGAATGGTG--------CAGATTCATGTTATTA---------TGAACACAGCAGTATGTATGACTGAACCCGAC---------------ATCATCCTGTGCCCCTCCCGAGTCCTACGCTTGGGGGACAGGGCTGAGAACAGGAAAGAGTGACGGGGAGGGTGTCATGTGCCCACCAGAGGGCACTTGTCCACTATTCACCAAGAAATGGACATTTCCCACAG Bos_taurus GTAAGATGCTTCTCTCTGACACACCTTCCCAAAGGCCTCTGCCCTGGGGACTGACTCCATTTTAGACGGACCCTTACAGGGTTGTCCGCTTTCTCTCTAGCCAGCTGGCTGCCAGAAGGAGGGTTGCTTAGAA-------GGCCTTGCCCCTGTGGCAGTCATGTGGACTCCTTTACTAGCTGAGCAGCCATGGACAGACCTAGTGTTCAAGGGTATCGAGGTCACCAGGGGACTG--------GCGGGGGTTATGTCATGAGACAGGGGCTGTGGGCTTGGGACACTCACTGTGCCCTGAGACCAAGCTCTGTG--GACACCGTGCTGGCCACTGAAGGTCACAGAAGATTTTCAGGAACAA-CTATGTCTGCACAACAGCTTTGGGCAAGCCCCCCGCCCCCTTCCCCCGAAGGGTGGAAGGACAGCGATCTCCTTCTCTGGGGGCTGGGACCCTCTTGAGATACCAGATCAAGGGAATGTGTCTGTGCCGGCTGGAGGTGGCCTGAGCTGAGTGGTGAGGGGAGTCAGACTCAT--CTGTAGTGGATGGGGGGACAAGGCTGTGTGTATGACAGGGCCTAGCTGAGCTTAGTCAGGAACAATCCTGTGCCCCTCCCAGGCCCTGCTCTTGGGAGAGTGGGATGAGAACAGGAAGCAGTGATGGGGAGGATGTCCTGGGCCCACCAGAGCACACTCGGCCACTGCTCACCAAGGAATGGACATTTCCCACAG Canis_familiaris GTAAGATGCTTCTCTCTGACATGCCTTCCCAGAGACCTCTACCGTGGGGGGTGGCTCCATTTCACATGGACTCTCATAGGGTGGTCAGTCCTTTCTCCAGTCAGCTGGCTGTCCAGAGGGG----CCTCGGGAGGCCACTGGCCTTGCGCCTGTAGCAGTCATGTGAACTCCTTCATTAACTGAGCAGCCATGGACAGACCTAGCATTCAAGGGGCCAGGGGTCACCAGGGGACAGGTAGGTAAGTGGGAATTACTTCAAGACACA-GGGCTGTGAGCTTGGGGGACTCA--------TGAGACTAATCTCGGTGGAGACAGAGTGTTGGTTACAGAGAGGCACAGA--GATTTCAAGAACAAGCCTTGTTCACATAGCAGGTGGAGGAGATGCCCCACTACCTTCTCCCTGAATGGTGAGGGTATAGGGATCTCCTCTCGTGGGGGCTGGGACCCTCTTGAGATGCC------AGGGAATGTAGTTGTGCTAGCTGAGGGTGGCCTGAGCTGAATGGTG--------CAGATTCATTTTT-----------------------GCGTGTATGACTGGACCTAGC---------------ATCATCCTGTGCCCCTCCCAAGTTCTGCTCTTGGGGGACAGGGCTGAGGACAGGAAAAAGTGACAGGAAGAGTGTCATATGCCCACCAGAGGGCACCTGTCCACTACTCACCAAGGAATGGACATTCTCCACAG Crocidura_russula -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Equus_caballus GTAAGATGCTTCTCTCTGACACACTTTCCCAGAGGCCTCTGCCTTAGGGGGTGGCTCCATTTTAGAAGGACCCTCACAGGGTTGTCCACTTTCTCTCCAGTCAGCAGGCTGTCAGAAGGAG---TGCCCAGGAGACCACTGGCCTTGCCCCTGTGGCAATCATGTGAACTCCTTTATTAGCTGAGCAGCCATGGACAGACCTAGCATTCAAGGGGTCAGGGGTGACCAGAGAACAGTTGACTAAGCGGAAGTTACTTCGTGAGACAGGGGCTATGGAGTTGGGGCACTCGATGTGCCCTGAAAGTGAGCTCTGTGGAGACACAGTGCTGGCTACGGAGGGGCACAGAGGGGTTTCAGGAACAAGCCTTACTCACAGAGCAAGTCCAAGTGATGTCCCGCTCCTTTCTCCCTGAATGGTTTGGGGATAGTGACCTCATTTCCTGGGGGCTGGGACCTTCTTGAGATGCCAGACCAAGGGAATGTGACTGTGTTGGCTGAGGGTGGCCTGAGCTGAACGGCGAGAAGAGTCAGACTCATGCCTGCAGTGGACAGGGAGACAGGGTAGTACGTGGGACTGGACCCAGCTGAGACTAGTCAGGAA---TCAAGTGCCCCTCCCAGGCCCTACTGGTGGAGGACAGAGATGAGAACAGGAAAGAATGATAAGGAAGGTGTCCTGTGCCCACCGAAGGGCACTTGGCCACTGCTTACCAAGAAACGGACGTTTCCCACAG Erinaceus_europaeus GTAAGATGCTTTTCTCTGATATACCTTCCAAATGGCCTCTTCCCTGGGAGGTGG------------------TCTATTTAGATACCCACTTTCTCTCCATTCCACTGGTTGTCAAAAAGCAGGGTGCTCAGAAG------------GCCCCTGTAGCAGTCACGTGGACTCCTTTATTAGCTGAACAGTAATGAGTAGTCCTTGTATTTAAAAGGCCAGAAGTCACCATGGAGCAGGTGGGCAAGACCACATTAATTCATGTGAAAAGGGCTGTGGGCTGGTG---CATTACCTGTCCTGAGACCGAGACCTGTCTGGACAAGGTGCTGGCTATGGAGAGGCACAGAGGAGATTCAGAAACAAGCCTAGCTCACGATTCATGCCCTGGCAATGTCCTGTCATCTTCTCCCTGAATAGTGGAGGATTACTGACCTCCTTTCCTGAACTTTAGGACCTTCTT-AGATGTCAGGAGAAGGAAGTTTGTTTGTGCTGGCAGAGGGAGGTTCAAGTAGCACAGTAAGAAGAGGGAGACTCATGTTTACAGTGAACAGGGAGACTGGGCAATATATATGAACAGACCTGGCTGAGACTAGTTGAA-ACCATTCTGTACCCTTCTTGGGTCTCACTCTTGAAGAACAGAAATGGAAACA-GAAGGAGTGATGGGTAGAGTGTCTTGTGCTCATTGGTAGGCAGCTGATCACTGCTCACCAATGAACAAACCTTTCTCACAG Felis_catus GTAAGATACTCCTCTCTGACACACCTTCCCAGAGGCCTCTACCTTGGGGGGTGGCTCCATTTTAGATGGACTCTCACAA---AGTCCACTTTCTCTCCAGTCACCTGGCTGCCAGAAGGAGGGGTGTTCAGGTGGCCACGGGCCTTGCCCCTGTGGCAGACATTTAAACTCTTTCGTTAGCTGAGCAGCCATGGACAGACCTAGCATTCAAGGGGGTGGGAGTCACCAGGGGACGGGTAAGTAAGCAGGAGTTACTT-----------------------------------------TGAGACCAAGCCCTGTGGAGACAGAGTGCTGACTACAGAGAGGCGCAGAGGTATTTCAGGGTCAAGCCTTGTTCACATAGCAGGTCTGGGGGATGTCCCATTCCTTACTGCCCGAATGGTTGGGGGATAGCAACCTCCTTCCCTGGGGACTGGGACCCTCTTGAGATGCC------AGGGAATGTGGCTGTGCTAGCTGAGGGGGGCCTGAGCTGAATGGTG--------CAGATTTATGTTTACA---------TGAACACAGCAGTATGGATGACTAGACCCGGC---------------ATCACCCTGTTCCCCTCCCAAACCCTACTCCTGG-GGACAGGGCTGAGAACAGGAAAGAGTGACAGGGAGGTTGTCATGTGCCCACCAGAGGGCACTTGGCCACTTCTCACCAAGGAATGGACGTTTCCCACAG Homo_sapiens GTAAGATGCTTCTCTCTGACATAGCTTTCCAGAAGCCCCTGCCCTAGGTGGGGACTCCATTTTAGATGGCACCACACAGGGTTGTCCACTTTCTCTCCAGTCAGCTGGCTGCAGGAGGAGGGGGTGCTCAAGAGGCTGCTGGCCGTGCCCCTATGGCAGTCACATGAGCTCCTTTATCAGCTGAGCGGCCATGGGCAGACCTAGCATTCAA-TGGCCAGGAGTCACCAGGGGACAGGTGGTAAAGTGGGGGTCACTTCATGAGACAGGAGCTGTGGGTTTGGGGCGCTCACTGTGCCCCGAGACCAAGTCCTGTTGAGAC--AGTGCTGACTACAGAGAGGCACAGAGGGGTTTCAGGAACAACCCTTGCCCACCCAGCAGGTCCAGGTGAGGCCCCACCCCCCTCTCCCTGAATGATGGGGTGAGAGTCACCTCCTTCCCTA-AGGCTGGGCTCCTCTCCAGGTGCC-------------------------GCTGAGGGTGGCCTGGGCGGGGCAGTGAGAA-GGGCAGGTTCGTGCCTGCCATG--------GACAGGGCAGGGTCTATGACTGGACCCAGC---------------------CTGTGCCCCTCCCAAGCCCTACTCCTGGGGGCTGGGGGCAGCAGCAAAAAGGAGTGGTGGAGAG-----TTCTTGTACCACTGTGGGCACTTGGCCACTGCTCACCGACGAAC-GACATTTTCCACAG Macaca_mulatta GTAAGACGCTTTTCTCTGACGTAGCTTTGCAGGAGCCCCTGCGCTAGGTGGGGGCTCCATTTTAGATGGCACCTCACAAGGTTGTCCACTTTCTCTCTCATCAGCTGGCTGCAGGGGGAGGGGGTGCTCAAGAGGCTGCTGGCCGTGCCCCTGTGGCAGTCACATGAGCTCCTTTATCAGCTGAGTGGCCATGGGCAGACCTAGCATTCAA-GGGCCAGGAGTCACCAGGGGACAGGTGGTAAAGTGGGGGTCACTTCATGAGACAGGAGCTGCAGGTTTGGGGTGCTCACTGTGCCCTGAGACCAAGTCCTGTTGAGAC--AGTGCTGACTACAGAGGGACACAGAGGGGTC----------------------CAGCAGGTCCAGGTGAGGCCCCGCCCCCCTCTCCCTGAATGATGGGGTGAGAATCACCTCCTTCCCTA-AGGCTGGGATCCTCTCCAGGTACC-------------------------GCTGAGGGTGGTCTGGGCTCGGCAGTGAGAA-GGGCTGGCTCGTGCCTGTCATG--------GATAGAGCAGGGTGTATGACTGGACCCAGC---------------------CTGTGCCCCCCCCATGCCCTACTCCTGGGGGCTGGGGACAGCAGCAGAAAGGAGTGGTGGAGAG-----TTCCTGTGCCACTGCAGGCACTTGGCCGCTGCTCACCGAGGAAC-AACGTTTTCCACAG Myotis_lucifugus GTAAGATGCTCTTCTCTGACTCACCTTCCCAGAGACCTTTGCCTTAGAGGGTGGCTCCATGTTAGATGGATTCTCACAAGGTGGTCCACTTCCCCTCCAGTAAGCTGGCTGCCAGAAGGAGGTGTGCTCAGAAGG-CACTGGCCTTGCCTCTGTGGCAGTCACATGAGCTGCCTTATTATCTGAGCAGCCATGGACAAACCTAGCATTCAAGGGGCCAGGGGTCACCA-GGGACAGGTGGGTAAG-------------------CAGGGACTGTGGGCTT------------------------------------------AGTGCTGGCTACAGAGGGGTCCAGGCGATGCCCTG-------------------------------------CCCCCCCCCTTTTCCCTGAAAAGTGGGG---TAGTGACCTCCTTTCCTAAGGGCTAGGACCCTCTTGAGATGCCA--------------GGCTGTGTGGGCTGAGGGT-GCCTGAGCTGAGTGGTGAGGTGAGGCAGATTGGTGCCTGCAGTGGACAGGG-GGCAGGGCAGCATATATGACTGGACCTGCCTGAGACTAGCTCGGA-------------CCTCCCAGGCTCTACTCTCAGGGGACAGGGATGAGAACACG---GAGTGACGGGGA---------------------GGGCACTTGGCCACTGCTTACCAAGTCCTGGACATTTTCCATAG Neomys_fodiens GTAAGGTGCTTCTCGCTGACACACCTTCCCAGAGGCCTCTAGTCTGGGGGA-GGGTCCAATTTAGATGGTCTCTCACAAGTTGATCCACTTTCTCTCCAGTCAGCTAGCTACTGGAGGAGG-GGTGCTCAG---GCCACTGGCCTTGCCCCT------GTCATGTGAGTTACTTTATTAGCTGAGCAGCCGTGGACAGACCTAGAATTCAAGGAGCCAGGGGTCACCTGGGCACTGGT-GGTAGTCAGTGATTTGTTCATGAGACAGGGGCTGTGGACATGAG---------------------CATTTATTGTTGA---AAGACAGTGGCTATAGAGGGGCACAGTCAGATTCAAGGAATGATCATTGCTCACATAGC----CCGGGCA---------CACCTTTTCCCTAAA--------------TGACCTCTGTTTCTGGGGTTTGGGACCTTCTTAAAATACCAGGGCAAAGGAATA----TGTGCTATCTGAGGGAGACTTGATCTGAGCAGTGAGCAGATTCAGACTCATGTCCAAAGTGAATAGGGAAACAGGATAGTATGCATGAGTGGTTCCCACTGAGTCAAGTTGAAAATTACCCTCACTCCCCACCAGGTCCTACTCCTAGAGAACAGGAATATGAATAAGAAAGAGTGATGGTGAG-GTGTCCTGTGTCCCT----GGGCATTTGATCAATGCTCACAGAAAAACTATCATTTCTTACAG Pteropus_vampyrus GTAAGATGCCT-----------------------GTCTCTGCCTTGAGGA--TGGCTCACTTTAGATGATCCTCTAAAGAGATATGAACTTTCTCTCCATTCAGCTGGCTGCCAAGAGGAGGTATGCTCAGAAGGCCCCTGGCCTTGCCCTTGTGGCAGTCACATGAGCTCCTTTATTATCTGAGTAGCCACAGACAGACATAGCATTCAAGGGGCCAAGGGTCACCAGGGGACAGGTGGGTAAGCAGTGATTAGTTTATGAGACAGGGGCTGTGGGCTTGGCACACTCACTATGCCCTGAGACCAAGCCCTGTGGAGACAGGGTGATGGCTACAGAGGGGCACAGAGGGGTTTTAGAAACAAGCCTTGCTCACACAGCATGTCTGGGCAATGCCCTG-CCCCTTCTCCCTGAATGGTTGGGGGATGGTAACCACCTTTCCTAGGGGCTGAGACCCTCTAGTGATGCCAGGCCAAGGGAATGTGGCTATGCTGACTAAGGGTAGCTTGAGTTGAGTGGTGAAGAGAATCAGATTCATGCCTGCAGTGGACAGGGGGACAGGGCAGTATGTATGACTGGACCTGCCTGAGACTAGTTGGAAATCATTCTGTGCCCCTCCTGGGCCCTAATCTTGGAGAATGGGGATGAGAACAGGAAGAAGTGATGGAGA---------------------GGACACTTGGCCACTACTTACCACGGAATGGACTTTTTCCACAG Sorex_coronatus GTAAGATGATTCTCTCCGACACACCTTCCCAGCGTCCTCTGCTCTGGGGGA-GGGTCCATTTTAGATGG-CTCTCACAGGATGATCCACTTTCTCTTCAGTCACCTGGTTACCAGAGGGGG-TTTGCTCA----------GACCTTGCCCCT------GTCATGTGAGC--CTTTATTAGCTGAGCAGCCATGGATAGACTTAGTATTCAA-GAGCCAGTGGTCATCTGGGCACTGGTGGGTATGCAGTGATTTGTTCGTGAGACAGGCGCTATGGGCATGGG---------------------CATGTATTGCTGA---AGGATGGTGGCTAGAGAGGGGCACAGAGGGATTCAAGGATAGATAGTTGCTCACATTGC----CTGGGC-----------------------------------------ACCTTCTTTCCTGGGGGTTGGGACTTACTGAAAATGCCAGGTCAAAAGAATGTGGCTGGGCTAGCTGAGGGAGACTTGATCTGAGCAGTGAAGAGGATCAGACTCATGCCCCTAGTGAACAGGGAAATAGGACAGTATGCACGAGCGGTCCCCACTCAATCAAGTAGAAAGTACTCCCTGCCTCCCACTAGGTCCTATGCCTAGAAAACAGGAATAGGAATAAAAAGGAGTGATGATGTG-GTGTCCTGTATCCCT----GGGCTCTTGGCCAATGCTCA--GAGAAATTCTCATTTCTTCCAG Tursiops_truncatus GTAAGATAC--CTCTCTGACACAACTTCTCAAAGGCCTCGGCCCTGGGGAGTGACTCCATTTTAGATGGACTGTCACAGGGTTGTCCACTTTCTCTCCAGTCAGCTGGTTGCCAGAAGGAGGGCTGCTCAGGAGGCCACTGGCTTTGCCCCTGTGGCAGTCGTGTGAGCTTCTTTACTAGCTGACCAGCCATGGACAGACCTAGCATTCAAGGGGCTAGGGGTCACCAGGGGACAGGTGGGTAAGTGGGAGTTATGTCATGAGACAGGGGATGTGGACATGGGGCACTCACTGTGGCCTGAGACCAAGCCCTGTG--GACACGGTGCTGGCTACTGACGGGCACAGAAGGATTTCAGGAACAAACTTTGCTCACACAGCAGGTCTGGGCGAGGGTCCCCCTCCTTCCCCCTGAATGCTGGGAGGACAGTGACCTCTTTTTCTGGAGACTGGGACCCTCTTGAGATG-CAGGCCAAGGGAATGTGGCTGTATTGGCTGGGAATGG-CTGAGCTGAGTGGTGAGGAGAGTCAGACTCATGCCTGCAGTGGACAGGGGGACAGGGCAGTGTGTATAACCGGGTCCAGCTGAGATTAGTCAAGAATAGTCCTGTGCCCCTCCCAGGCCCTGCTCTTGGTAGATAGGGATGAGAACAGGAAGGAGTGATGGGGAGGATGTCCTGTGCCTACCAGAGCACACTTGGCCACTGCTCACCAAAGAATGGACATTTCCCCCAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23449] TITLE Neomys_HIF1AN_intron_5; LINK TAXA = TaxaForAnalysisStep14251; DIMENSIONS NCHAR=412; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ailuropoda_melanoleuca GAGGAGGGGACTAGGACTGGGGGCTTCTTGGGAGCTTTCTTTCCCATTCCCCGGAAAGCTGTATCTATGTCCCTTCTGCGTTGTGGCAAAATTGGTCTTATCTGATCTACAGAAAGGTTGGCGTATCCAGATGTGAGCGTACTGAACATGGGGGAAATGACAACCCAGTCTCTAGGACAAGATGACAATTCCTCAGGTCCAAAGGGATCGCAGAGGGTTGAGGCTGGAGAAAATGTTCTTGGTTCTTTT-TATTTGGAGACTGAACACACTGCCTCTGGTCCCGGGTGTGTTTGACAGGATGAGTGTAAAGATAATGTCCTTGTTATTTGCTTTAGCCGGACTTTACCTAGTTTCCCTCCCTCCCTCTAAAGAATATTGGTGGCAAACAGGAGCATGTTTATTTTCTTGCAG Bos_taurus GAGGACGGGGCTA-GACTGGGGGCTTCTGGGGAGCTTTCTTTCCCATTCCCTGGAAAGCCTTATCCATGTCACTTCTGAGTTGTGGCAGGATTGGACTTATGTGATGTACAGGAAGGTTGGCATATCCGGATGTGAGCGTACTTAACCCGGGGGAAATGATAACATTGTTTCTA-GACAAGATAACAGTTCCTCTGGTCCAAAGAGGCCCCAGAGGCTTGAGG--------------CTTGGCTCTTTGGTATTTGAAGACCAAACACACTCCCTTTAGCTCCGGGTGTGTTTAATAGGATGAGTGTGAAGATACTGTTTTCCTTATATAGGACAGCTATATACTTCCTAGTTTGGAACCATCCCTCTGAAAAGTACTGGTGGCAAACAGCAACCTGTTTGTTTTCTTGCAG Canis_familiaris GAGGAGGGGATTAGGACTGGGGGCTTCTTGAGAGCTTTCTTTCCCATTCCCAGAAAAGCTGTATCTGTGTCCCTTCTGAGTTGTGGCAGGATTAGTTTTCTGTGATCTACAGGAAGGTTGGCATATCCAGATTTGAGCATACTGAACATGGGGAAAATAACAACCTAATCTCTCAGACAAGATGACAGTTCCTCAGGTCCAAAGAGATCCCAGAGGCTTGAGGCTGGAGAAACTATTCTTGGCTCTTTTGTATTTGGAAACTGAACACACTGCCTCTGATTCCGGGTCTGTTTGGCAGGATGAATATAAAGATAATGTCCTTATAATTTGTTTCAGCTGGACTTTTCCTAGTTTCCATCTCTCCTTCTAAAGAATATTGGTGGCAAACAGGAGCATGTTTATTTTCTTACAG Crocidura_russula GAGGCGGGGACTAGGACTGGGGAATTGTGGGGAG-TTTCTTTCCCATTCCCTGCAAAGCCTTGTCTCTGTCCCTCCTGGTTTGTGGCTGGGCTGGTCTTATGTGGTC-ACAAGAAAGTTGTCATACCCTGATATAAGCAGACTAGTTAC-GGGGAAATGACAACCCCAGCTCAAGGATGTGATGACAATTCCTGTAGTCCAAAGTGGTCCCAGAGGCT-GAGGCAGGCCAAC---CTCTTAACTCCTTGACATTTGAG-ACTAATCGTGCTGCCTTTTGCCTCGGGTGGATTTGACGGATTGAGGGTAAAGATACTGTCTTCTTTGTTTCCCTTAGCTGGACTCTGCCAAGTCTCCATCCTTCCCTTTGGA---TATTGATGGCAAACAGGAGCCTGTTTCTTTTCTTACAG Equus_caballus -GAGGAGGGGCTAAGACTACGGGCTTCTTGGGACTTTTCTTTCCCA-TCCCCGGAAAGCCTTTTCTGTGTCCCTTCTGAGTTGTGGCAGCGTTGGTTTTACATGAGCTACGGGAGGGTTGGCATATCCAAATGTGAGCCTACTGAACATGAGGGAAGTG-CAACCCTGTCTCTAGGACAAGATGAGAATTGCTCAAGTCCAAAGATGTCCCAGAGACTGGAGGCTGGAGAAAGTGTTCTTGGCTCTTTGGTACTTGGAGACTGAACA--CTGCCTCAGCCCCAGGGTGTGTTTGACGAGATGAGTGTAAAGATACTGTCGTCATTAATTCCCTTAGCTGGACTCTGCCCAGTTTCCATCCCTCCCTCTGAAAAGTATTGGTGGCCAACAGGAGCCTGTTTATTTTCTTGCAG Erinaceus_europaeus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Felis_catus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Homo_sapiens GAGAAGGGGGCTAGGGCTGGGGGCTTTTTGGGAGCTTTCTTTTCCATTCCCTGGAAAGCCTTGTCTGTGTCGCTTCTGAGTTATGGCATGATTGGTTTTATGTGGTCTATAGGAAGGTTGGCATATCCAGACATGAGCGTACTGAACGTGGCGGGAATGATAGCCCTGTCTCTAGGACAGGATGACGGTTCTTCAAGTCCAAAGAGATTCCGGAGGCTTGAGCCTAGAAAAACTGTTCTTGGCTCTTTGGTATTTCGAGACTGAACACAGTACCTCTAACCCCAAGTGTGTTTCACAGGATGAGTGTAAAGATATTGTCTTCACTATTTTCCGTAACTGGACTCCACCTAGTTTCCCTCCGCCCCCGCCAAAAGTATCAGTAGTAAACAGGAGCCTGTTTGTTTTCTTGCAG Macaca_mulatta GAGAAGGGGGCTAGGGCTGGGGGCTTCTTGGGAGCTTTCTTTTCCATTCCCTGGAAAGCCTTGTCTGTGTCCCTTCTGAGTTATGGCATGATTGGTTTTATGTGGTCCATAGGAAGGTTGGCATATCCAGATGTGAGCGTACTGAACGTGGGGGGAGTGATAGCCCTATCTCTAGGACAGGATGAGAATTCTTCAAGTCCAAAAAGGTTCCAGAGGCTTGAGCCTAGATAAATTGTTCTTGGCTCTTTGGTATTTAGAGACTGAACACAGTACCTCTAACCCCCAGTGTGTTTCACAAGATGAGTGTAAAGATATTATCTTCACTGTTTTCCTTAACTGCACTCTACCTAGTTTCCTCACCCCCCACCGAAAAGTATCAGTAGTAAACAGAAGCCTGTTTGTTTTCTTGCAG Myotis_lucifugus GAGGAGGGGGCTAGGACTGAGGACTTCTTGGGAGCTTTCTTTTCCATTTTCTGAAAAGCCTTATCTGTGTCCCT--TGAGTTGTGACAGGATTGGTCTAATGTGATCTACAGGAAGGTTGGCATATCCAGATGTGAGCATCCTGAACATGGGGGAAATCACAACCCTCTCTCTA--------------------------------------------------------------------------------------------------------GCCCCTGGTGTGTGT---GAGAGGAGCATGAAGATCCTGTCCTCTTTATTTCTCTTAGCTGGAC----CCTAGTTTCCGTCCCTCCCTCTGAAAAGTATTGGTGGCAAACAGGAACCTGTTTATTTTCTTGCAG Neomys_fodiens GGAGGTGGGACTAGGACTTGGGACTC---------------------CCCCTGCAAAGTCTTATCTCTGTCCCCCTTGAGCTCTG--------------GCATAGTCTACAGGTAGGGCCTCATACCCAGATGTAAGCACACTGAATATGGGGGAAATAGTAGCCCTGTCTCTAGGATGAGACAATAATTCTTAAACTCTGA---GGACCCAGAGGCTGGAGGCAGGGGAGCTTCCTCTTAACTCGTTGGCATTTCCAGACTGATCATACTGCCTTTTGCCTCGGATGGGTTTGACAAAATGAGGGTGAAGATAC--TCTTCATTCTTTCCCTT{AC}GCTGGACTGTGTCTAGCCTCCATCCTTCCCTTCGGAAAGTATCGATGGCAAACAGGAGCCTGTTTATTTTCTTGCAG Pteropus_vampyrus GAGGAGGTGGCTGGGACTGGGG--TTCTTGGGAGCTTACTTTTCCAGTCCCTGGAAAGCCTTATTTGTGTCCCTTCTGAGTTGTGGCAGGATTGGCCTTATGTTATCTACAGGAAGGTTGGCATATCCAGATGTGAGCATACTGAACATGGGGGAAATGATAGCCCTGTC-------------------TCCTCAGGTCCAAACTGGTCCCAGAGGTTCTAGGCTGGAGAAACTGTTCTTGGTTCTTTGGTATTTAGAGATCAAATACATTGCCTCAAGCCTCGGGTGTGTTTGCCTGAATGA--GCAAAGATACTGTCTTCATTGTTTCCCTTAGCTGAAC----TCTAATTATCATTCTTTTCTCTGAAGAGTATTGGTGGCAAACAGTAGCCTATTTATTTTCTTGCAG Sorex_coronatus GAAGGGGGGACTAGGACTGGGGACT----------------------CCCCTGCCAACGCTTATCTGTGTCCCCCCTGAGTTGTGGCTGGGTTGGTCTTACATAGTCTACAGAAAGATTGTCA----------TAAGCACACTGAATATGGGGGAAGTGACAGCCTTGTCTCCAGGATGAGACGACAATTCCTGAAGTCAGA-GTGGTGCCAGAAGCTGGAGGCAGGCATACTTGCTCTTCACTCGCTGGCATTTGGAGACCGATCATACTGTCTTCTGCCTCGGGTGGGTTTGACCAAGTGAGGGTGAAG-TACTGTCTTCATTTTCCCCCTTTGCTGGACTCTGCCTAGTCTCCATGCTTCCTTTTGGAAAATATTGATGGCAAACAGGAGCCTGTTTATTTTCTTGCAG Tursiops_truncatus GAGGATGGGGCTAGGACTGGGGGCTTTTAGGGAGCGTTCTTTGCCATTCCCTGGAAAGCCTTATCCATGTCTCTTCTGAGTTGTGGCAGGATTGGACTTACGTGATATACAGGAAGGTTGGCATATCCAGATGTGAGCATACTGAACATGGGGGAAATGGCAATACTGTTTCTA-GACAAGATGACAGTTCCTCAAGTCCAAAGAGATCCCAGAGGCTTGAGGCTAGAGAAACTGTTCTTGACTCTTGGGTATTTGAAGGGTGAACACACTGCCTCTAGCCTCGGGTGTGTTTGATAGGATGAGTGTGAAGATACTGTCTTCATTATATCCCTTAGCAGGACTCTACGTAGTTTGGATCCCTCCTTCTGAGAAGTATTGGTGGCAAACAGGAGCCTGTTTATTTTCTTGCAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23443] TITLE Neomys_ALAD_intron_10; LINK TAXA = TaxaForAnalysisStep14251; DIMENSIONS NCHAR=644; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ailuropoda_melanoleuca GTAAACAGG------TGGGGTTTCCAACCTGTGCCACGGGG-CTGATGGGCACTTTACCCAGAGAGGGAAATAAAGTCAGGAGACAGCCTGGAGTCTTACGCCTGGGAATACTGGTGATCTAAAGAGACCCAGGGGGAGGAGGGGGTGTGGAGCTGCAGAACAAAATGGGCAGCAGTGAAGACAGCAGAGCCTTCTGTCACTTTTTGGTGTCGAGACCTTAGCCAAGCCACTTCTGTGAACCTCAGCGTCCTTGTCTGCAAACCGGGGATAAAACACCCGAGGCCGGTTGTCTGGAGAATTGCGTGAGATGATATGTCATTGGCCTGTGCTCACCGCTCCACGAGTGGGAGCTGGTGGTGTTGGTGTGCACACAGCATGGGAAGGGCCCTGACGACGTACTCATTTCTTGCGCTGTGCGTTTTATACATTGGCAAACTGAGGCCCAGCAAGAGAAAATGACCTGCCCAGGTTCACACAGTGCGCAGAGCTATACCTGCCCGGAGCTGGGCTCGTCTTCTGTCGTGACGCCCATGGGCTGTGGCTCTTTGTGGTAGCCGCCTGCCCCCTCCGGC------------AGTGTGTGCCCCGAACTGATGCCCGGCCCCTCCCCCTTCCCGCTTCTGTCCCCCCGCAG Bos_taurus GTGAGCATGCAGGAGTTGGGGTTTTGACCTGGGCCACAGGGACTGATAGGCACCCTGCCCAAATAGGGAAATAAAGTTAGGGGACAGCCTGGAGTCACCTGTCTGGAAATGCCAATGATCTAAACAG--ACAGGCTGGGGAACGGACATGAAACTGCGGGGCAGAAGGT-GAGCAATGAACCATGCAGAGCCCTCAGTTACTTTTTGATTTTGAGACCTTGGGCAAGTCACTTCTCT-AACTTCAGTGTCCTTGTCTGTAGACTGGGGATAAGACAGATGGTGCTGGTCATCAAGGGGATTAAATGAGATGTTGTGTAATTGGCATATGCATGTCATTTCAGAAATGAGAGCTGGTTTTGTTGGTTAGCACACAGCGTGGCGGGGGAACTCACAGCTTGCCTATTTCCCCCACTGTGCACTTTATACATGGACACACTGAGGCCCAGAAAGAGAAAATGCCTTCCCCAAGGTCACACAGTGTATAGAGCTAGGACTGACCAGAACTAGACTCGTCTTAGGTGGTGATACCCTGGGGCTGTGCCTCTTCATAGTAGCCTTCTTCCCACCCCAGCCCTCACTCCCAGAAGGTATTTCCCAAGCTGATGCCCTGCCCC-----CTGCCCGCTTCTTTCCCCACACAG Canis_familiaris -TGAACAGGCGGGGCTGGGGTTTTTGACCTGGGCTACAGGG-CTGATGGGCACTTTGCCCAGAGAGGGAAATAAAGT--TGAGACAGCCTGGCGTCGCATGCCTGGAAATAGCAGCGATCTAAA------------GAGGAGGGGACATGGAACCGCAGAACACAGCATGCAGCAGTGAAG---GAAGAACCCTCTGTCACTTTTTGGTTTTGAGACCTTAGCTGAGCCATGTCCGTGAACCTCAGAGTCCTTATCTGCAAACGGGGGATAAAACACCCGACATTGGTTGTCCGGAGAATTGAGTGAGATGATATGTCATTGGCATATGCTCTCCACTCTGCAAATGGGAGCTGGTTTTGTTGGTGTGCATACAGCCTGAGGAGGGCCCTCACAGCTTACTCATTTC-CCCACCTTGCACCTTATACGTTGGCAAAC--AGGCCCAGCAAGCGAAAATGACTTGCCCAGGGTCGCACGGTGTGCAGAGCTGTAACTGCCCGGAGCTTGGCTTATCTTATGTCATAATGCCCACGAGCTGTGCCCCTTCATGGTAGCAGCCTTCCACCCCCGGCCCTCGCTCCCCAAAGGGGTGCCCAGAGCTGATGCCAGGCTTCTCCCCCTTCCTGCATCTGTCCCC-CACAG Crocidura_russula -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Equus_caballus GTAAACAGCTGGAGGCAGG-TTTTTGACCCGTACCACTGGGACTAATAGGTACTTTGCCCAGAGAGGGAAGTGAAGGCATGGGACAGCCTAGAGTGTTAGGCCGGGAAATCCCAGTGATCTGAACAGACACAGGTTGAGGAAGAGACGTGGAACTGCAAAATAGAATGTCGAACGGCGAAGGAAGCAGAGCCCTCTGTTACTTTTTGGTTTTGAGACCTTGGCCACGGCCCTTCTCCGAACTTCAGTGCCCTCATCTATAAACTAGGGCTATGATACCTGGTGCTGGCTGTTGTGGGGATTCAGTGAGCTGATATGTCATTGGCATATGCCTATCGCCCCATCAATGGGAGCTGGTTTTGTTGGTGTGCACACAGCATGAGAAGGGGGCTTACAGCTCGCCTCTTTCCCCCACTGTGCATTTTACACATTGGCCGACTGATGCCCAGAAAGAGAAGATGACTTGCCTGTGGTCACACAATGTGCAGAACTAGACCTGACTAGAACTGGGCTCATCTTATGTTGCGACGACCCCGGGCTGTGCCTCTTCATGGTAGCCTTCTGCCCTCCCTGGCCTTCACTCCCGGAAGATGTGTTCAGAACTGATGCCCCACCCCTCCCCCTTCTTGCTTCTCTGCCCACACAG Erinaceus_europaeus GTGAGCAGACAGGGCGGGGG----GGGGGGGGGTTGTGGGG-CTGACCGG----TCCCACAGAAAATGAAACAAAGTCATATGACAGCCTAGAGATTTACACCTGGAAATACTGGTGAGTTAAGCAGACACAGGTTGAGAAAGGGAGCTGGAACCACAGAGCAGAACATGG-ACAGTGAAGAAAGCAGAGCCTACTATTGTGTTTTGGTTTTGAGAACAGAGCCTGTTGGCTTTGCTGAACCTCAATGGCCTCATAACTAAGTGAAGGATAAGGTAGCTGGTGCCGGTAGCGCAGCGGGTTAAGCGCGGTGGCGGGGGATTGGTATAAGGATCCCACTCTGCTAGTGAGAATTGAGTTTACTGGTATGCACAGGGCATGTGAAGAGAACTCACAGCTTGCCTATATCCTGCACTGTGTATATTATACACTGACAAAC--AGGCCTAGAAAGAGAAAACAACTTG-CCACAGTCTCGCAATATACAGAGCTA----------------GGCTCATCTTT--TTGTGATGCCCAGGGGCTGTGCCTCCTCTTGGTAGCCTCCCTCTACCAAC---------TCCCAGGTGTTGC-------------------AACCTCCTCTCCCCGGCTTCTCTCCCAACATAG Felis_catus GTAAACAGGCCGGGCTGGGGTTTTTGACCTGTGCCACGGGG-CTGATGGGCACTTTGCCTAGAAAGGGAAATAAAGTCACGAGACAGCCTAGAGCCTTATGCCTGGAAATACCAGTGATATAACGAAACACAGGGTGAGGAGGGGATGTGGAATTGCAGAACAGAACATGGAACAGGGAAGACAGCAGAGCTGGCTATTA-ATTTTGGTTTTGAGACCTCAGCCAAGCCACTTCTGTGAACCTCAGTGTCCTTGTCTATAAACTGGGGATAAAATACCTGATGCTGGCTGTCAGGAGGATTAAATGAGATGATATATAATCAGCAAATGCTCACCACTCCGTAAATGGGAACTGGTTTTGTTGGTGT--GCACAGCATCAGAAGGGCACTTATAACTTACTTATTTCTCCCGTTGTGCATTTTATCCGGTGGCAAACTGAGGCCCAGTAAGAGAAAATGACTTGCCCAGGGTTACACACTGTGCAGAGCCTTAACTGACCGGAGCTGGGCTCGTCTCCTGTTGTGACACCCACGGGCTGTGCCTCTTCATGGTAGTCGCCTCCCCCACCCGGCCCTCACTCCCGGAAGGTGTGCCCAGAGCTGATGCCTGGCCTCTCCCCCTTCCTGCCTCTGTCCCCCGACAG Homo_sapiens GTAGGCAGGCAAGGGTGGGGGTTTTGACCTGCGCCACAGGGACTGATAAGCACTCTGCCTAGATTGGGGAACGACGTCCTGAG--AGCTTGGGATCTTATTCCGGGAATTACTAGTGATCTAAACAGACACACACTGAGGAAGAGATATGGAACTGCAGCATAGAACACGGCCCGGTGAAGCAAGCAGAGCCC----TTCATTTTTGGTTGTGAGAACGTGGGCAAGCCACTTCTCTGAACCTCAGTGTCCTCACCCATAAACTGGGGATAAGATACCTGGTGCTGGTTGTCCTGAGGATTAAATGAAGTAATA-------------------TCACTCCATAAA-GGGGACTCATTTTGTTAGAATGCACACAGCATGGGAA-GGAACTTGCCTCTTACCTATTTCCTTCACTGTGCATTTTATTCTTTGGTAAACTGAGGCCCCAAAAGAGGAAATGACTTGCCCA----------------AGAAATAGAGTTTCCCAAAGCTGGGCTCGTCTCATGTGGTG-TGCCCACAGGCTGTGCTTCTTCATGGTAGCCTTCTTCCCCGCCTGGCCTTCCATCGCAGAAGGTGTGCTCAGAGCTGATCAGCGTCCCCCCAGCCTTTCTGCATCTCTCCCAACACAG Macaca_mulatta GTAGGCAGGCAGGGGTTGGGGTTTTGACCTGTGCCACAGGGACTGATAAGCACTCTGCCTAGATCAAGGAACGAAGTCCTGAG--AGCTTGGAGTCTTATTTCGGGAATTACTAGTGATCTAAACAGACACACATTGAGGAAGAGATATGGAACTGCAGCATAGAACATGACATGGTGAAGCAAGCAGAGCCCTTCATTCATTTTTGGTTGTGAGAATGTGGGCAAGCCACTTCTTAGAACCTCAGTGTCCTCACCCATAAACTGGGGACAAGATACCTGGTGCTGATTGTCCTGAGGATTAAATGAGGTAGTA-------------------TCACTCCATAAA-GGGGGCTCATTTTGTTAGAACGTACACAGCACAGGAAGGGAACTTGCATCTTACCTATATCCTTCACTGTGCATATTATTCTTTGGTAAACTGAGGTCCCAAGAGAGAAAATGACTTGCCCA----------------AGAAATACAGCTGCCCAAAGCTGGACTCGTCTCATGTGGTG-TGCCCACAGGCTGTGCCTCTTCATGGTAGCCTTCTTCCCCGCCTGGCCTTCCATCCCAGAAGGTGTGCTCGGAGCTGATCACCGTCCCCC--GCCTTTCCGCATCTCTCCCAACACAG Myotis_lucifugus GTAAGCTGGCAGGGGTGGG-TTTTTGACCTGTGACCCACAGACTAATAGGCAGTTTGCCCAGAGATGGAAATGAAGTCCTGAAACAGCCTGGAGTCTTGGGCCCAGAGGTAACAGTGATCTAAACAGACACAGGCTGAGAGGAAAAGACATGACTGTAGAACAGAACATGGAACAGTGAAGCAAGCAGAGCTCTCTATTATTTTTTGGTTGTGAGACCTTGGCCTAGCCACTTCTCTGAACCTCAGT-------CCTGTCTATAGTAGATAAGATACCTGGTAGTGGTTGTCATGTGGGTTAAATGAGATGATATGTAATTGGCATATGTTCATCACTCCATAAATGCGAGCTGGTTTTATTGGAATGCACACAGTGTG-GAAGGGAACTTACAGCTTATCTGCTTC-CCCACTGGGCATTTGATTCATTGGCAAATTGAGGTCCAGAAAGAGAAAATGACTTGTCCACAGTCACACAATCTAGAGCGCTAGAATTGACTAGCACTGGGCTCGTCTTACGTTGTGAAACCCACTAACTGTGCCTCTTCATAGTAGCCTTCTTCCCCGC--GGCCCTCATTCCCAGAAGGTATGCCCAGAGCTGATGCCCCGTGCCACCCCTTCCCTGTTTCTCTCCC-ACAAAG Neomys_fodiens GTGAGCCTGTGGGGCGGGGGGATGCCCCCCGGGGCCCTGGGACTCGCGGGCACT------------------------------------------------------------------------------------------------------------------AGGCCCAGAGAGGGAGACCGCAGCCTCTGTTCCCCGTTGGCTTTGCAACACCA-----GCACTTGCTGTGAGTCTCGGCA-TCCCGGCTAGCAGCTGGGAACGGGATGCCGGGTGC----------------AGGCTGAGGTGAT------------CGTGCGTGTCTGTCCCTAAACAAGAGCTGGACTGGGCAGCAGGCATG----CTAAGGACAGAGCTGACCACGGCAGC-CCCCCCCCACTCTGCATGTTCTCCTTT----------GGCCCAGAACGAGCAGGC--CACAGCCCACACCAGACTGTGT-------------------------------------------AGACGTGGCGGCTGTGCACCTCCCTGAGCACTTCCTCCCCTTGCTCGCCCCCACTCCTACCCCCCACCCCCCATACTGACTCCTCTCGCCCCCCC---------------CACACACAG Pteropus_vampyrus GTAAGCTGGCCGAGGTGGG-TTTTTGACCCGTGCCACATGGACTGATAGGTACTTCATTCAGAGAAGGAATTGAAGTCGTGAGACAGCCTGGAGTCTTAGGCCTAGAAATACCAGGGATCTAAACAGACACAGGCTGAGGAAGAGACATGGAACT--AGAACAGAACATGGAACAGTGAAGAAAGCAGAGCCCCCT-----TTTCTGCTTTTGAGACCTTGGCCTAGCCACTTCTCCGAACCTCAGTACCTATATT---------GGGATAAGATACCTGGTCCTGGTTGTTGTGTGGATTAAATGAGA-GATATGGAATTGGCATATGCTTATCACTCCATAATTGGGAGCTGGTTTTGCTGG-------------TGGGAAAGGAACTTACAGCTTACCTATTTCCCC------------------------AACTGAAGCCCACACAGAGAAGATGACTTGCCCACAGTT------CATACAGAGTTAGAACCAACAAGAGTTGGGCTCGTCTTATGTTG-----CCCACCGAC--TACCTTTTCACAGTAGCCTTCTTCCCTCACTGGCCCTCACTCCCAGGAAGCGTGCCCAGAGCTGATGCCCTGCCGCTCCCC-----TGCTTCTCTCCCCATACAG Sorex_coronatus GTGAGC----------------------CCGGGGCCCTGGGACTCACGGTCACT------------------------------------------------------------------------------------------------------------------TGAGCCAGAGAAGGAACATGCAGCCTCTGTGCCTTGTCCACTTTGCAGCCCCA-----GCACTTCCGGGGCGTCTCAGTGGCCCCGGCTAGAGGCCGGGAGAGGGATGCCGGGGGC--------------ACAGCCAGAGGCGAT------------CATGCACATCTGTCCTGAAAC---AGCTGGCCGTGTCACTAGGCACGGAGTCCAGGTTCAGAGCTGGCAGCAGCCCCACCCCCCTGACCCTGTGTGGTCTCCTTTGGCAGACTAGGGCCCAGAAAGAGCAGGC--TTTGTCCCCAGGCACAC------------------------------------------------ACTCGCGGGAACTGGGTCCCTCCCTAATGGCCTTCCTCCCTTGCCTCCCCTCC----------------------------------------------------------------AG Tursiops_truncatus GTGAGCAAGGAGGGGTGGGATTTTTGACATGTGCCGCAGGGACTGATAGGCACTTTGACCAGATAGGGAAATAAAGTCATGAGACAGCCTGGAGTCTCATGCCTGGAAATGCCAGAGATCTAGA------CAGGCTGGGGAAAAGACATGAAACCGCAGGACAGAATGTGGAACAGTGAAGTACGCAGAGCCCTCTGTTATTTTTTGGTTTTGAGACCTTGGCCAAGCCACTTCTCTAAG-TTCAGTGTCCTTGCCTATGAACTAGGGATAAGATAGCTGGTGCTGGTTGTCGGGAGGATTAAATGAGATGCTATGTAATTGGCGTATGCTTGTCACTTCATAAATGGGAGCTGGTTTTGTTGGTAAGCATACAGCGTGGGGAGGGAACTCACAGCTTACCTGTTTCCCCCACTGTGCATCTTATACATTGGCAAACTGAGGCCCAGAAGGAGAAAATGCCTTCCCCGAGGTCACACAACGTACAGAGCTAGGACTCACCAGAACTGAACTCGGCTTAGGTTGTGACACCCGTGGGCTGTGCCTCTTCATGGTAGCCTTCTTCCCACCCCGGCCCTCACTCCCAGAAGGTATTCCCCGAGCTGACGCCCTGCCCTCCCCCCTTCCCGCTTCTCTCCCAACACAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23447] TITLE Neomys_GALNT5_intron_4; LINK TAXA = TaxaForAnalysisStep14251; DIMENSIONS NCHAR=577; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ailuropoda_melanoleuca GTAATACTGTCACCCCCCACGAGATACTTCTAAGTGAGTCTT----CAACAACAGCAAAAAGTACTGGTCATATTCCTAAAGTGCACATTTTTGCAAATCTAAGAAATACACAGTTCATCCATTTAAATAAATAGAAACACATAATAGATATCTTAGGATCAGAA---GTCAATCCAGTAGTTTATCTGATCATCA-AAATGCTTAACTTTTAATAACATTAAATCCTAATACTCATTGTCCAGTTCTTTCCTCTTTCTATTCAGCTGTACCTAAAATATTTATCTTCCTTAAGATTAGTTCATCTTTTTAAATATACATATGCTCCTAAATTGTTTTTTTCCCTCAAAAAT----AGAACATTATTAAAAGTAAAGTATAAGTTAAAAACTAGCAATCCAGCCCGTAAGTCACTAATGTAAGTTGTACTCATAAATTTGCTTGAAATGTTATTAAAAGTTTGTGGTAATCTAAAATCATTTGTGTAAGTTGTTTCATTCATTTGAACAAGACATGGTGTCAGATTGATTAAGTATGTATGATCTCAGGTAGCTCTTTTGTTTTTTTCCTG------ Bos_taurus GTAATATTGTCATATTCCACAGGATACTTCTAAGTGACTTTTTA---ACCAGTAGCAGAAGGTAGTGGTCATACTCCTAAAATGTACAACTTTGCAAATCTAAGTAATACATGGTTTATCTGTTTAAATAAATTGAAATAATTGAT--ATATCATGAGATCAAAGCAGATCTATCCAATTGTTTATTTGATCATCACAAATTCTTAACCCTAAATGTCAATAAATACTAATACTCAGTGTCCAGGACTCTCCTCTTTCTATACAGCTGAACACCAAATATTTATTTTTCTTAAGATTAGTTCTTCTTTTTATACACATGTATATTCTTAAGTAGTCTTTTCCCCCTCAAAATGGCCAGAATATTATTAAAAGAAAAGTAT--GTTAAAAGCAAGCAATCCAG---------CACTAATGCTAATTATATCCATATCTCTCATTGAAATGTTATTAAAGCTTTGTGGTGATCTAAAATCATCTTCGCAAGTTGTTTCGTCCACGTGCACAACACGTGGTGTCAGGCTGAT------TGAATGACCTCAGGTAGCATTTTTTTCCCTTGACTA-----G Canis_familiaris GTAATACTGTCATATTCCACAAGATACTTATAAGTGAGTCTT----TAACAGCATTAGAAAATACTGGTCATATTCCT-ATATGCAGATTTTTGCAAATCTAAGAAATCCACAGTTTATCCATTTAAATAAATGAAAACATATAATAGATATCTTGGGATCAGAG---GTCAATCAAATAGTTTATTTGATCATCA-AAATTCTTAACTCTTAATACCAATAAATCGTAACACTCATTATCCAGTTCTTTCCTCTTTCTATTCAGCTGTGCCTAAAATATTTATCTTCCTTAAGATTAGCTCATCTTTTTAAATATACATATGGTCCTAAATTGTTTTTTTCCCTCAAAAACTGTCAGAACATTATTAAAAGAAAAGTATAAGTTAAAAACTAGCAATCCAGCCAATTAGTCACTAATGCAAGTTGTACTCATAAAGTTGCTTGAAATGTCATTAAAAGTTTGTGATAATCTACAAACATTTGTATAAATTATGTCATTTATTTGAACAAGACATGATATCGGGTTGATTAAGTATGAATGATCTCAGGTAGCACTTTTGTTTTTGTCCTGGATTAG Crocidura_russula GTAATA-TGT----CTCAATAACATACTTCTAAGTGACTCTTTAAACATCAGGAGCAAAAATTAGTGGTAATTCTCCTAATATACACATTT----------------TAATTAATAAATATATTTAAATAAATAAAAATATGTGCTAGCTATATTGGAATCAGAACAGGCCTGCACAA-----TATTTTACCACCACTGCA--CTTTTCATTAATATCAATAAATTCTAATAAGCTTTACTTAGTTTTCTACCCTTTATTTTAAGCTAAATGCAAAACATTTATTTTACTTAAGTTTAGTTCTCCCCTCTTCATACATATACATTAT-----TGTGTTTTATTCTCAAAAGTGGTCAGAGCAATAGTAAGAGAAAATTATAAGTTAAAATAA---ACATCGAATAGTCAGTCACTCTAGCAAATTGTACATAATAATTTTCTTGAATGTTATTTTCAAAGTTGTTATGATCTAAAATCATATGCATACACTGTTTGATTCAATTAAACAAGACATGGCTTTGAGTTGGTGAAGCATTTATAATATCAGAATACACTTTTTTCTTC---CTACATTAG Equus_caballus GTAATATTGTCATACTCCATAAGATACTTCT----GAGTCTTTAACCAGCAGCAACGGAAAATACTGGTCATATTATTAACATGTGGG---GTGCAAATCTAAGAAATACATACTTTATCTATTTAAATAAATAGAAATATGTGATAGATATCTTGGGACAAGAGAAGGTCAATCCAATAATTTATTTGATCATCAATCATCATCAATCCTTAAGACCAGTAAATCCTAACACTCATTGTCCAGTTCTTTCCTCTTTCTGTTCAGCTGAACTCAAGATATTTATTTTCCTTCATATTAGTTCTTCTTTTTAAATATGTGTATGCTCCTAAATTGTTTTTTCCCCTGAAAAGTGACCAAAACGT--------------TATAAGTTAAAAGTAAGCAATCCAGCCATTTAGTCACTAATGAAAATTGTACTTATAAGTTTTCTTGAAATATTATTAAAAGTTTATGATGATCTAAAATCATATGCATAAGTTCTTTCATTCATTTGAACACAACATGGCGTCGGGTTGATTAAGTAGATATGATCTCAGGTAGCACTTTTGTTTATTTCCTGGATCAG Erinaceus_europaeus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Felis_catus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Homo_sapiens GTAATATTTACACATTCCACAAGATACTTTCAAGCACATCTTTAATCACAAGCAGCAGAAAGTGCTGAGTATATGCCTAATATGTGTGTTTTTTCAAATCCAAGACATATACAGTTTATCTACTTAAATAAATGGAAAAACATGGTCGATATCTTGGGATCAGAGTCTGCTGATGCAATAATCTATCTGGTCACTACAAATTCTTAACTCTAAATACCAATAAATCCTAATACTCATGACCT-AGTTTTTCCCCTTTATATTTAGCTGAACCCCAAATATTTATTTACCTCAAATTTAGTTCTTATTTCTAAGCGTATATGTGCTTTTAAGTTGTTTTTTTTCTTCAAAACTGGCTAGCATATTGTTATTATAAAAGTATAAGTTAAGCACAAAT----AAGCCAATCAGTTACTAATGCAAATTGTACTTGTAAACATTCTTGAACTATTATTAAAG----GTGGTGATCTAAACTCAT---CAAAAGTTGTTTCATTCATTTGATTACATCGTGAAGCCAAATCGATAAAGTATATATAATCCCAGATAACACTTTGTTTTTCTTCCTGGATTAG Macaca_mulatta GTAATATTGACACATTCCACAAGATACTTCTAAGCACATATGTAAACACAAGCAGCAGAAAGTGCTGAGTATATGCCCAATATGTGCATTTTTTGAAATCCAAAACATATACAGCT----TACTTAAATAAATGGAAAAGCATGGTCGATATCTTGGGATCAGAGTCTGCTGATGCAATAATCTATCTGGTAACTACAAATTCGTAACTCTAAATACCAATAAATCCTAATAGTTATTATCT-GTTTTTTCCCCTTTATATTTAGCTGAACCCCAAATATTTATTTGCCTCAAGTTTAGTTCTTATTTCTAAACACGTATGTGCTTCTAAGTTGTTTTTTTTCTTCAAAACTGGCCAGAACAGTATTAAAATAAAAGTATAAGTTAAGCACAAATAATCAAGCCAATTAGTTACTAAAGCAAATTGTACTTGTAAATGTTCTTGAACTATTATTAAAG----GTGGTGCCCTAAAATCAT---CATAAGTTGTTTCATTCATTTGACTACGTTGTGAAACCAAATTGATAAAGTATATATAATCCCAGATAACACTTTGGTTTTTTTCCTGGATTAG Myotis_lucifugus GTAATATTGTCATCTTCCACAAGATGCTTCTAAGTGAGTCTTTAACCAGCAGCAACAGAAAGTACTGATTACACTCGTCATGGGTGCATTTTTGCAAATCTAAGAAA--TACAGTTTATCCATTTAAATAAATGGAAATACATAATACCTATCTTGGGATCAGAGCAGGCGAATCTGT----TTATTTGATCATCACAAATTCTTAACCCTTGATAC-----------------CATTGTCCAGTTCTTTCTTCTTTGTATTCAACTGAACC-AAAATACCTATTTTCCTTAAAATTAGTTCTTATTTTTATATATATATATATAT---AATTTTCCACCCCCCTCAAAAATGGCCAGAATATTATTTAAATATAAGTTAAAAATAAAAATAAACAATTCAGCCAACTGGTCACTAATGCAAATTGTACTTATAAATTTTCTAGAAATGTTATTCAAAGTTTATAATAATCTAAAGTCATCTGCATAAGTTGTTTTATTCA-TTAAACAAGACATGGCATTGGGTCAGTTAAGTATGTATGATCTCAGGTAGCACTTTTGGTTTTTCCCTG------ Neomys_fodiens GTAATA-TGTCAGGCTCCATAAGATACTTCTAAATGAGTCTTTAAACAACAGGTGAAAAAAGTAGCAGTAATACTCCTAATACATACATTTTTGAAAATCTAAATACTGCTTAACCATTTAATTT---TAAATGAAAATATGTGATAG{CG}TATCTTGGAAATAGAACAGGTTTGCACAGTA-----------------------TTTGTCCTCACTATCAATGAATTCTAGTATGCATTGTTCAGTTTGTTCCTCTTTACATTTAGATTAATCCTAAATATTCATTTGCCTTGGGATCAATCCCTGGCATCTTATATAAACATGTTA------TATATTTTATCCACAAAAGTGGCCAGGCCACCATT------AAAATATGAGTTTAAAGCAAGCAAGCCAGACTATCAGTCACTATTGAAAATTGTACTTAATATTTTTCTTGAAAGTTACTCTGAAAGTTGCAATGATTTAAAATGATATGCATAAACAGTTTCATTCAATTGAACAAAA-ATGGCTATAAGCGGGTGAAGCATGCATAATCTCAGG{AG}GACACTTTTCTCCTC----TATATTAG Pteropus_vampyrus ---GTAATATCATATTCCACAAGATACTTCTAAGTGAGTCTTTAGGCAGCAGTAGCAGAAAGTACTGGTCATACTCCTAATATGTACATTTTTGCAAACCTAAGAAATACACAGTTTATCCATTTAAATAAATGGAAATATATGATAGAAATCTTGAGATCAGAGCAGGTCGATCTAT----TTATTTGATCATCACAAATTCTTAACCCTTAATACCAATAAATCCTAAAATTCATTATGCGGTTTTTTCCTCTTTCTATTCAACTGAAACCAAAATATTTATTTTTCTTAAGATTAGTTGTTCTTTTTAAATA--TATATGCTTATAAGTTGTGTTTTTTTTCTCAAAATGGCCAGAATATTTTTTAAATAAAAGTATAAGTT-AAAATAAGCAATAAGGCCAATTAGCCACTAATGCAAATTGTACTCATAAATTTTCTTGAAGTGTTATTAAAAGTTTATGATGATATAAAATCATGTGCATAAGTTGTTTTATTTATTTGAACAAGACATAGCATCGGGTCAATTAAGAACGTATGATCTCAGGTAACGCTTTTGTTTTTTTCCTGGATTAG Sorex_coronatus GTAATA-TGTCCTATTCCATAAGATATTTCTAAGTGAATATTTAAGTAGCAGAAGCAAAGAGTAGTGGAGATCTACCATATGTGTACATTTTTGCAAATCAAATGAATA---ATTTTTTTCATTTAAATAAATGAAAGTATGTGATAGCTATCTTGGAATTAGAACTGATCTGCACAG-----TATTTTATCACCACAGAA--TTTGTCTTCAATACTAATGAATTCAAATATGCATTGTTCAGTTTTTTCCACTTTACATTTGGCTAAACCTAAAATACCTATTTCCCTTATGTTTAGTTTGCTCTTT-GCATAAATATATGTTAT-----TACATTTTATTCACAAAAGTGGATA-------CTTAAGAGAAAGATATAAGTTTAAAGCAAGCACTCCAGACTGCCAATTAGTATTGAAAACTGGACTTAATATTTTCCTTGAACATTACTTTTACAATTGTGATGATTTAAAATCATCTATATAAACCTTTTCATTCAATTGAACAAGAAATTACTTTGAGTTGGTAAAGCATGTATAATCTCAAGAGACACTTTTTTTCTT-TCCTACATTAG Tursiops_truncatus GTAATATTGTCATATTCCACAAGATACTT--AAGTGAGTTTT----AACCAGCAGCAGAAAGTACTGGTCATACTCCTAATATGTACATTTTTGCAAATCTAAGTAATACACAATTTATCTGTTTAAATAAATGGAAATACATGATAGATATCTTGAGATGAAAGCTGATCAATCCAA----TTATTTGATCATCACAAATTCTTAACCCTTAATGCTAATAAATACTAATACTCATCGTCCAGGTCTTTCCTCTTTCTATTCAGCTGAACCCCAAATATTTATTTTCCTTAAGATTAGTTTTTCTTTTTATACACATATATATTCTTAAGTGGTTTTTTTTCCTCAAAAATGGCCAGAACATTATTAAAAGAGAAGTGTAAGTTAAAAGTGAGCAATCCAGCCAGTTAGTCACTGATGCAAATTATACTCATACATTGTATTGAAACGTTGTTAAAAGTTTGTGATGATCTAAAATCATCTGCGTAGGTTGTTTCATTCACTTGCACAAGACATGATGTCGGGTTGGTTAAGTGTGTATGATCTCAGGTAGCACTTTGGTTTTTTTCCTGGACTAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23446] TITLE Neomys_CST6_intron_1; LINK TAXA = TaxaForAnalysisStep14251; DIMENSIONS NCHAR=454; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ailuropoda_melanoleuca ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Bos_taurus GTGCGGCCGACGGGGGGAGGGGAGGCGAGCGCGGCCCCA-GCCGGGCCCAGATGGAGGGGGCGACT-AGAGTAATCAGGGCATCTTAATACAACATTTTCAAAATCCAATTAATGTCAAAAGTCCATGCGGAGCAGAATCTCAGAATTTCAATAAGGTTCAACCCTGGGCCTGG-----------------------------TCCTGAGGCGGATTGGGGTGCGAGGTGAGGGAGAAGGGGCAGC----------GTGTGGACTTGGTCTCAGGCTCCTGCCTGGCCCAGGCTCTGCCCGCCTCACCACAGGACCCCCACCAGAACTCCCCATCTCAGGTTTGAATCCAAAGG-CGGTGTGCTGGCTATGCCCAGGGGGGGTGATGGGGGGGAGGTGAGAGGCCCAGGCAGATGGTGGCTGAGATGGCCCAGCTTTGCCCCCTCTCCACCGCC Canis_familiaris GTGTGAGGGGTGGGGTGGTGCAAGACCAGTGCGGCATTC-GCAGGTGCCAGGTTAAAGGGATGCCACAGAGTATTCAGGACACTTTAATACAATGTTTTTTTAGTTCAATTAATGCCACAAATTT---ATGAACAACACATCGATATTTCAATAGGATCTAGCCCTGTACACAGC-GGCTCGCTAGCCTCAAGGT-GCTCCTGCTCTGGGGTGGATTGGGGAGACGAGTGAGGGAGATAGGGCAGTGGGCTTCAGGCTGCACCCCTGGTCTCAGCTTCCTGCGTGGCCCAGGCCTCTGCTTGTCTTCCCAGGAATCCCCACCAGAACTCCCCATCCAGGGTCTGAATCCCGAGGCCAGTGTGCTGAATGTG-------------------GAGAGGTGAGAGGTCCGGGTCAAGGGCA-CCAGAATCCCTGACCTGCTCCTGTCCTCCATCCCC Crocidura_russula ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Equus_caballus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Erinaceus_europaeus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Felis_catus GTGTGGGCGGGTCAGGGGCGCCAGGCCAGCAGGGCTTTCAGCCGGTGCCAGGTCGAGGGGGTGCCACAGAGTAATAGGGACATTTTCATACGATGGTTTTTAAATCGGATTAATGCCAAGAATTCATTATGAACGACCTATCCAGCTTTCGACGGGATCCAGCCCT----------GTCTCACTAGCCTCACGGTAGCCCCCGCCCTGGGGCGGACTGGGGAGAGGAGTGAGGGAGATGGGGCGGTGGGCTTCAGGGTGCACACCTGGTCTCAGCTTCCTGTGTGGCCCGGGCCTCCGCCCCTCTCCCCAGGGGTCGCCACCAGAACTCCCCATCCAGGGTCTGAATCCCGAGGCCAGCATGCCGAATGTG-------------------GAGAGGGGAGAGGTCTGGGTCTGGGGTAGCCGGTGCCCCTCACCCGCTCCTGCTCTCCCTCCCC Homo_sapiens GTGCGGCGGGCGGGGTGCTGCCAGATGGGGGAGGCCACAGGCGCTGCGTGCATGAAGGGGGCCTAA-AGCGCAATCGGGATATTTTCATGCAATATTTTAAAAATCGAATTAATGCTAAAACTCCACGATGGAC-AACCATCTAAATTTCGACATAATTAAACCCTGTACCTGCCTTCCTGGCTTGCCTGGTCCTAGTCTCTGCCCTGGGGTGGATCGGGGAGGAGGGAAGGCAGGTGGGGACAGTGGGCCCCTAGGGGCATGTCTGGCCAAGGCTGCTGGTGGGGCTCAGCCTCCAGGCCTCTCCACCCTCCATCCCCACCAGAACTCCCCCCACCCCGTCTGAATCATCCCCCCTGAGTGCCT--------------GGGCAACAGGAAAGAGGTGAGAAGTGAGGATCAAGGG---TCAAGACCCCTGACCTGCCCCTACCCTATGCCCCC Macaca_mulatta GTGCGGCGGGCGGGGTGCTGCCAGGCGGGGGAGGCCACAGGCGCTGCTTGCATGGAGGGGGCCCGA-AGCGCTACCAGGATATTCTCATGCAATATTTAAAAAATCGAATTAATGCCAAAACTCCACAATGGGC-AGCCATCTAAATTTCGACATCATTCAATCCTGTACCTGCCTTCCTGGCTTGCCTGGTCCTAGTCTCTGCCCTGGGGTGGATCGGGGAGAAGGGAAGGCAGATGGGGACAGTGGGCCCCCAGGGGCATGTCTGGCCCAGGCTGCTGGTGGGGCTCAGCCTCCAGGCCTCTCCTCCCTCCACACCCACCAGAACTCCGGACCCCAGGTCTGAATCATTCCTCCTGAGTGCCT--------------GGGCAACAGGAGGGAGGTGAGAAGTGAGGATCAAGGG---TCAAGACCCCCGACCTGCCCCTACCCTATGTCCCC Myotis_lucifugus GTGCGGCTGGCGG-------CAGAGCGAGGGGGGCGCGCAGCCGGGCCCAGATGAAGGCAGAGTCACAGAGTAATCAGGAGAGTCCACCAATATATTTTAAAAATTGAATTAATGCCAAAATTTCACAATGAACCAAATATCTAAATTTCAATAGAATCTACCCCTGTGCTCAGCTACCTCACCAGCTTCACACCAGTCCCTTTGCTGCAGCTAATTGGGAAGGGAGGTGGGGGAGACGAGGCAGTGGGCTTCAGGGGGTGCGCTTG----CAGCCTCCTGCCTGGCCGGGGCCTCGGCCTCTCCCCCGGGGA----------------CCTGCCCCAGGTCTGAATCCCCAGGCCAGTGTGCTG---GTGGCCAGGGGGGGAGATGGGA-GGCGGTGAGA----GAGGCGGGAGGGCGCCAGCACCCCTGACCTGC-CCTGCCCTCCGTCCCA Neomys_fodiens GTGAG---------------CGGGGGGACGGCGGACCCG---GGAGCCCAAGTGATGGGGAGCACACGATGG-------------------------------TCCAGAACGCTGCGGGGATCCG-------------------------GAC-------------------------------------------------------GGGCGCCCTGCGGGGCGGGCTGCAGGGGAGTGGGGTGGGGGCTTCACG-----------CCGCAGCGCTCCCACAGGCCCTCGGTTTT----------------------------------------------------------CCAGGGGTCCCCCGCACCCTTGGGGGAGAGTTGGGAGAGAGAC---------------AAGGGCGCTGGCGCCTCTCACT----CCTGCACCCGCCCACA Pteropus_vampyrus GTGCGGCTGGCGG-------CAGGGAGAGGAGAAGAGCCCTCAGCGCCCAGATTAAGGGGGAGCCACAAAGCAAGCAGGATATTTTAACAATATATTTTAAAAACTGAATTAATG-------------ATGAACAAAATATCTAAATTTTGACAGGATGCACCTCTGTGCATAGCTACCTCACCAGTCTCACATGGGCCCTGGCCT----GCGGGTTGCTGGGGAGAGTGAGGGGGAT-GAGCGGTGGGCTTCAGGGTGAGCCCTTGGTCTTAGCCCCCTTCGTGGCCCAGACCTCTGCCTCCCATCCCAGGGATCCCCAAAAGAATGTTCTGTCCCAGGTCTGAGTCCCAAGGCCAGTGTGCTGGACGTGTCTAGGGGGGGAGATGGGAGAGAGGTGACTGGTGAGGGTCAGGGGTAGCCGGCACC-CTGACCTGCCCCTGCCCTCTGTCCCA Sorex_coronatus ---------------------------GTGAGGGCTCAG---GGAGCCCCAGTGATGGGGACCGTTCCGCGGGGAC-------------------ATTGCAAACGTGGATCTTTGCCGGAGCCCC-------------------------GAC-------------------------------------------------------GAGCGCCCTGGAGTG----------------GGGCTGTGGGCTTCATG-----------GCTCTGGTCTCC------CCCTGGGGTCC----------------------------------------------------------CCAGCACCCTGCAGGTATCTGGGCGGAGGGTTGGGACAGAGACGAG-GGGCCTGCTCAAGGGGGGTTGGCACCCCTCACC----CGCCCGCCTCTCCCCC Tursiops_truncatus GTGCGGCCGGCGGGGCGGGGGGAGGCGAGCGCGACCCCA-GCCGGGCGCAGATGGAGGGGGCGACACAGAGTAATCAGGGCATTTTATACACATATTTTTCAAATCCAATTAATGCCAAAACTTC-TTGCGGACAGAATATCTAAATTTCAATAAGATCCAACCCTGTGCATGGCTACCTCACTAGCCTCACACTAGTCCCTGCCGGGGGGCGAGTTGGGGAGGGGGGAGAGGGAGATGTGGCAGT----------GTGTGGACTTGGTCTCAGCCTCCTGCGTGGCCCAGTCTCT-GCCCCTCTCCCCAGGGCTCCCCACCAGAACTCCTCCTCCCAGACCTGAATCCCAAAGGCAGTGTGCCGGATATGTCCTAGGGGGGAGATGGGAGGGAGGTGAGAGGTCCAGGTCAAAGGTTGCCGGCACCCCTGACCTGC-CCCCACCTCTGCCTCA ; END; [ The following blocks are output data for analysis step 14251 ] BEGIN TREES; TITLE Introns_Bayesian_tree; LINK TAXA = TaxaForAnalysisStep14251; TREE Introns_Bayesian_tree = [&R] (((((Bos_taurus:53.861295489177465,Tursiops_truncatus:53.861295489177465):26.384264410056844,(Equus_caballus:79.6466806932503,(Felis_catus:44.89895497624211,(Canis_familiaris:38.213758464007526,Ailuropoda_melanoleuca:38.213758464007526):6.685196512234583):34.747725717008194):0.5988792059840051):0.8065294489363168,(Myotis_lucifugus:73.79290691863862,Pteropus_vampyrus:73.79290691863862):7.259182429532004):5.910895444141033,(((Neomys_fodiens:38.156821095835134,Sorex_coronatus:38.156821095835134):14.56386208679129,Crocidura_russula:52.72068318262642):30.13080160800991,Erinaceus_europaeus:82.85148479063633):4.111500001675324):5.268724950041133,(Macaca_mulatta:24.21751321404129,Homo_sapiens:24.21751321404129):68.0141965283115); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr76710] END;