#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 08, 2024; 7:08 GMT TreeBASE (cc) 1994-2008 Study reference: Nilsson R., & Hallenberg N. 2003. Phylogeny of the Hypochnicium punctulatum complex as inferred from ITS sequence data. Mycologia, 95(1): 54-60. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S863] [ The following blocks are input data for analysis step 1439 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1439; DIMENSIONS NTAX=20; TAXLABELS Hypochnicium_albostramineum_1772 Hypochnicium_albostramineum_1865 Hypochnicium_albostramineum_269 Hypochnicium_cremicolor_160 Hypochnicium_cremicolor_2151 Hypochnicium_geogenium_2052 Hypochnicium_punctulatum_1065 Hypochnicium_punctulatum_1203 Hypochnicium_punctulatum_1362 Hypochnicium_punctulatum_1794 Hypochnicium_punctulatum_1921 Hypochnicium_punctulatum_2833 Hypochnicium_punctulatum_938 Hypochnicium_subrigescens_1966 Hypochnicium_wakefieldiae_1709 Hypochnicium_wakefieldiae_2194 Hypochnicium_wakefieldiae_2383 Hypochnicium_wakefieldiae_2437 Hypochnicium_wakefieldiae_2710 Hypochnicium_wakefieldiae_2755 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M321] TITLE ITS_rDNA; LINK TAXA = TaxaForAnalysisStep1439; DIMENSIONS NCHAR=638; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Hypochnicium_albostramineum_1772 TT-GTAGCTGGCCATGGTTTTGGCATGTGCACGCCCTGGT--AATCCAAATTAC-TTACAC--CTCTGTGCACTATTATGTGGGATTGATGAAGC--TTC-GGTGC-TTGCGCTGA--TGGTATTATCATT--CTCATGTTTTCATAT----------ACACTCT-TCAG-TATAGAATGTTAT--TGCGTCAAACGCATCTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGG-TTCT--GTTAAAAGAA-CTCAG--TTGGACTTGGATATGGAGG-TTTCTTGCTGGTCT--TCATAGA---TCGGCTCCTCTG-AAATACATCAGCATGAATAGAAC-GC---TGTTTT--CAGTGTGATAATTATCTACACTGTGA----TTTGGC-CTTGCTATTTT--TG-CTTCTAATCGTCTGCATTGTTCAGACAA-TTTT-ATT-GACA-TCTGACCTCAAATCA-GGTAGGGCTAC{AC}CGCTGGAA Hypochnicium_albostramineum_1865 TT-GTAGCTGGCCATTGTTTTGGCATGTGCACGCCCTGGT--AATCCAAATTAC-TTACAC--CTCTGTGCACTATTATGTGGGATTGATGAAGC--TTC-GGTGC-TTGCGCTGA--TGGTATTATCATT--CTCATGTTTTCATAT----------ACACTCT-TCAG-TATAGAATGTTAT--TGCGTCAAACGCATCTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGG-TTCT--GTTAAAAGAA-CTCAG--TTGGACTTGGATATGGAGG-TTTCTTGCTGGTCT--TCATAGA---TCGGCTCCTCTG-AAATACATCAGCATGAATAGAAC-GC---TGTTTT--CAGTGTGATAATTATCTACACTGTGA----TTTGGC-CTTGCTATTTT--TG-CTTCTAATCGTCTGCATTGTTCAGACAA-TTTT-ATT-GACA-TCTGACCTCAAATCA-GGTAGGGCTACCCGCTG-AA Hypochnicium_albostramineum_269 TT-GTAGCTGGCCATTGTTTTGGCATGTGCACGCCCTGGT--AATCCAAATTAC-TTACAC--CTCTGTGCACTATTATGTGGGATTGATGAAGC--TTC-GGTGC-TTGCGCTGA--TGGTATTATCATT--CTCATGTTTTCATAT----------ACACTCT-TCAG-TATAGAATGTTAT--TGCGTCAAACGCATCTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGGG-TCT--GTTAAAAGAA-CTCAG--TTGGACTTGGATATGGAGG-TTTCTTGCTGGTCT--TCATAGA---TCGGCTCCTCTG-AAATACATCAGCATGAATAGAAC-GC---TGTTTT--CAGTGTGATAATTATCTACACTGTGA----TTTGGC-CTTGCTATTTT--TG-CTTCTAATCGTCTGCATTGTTCAGACAA-TTTT-ATT-GACA-TCTGACCTCAAATCACGGTGGGGCTACCCGCTGG-A Hypochnicium_cremicolor_160 TT-GTAGCTGGCCATTGTTTTGGCATGTGCACACCTTGGTATAATCCAAATTACATTACACACCTCTGTGCACCATTTCGTGGGATTGAAGG-GTAATGAAGGAGAATTGCGCCTAGCTCTTCTTTTCTTTGCCTGA-ATTTTC-CATGTCTTTGTATATACTCTA-CAGTTTTAGAATGTTTAATTGCGTTGAACGCATTT-ATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCATTCTGAGTTTTT-G--AAAAGAAAC-TTGT-TTGGAATTGGACTTGGAGGCTTTCT-GTTGGTTACACT-TTGTTAATCGACTCCTCT-AAAATGCATTAGCAGGAAC-GAAGTGC---CATCTT--CAGTGTGATAATTATCTGCACTGTGG--AATGGTGCTCGGAAGTTC----TGGCTTCTAATTGTCTAT-TCTCTTAGACATTCTTT-AT--GACA-TCTGACCTCAAATCA-GGTAGGATTACCCGCTG-AA Hypochnicium_cremicolor_2151 TT-GTAGCTGGCCATTGTTTTGGCATGTGCACACCTTGGTATAATCCAAATTACATTACACACCTCTGTGCACCATTTCGTGGGATTGAAGG-GTAATGAAGGAGAATTGCGCCTAGCTCTTCTTTTCTTTGCCTGA-ATTTTC-CATGTCTTTGTATATACTCTA-CAGTTTTAGAATGTTTAATTGCGTTGAACGCATTT-ATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCATTCTGAGTTTTT-G--AAAAGAAAC-TTGT-TTGGAATTGGACTTGGAGGCTTTCT-GTTGGTTACACT-TTGTTAATCGACTCCTCT-AAAATGCATTAGCAGGAAC-GAAGTGC---CATCTT--CAGTGTGATAATTATCTGCACTGTGG--AATGGTGCTCGGAAGTTC----TGGCTTCTAATTGTCTAT-TCTCTTAGACATTCTTT-AT--GACA-TCTGACCTCAAATCA-GGTAGGATTACCCGCTGGAA Hypochnicium_geogenium_2052 TT-GTAGCTGGCCAT-AACCTGGCATGTGCACACCTTGGT-T-ATCCAAATT-C-TTACAC--CTCTGTGCACC-TTTCATGGGATAGTTGAGGCTGT-C-GGTTTTATT-ACTGA--TGGTTTCTTCCAT--CTCGTGTCTTTACAT----TT----ACACGCT-TCAG-TATAGAATGTTACC-TGCGTTTAACGCATTAT-AATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-C-AA-TACT--GTCAAAAGTA---TTGGATTGGTATTGGATGTGGAGG-ATTATTGCTGGTCTCTTTATTGAGTATCAGCTCCTCTG-AAATGCATTAGTGTGAAT-GTTTACCGAGCATTTTCTCAGTGTGATAATTATCTACGCTGTGGCTGC-TTGGATCTTATAAATTT-CATGCTTCAAACCGTCTGCATTA-GTGGACAA--TTT-ATTTGACAATCTGACTTCAAATCA-GGTAGGGCTAC{AC}CGCTGGAA Hypochnicium_punctulatum_1065 CT-GTTGCTGGCCATTATTCTGGCATGTGCACGTCTTGGC--AATCCAAACCA--TTACAT--CTTTGTGCACTTTAATGTGGGATTGATGAGGTCATAT-GGTGC-TTGCACTTG--TGGCATTGTCATT--CTCATATCTTCACAT----------AAACG-T-TTAGTTATAGAATGTTAC--TGCGTAAAACGCATTTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGGGTTCT--GTCACCGGAATTATGG--T-GGACTTGGATGTGGAGG-TTT-TTGCTGGTCT--TTGATGA---TCAGCTCCTCTG-AAATGCATCAGCATAAACACTTT-GC---TGCTCT--CAGTGTGATAATTATCTGCACTGTGG----TAAAGCTCTTGAGTTAT---TG-CTTCTAATTGTCTGT-TTGCTCAGACAA-CTTTCATT-GACA-TCTGACCTCAAATCA-GGTAGGACTACCCGCTG-AA Hypochnicium_punctulatum_1203 CT-GTTGCTGGCCATTATTCTGGCATGTGCACGTCTTGGC--AATCCAAACCA--TTACAT--CTTTGTGCACTTTAATGTGGGATTGATGAGGTCATAT-GGTGC-TTGCACTTG--TGGCATTGTCATT--CTCATATCTTCACAT----------AAACG-T-TTAGTTATAGAATGTTAC--TGCGTAAAACGCATTTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGG-TTCT--GTCACCGGAATTATGG--T-GGACTTGGATGTGGAGG-TTT-TTGCTGGTCT--TTGATGA---TCAGCTCCTCTG-AAATGCATCAGCATAAACACTTT-GC---TGCTCT--CAGTGTGATAATTATCTGCACTGTGG----TAAAGCTCTTGAGTTAT---TG-CTTCTAATTGTCTGT-TTGCTCAGACAA-CTTTCATT-GACA-TCTGACCTCAAATCA-GGTAGGACTACCCGCTGGAA Hypochnicium_punctulatum_1362 CT-GTTGCTGGCCATTATTCTGGCATGTGCACGTCTTGGC--AATCCAAACCA--TTACAT--CTTTGTGCACTTTAATGTGGGATTGATGAGGTCATAT-GGTGC-TTGCACTTG--TGGCATTGTCATT--CTCATATCTTCACAT----------AAACG-T-TTAGTTATAGAATGTTAC--TGCGTAAAACGCATTTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGG-TTC-GTGTCACCGGAATTATGG--T-GGACTTGGATGTGGAGG-TTT-TTGCTGGTCT--TTGATGA---TCAGCTCCTCTG-AAATGCATCAGCATAAACACTTT-GC---TGCTCT--CAGTGTGATAATTATCTGCACTGTGG----TAAAGCTCTTGAGTTAT---TG-CTTCTAATTGTCTGT-TTGCTCAGACAA-CTTTCATT-GACA-TCTGACCTCAAATCA-GGTAGGACTACCCGCTGGAA Hypochnicium_punctulatum_1794 CT-GTTGCTGGCCATTATTCTGGCATTTGCACGTCTTGGC--AATCCAAACCA--TTACAT--CTTTGTGCACTTTAATGTGGGATTGATGAGGTCATAT-GGTGC-TTGCACTTG--TGGCATTGTCATT--CTCATATCTTCACAT----------AAACG-T-TTAGTTATAGAATGTTAC--TGCGTAAAACGCATTTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGG-TTCT--GTCACCGGAATTATGG--T-GGACTTGGATGTGGAGG-TTT-TTGCTGGTCT--TTGATGA---TCAGCTCCTCTG-AAATGCATCAGCATAAACACTTT-GC---TGCTCT--CAGTGTGATAATTATCTGCACTGTGG----TAAAGCTCTTGAGTTAT---TG-CTTCTAATTGTCTGT-TTGCTCAGACAA-CTTTCATT-GACA-TCTGACCTCAAATCA-GGTAGGACTACCCGCTGGAA Hypochnicium_punctulatum_1921 -T-GTTGCTGGCCATTATTCTGGCATGTGCACGTCTTGGC--AATCCAAACCA--TTACAT--CTTTGTGCACTTTAATGTGGGATTGATGAGGTCATAT-GGTGC-TTGCACTTG--TGGCATTGTCATT--CTCATATCTTCACAT----------AAACG-T-TTAGTTATAGAATGTTAC--TGCGTAAAACGCATTTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGGGTTCT--GTCACCGGAATTATGG--T-GGACTTGGATGTGGAGG-TTT-TTGCTGGTCT--TTGATGA---TCAGCTCCTCTG-AAATGCATCAGCATAAACACTTT-GC---TGCTCT--CAGTGTGATAATTATCTGCACTGTGG----TAAAGCTCTTGAGTTAT---TG-CTTCTAATTGTCTGT-TTGCTCAGACAA-CTTTCATT-GACA-TCTGACCTCAAATCA-GGTAGGACTACCCGCTGGAA Hypochnicium_punctulatum_2833 CT-GTTGCTGGCCATTATTCTGGCATGTGCACGTCTTGGC--AATCCAAACCA--TTACAT--CTTTGTGCACTTTAATGTGGGATTGATGAGGTCATAT-GGTGC-TTGCACTTG--TGGCATTGTCATT--CTCATATCTTCACAT----------AAACG-T-TTAGTTATAGAATGTTAC--TGCGTAAAACGCATTTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGG-TTCT--GTCACCGGAATTATGG--T-GGACTTGGATGTGGAGG-TTT-TTGCTGGTCT--TTGATGA---TCAGCTCCTCTG-AAATGCATCAGCATAAACACTTT-GC---TGCTCT--CAGTGTGATAATTATCTGCACTGTGG----TAAAGCTCTTGAGTTAT---TG-CTTCTAATTGTCTGT-TTGCTCAGACAA-CTTTCATT-GACA-TCTGACCTCAAATCA-GGTAGGACTACCCGCTG-AA Hypochnicium_punctulatum_938 CT-GTTGCTGGCCATTATTCTGGCATGTGCACGTCTTGGC--AATCCAAACCA--TTACAT--CTTTGTGCACTTTAATGTGGGATTGATGAGGTCATAT-GGTGC-TTGCACTTG--TGGCATTGTCATT--CTCATATCTTCACAT----------AAACG-T-TTAGTTATAGAATGTTAC--TGCGTAAAACGCATTTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGG-TTCT--GTCACCGGAATTATGG--T-GGACTTGGATGTGGAGG-TTT-TTGCTGGTCT--TTGATGA---TCAGCTCCTCTG-AAATGCATCAGCATAAACACTTT-GC---TGCTCT--CAGTGTGATAATTATCTGCACTGTGG----TAAAGCTCTTGAGTTAT---TG-CTTCTAATTGTCTGT-TTGCTCAGACAA-CTTTCATT-GACA-TCTGACCTCAAATCA-GGTAGGACTACCCGCTG-AA Hypochnicium_subrigescens_1966 TT-GTAGCTGGCCGT-AAACTGGCATGTGCACACCTTGGT-T-ATCCAAATT-C-CTATAC--CTCTGTGCACT-TTTCATGGGATAGTTGGGGTTGTGGGGGTACTATGTATTCCTGTAG-CTTTTTCTGTTTCATGCTTTACACAT----TT----ACACGCT-TCAG-TATAGAATGTTAAC-TGCGTTGAACGCAATAT-TATATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAACCCATTC-AG-TATT--GTCAAA-GATA--TTGAACTGGGCTTGGATGTGGAGG-AAATTTGCTGGTCTCAG-ATTGAGAATCAGCTCCTCTG-AAATATATTAGTGTGAAT-GTTCACCAAGCATTCTCTCAGTGTGATAATTATCTACGCTGTGAGTGC-TTAGGT{AT}AAAATTGAATTCATGCTTCAAACTGTCTACAACA-GTAGACAA-TCTT--TT-GACA-TCTGACCTCAAATCA-GGTAGGACTACCCGCTG-AA Hypochnicium_wakefieldiae_1709 TT-GTAGCTGGCCATTATTTTGGCATGTGCACGCCCTGGT--AATCCAAATCAT-TTATAC--CTCTGTGCACTATTATGTGGGATTGATGAGGC--TTT-GGTGC-TTGCGCCAA--TGGCATTATCATT--CTCATG-TTTCACAT----------ACACTCT-TTAG-TATAGAATGTTAT--TGCGTTAGACGCATCTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGG-TTTT--GTCAAA-GAAACTTGG--TTGGACTTGGATATGGAGG-TTTCTTGCTGGTCT--TTACTGA---TCGGCTCCTCTG-AAATACATCAGCATAAATGGAAC-GC---TGTTTT--CAGTGTGATAATTATCTACACTGTGA----TTTGGC-CTTGCTATTTT--TG-CTTCTAATTGTCTGCAT-GAGTAGACAA-CTTT-ATT-GACA-TCTGACCTCAAATCA-GGTAGGGCTACCCGCTGGAA Hypochnicium_wakefieldiae_2194 TT-GTAGCTGGCCATTATTTTGGCATGTGCACGCCCTGGT--AATCCAAATCAT-TTATAC--CTCTGTGCACTATTATGTGGGATTGATGAGGC--TTT-GGTGC-TTGCGCCAA--TGGCATTATCATT--CTCATG-TTTCACAT----------ACACTCT-TTAG-TATAGAATGTTAT--TGCGTTAGACGCATCTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGG-TTTT--GTCAAA-GAAACTTGG--TTGGACTTGGATATGGAGG-TTTCTTGCTGGTCT--TTACTGA---TCGGCTCCTCTG-AAATACATCAGCATAAATGGAAC-GC---TGTTTT--CAGTGTGATAATTATCTACACTGTGA----TTTGGC-CTTGCTATTTT--TG-CTTCTAATTGTCTGCAT-GAGTAGACAA-CTTT-ATT-GACA-TCTGACCTCAAATCA-GGTAGGGCTACCCGCTGGA- Hypochnicium_wakefieldiae_2383 TTTGTAGCTGGCCATTATTTTGGCATGTGCACGCCCTGGT--AATCCAAATCAT-TTATAC--CTCTGTGCACTATTATGTGGGATTGATGAGGC--TTT-GGTGC-TTGCGCCAA--TGGCATTATCATT--CTCATG-TTTCACAT----------ACACTCT-TTAG-TATAGAATGTTAT--TGCGTTAGACGCATCTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGG-TTTT--GTCAAA-GAAACTTGG--TTGGACTTGGATATGGAGG-TTTCTTGCTGGTCT--TTACTGA---TCGGCTCCTCTG-AAATACATCAGCATAAATGGAAC-GC---TGTTTT--CAGTGTGATAATTATCTACACTGTGA----TTTGGC-CTTGCTATTTT--TG-CTTCTAATTGTCTGCAT-GAGTAGACAA-CTTT-ATT-GACA-TCTGACCTCAAATCA-GGTAGGGCTACCCGCTGGA- Hypochnicium_wakefieldiae_2437 TT-GTAGCTGGCCATTATTTTGGCATGTGCACGCCCTGGT--AATCCAAATCAT-TTATAC--CTCTGTGCACTATTATGTGGGATTGATGAGGC--TTT-GGTGC-TTGCGCCAA--TGGCATTATCATT--CTCATG-TTTCACAT----------ACACTCT-TTAG-TATAGAATGTTAT--TGCGTTAGACGCATCTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGGG-TTT--GTCAAA-GAAACTTGG--TTGGACTTGGATATGGAGG-TTTCTTGCTGGTCT--TTACTGA---TCGGCTCCTCTG-AAATACATCAGCATAAATGGAAC-GC---TGTTTT--CAGTGTGATAATTATCTACACTGTGA----TTTGGC-CTTGCTATTTT--TG-CTTCTAATTGTCTGCAT-GAGTAGACAA-CTTT-ATT-GACA-TCTGACCTCAAATCA-GGTAGGACTACCCGCTGGAG Hypochnicium_wakefieldiae_2710 TT-GTAGCTGGCCATTATTTTGGCATGTGCACGCCCTGGT--AATCCAAATCAT-TTATAC--CTCTGTGCACTATTATGTGGGATTGATGAGGC--TTT-GGTGC-TTGCGCCAA--TGGCATTATCATT--CTCATG-TTTCACAT----------ACACTCT-TTAG-TATAGAATGTTAT--TGCGTTAGACGCATCTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGG-TTTT--GTCAAA-GAAACTTGG--TTGGACTTGGATATGGAGG-TTTCTTGCTGGTCT--TTACTGA---TCGGCTCCTCTG-AAATACATCAGCATAAATGGAAC-GC---TGTTTT--CAGTGTGATAATTATCTACACTGTGA----TTTGGC-CTTGCTATTTT--TG-CTTCTAATTGTCTGCAT-GAGTAGACAA-CTTT-ATT-GACA-TCTGACCTCAAATCA-GGTAGGGCTACCCGCTGGAA Hypochnicium_wakefieldiae_2755 TT-GTAGCTGGCCATTATTTTGGCATGTGCACGCCCTGGT--AATCCAAATCAT-TTATAC--CTCTGTGCACTATTATGTGGGATTGATGAGGC--TTT-GGTGC-TTGCGCCAA--TGGCATTATCATT--CTCATG-TTTCACAT----------ACACTCT-TTAG-TATAGAATGTTAT--TGCGTTAGACGCATCTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGTATTCTCAATCCAT-CTGGG-TTT--GTCAAA-AAAACTTGG--TTGGACTTGGATATGGAGG-TTTCTTGCTGGTCT--TTACTGA---TCGGCTCCTCTG-AAATACATCAGCATAAATGGAAC-GC---TGTTTT--CAGTGTGATAATTATCTACACTGTGA----TTTGGC-CTTGCTATTTT--TG-CTTCTAATTGTCTGCAT-GAGTAGACAA-CTTT-ATT-GACA-TCTGACCTCAAATCATGGTAGGGCTACCCGCTGTAT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_rDNA) = N: 1-638; CODONPOSSET CodonPositions (CHARACTERS = ITS_rDNA) = N: 1-638; END; [ The following blocks are output data for analysis step 1439 ] BEGIN TREES; TITLE Tb6215; LINK TAXA = TaxaForAnalysisStep1439; TREE Fig._1 = [&R] (Hypochnicium_punctulatum_938,(Hypochnicium_punctulatum_2833,((Hypochnicium_punctulatum_1921,((((Hypochnicium_wakefieldiae_2194,Hypochnicium_wakefieldiae_2383,(Hypochnicium_wakefieldiae_2755,Hypochnicium_wakefieldiae_2437)),Hypochnicium_wakefieldiae_2710,Hypochnicium_wakefieldiae_1709)Hypochnicium_wakefieldiae,(Hypochnicium_albostramineum_1865,Hypochnicium_albostramineum_269,Hypochnicium_albostramineum_1772)Hypochnicium_albostramineum),((Hypochnicium_cremicolor_2151,Hypochnicium_cremicolor_160)Hypochnicium_cremicolor,(Hypochnicium_geogenium_2052,Hypochnicium_subrigescens_1966)Hypochnicium_geogenium))),Hypochnicium_punctulatum_1362,Hypochnicium_punctulatum_1203,Hypochnicium_punctulatum_1794),Hypochnicium_punctulatum_1065)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr612] END;