#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 05, 2026; 18:29 GMT TreeBASE (cc) 1994-2008 Study reference: Dodd S., Lieckfeldt E., & Samuels G. 2002. Hypocrea atroviridis sp. nov., the teleomorph of Trichoderma atroviride. Mycologia, 95(1): 27-40. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S876] [ The following blocks are input data for analysis step 1457 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1457; DIMENSIONS NTAX=53; TAXLABELS Hypocrea_aureoviridis Hypocrea_gelatinosa Hypocrea_lutea Hypocrea_neorufa_GJS87.72 Hypocrea_neorufa_GJS96.132 Hypocrea_neorufa_GJS96.135 Hypocrea_neorufa_GJS96.143 Hypocrea_patella_GJS91.141 Hypocrea_patella_GJS91.146 Hypocrea_patella_GJS95.178 Hypocrea_patella_GJS96.198 Hypocrea_pulvinata_GJS92.127 Hypocrea_pulvinata_GJS98.104 Hypocrea_sulphurea_GJS95.140 Hypocrea_sulphurea_GJS95.176 Hypomyces_aurantius Hypomyces_dactylarioides Trichoderma_aggressivum Trichoderma_asperellum Trichoderma_atroviride Trichoderma_aureoviride Trichoderma_citrinoviride Trichoderma_crassum Trichoderma_fasciculatum Trichoderma_fertile Trichoderma_flavofuscum Trichoderma_ghanense Trichoderma_hamatum Trichoderma_harzianum_CBS226.95 Trichoderma_harzianum_GJS951.4 Trichoderma_inhamatum Trichoderma_koningii_CBS457.96 Trichoderma_koningii_GJS94.115 Trichoderma_koningii_GJS95.175 Trichoderma_longibrachiatum Trichoderma_longipile Trichoderma_minutisporum Trichoderma_oblongisporum Trichoderma_parceramosum Trichoderma_polysporum Trichoderma_pseudokoningii Trichoderma_pubescens Trichoderma_reesei Trichoderma_saturnisporum Trichoderma_spirale Trichoderma_strictipile Trichoderma_strigosum Trichoderma_tomentosum Trichoderma_virens Trichoderma_viride_vb Trichoderma_viride_vd Trichoderma_viride_ve Verticillium_cf._fungicola ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M338] TITLE ITS_rDNA; LINK TAXA = TaxaForAnalysisStep1457; DIMENSIONS NCHAR=653; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Hypocrea_aureoviridis CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGCTACCAAACCGTTGCCTCGGCGGG----A-TCTC-TGCCCCGGG-CGCTT---------CGCGGCCCCGGA-CCCAAGGCGCCCCGCCGGAGGAAGAAACAAC---CAAAA--------CTC-CTTTTCCCCATGCCCCTCGCACGCCCCCTCGCGGGCCGCGTCGGG------------------CTCTCTCTCTGAGCAAAACTTCTCGGCGCCCCTCACC-GGGCGCCTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAGCCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGGCCTCCTCCCTC-CGCGGGCGGGGGGCCGGCCCCGAAATTCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCACCGGGAGCGCGGCGCGTCCAATGCCGTAAAACAA-CCCAAACCTTCTGGAATGTTGACCTCGG Hypocrea_gelatinosa CCGAGTTT--ACAACTCCCAAA-CCC-CATGTGAACCTTACCAAACCGTTGCCTCGGCGGGA-----TATCT-GCCCCGGG-CGCGT---------CGCAGCCCCGGA--CCAAGGCGCCC-GCCGGAGG-AC---CAACC-CCAAA---------CCC--TTT-----------GCCGCATGCCCCCTCGCGGGCTC--------TTTTTTGTTT--------CTACAGTCTGAG----CCGTCTCGGCGCCCCTC--GCGGGCGTTCCGAAAACGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-CTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACACTCGAGCCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGG---CCCCCTCACCGGGG--------CCGGCCCCGAAATGCAATGGCGGTCTCGCCGCA-------------------------------------------------------------------------------------------------------- Hypocrea_lutea CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGGA-----TTTCT-GCCCCGGG-CGCGT---------CGCAGCCCCGGA--CCAAGGCGCCC-GCCGGAGG-AC---CAATTTACAAA---------CTC--TTT-----------GT---ATGTCCCTCTGCGG-A-----------TTTTTATTA---------TACATTCTGAG----CTTTCTCGGCGCTCCT-A-GCGAGCGTTTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGG---CCTTCT-ACCGG----------CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AACTTTCTG--------------- Hypocrea_neorufa_GJS87.72 CCGAGTTT--ACAACTCCCAAAACCC-AATGTGAACGCTACCAAACTGTTGCCTCGGCGGGG-----TCAC--GCCCCGGG-CGCGT---------CGCAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGGGAC---CAAC---CAAA---------CTC--TT---CT-------GC---A-GTCCGCTCGCGG-ACG---------TATTTCTT--------ACA--GCTCTGAGCAAAAA-------------------------CAC-AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCCCCCCGGGGGGAT-CGGCGTTGGGG-A--TCGGG-ACCCCTCACACG-GG-TG-----CCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCCCCTGCGCAGTAGTTTGCACAA--------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AACTCTCTGAAATGTTGACCTCGG Hypocrea_neorufa_GJS96.132 CCGAGTTT--ACAACTCCCAAAACCC-AATGTGAACGCTACCAAACTGTTGCCTCGGCGGGG-----TCAC--GCCCCGGG-CGCGT---------CGCAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGGGAC---CAAC---CAAA---------CTC--TT---CT-------GC---A-GTCCGCTCGCGG-ACG---------TATTTCTT--------ACA--GCTCTGAGCAAAAA-------------------------CAC-AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCCCCCCGGGGGGAT-CGGCGTTGGGG-A--TCGGG-ACCCCTCACACG-GG-TG-----CCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCCCCTGCGCAGTAGTTTGCACAA--------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AACTCTCTGAAATGTTGACCTCGG Hypocrea_neorufa_GJS96.135 CCGAGTTT--ACAACTCCCAAAACCC-AATGTGAACGCTACCAAACTGTTGCCTCGGCGGGG-----TCAC--GCCCCGGG-CGCGT---------CGCAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGGGAC---CAAC---CAAA---------CTC--TT---CT-------GC---A-GTCCGCTCGCGG-ACG---------TATTTCTT--------ACA--GCTCTGAGCAAAAA-------------------------CAC-AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCCCCCCGGGGGGAT-CGGCGTTGGGG-A--TCGGG-ACCCCTCACACG-GG-TG-----CCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCCCCTGCGCAGTAGTTTGCACAA--------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AACTCTCTGAAATGTTGACCTCGG Hypocrea_neorufa_GJS96.143 CCGAGTTT--ACAACTCCCAAAACCC-AATGTGAACGCTACCAAACTGTTGCCTCGGCGGGG-----TCAC--GCCCCGGG-CGCGT---------CGCAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGGGAC---CAAC---CAAA---------CTC--TT---CT-------GC---A-GTCCGCTCGCGG-ACG---------TATTTCTT--------ACA--GCTCTGAGCAAAAA-------------------------CAC-AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCCCCCCGGGGGGAT-CGGCGTTGGGG-A--TCGGG-ACCCCTCACACG-GG-TG-----CCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCCCCTGCGCAGTAGTTTGCACAA--------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AACTCTCTGAAATGTTGACCTCGG Hypocrea_patella_GJS91.141 CCGAGTTT--ACAACTCCCAAACCCC-AGTGTGAACGCTACCAAACTGTTGCCTCGGCGGG----A-TCTCTTGCCCCGGG-CGCGT---------CGCAGCCCCGGATCCCACGGCGCCC-GCCGGAGG-AC---CAAC---CAAGGAAACTCACCTCCCT----CTCTCC---GTCGCGCGCGCCCTCGCGCCGCGGCCCTGTCTTTTTTTTTTTTTTTT-ACCTTGCTCTGAG---CCTTTCTCGGCGACCCT-AGC-GGGCGTCTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-CTCTGGCGGGCATGCCTGTCCGAGCGTCATT-GAACAACCCTCGAACCCCCCCC----GGGTTCGGCGTTGGGG-ACC--GG---CCCCT--------CGC-GGGCGCCGCCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACG---------CTCGCACCGGGAGCGCGGCGCGGCCACAGCCGTGAAACA-CCCCAACCGTGACCAGACGTTGACCTCGG Hypocrea_patella_GJS91.146 CCGAGTTT--ACAACTCCCAAACCCC-AGTGTGAACGCTACCAAACTGTTGGCTCGGCGGG----A-TCTCTTGCCCCGGG-CGCGT---------CGCAGCCCCGGATCCCACGGCGCCC-GCCGGAGG-AC---CAAC---CAAGGAAACTCACCTCCCT----CTCTCC---GTCGCGCGCGCCCTCGCGCCGCGGCCCTGTCTTTTTTTTTTTTTTTT-ACCTTGCTCTGAG---CCTTTCTCGGCGACCCT-AGC--GGCGTCTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-CTCTGGCGGGCATGCCTGTCCGAGCGTCATT-GAACAACCCTCGAACCCCCCCC----GGGTTCGGCGTTGGGG-ACC--GC---CCCCT--------CGC-GGGCGCCGCCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACG---------CTCGCACCGGGAGCGCGGCGCGGCCACAGCCGTGAAACA-CCCCAACCGTCACCAGACGTTGACCTCGG Hypocrea_patella_GJS95.178 CCGAGTTT--ACAACTCCCAAACCCC-AGTGTGAACGCTACCAAACTGTTGCCTCGGCGGG----A-TCTCTTGCCCCGGG-CGCGT---------CGCAGCCCCGGATCCCACGGCGCCC-GCCGGAGG-AC---CAAC---CAAGGAAACTCACCTCCCT----CTCTCC---GTCGCGCGCGCCCTCGCGCCGCGGCCCTGTCTTTTTTTTTTTTTTTT-ACCTTGCTCTGAG---CCTTTCTCGGCGACCCT-AGC-GGGCGTCTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-CTCTGGCGGGCATGCCTGTCCGAGCGTCATT-GAACAACCCTCGAACCCCCCCC----GGGTTCGGCGTTGGGG-ACC--GG---CCCCT--------CGC-GGGCGCCCCCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACG---------CTCGCACCGGGAGCGCGGCGCGGCCACAGCCGTGAAACA-CCCCAACCGTCACCAGACGTTGACCTCGG Hypocrea_patella_GJS96.198 CCGAGTTT--ACAACTCCCAAACCCC-AGTGTGAACGCTACCAAACTGTTGCCTCGGCGGG----A-TCTCTTGCCCCGGG-CGCGT---------CGCAGCCCCGGATCCCACGGCGCCC-GCCGGAGG-AC---CAAC---CAAAGAAACTC-----CCT----CTCTCC---GTCGCGCGCGCCCTCGCGCCGCGGCCCTGTCTTTTT------------ACCTTGCTCTGAG---CCTTTCTCGGCGACCCT-AGC-GGGCGTCTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATT-GAACAACCCTCGAACCCCCCCCAGGGGGGTTCGGCGTTGGGG-ACC--GG---CCCCT--------CGC-GGGCGCCGCCCCC?AAATCCAGTGGCGGTCCCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACG---------CTCGCACCGGGAGCGCGGCGCGGCCACAGCCGTGAAACA-CCCCAACCGTCACCAGACGTTGACCTCGG Hypocrea_pulvinata_GJS92.127 CCGAGTTT--ACAACTCCCAAACCCC-AATGTGAACGTTACCAATCCGTTGCCTCGGCGGGTTAAACTCTTCTGCCCCGGG-CGCGT---------CGCAGCCCCGGA--CCAAGGCGCCC-GCCGGAGG-AC---CAACTCGCAAA---------CTC--TTTTT---------GTATCAT--CCCATCGCGG-----------ATTTTCTAAT-------AA----CTTCTGAG---C-TTTCTCGGCGCCCCT-AGC-GGGCGTTTCGAAAACGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTAATTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAGCCCCC-CC-GGGGGGT-CGGCGTTGGGG-A--TCGG-----CTT-ACACCTG---------CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCAACGGGAGCGCGGCGCGTCCACGGCCGTGAAACA-CCCCAAAC-TTCTGAAAGGTTGACCTCGG Hypocrea_pulvinata_GJS98.104 CCGAGTTT--ACAACTCCCAAACCCC-AATGTGAACGTTACCAATCCGTTGCCTCGGCGGGTTAAACTCTTCTGCCCCGGG-CGCGT---------CGCAGCCCCGGA--CCAAGGCGCCC-GCCGGAGG-AC---CAACTCGCAAA---------CTC--TTTTT---------GTATCAT--CCCATCGCGG-----------ATTTTCTAAT-------AA----CTTCTGAG---C-TTTCTCGGCGCCCCT-AGC-GGGCGTTTCGAAAACGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTAATTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAGCCCCC-CC-GGGGGGT-CGGCGTTGGGG-A--TCGG-----CTT-ACACCTG---------CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCAACGGGAGCGCGGCGCGTCCACGGCCGTGAAACA-CCCCAAAC-TTCTGAAAGGTTGACCTCGG Hypocrea_sulphurea_GJS95.140 CCGAGCTT--ACAACTCCCAAACCCC-AATGTGAACGTTACCAATCCGTTGCCTCGGCGGGTTATTCTCAC-TGCCCCGGG-CGCGT---------CGCAGCCCCGGA--CCAAGGCGCCC-GCCGGAGG-AC---CAACTCTCAAA---------CTC--TTCTT---------GTAACAT--CCCTTCGCGG-----------ATTTTCTAAT--------ACT---CTCTGAG---C-TTTCTCGGCGC-TCCCAGC-GAGCGTTTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAGCCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGG-----CTTAACACTTG---------CCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCAACGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AAC-TTCTGAAAGGTTGACCTCGG Hypocrea_sulphurea_GJS95.176 CCGAGTTT--ACAACTCCCAAACCCC-AATGTGAACGTTACCAATCCGTTGCCTCGGCGGGTTATTCTCAC-TGCCCCGGG-CGCGT---------CGCAGCCCCGGA--CCAAGGCGCCC-GCCGGAGG-AC---CAACT?TCAAA---------CTC--TATTTT--------GTAACAT--CCCTTCGCGG-----------ATTTTCTAAT--------ACT---CTCTGAG---CC-TTCTCGGCGC-TCCCAGC-GAGCGTTTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAGCCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGG-----CTTAACACTTG---------CCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCAACGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AAC-TTCTGAAAGGTTGACCTCGG Hypomyces_aurantius CCGAGTTTCCAAAACTCCCAAA-CCC-ACTGTGAACCTTACCATAACGTTGCTTCGGCGGGA--------CA-GCCCCGGG---CC--------CCCGCG--CCCGGAA-CCA-GGCGCCC-GCCGGAGGCCC---CAA----CAAA---------CTCTCGT------------GT---CTACCCC--AGCGG-------------CATCTACG---------------TCTGAG-------------TGGCCCGAAA--GGGC---AAGCAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGATGCCCCCCCGGGGGCGC-CGGTGTTGGGGGACC--GC---CCGCCGCCCAGAGCGGAGGG--CCGCCCCCGAAATGCAGTGGCGACCCCGCCGCAGCCTCCCCTGCGTAGTAGCTA-CATA-CT-GAAACCTCGCACCGGAGAGCGGCGCGGCTCT-G-CCGTTAAA---CCCC-AAC-TCACGAAAGGTTGACCTCGG Hypomyces_dactylarioides CCGAGTTAT-ACAACTCCCAAA-CCC-ACTGTGAACCTTACCAAATCGTTGCTTCGGCGGGA--------CT-GCCCCGGG--CCCT---------CGCGG-CCCGGA--CCAAGGCGCCC-GCCGGAGG------------CCAAAAA-------CTCTCCT------------GT----TTTCTCTTAGCGG-------------AATTTA-----------------TCTGAG-------------TGGCCCTCA--GGGGC---AAGCAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTTCGAGCGTCATTT---CAACCCTCAAGCCCCCCC-GGGGGCAT--GGTGTTGGGGGA---CGG---CCCCGCCCCGTGCGGTCCGG--CCGCCCCCGAAATGCAGTGGCGACCCCGCCGCAGCCTCCCCTGCGTAGTAGCTA-TACAACTGGAAACCTCGCACCGGAGAGCGGCGCTGCTCA-G-CCGTGAAA---CCCC-AAC-TTCTGAAAGGTTGACCTCGG Trichoderma_aggressivum CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGG----A-TCTC-TGCCCCGGGT-GCGT---------CGCAGCCCCGGA--CCAAGGCGCCC-GCCGGAGG-AC---CAAC--CCAAAA--------CTC--TTATT---------GT---ATACCCCCTCGCGGG-----------TTATTTTT---------ACTA---TCTGAG---CC-TTCTCGGCGCCTCTC-GTA-GGCGTTTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGGCCCTCCCTC--------GC-GGGGGCCGTCTCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCACCGGGAGCGCGGCGCGTCCACAGCCGTTAAACA--CCC-AAC-TTCTGAAATGTTGACCTCGG Trichoderma_asperellum CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGGG-----TCAC--GCCCCGGGT-GCGT---------CGCAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGGAAC---CAAC---CAAA---------CTC--TTT--CT-------GT---A-GTCCCCTCGCGG-ACG---------TATTTCTTT-------ACA--GCTCTGAGCAAAAA-------------------------TTC-AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGAT-CGGCGTTGGGG-A--TCGGG-ACCCCTCACACG-GG-TG-----CCGGCCCCTAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAA--------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AACTTTCTGAAATGTTGACCTCGG Trichoderma_atroviride CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACCATACCAAACTGTTGCCTCGGCGGGG-----TCAC--GCCCCGGGT-GCGT---------CGCAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGGGAC---CAAC---CAAA---------CTC--TTTT-CT-------GT---A-GTCCCCTCGCGG-ACG--------TTATTTCTT--------ACA--GCTCTGAGCAAAAA-------------------------TTC-AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-ACCTCGGGAGCCCCTAAGACG-GGATC-----CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAA--------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AAC-TTCTGAAATGTTGACCTCGG Trichoderma_aureoviride CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGCTACCAAACCGTTGCCTCGGCGGG----A-TCTC-TGCCCCGGG-CGCTT---------CGCGGCCCCGGA-CCCAAGGCGCCCCGCCGGAGGAAGAAACAAC---CAAAA--------CTC-CTTTTCCCCATGCCCCTCGCACGCCCCCTCGCGGGCCGCGTCGGG------------------CTCTCTCTCTGAGCAAAACTTCTCGGCGCCCCTCACC-GGGCGCCTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAGCCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGGCCTCCTCCCTC-CGCGGGCGGGGGGCCGGCCCCGAAATTCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCACCGGGAGCGCGGCGCGTCCAATGCCGTAAAACAA-CCCAAACCTTCTGGAATGTTGACCTCGG Trichoderma_citrinoviride CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAATCTGTTGCCTCGGCGGG----ATTCTC-TGCCCCGGG-CGCGT---------CGCAGCCCCGGATCCCATGGCGCCC-GCCGGAGG-AC---CAACT--CAAA---------CTCTTTTTT-CTCTCC---GTCGCGGCCTACGTCGCGG-----CTCTG--TTTTATTTTT------------GCTCTGAG---CCTTTCTCGGCGACCCT-AGC-GGGCGTCTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGG---CCCCTCACC----------GGGCCGCCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCACCGGGAGCGCGGCGCGGCCACAGCCGTAAAACA-CCCCAAAC--TCTGAAATGTTGACCTCGG Trichoderma_crassum CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCT-GGCGGG----A-TCTC-TGCCCCGGGT-GCGT---------CGCAGCCCCGGA--CCAAGGCGCCC-GCCGGAGG-AC---CA-C---CAAAA--------CTC-TTTAT----------GT---ATACCCCCTCGCGGG-----------TTTTTT-----------ACAA---TCTGAG---CCA-TCTCGGCG-CCCTC-GT-GGGCGTTTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_fasciculatum CCGAGTTT--ACAACTCCCAAACCCC-GA-GTGAACGTTACCAA-CTGTTGCCTCGGCGGG------TCTC-TGCCCCGGG-CGCGT---------CGCAGCCC-GGA--CCAA-GCGCCC-GCCGGAGG-AC---CAAC---CAAAAA-------CCC--TTT-----------G--------CCCCTCGCGGG-----------TTTTTTTT--------AACTG---TCTGAG---CCA-TCTCGGCGCCCCTC-GC-GGGCGTTTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_fertile CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGG----A-TCTC-TGCCCCGGGT-GCGT---------CGCAGCCC-GGA--CCAA-GCGCCC-GCCGGAGG-AC---CAAC---CAAAA--------CTC--TTATT---------GT---ATACCCCCTCGCGGG-----------TTTTTTT----------A-TAA--TCTGAG---CC-TTCTCGGCGCCTCTC-GTA-GGCGTTTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_flavofuscum CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGG----A-TCTC-TGCCCCGGGT-GCGT---------CGCAGCCC-GGA--CCAA-GCGCCC-GCCGGAGG-AC---CAAC---CAAAA--------CTC--TTATT---------GT---ATACCCCCTCGCGGG-----------TTTTTT-----------ACTA---TCTGAG---CCA-TCTCGGCGCCCCTC-GT-GGGCGTTTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_ghanense CGGAGTTT--ACAACTCCCAAACCCC-AATGTGAACGTTACCAATCTGTTGCCTCGGCGGG----A-TCTC-TGCCCCGGG-CGCGT---------CGCAGCCCCGGATCCCATGGCGCCC-GCCGGAGG-AC---CAAC---CAAA---------CTCTTTTTT-CTCTCC---GTCGCGGCTTCCGTCGCGG-----CTCTG--TTTTAACTTT------------GCTCTGAG---CCTTTCTCGGCGACCCT-AGC-GGGCGTCTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGGCACGCCCTCACAC--GGGTG-----CCGGCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCACCGGGAGCGCGGCGCGGCCACAGCCGTAAAACA-CCCCAAAC-TTCTGAAATGTTGACCTCGG Trichoderma_hamatum CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGGG-----TCAC--GCCCCGGGT-GCGT---------AAAAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGGAAC---CAAC---CAAA---------CTC--TTT--CT-------GT---A-GTCCCCTCGCGG-ACG---------TATTTCTT--------ACA--GCTCTGAGCAAAAA-------------------------TTC-AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGGG-ACCCCTCAC-CG-GG-TG-----CCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAA--------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AAC-TTCTGAAATGTTGACCTCGG Trichoderma_harzianum_CBS226.95 CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGG----A-TCTC-TGCCCCGGGT-GCGT---------CGCAGCCCCGGA--CCAAGGCGCCC-GCCGGAGG-AC---CAAC---CAAAA--------CTC--TTTTT---------GT---ATACCCCCTCGCGGG-----------TTTTTT-----------A-TAA--TCTGAG---CC-TTCTCGGCGCCTCTC-GTA-GGCGTTTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_harzianum_GJS951.4 CCGAGTTT--ACAACTCC-AAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGG----A-TCTC-TG-CCCGGGT-GC-T---------CGCAGCCCCGGA--CCAAGGCGCCC-GCCGGAGG-AC---CAAC---CAAAA--------CTC--TTAT----------GT---ATA-CCCCTCGCGGG-----------TTTTTTT----------A-TAA--TCTGAG---CC-TTCTCGGCGCCCCTC-GT-GGGCG-TTCGAAAAT-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAA-GCAGCGAAA-GCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGA-CGCACATTG-GCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCC-CGAACCCC-TC--GGGGGGT-CGGCGTTGGGG-A--TCGGCCCTCCCTCT-------GC-GGGGGCCGTCTCC-AAATACAGTG-CGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCACC-GGAGCGCGGC-CGTCCACAGCCGTTAAACA--CCC-AACTTTCTGAAATGTTGACCTCGG Trichoderma_inhamatum CCGAGTTT--ACAACTCCCAAA--CC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGG----A-TCTC-TGCCCCGGGT-GCGT---------CGCAGCCCCGGA--CCAAGGCGCCC-GCCGGAGG-AC---CAAC---CAAAA--------CTC--TTATT---------GT---ATACCCCCTCGCGGG-----------TTTTTTTT---------A-TAA--TCTGAG---CC-TTCTCGGCGCCTCTC-GTA-GGCGTTTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGGCCCTCCCTTA-------GC-GGGGGCCGTCTCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCATCGGGAGCGCGGCGCGTCCACAGCCGTTAAACA--CCC-AAC-TTCTGAAATGTTGACCTCGG Trichoderma_koningii_CBS457.96 CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACCATACCAAACTGTTGCCTCGGCGGGG-----TCAC--GCCCCGGGT-GCGT---------CGCAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGGGAC---CAAC---CAAA---------CTC--TTT--CT-------GT---A-GTCCCCTCGCGG-ACG--------TTATTTCTT--------ACA--GCTCTGAGCAAAAA-------------------------TTC-AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGGGAACCCCTAAGACG-GGATC-----CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCATGCGCAGTAGTTTGCACAA--------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AAC-TTCTGAAATGTTGACCTCGG Trichoderma_koningii_GJS94.115 CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGGG-----TCAC--GCCCCGGGT-GCGTT---------GCAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGGGAC---CAAC---CAAA---------CTC--TTT--CT-------GT---A-GTCCCCTCGCGG-ACG--------TTATTTCTT--------ACA--GCTCTGAGCAAAAAAA---------------------------AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCCCTC---GGGGGTCCGGCGTTGGGG-A--TCGGGGACCCCTAAGACG-GGATC-----CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAA--------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AACTTTCTGAAATGTTGACCTCGG Trichoderma_koningii_GJS95.175 CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACCATACCAAACTGTTGCCTCGGCGGGG-----TCAC--GCCCCGGGT-GCGT---------CGCAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGGGAC---CAAC---CAAA---------CTC--TTT--CT-------GT---A-GTCCCCTCGCGG-ACG--------TTATTTCTT--------ACA--GCTCTGAGCAAAAA-------------------------TTC-AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGGGAACCCCTAAGACG-GGATC-----CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAA--------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AAC-TTCTGAAATGTTGACCTCGG Trichoderma_longibrachiatum CCGAGTTT--ACAACTCCCAAACCCC-AATGTGAACGTTACCAATCTGTTGCCTCGGCGGG----ATTCTCTTGCCCCGGG-CGCGT---------CGCAGCCCCGGATCCCATGGCGCCC-GCCGGAGG-AC---CAACT-CCAAA---------CTCTTTTTTTCTCTCC---GTCGCGGCTCCCGTCGCGG-----CTCTG--TTTTATTTTT------------GCTCTGAG---CCTTTCTCGGCGACCCT-AGC-GGGCGTCTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGG---CCCCTCACC----------GGGCCGCCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCACCGGGAGCGCGGCGCGGCCACAGCCGTAAAACA-CCCCAAAC-TTCTGAAATGTTGACCTCGG Trichoderma_longipile CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGG----A-TCTC-TGCCCCGGGT-GCGT---------CGCAGCCC-GGA--CCAAGGCGCCC-GCCGGAGG-AC---CAAC---CAAAA--------CTC-TTTAT----------GT---ATACCCCCTCGCGGG-----------TTTTTT-----------ACAA---TCTGAG---CCA-TCTCGGCGCCCCTC-GT-GGGCGTTTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_minutisporum CCGAGATT--ACAACTCCCAAACCCC-TATGTGAACGTTACCAAACTGTTGCCTCGGCGGG-AAAA-TTTCATGCCCCGGG-CGCGT---------CGCAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGG-AC---CAAC---CAAAA--------CTC--TTTT----------GT---ATGTCCCCTCGCGG-AC---------TTTTATT----------A-T----TCTGAA---CCA-TCTCGGCGCCCCT-AGC-GGGCGTTTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_oblongisporum CCGAGTTT--ACAACTCCCAAACCCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGGG--AA-T-TC-TGCCCCGGG-CGCGT---------CGCAGCCCCGGA--CCAGAGCGCCC-GCCGGAGG-AC---CAAC---CAAAA--------CTC--TTT-----------GT---ATACCCCCTCGCGGG-----------TTTTTT-----------A------TCTGAG---CC-TTCTCGGCGCCCCT-AGT-GGGCGTTTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_parceramosum CCGAGTTT--ACAACTCCCAAACCCC-AATGTGAACGTTACCAATCTGTTGCCTCGGCGGG----A-TCTC-TGCCCCGGG-CGCGT---------CGCAGCCCCGGATCCCATGGCGCCC-GCCGGAGG-AC---CAAC---CAAA---------CTCTTTTTT-CTCTCC---GTCGCGGCTTCCGTCGCGG-----CTCTG--TTTTAACTTT------------GCTCTGAG---CCTTTCTCGGCGACCCT-AGC-GGGCGTCTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGGCACGCCCTCACACG-GG-TG-----CCGGCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCACCGGGAGCGCGGCGCGGCCACAGCCGTAAAACA-CCCCAAAC-TTCTGAAATGTTGACCTCGG Trichoderma_polysporum CCGAGTTT--ACAACTCCCAAACCCC-TATGTGAACGTTACCAAACTGTTGCCTCGGCGGG---AA-TTTCATGCCCCGGG-CGCGT---------CGCAGCCCCGGA--CCAAGGCGCCC-GCCGGAGG-AC---CAAC---CAAAA--------CTC--TTTT----------GT---ATGTCCCCTCGCGG-AC---------TTTTAT----------AA-T----TCTGAA---CCA-TCTCGGCGCCCCTTAGC-GGGCGTTTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC--GGGGGTCCGGCGTTGGGG-A--TCGG---CCCTTTA-----------CCGGCCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCATCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AACTTTCTGAAATGTTGACCTCGG Trichoderma_pseudokoningii CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAATCTGTTGCCTCGGCGGG----A-TCTC-TGCCCCGGG-CGCGT---------CGCAGCCCCGGACCCCATGGCGCCC-GCCGGAGG-AC---CAAC---CAAA---------CTCTTTTTT-CTCTCC---GTCGCGGCCTACGTCGCGG-----CTCTG--TTTTATTTT-------------GCTCTGAG---CCTTTCTCGGCGACCCT-AGC-GGGCGTCTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGG---CCCCTCACC----------GGGCCGCCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCACCGGGAGCGCGGCGCGGCCACAGCCGTAAAACA-CCCCAAAC--TCTGAAATGTTGACCTCGG Trichoderma_pubescens CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGGG-----TGAC--GCCCCGGGT-GCGT---------AAAAG-CCCGGAA-CCA-GGCGCCC-GCCGGAGGAAC---CAAC---CAAA---------CTC--TTT--CT-------GT---A-GTCCCCTCGCGG-ACG--------TTATTTCTT--------ACA--GCTCTGAGCAAAAA-------------------------TTC-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_reesei CCGAGTTT--ACAACTCCCAAACCCC-AATGTGAACGTTACCAATCTGTTGCCTCGGCGGG----ATTCTC-TGCCCCGGG-CGCGT---------CGCAGCCCCGGATCCCATGGCGCCC-GCCGGAGG-AC---CAACT--CAAA---------CTCTTTTTT-CTCTCC---GTCGCGGCTTCCGTCGCGG-----CTCTG--TTTTACCTTT------------GCTCTGAG---CCTTTCTCGGCGACCCT-AGC-GGGCGTCTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGG---CCCCTCACC----------GGGCCGCCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCACCGGGAGCGCGGCGCGGCCACAGCCGTAAAACA-CCCCAAAC--TCTGAAATGTTGACCTCGG Trichoderma_saturnisporum CCGAGTTT--ACAACTCCCAAACCCC-AATGTGAACGTTACCAATCTGTTGCCTCGGCGGG----A-TCTCTTGCCCCGGG-CGCGT---------CGCAGCCCCGGATCCCATGGCGCCC-GCCGGAGG-AC---CAACT--CAAA---------CTCTTTTTT-CTCTCC---GTCGCGGCTTCCGTCGCGG-----CTCTG--TTTTATTTTT------------GCTCTGAG---CCTTTCTCGGCGACCCT-AGC-GGGCGTCTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-A--TCGG---CCCCTCACC----------GGGCCGCCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACA---------CTCGCACCGGGAGCGCGGCGCGGCCACAGCCGTAAAACA-CCCCAAAC--TCTGAAATGTTGACCTCGG Trichoderma_spirale CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGG----A-TCTC-TGCCCCGGGT-GCGT---------CGCAGCCC-GGA--CCAA-GCGCCC-GCCGGAGG-AC---CAAC---CAAAA--------CTC--TTT-----------GT---ATACCCCCTCGCGGG-----------TTTTT------------A-TA----CTGAG---CCA--CTCGGCGCCTCTC-GTA-GGCGTTTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_strictipile CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGG----A-TCTC-TGCCCCGGG-CGCGT---------CGCAGCCC-GGA--CCAA-GCGCCC-GCCGGAGG-AC---CAAC---CAAAA--------CTC--TTATT---------GT---ATACCCCCTCGCGGG-----------TTTTTT-----------ACTA----CTGAG---CCA-TCTCGGCGCCCCTC-GT-GGGCGTTTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_strigosum CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGGG-----TCAC--GCCCCGGG-CGCGT---------CGCAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGGAAC---CAAC---CAAA---------CTC--TTTA-CT-------GT---A-GTCCCCTCGCGG-ACG--------TTTTTACTT--------ACA--GCTCTGAGCAAAA--------------------------TTC-AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-A-TGCGGGAACCCCTAAGACG-GGATC-----CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAA--------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AACTTTCTGAAATGTTGACCTCGG Trichoderma_tomentosum CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGG---AA--CTCATGCCCCGGGT-GCGT---------CGCAGCCCCGGA--CCAAGGCGCCC-GCCGGAGG-AC---CAAC---CAAAA--------CTC--TTATT---------GT---ATACCCCCTCGCGGG-----------TTTTTT-----------ACTA---TCTGAG---CCA-TCTCGGCGCCCCTC-GT-GGGCGTTTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_virens CCGAGTTT--ACAACTCCCAAA-CCC-AA-GTGAACGTTACCAAACTGT-GCCTCGGCGG-----A-TCTC-TGCCCCGGGT-GCGT---------CGCAGCCCCG-A--CCAAGGCGCCC-GCCGGAG--AC---CAAC---CAAA---------CTC--TTAT----------GT---ATACCCCCTCGCGGG-----------TTTTT------------ACTA---TCTGAG---CCA-TCT-GGCGCCCCT--GT-GGGCGTTTCGAAAATGAATCAAAACTT-CAACAACGGATCTCTTGGT-CTGGCATCG-TGAAGAACGCAGCGAAATGCGATAAGTAA-GTGAATTGCAGAATTCAGT-AATCATCGA-TCTTTGAACGCACATTGCGCCCGCCAGTA-T-CTGGCGGGCATGCCTGTC-GAGCGTCATT----CAACCCTCGAACCCC-TCC-GGGGGGT-CGG-GTTGGGG-A--TCGG---CCCTTTA-----------GGGGCCGG-CCCGAAATACAGTGGCGGTCTCGCCGCAGC-TCTCCTGCGCAGTAGTTTG-ACA---------CTCGCAC-GGGAGCGCGGCGCGTCCACAGCCGTT-AACA-CCCCAAAC-TTCTGAAAT-TTGACCTCGG Trichoderma_viride_vb CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACCATACCAAACTGTTGCCTCGGCGGGG-----TCAC--GCCCCGGGT-GCGT---------CGCAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGGGAC---CAAC---CAAA---------CTC--TTT--CT-------GT---A-GTCCCCTCGCGG-ACG--------TTATTT-TT--------ACA--GCTCTGAGCAAAAA-------------------------TTC-AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC-GGGGGGT-CGGCGTTGGGG-ACTTCGGGAACCCCTAAGACG-GGATC-----CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCATGCGCAGTAGTTTGCACAA--------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AAC-TTCTGAAATGTTGACCTCGG Trichoderma_viride_vd CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACCATACCAAACTGTTGCCTCGGCGGGG-----TCAC--GCCCCGGGT-GCGT---------CGCAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGGGAC---CAAC---CAAA---------CTC--TTT--CT-------GT---A-GTCCCCTCGCGG-ACG--------TTATTTCTT--------ACA--GCTCTGAGCAAAAA-------------------------TTC-AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCC-TCC--GGGGGTCCGGCGTTGGGG-A--TCGGGAACCCCTAAGACG-GGATC-----CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCATGCGCAGTAGTTTGCACAA--------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AAC-TTCTGAAATGTTGACCTCGG Trichoderma_viride_ve CCGAGTTT--ACAACTCCCAAA-CCC-AATGTGAACGTTACCAAACTGTTGCCTCGGCGGGG-----TCAC--GCCCCGGGT-GCGT---------AAAAGCCCCGGAA-CCA-GGCGCCC-GCCGGAGGGAC---CAAC---CAAA---------CTC--TTT--CT-------GT---A-GCCTTCGGGCG-------------TTATTTCTT--------ACA--GCTCTGAGCAAAAA-------------------------TTC-AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTA-TTCTGGCGGGCATGCCTGTCCGAGCGTCATTT---CAACCCTCGAACCCCCTA---GGGGGTCCGGCGTTGGGG-A--TCGGGGACCCCTAAGACG-GGATC-----CCGGCCCCTAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAA--------CTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACA--CCC-AAC-TTCTGAAATGTTGACCTCGG Verticillium_cf._fungicola CAGAGTTT--ACAACTCCCAAA-CCCAAATGTGAAC-ATACCAA-TCGTTGCTTCGGCG-GA-CTCGTCCCGGCGTCCGGGTGGCCTTGCGCTGCCCGCGG-CCCGGAT-CCA-GGCGGCC-GCCGGAGGC-----CAT----CAAA---------CTCT-TT------------GT--ATTACC----AG----------------TAT------------------CTTCTGAA-------------TCCGCCGCAA---GGCA--AAACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCA-TTCTGGCGGGCATGCCTGTTCGAGCGTCATTT---CAACCCTCGAGCTCCCTTT-GGGGAGCCCGGCGTTGGGG-ACC--GG---CCTCTACCG-------------CCGCCCCCGAAATACAGTGGCGGCCCCGTCACGGCGACCTCTGCGTAGTAACT----CAA-------CCTCGCACCGGAAACCCGACGTGGCCACG-CCGTAAAACA--CCC-CAC-TTCTG-AACGTTGACCTCGG ; END; BEGIN SETS; CHARSET ITS2 (CHARACTERS = ITS_rDNA) = 442-638; CHARSET 58S (CHARACTERS = ITS_rDNA) = 273-441; CHARSET ITS1 (CHARACTERS = ITS_rDNA) = 1-272; CHARSET ITS2ambig1 (CHARACTERS = ITS_rDNA) = 482-506; CHARSET ITS2end (CHARACTERS = ITS_rDNA) = 639-653; CHARSET ITS1ambig1 (CHARACTERS = ITS_rDNA) = 236-272; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_rDNA) = N: 1-653; CODONPOSSET CodonPositions (CHARACTERS = ITS_rDNA) = N: 1-653; END; [ The following blocks are output data for analysis step 1457 ] BEGIN TREES; TITLE Tb6233; LINK TAXA = TaxaForAnalysisStep1457; TREE Fig._1c = [&R] (((Trichoderma_aureoviride,Hypocrea_aureoviridis),((Hypocrea_sulphurea_GJS95.176,Hypocrea_sulphurea_GJS95.140),(Hypocrea_pulvinata_GJS92.127,Hypocrea_pulvinata_GJS98.104)),((Trichoderma_inhamatum,Trichoderma_harzianum_CBS226.95,Trichoderma_aggressivum),Trichoderma_virens),Trichoderma_polysporum,(((Hypocrea_patella_GJS91.146,Hypocrea_patella_GJS95.178,Hypocrea_patella_GJS91.141),Hypocrea_patella_GJS96.198),(((Trichoderma_citrinoviride,Trichoderma_pseudokoningii),Trichoderma_saturnisporum,Trichoderma_reesei,(Trichoderma_parceramosum,Trichoderma_ghanense)),Trichoderma_longibrachiatum)),((Trichoderma_koningii_CBS457.96,Trichoderma_viride_vb,Trichoderma_viride_vd),Trichoderma_atroviride,Trichoderma_koningii_GJS95.175,(Trichoderma_viride_ve,Trichoderma_hamatum),Trichoderma_asperellum,Trichoderma_koningii_GJS94.115,Trichoderma_strigosum,(Hypocrea_neorufa_GJS87.72,Hypocrea_neorufa_GJS96.135,Hypocrea_neorufa_GJS96.143,Hypocrea_neorufa_GJS96.132)),Hypocrea_lutea),((Hypomyces_dactylarioides,Hypomyces_aurantius),Verticillium_cf._fungicola)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4034] END;